Query 030111
Match_columns 183
No_of_seqs 135 out of 1144
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 3.9E-50 8.5E-55 303.2 15.6 146 28-174 4-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 3.8E-50 8.2E-55 297.4 13.5 143 30-174 2-147 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 7.1E-47 1.5E-51 273.0 14.1 147 26-174 1-150 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.7E-46 8.1E-51 283.8 16.3 145 29-175 2-149 (152)
5 KOG0420 Ubiquitin-protein liga 100.0 4.2E-46 9.1E-51 280.2 14.8 182 1-183 1-184 (184)
6 PLN00172 ubiquitin conjugating 100.0 1.6E-45 3.6E-50 279.0 16.1 142 30-173 2-146 (147)
7 KOG0425 Ubiquitin-protein liga 100.0 4.7E-43 1E-47 260.1 15.1 144 28-172 4-163 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 6.9E-41 1.5E-45 245.2 14.6 148 26-174 1-157 (158)
9 KOG0421 Ubiquitin-protein liga 100.0 3.2E-41 7E-46 247.0 12.5 148 22-172 22-172 (175)
10 PF00179 UQ_con: Ubiquitin-con 100.0 4.6E-41 1E-45 252.6 13.5 136 33-169 1-140 (140)
11 KOG0426 Ubiquitin-protein liga 100.0 9.1E-41 2E-45 241.4 13.3 145 26-171 1-161 (165)
12 KOG0418 Ubiquitin-protein liga 100.0 9.9E-41 2.1E-45 254.5 13.0 144 30-175 4-154 (200)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 3.1E-40 6.6E-45 248.5 14.0 136 32-169 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 3.2E-39 6.9E-44 244.0 15.8 141 32-173 1-145 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 2.4E-36 5.2E-41 220.3 12.7 146 29-175 2-150 (153)
16 KOG0416 Ubiquitin-protein liga 100.0 1.1E-36 2.3E-41 228.9 9.3 145 29-176 3-150 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 2.9E-32 6.3E-37 205.5 9.1 146 23-170 4-152 (223)
18 KOG0427 Ubiquitin conjugating 100.0 3.4E-28 7.4E-33 175.9 9.6 124 21-147 7-135 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 5.2E-27 1.1E-31 182.8 10.7 111 26-140 2-118 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 5.6E-23 1.2E-27 160.8 12.5 140 30-171 20-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 5.7E-21 1.2E-25 151.7 9.3 111 26-139 8-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 3E-15 6.6E-20 138.8 5.6 108 29-138 851-970 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 5.4E-14 1.2E-18 102.6 7.9 110 29-139 5-123 (138)
24 KOG0895 Ubiquitin-conjugating 99.5 1.6E-13 3.5E-18 127.5 10.9 118 20-139 273-404 (1101)
25 KOG0897 Predicted ubiquitin-co 98.6 1.5E-07 3.2E-12 67.2 6.3 98 77-175 13-116 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.5 2.8E-07 6.1E-12 68.6 6.6 67 73-139 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.2 1.2E-06 2.6E-11 64.2 3.9 79 57-139 31-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.1 7.9E-06 1.7E-10 60.7 6.2 103 24-130 19-135 (161)
29 KOG2391 Vacuolar sorting prote 97.6 0.00042 9.2E-09 58.5 8.9 111 27-141 18-139 (365)
30 KOG3357 Uncharacterized conser 97.3 0.0007 1.5E-08 49.7 5.9 103 23-129 21-137 (167)
31 smart00591 RWD domain in RING 95.8 0.085 1.8E-06 36.7 8.0 40 60-99 24-65 (107)
32 PF05773 RWD: RWD domain; Int 95.2 0.058 1.3E-06 37.8 5.5 68 32-100 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 94.5 0.064 1.4E-06 41.3 4.4 62 78-139 56-126 (162)
34 PF14462 Prok-E2_E: Prokaryoti 93.0 1.1 2.3E-05 33.0 8.2 80 57-138 22-120 (122)
35 PF09765 WD-3: WD-repeat regio 87.1 1.1 2.3E-05 37.8 4.5 88 28-137 98-186 (291)
36 KOG0309 Conserved WD40 repeat- 81.8 5.7 0.00012 37.7 7.0 67 30-99 421-491 (1081)
37 PF14460 Prok-E2_D: Prokaryoti 69.8 7.7 0.00017 30.0 4.0 41 97-140 89-133 (175)
38 KOG4018 Uncharacterized conser 61.8 7.6 0.00016 31.1 2.6 22 76-97 50-71 (215)
39 PF06113 BRE: Brain and reprod 58.3 26 0.00057 30.0 5.4 34 71-104 61-95 (333)
40 PF09606 Med15: ARC105 or Med1 54.3 4.2 9.1E-05 38.9 0.0 25 75-99 714-738 (799)
41 TIGR03737 PRTRC_B PRTRC system 54.1 20 0.00043 29.2 3.8 39 98-140 131-173 (228)
42 KOG0662 Cyclin-dependent kinas 42.6 24 0.00052 28.2 2.6 56 89-144 167-226 (292)
43 PF06113 BRE: Brain and reprod 33.2 45 0.00098 28.7 3.0 22 77-98 308-329 (333)
44 cd00421 intradiol_dioxygenase 30.2 62 0.0013 24.1 3.1 24 74-97 65-89 (146)
45 KOG1047 Bifunctional leukotrie 29.0 52 0.0011 30.3 2.8 30 69-99 247-279 (613)
46 cd03457 intradiol_dioxygenase_ 28.9 66 0.0014 25.2 3.1 24 74-97 86-109 (188)
47 KOG4274 Positive cofactor 2 (P 28.3 2.6E+02 0.0056 26.2 7.0 86 31-144 621-708 (742)
48 cd05845 Ig2_L1-CAM_like Second 27.0 97 0.0021 21.4 3.4 26 72-99 16-41 (95)
49 KOG0177 20S proteasome, regula 25.4 31 0.00066 27.3 0.6 30 108-137 135-164 (200)
50 TIGR01228 hutU urocanate hydra 25.0 1.7E+02 0.0036 26.8 5.2 25 147-171 272-296 (545)
51 smart00340 HALZ homeobox assoc 24.4 49 0.0011 19.6 1.2 15 27-41 17-31 (44)
52 PF08203 RNA_polI_A14: Yeast R 22.6 73 0.0016 21.3 2.0 15 27-41 57-71 (76)
53 KOG4445 Uncharacterized conser 22.5 96 0.0021 26.5 3.0 25 75-99 45-69 (368)
54 cd03459 3,4-PCD Protocatechuat 22.1 1.1E+02 0.0023 23.3 3.1 24 74-97 72-100 (158)
55 PF13950 Epimerase_Csub: UDP-g 21.9 99 0.0021 19.5 2.4 19 119-137 37-55 (62)
56 PF11333 DUF3135: Protein of u 20.9 1.6E+02 0.0034 20.0 3.4 25 147-171 6-30 (83)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-50 Score=303.22 Aligned_cols=146 Identities=36% Similarity=0.682 Sum_probs=137.0
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
..+.+||++|++++ .+++++++. |..++|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 34999999999999 345677774 66455999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 105 IDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 105 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
|+.+|+||+++|++.|+|++++++||.+|+++|.+||+++|+|.|||++|++|+++|.++||++++++..
T Consensus 83 V~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 83 VDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred cCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-50 Score=297.38 Aligned_cols=143 Identities=31% Similarity=0.681 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 30 GELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
+.+||.+||+++ ++++++.+. +. .+|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence 456999999998 677888886 55 