BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030111
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 236 bits (601), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 112/183 (61%), Positives = 145/183 (79%), Gaps = 6/183 (3%)
Query: 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMN 60
MIKLF +K++++E + ++ KK SA +LR+ +DI+ELNLPKTC I+F + DDL+N
Sbjct: 3 MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 61 FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120
F++ I PDEG+Y G FVF+F+V YPH+ PKVKC+T VYHPNIDLEGNV LNILREDW
Sbjct: 57 FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW 116
Query: 121 KPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFI 180
KPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 176
Query: 181 RCI 183
RC+
Sbjct: 177 RCL 179
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 128/156 (82%), Gaps = 1/156 (0%)
Query: 28 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIY 87
SA +LR+ +DI+ELNLPKTC I+F + DDL+NF++ I PDEG+Y G FVF+F+V Y
Sbjct: 5 SAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGY 63
Query: 88 PHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLN 147
PH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN 123
Query: 148 HEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 183
EAA VL++N +LFE NV+R+ GGY+G T+F RC+
Sbjct: 124 KEAAEVLQNNRRLFEQNVQRSXRGGYIGSTYFERCL 159
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 114/179 (63%), Gaps = 7/179 (3%)
Query: 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCS---ITFPNGKDD 57
M+KL ++++K+++ EN++ P SA +RL RD+ L+LP T + IT P+ D
Sbjct: 3 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 58 LMN--FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 115
+ EV +RPDEGYY G+ F + +YP E PKV C K++HPNIDL+GNVCLNI
Sbjct: 61 SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNI 120
Query: 116 LREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174
LREDW P L++ +II GL LF +PN DPLN +AA +L + K F VR M+GG +
Sbjct: 121 LREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 10/144 (6%)
Query: 17 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVG 74
+A ++ S + L ++++EL NLP TC + FP+ + L F++++ PDEGYY G
Sbjct: 2 SATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQG 60
Query: 75 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRED------WKPVLNINT 128
G F F +V Y PKVKC TK++HPNI G +CL++LRE W P +
Sbjct: 61 GKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKD 120
Query: 129 IIYGLFHLFTQ-PNYEDPLNHEAA 151
+++GL LFT N++DPLN EAA
Sbjct: 121 VVWGLNSLFTDLLNFDDPLNIEAA 144
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 10/137 (7%)
Query: 24 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTF 81
++ S + L ++++EL NLP TC + FP+ + L F++++ PDEGYY GG F F
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFET 67
Query: 82 QVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFH 135
+V Y PKVKC TK++HPNI G +CL++LRE W P + +++GL
Sbjct: 68 EVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNS 127
Query: 136 LFTQ-PNYEDPLNHEAA 151
LFT N++DPLN EAA
Sbjct: 128 LFTDLLNFDDPLNIEAA 144
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEA 91
R+ +++ E+ C+ + DD+ ++ +I PD+ Y GG F YP +A
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
P+V TKVYHPNI+ G +CL+IL++ W P L ++ ++ + L T PN DPL+ E A
Sbjct: 68 PRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVA 127
Query: 152 AVLRDNPKLFESNVR 166
VLR N K FE R
Sbjct: 128 NVLRANKKQFEDTAR 142
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 33 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 90
R++R++++L P + S P G DDL +++ +I P + Y GG F + YP +
Sbjct: 5 RINRELADLGKDPPSSSSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEA 150
PKV T++YHPNI+ G++CL+ILR+ W P L I+ ++ + L T PN +DPL E
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 151 AAVLRDNPKLFESNVR 166
A V + + +E + R
Sbjct: 124 AHVYKTDRSRYELSAR 139
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++S+L + P +CS P G DDL +++ SI P + Y GG F + YP
Sbjct: 6 RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PK+ TK+YHPNI+ GN+CL+IL++ W P L ++ ++ + L T N +DPL E
Sbjct: 64 KPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 150 AAAVLRDNPKLFESNVRR 167
A + + + +E+ R
Sbjct: 124 IAHIYKTDRPKYEATARE 141
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 24 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFT 80
V + S R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLT 71
Query: 81 FQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQP 140
YP + PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L P
Sbjct: 72 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDP 131
Query: 141 NYEDPLNHEAAAVLRDN 157
N +DPL E A + + +
Sbjct: 132 NPDDPLVPEIARIYKTD 148
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 24 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFT 80
V + S R+ +++S+L + P CS P G DDL +++ +I P + Y GG F T
Sbjct: 14 VPRGSMALKRIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLT 71
Query: 81 FQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQP 140
YP + PK+ TK+YHPNI+ G++CL+ILR W P L ++ ++ + L P
Sbjct: 72 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDP 131
Query: 141 NYEDPLNHEAAAVLRDNPKLFESNVR 166
N +DPL + A + + + + + + R
Sbjct: 132 NPDDPLVPDIAQIYKSDKEKYNRHAR 157
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 10 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 68 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 127
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 128 IARIYKTD 135
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 5 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 123 IARIYKTD 130
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 15 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 133 IARIYQTD 140
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++S+L + P CS P G DDL +++ +I P + Y GG F T YP
Sbjct: 7 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PK+ TK+YHPNI+ G++CL+ILR W P L ++ ++ + L PN +DPL +
Sbjct: 65 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 124
Query: 150 AAAVLRDNPKLFESNVR 166
A + + + + + + R
Sbjct: 125 IAQIYKSDKEKYNRHAR 141
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++S+L + P CS P G DDL +++ +I P + Y GG F T YP
Sbjct: 11 RIQKELSDLQRDPPAHCSAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PK+ TK+YHPNI+ G++CL+ILR W P L ++ ++ + L PN +DPL +
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 150 AAAVLRDNPKLFESNVR 166
A + + + + + + R
Sbjct: 129 IAQIYKSDKEKYNRHAR 145
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 79/138 (57%), Gaps = 5/138 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++++L + P CS P G DD+ +++ +I P++ Y GG F YP
Sbjct: 25 RINKELNDLSKDPPTNCSAG-PVG-DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV TK+YHPNI+ +G +CL+IL++ W P L I+ ++ + L T PN +DPL E
Sbjct: 83 KPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPE 142
Query: 150 AAAVLRDNPKLFESNVRR 167
A + + + ++ R
Sbjct: 143 IAHLYKSDRMRYDQTARE 160
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++S+L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 15 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 73 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 132
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 133 IARIYKTD 140
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++S+L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 13 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 71 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 130
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 131 IARIYKTD 138
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++S+L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++S+L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 4 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 62 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 121
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 122 IARIYKTD 129
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVS-IRPDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ + + P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++ +L + P CS P G DDL +++ +I P E Y GG F T YP
Sbjct: 8 RIQKELQDLGRDPPAQCSAG-PVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 126 IARIYKTD 133
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++CL+ LR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 125 IARIYKTD 132
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++ +L + P CS P G DDL +++ +I P + Y GG F T YP
Sbjct: 10 RIQKELQDLQRDPPAQCSAG-PVG-DDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV TK+YHPNI+ G++CL+ILR W P L ++ ++ + L PN +DPL +
Sbjct: 68 KPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 127
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 128 IAHIYKSD 135
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 24 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFT 80
V + S R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T
Sbjct: 14 VPRGSMALKRIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLT 71
Query: 81 FQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQP 140
YP + PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L P
Sbjct: 72 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDP 131
Query: 141 NYEDPLNHEAAAVLRDN 157
N +DPL E A + + +
Sbjct: 132 NPDDPLVPEIARIYKTD 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAAVLRDNPKLF-----ESNVRRAMAGG 172
A + + + + + E + AM G
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGS 152
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 8 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 66 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 125
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 126 IARIYKTD 133
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 4 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 62 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPE 121
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 122 IARIYKTD 129
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 28 SAGEL--RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVS 84
SA L R+ ++ +L IT D+L F+V+I P++ Y G F +
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 85 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYED 144
YP EAPKV+ TK+YHPNID G +CL++L+ +W P L I T++ + L PN D
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 145 PLNHEAA 151
PL ++ A
Sbjct: 122 PLANDVA 128
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEA 91
R+ ++ +L IT D+L F+V+I P++ Y G F + YP EA
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
PKV+ TK+YHPNID G +CL++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 67 PKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+++++S+L + P CS P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 5 RINKELSDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHPNI+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 123 IARIYKTD 130
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 21 KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVF 79
TP +K RL RD L I+ +++M + I PD+ + GGTF
Sbjct: 2 STPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 80 TFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ 139
+ Q S YP++ P V+ ++++HPNI +G++CL+IL+ W P+ ++ I+ + L
Sbjct: 56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 140 PNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175
PN P N EAA + ++ + + VR + +
Sbjct: 116 PNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+ +++S+L + P C P G DDL +++ +I P + Y GG F T YP
Sbjct: 11 RIQKELSDLQRDPPAHCRAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PK+ TK+YHPNI+ G++ L+ILR W P L ++ ++ + L PN +DPL +
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 150 AAAVLRDNPKLFESNVR 166
A + + + + + + R
Sbjct: 129 IAQIYKSDKEKYNRHAR 145
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 47 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 106
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157
T++ + L + PN +DPL ++ A + N
Sbjct: 107 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 137
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 44 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157
T++ + L + PN +DPL ++ A + N
Sbjct: 104 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 134
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 45 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 104
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157
T++ + L + PN +DPL ++ A + N
Sbjct: 105 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 135
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 101
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157
T++ + L + PN +DPL ++ A + N
Sbjct: 102 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEA 91
RL RD +L ++ +D+++ +E I P E + GTF + + + YP++
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
P VK +K++HPN+ +G++CL+IL+ W P ++ I+ + L +PN P N AA
Sbjct: 68 PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 127
Query: 152 AVLRDNPKLFESNVRRAMAGGYV 174
+ ++N + +E V++ + ++
Sbjct: 128 QLYQENRREYEKRVQQIVEQSWL 150
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
P + + GGTF + YP APKV+ TK+YHPN+D G +CL+IL++ W P L I
Sbjct: 40 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157
T++ + L + PN +DPL ++ A + N
Sbjct: 100 RTVLLSIQALLSAPNPDDPLANDVAEQWKTN 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEA 91
RL RD +L ++ +D+++ +E I P E + GTF + + + YP++
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
P VK +K++HPN+ +G++CL+IL+ W P ++ I+ + L +PN P N AA
Sbjct: 71 PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 130
Query: 152 AVLRDNPKLFESNVRRAMAGGYV 174
+ ++N + +E V++ + ++
Sbjct: 131 QLYQENRREYEKRVQQIVEQSWL 153
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
Query: 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPH 89
R+H+++++L + P C P G DD+ +++ +I P++ Y GG F T YP
Sbjct: 5 RIHKELNDLARDPPAQCRAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90 EAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
+ PKV T++YHP I+ G++ L+ILR W P L I+ ++ + L PN +DPL E
Sbjct: 63 KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 150 AAAVLRDN 157
A + + +
Sbjct: 123 IARIYKTD 130
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEA 91
R+ ++ +L IT D+L F+V+I P++ Y G F + YP EA
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
PKV+ TK+YHPNID G + L++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 67 PKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEA 91
RL RD L ++ ++++M + I EG + GTF + S YP++
Sbjct: 8 RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
P V+ +K++HPN+ +G++CL+IL+ W P ++++I+ + L +PN P N +AA
Sbjct: 68 PTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAA 127
Query: 152 AVLRDNPKLFESNV 165
+ ++N + +E V
Sbjct: 128 QLYQENKREYEKRV 141
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 28 SAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVS 84
S R+ ++++E+ L P CS P G D++ + +I P Y GG F S
Sbjct: 2 STSAKRIQKELAEITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFS 59
Query: 85 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYED 144
P YP + PKV +T++YH NI+ +G +CL+IL+++W P L I+ ++ + L T N D
Sbjct: 60 PDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 119
Query: 145 PL 146
PL
Sbjct: 120 PL 121
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
PD Y GGT+ + YP E PKV+ TK+YHPNID G +CL+IL++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAA 151
T++ + L + P +DPL+ + A
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVA 124
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEA 91
R+ ++ +L IT D+L F+V+I P++ Y G F + YP EA
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
PKV+ TK+YHP ID G + L++L+ +W P L I T++ + L PN DPL ++ A
Sbjct: 67 PKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVA 126
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNI 126
PD Y GGT+ + YP E PKV+ TK+YHPNID G +CL+IL++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLFHLFTQPNYEDPLNHEAA 151
T++ + L + P +DPL+ + A
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVA 124
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 22 TPVKKQSAGELRLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIR-PDEGYYVGGTFVF 79
T K++ + RL +++ L + IT FP+G D+L + ++ P + Y +
Sbjct: 2 TTSKERHSVSKRLQQELRTLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKL 60
Query: 80 TFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ 139
T + YP++ P VK T +HPN+D GN+CL+IL+E+W ++ TI+ L L +
Sbjct: 61 TLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGE 120
Query: 140 PNYEDPLNHEAA 151
PN PLN +AA
Sbjct: 121 PNNASPLNAQAA 132
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 56 DDLMNFEV-SIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLN 114
+D+ +EV I P + Y GG F YP + PK+K ++++HPNID EGNVC++
Sbjct: 31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 115 IL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 161
IL E W PV + TI+ + + T PN+E P N +AA + R+N F
Sbjct: 91 ILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEF 150
Query: 162 ESNVRRAM 169
+ V + +
Sbjct: 151 KKKVAQCV 158
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 28 SAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVS 84
S R+ ++++++ L P CS P G D++ + +I P Y GG F +
Sbjct: 47 STSAKRIQKELADITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 85 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYED 144
P YP + PKV +T++YH NI+ +G +CL+IL+++W P L I+ ++ + L T N D
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 164
Query: 145 PL 146
PL
Sbjct: 165 PL 166
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HP + G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 111 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN + P EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E DW+P + I I+ G+ L +PN + P EA + N +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 12 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSIT-FPNGKDDLMNFEVSIRPD 68
R+ AE + G + PV K RL +++ L + I+ FP D+L + +I
Sbjct: 17 RKGAEPSGGAARGPVGK------RLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGA 69
Query: 69 EG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNIN 127
G Y + + + YP+ AP VK T YHPN+D +GN+ L+IL+E W + ++
Sbjct: 70 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVR 129
Query: 128 TIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFE 162
TI+ + L +PN + PLN AA + + NP F+
Sbjct: 130 TILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFK 163
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
V L+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G + GG F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
V L+IL ED W+P + I I+ G+ L +PN +DP EA + N +E VR
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 50 TFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 108
FPN ++DL + +V+I EG Y GG F + +P PK TK++HPN+
Sbjct: 35 VFPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN 93
Query: 109 GNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
G +C+N+L+ DW L I ++ + L PN E LN EA +L +N + + + R
Sbjct: 94 GEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 32 LRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHE 90
LRL +++ ++ I + + I+ EG Y GG F + YP+
Sbjct: 26 LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 91 APKVKCKTKVYHPNIDLE-GNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 149
PK+K TK++HPNI + G +CL++L+ +W P L I T + + L + P +DP + E
Sbjct: 86 PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAE 145
Query: 150 AAAVLRDNPKLF 161
A + ++N LF
Sbjct: 146 VAKMYKENHALF 157
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEA 91
RL RD + ++ D++M + I P + Y GTF + YP++
Sbjct: 8 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAA 151
P VK ++++HPN+ G +CL+IL+ W P ++ +I+ + LF PN P N EAA
Sbjct: 68 PHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAA 127
Query: 152 AVLRDNPKLFESNVRRAMAGGY 173
+ +D+ + V+ + +
Sbjct: 128 TLFKDHKSQYVKRVKETVEKSW 149
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 72 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE-GNVCLNILREDWKPVLNINTII 130
Y GG F + P YP+ PK+K TK++HPNI + G +CL+IL+ +W P L I T +
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 131 YGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ + P DP + E A ++ +N LF +
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 33 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEA 91
RL R++ L IT KD + + I Y G F + YP E
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNIL----REDWKPVLNINTIIYGLFHLFTQPNYEDPLN 147
P+++ T +YHPNID G +CL++L + W+P LNI T++ + L ++PN +DPL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 148 HEAAAVLRDNPKLFESNVRR 167
+ ++ + N F N R+
Sbjct: 128 ADISSEFKYNKPAFLKNARQ 147
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 57 DLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL 116
+++ + + PD+ Y F P YP + P +K TK+YHPN+D G +CL I+
Sbjct: 33 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
Query: 117 -REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 165
E+WKP ++ L L +PN +PL + A +L NP+LF N
Sbjct: 93 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 142
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 57 DLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL 116
+++ + + PD+ Y F P YP + P +K TK+YHPN+D G +CL I+
Sbjct: 30 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
Query: 117 -REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 165
E+WKP ++ L L +PN +PL + A +L NP+LF N
Sbjct: 90 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 139
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 29 AGELRLHRDISELNLPKTCSI-TFPNGKDD---LMNFEVSIRPDEGYYVGGTFVFTFQVS 84
A RL +++ E+ + C + F N + D L+ ++ I PD Y G F
Sbjct: 2 AASRRLMKELEEI---RKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 58
Query: 85 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYE 143
YP + PK+ KTK+YHPNID +G VCL ++ E+WKP + +I L L P E
Sbjct: 59 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 118
Query: 144 DPLNHEAAAVLRDNPKLFESNV 165
PL + A + K F N
Sbjct: 119 HPLRADLAEEYSKDRKKFCKNA 140
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 29 AGELRLHRDISELNLPKTCSI-TFPNGKDD---LMNFEVSIRPDEGYYVGGTFVFTFQVS 84
A RL +++ E+ + C + F N + D L+ ++ I PD Y G F
Sbjct: 4 AASRRLMKELEEI---RKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 60
Query: 85 PIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYE 143
YP + PK+ KTK+YHPNID +G VCL ++ E+WKP + +I L L P E
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 144 DPLNHEAAAVLRDNPKLFESNV 165
PL + A + K F N
Sbjct: 121 HPLRADLAEEYSKDRKKFCKNA 142
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 53 NGKDDLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110
+G DLMN++V I +P + GG + T YP PK + ++HPN+ G
Sbjct: 39 DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGT 97
Query: 111 VCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
VCL+IL E+ WKP + I I+ G+ L PN P EA + + + +E VR
Sbjct: 98 VCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 72 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI-DLEGNVCLNILREDWKPVLNINTII 130
Y GG FV +V YP + PK++ TKVYHPNI + G +CL+ILR W PV+ + + +
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSAL 106
Query: 131 YGLFHLFTQPNYEDPLNHEAAA-VLRD 156
L L P DP + E A LRD
Sbjct: 107 ISLQALLQSPEPNDPQDAEVAQHYLRD 133
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 30 GELRLHRDISELNLPKTCSITFPNG---KDDLMNFEV-SIRPDEGYYVGGTFVFTFQVSP 85
G L L R ++ELN K F G +DL +EV I P + Y GG F
Sbjct: 18 GSLLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75
Query: 86 IYPHEAPKVKCKTKVYHPNIDLEGNVCLNIL-------------REDWKPVLNINTIIYG 132
YP PK+K T+++HPN+D G+VC++IL E W P+ + TI+
Sbjct: 76 DYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 135
Query: 133 LFHLFTQPNYEDPLNHEAAAVLRDN 157
+ + PN + P N +AA R++
Sbjct: 136 VISMLADPNGDSPANVDAAKEWRED 160
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 53 NGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNV 111
+G DL +E I EG + GG + T + YP + PKVK YHPN+ G +
Sbjct: 35 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 94
Query: 112 CLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 165
CL+IL E DW+P + + I+ G+ L PN P A N ++ V
Sbjct: 95 CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 53 NGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNV 111
+G DL +E I EG + GG + T + YP + PKVK YHPN+ G +
Sbjct: 33 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 92
Query: 112 CLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNV 165
CL+IL E DW+P + + I+ G+ L PN P A N ++ V
Sbjct: 93 CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 72 YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI-DLEGNVCLNILREDWKPVLNINTII 130
Y GG FV +V YP + PK++ TKVYHPNI + G +CL+IL+ W PV+ + + +
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSAL 105
Query: 131 YGLFHLFTQPNYEDPLNHEAAA-VLRD 156
L L P DP + E A LRD
Sbjct: 106 ISLQALLQSPEPNDPQDAEVAQHYLRD 132
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 57 DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 115
DL N+EV+I P YY GG F + YP+ P + TK++HPNI G+VC++I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 116 LR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155
L E W P N+ TI+ + L +PN P N +A+ + R
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 148
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 57 DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNI 115
DL N+EV+I P YY GG F + YP+ P + TK++HPNI G+VC++I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 116 LR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155
L E W P N+ TI+ + L +PN P N +A+ + R
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 145
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)
Query: 23 PVKKQSAGELRLHRDISELNLPKTCSIT---FPNGKDDLMNFEVSIRPDEGY-YVGGTFV 78
P AG LR +R E++ + C+ T +P+ D + F V + EG Y GT++
Sbjct: 2 PGSMSGAGNLRSNRR-REMDYMRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWM 58
Query: 79 FTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLNINTII-YGLFHL 136
Q+ YP ++P + ++ HPN+D G+VCL+++ + W P+ + I L L
Sbjct: 59 LHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQL 118
Query: 137 FTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 170
PN DPLN +AA +L + F++ +R ++
Sbjct: 119 LRYPNPSDPLNVQAAHLLHADRVGFDALLREHVS 152
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 60 NFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILR 117
+F+V P+ Y GG + + YP +P + K+ HPN+D G+VCL+++
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 118 EDWKPVLN-INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 167
+ W P+ + +N L L T PN DPLN +AA++L + ++E V+
Sbjct: 90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKE 140
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 125
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 63 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 122
Query: 126 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ T++ L L +DP + A + NP++F+ R
Sbjct: 123 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 125
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 158
Query: 126 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ T++ L L +DP + A + NP++F+ R
Sbjct: 159 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 125
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 50 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 109
Query: 126 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ T++ L L +DP + A + NP++F+ R
Sbjct: 110 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 125
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 48 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 107
Query: 126 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ T++ L L +DP + A + NP++F+ R
Sbjct: 108 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLN 125
P + Y GG + ++ YP PKV+ TK++HPNI + G +CL+IL++ W +
Sbjct: 47 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 106
Query: 126 INTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
+ T++ L L +DP + A + NP++F+ R
Sbjct: 107 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 28 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPI 86
S G+ R+ D+ +L + +T G L F V +G Y GG + +
Sbjct: 24 SPGKRRMDTDVIKL-IESKHEVTILGG---LNEFVVKFYGPQGTPYEGGVWKVRVDLPDK 79
Query: 87 YPHEAPKVKCKTKVYHPNID-LEGNVCLNILREDWKPVLNINTIIYGLF-HLFTQPNYED 144
YP ++P + K++HPNID G VCL+++ + W + ++ I L PN D
Sbjct: 80 YPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPID 139
Query: 145 PLNHEAAAVLRDNPKLFESNVRR 167
PLN +AAA+ P+ ++ ++
Sbjct: 140 PLNGDAAAMYLHRPEEYKQKIKE 162
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 32 LRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRP-DEGYYVGGTFVFTFQVSPIYPHE 90
L LHRD +L IT +D+M +EV I + G F T + Y +
Sbjct: 26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85
Query: 91 APKVKCKTKVYHPNIDLE-GNVCLNILR--EDWKPVLNINTIIYGLFHLFTQPNYEDPLN 147
P VK T +HPN+D G C++ L E W +++I+ L + + P E+P+N
Sbjct: 86 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145
Query: 148 HEAAAVLRDNPKLFESNVR 166
EAA +L + L+ + +R
Sbjct: 146 LEAARILVKDESLYRTILR 164
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 49 ITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107
+ P ++++ ++ I+ P + Y G F + YP PK+ + HPNI
Sbjct: 25 VAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84
Query: 108 EGNVCLNIL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVL 154
G VC++IL E W PV ++ I+ + + ++PN E N +A +
Sbjct: 85 NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144
Query: 155 RDNPKLFESNVRRAM 169
RDN FE V+ ++
Sbjct: 145 RDNRPEFERQVKLSI 159
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 33 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 90
RL + +L L P + P +++ +E I P++ + G F YP
Sbjct: 7 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 66
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLF 137
PK++ +++HPNI +G VC++IL E W PV ++ I+ + +
Sbjct: 67 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 126
Query: 138 TQPNYEDPLNHEAAAVLRDNPKLF 161
+PN E N +A+ + RD+ + F
Sbjct: 127 AEPNDESGANVDASKMWRDDREQF 150
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 33 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 90
RL + +L L P + P +++ +E I P++ + G F YP
Sbjct: 13 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 72
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLF 137
PK++ +++HPNI +G VC++IL E W PV ++ I+ + +
Sbjct: 73 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 132
Query: 138 TQPNYEDPLNHEAAAVLRDNPKLF 161
+PN E N +A+ + RD+ + F
Sbjct: 133 AEPNDESGANVDASKMWRDDREQF 156
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 33 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 90
RL + +L L P + P +++ +E I P++ + G F YP
Sbjct: 11 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 70
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLF 137
PK++ +++HPNI +G VC++IL E W PV ++ I+ + +
Sbjct: 71 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 130
Query: 138 TQPNYEDPLNHEAAAVLRDNPKLF 161
+PN E N +A+ + RD+ + F
Sbjct: 131 AEPNDESGANVDASKMWRDDREQF 154
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%)
Query: 33 RLHRDISELNL-PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHE 90
RL + +L L P + P +++ +E I P++ + G F YP
Sbjct: 10 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 69
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLF 137
PK++ +++HPNI +G VC++IL E W PV ++ I+ + +
Sbjct: 70 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSML 129
Query: 138 TQPNYEDPLNHEAAAVLRDNPKLF 161
+PN E N +A+ + RD+ + F
Sbjct: 130 AEPNDESGANVDASKMWRDDREQF 153
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 44 PKTCSITFPNGKDDLMNFEVSIR-PDEGYY--VGGTFVFTFQVSPIYPHEAPKVKCKTKV 100
P + +I F D + N+ + ++ P + Y G T+ + S YPHE P V+ T V
Sbjct: 36 PHSTAI-FSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94
Query: 101 YHPNIDLEGNVCLNILREDWKPVLNINTII-YGLFHLFTQ--PNYEDPLNHEAAAVLRDN 157
Y P + EG +C ++ + W P + + +I L +F+Q +D +N EA L
Sbjct: 95 YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKF 154
Query: 158 PKLFESNVRRA 168
P+ F + VRR
Sbjct: 155 PQDFAARVRRG 165
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 52 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + A++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 52 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 109 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 52 PNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y F +V YP PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155
G +CLNIL+ E+W PV ++ ++ ++ L +P + PL+ + ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 20 GKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGT 76
G P ++ + RL +++ L + P ++ + ++ + + V + G Y G
Sbjct: 13 GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEK 72
Query: 77 FVFTFQVSPIYPHEAPKVKCKTK--VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLF 134
F F+ S YP ++P+V + HP++ G++CL+IL EDW P L++ ++ +
Sbjct: 73 FQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
Query: 135 HLFT 138
+ +
Sbjct: 133 SMLS 136
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 67 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH-----PNIDLEGNVCLNIL----- 116
P + Y G F F YP P V +T H PN+ +G VCL+IL
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178
Query: 117 --REDWKP--------VLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVR 166
E W P ++++ ++I F +P YE + + + ++ N+R
Sbjct: 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGT---QSSREYDGNIR 235
Query: 167 RA 168
+A
Sbjct: 236 QA 237
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 87 YPHEAPKVKCKTKVY------HPNIDLEGNVCLNILREDWKPVLNIN 127
+PH AP+ K + Y +DL N +NI+ ED K V+NIN
Sbjct: 352 WPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN 398
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES
Cerevisiae Gcn2
Length = 138
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 61 FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDW 120
FE+++R + V + F ++P+YP+ AP+++ K N+ + L +L+ ++
Sbjct: 48 FEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK------NVQNVMDSQLQMLKSEF 101
Query: 121 KPVLNIN 127
K + N +
Sbjct: 102 KKIHNTS 108
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 25/118 (21%)
Query: 32 LRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIR-----PDEGYYVGGTFVFTFQVSPI 86
LR+ +D +P C+ P+ +++ + +R P EG Y G +F +
Sbjct: 24 LRIKKD----PVPYICAEPLPS---NILEWHYVVRGPEMTPYEGGYYHGKLIFPRE---- 72
Query: 87 YPHEAPKVKCKTKVYHPNIDLEGN--VCLNILR---EDWKPVLNINTIIYGLFHLFTQ 139
+P + P + T PN + N +CL+I + W P +++TI+ GL +
Sbjct: 73 FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE 126
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 119 DWKPVLNINTIIYGLFHLFTQPNYEDPLNHE--AAAVLRDNPKL 160
DWK +L+I T+ +G FHL+ P N+ A + D+ K+
Sbjct: 252 DWKKLLSIETVDFGTFHLYPSHWGVSPENYAQWGAKWIEDHIKI 295
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase
(Tm0166) From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 21 KTPVKKQSAGELRLHRDISELNLP----KTCSITFPNGKDDLMNFEVSIRPDEGYYVGGT 76
K P+ K G R+ +S+L P KT I NGK + N +I +GY VG
Sbjct: 25 KRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSY 84
Query: 77 F 77
+
Sbjct: 85 Y 85
>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 75 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLF 134
G F S I +AP KC ++ PN + + KP N+N I YG
Sbjct: 256 GYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPND----------KPFQNVNRITYGAC 305
Query: 135 HLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171
P Y + A +R+ P+ + A+AG
Sbjct: 306 -----PRYVKQNTLKLATGMRNVPEKQTQGIFGAIAG 337
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 15/97 (15%)
Query: 75 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLF 134
G F S I +AP KC ++ PN + + KP N+N I YG
Sbjct: 256 GYFKIRSGKSSIMRSDAPIGKCNSECITPNGSIPND----------KPFQNVNRITYGAC 305
Query: 135 HLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171
P Y + A +R+ P+ + A+AG
Sbjct: 306 -----PRYVKQNTLKLATGMRNVPEKQTQGIFGAIAG 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,962,741
Number of Sequences: 62578
Number of extensions: 254869
Number of successful extensions: 647
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 113
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)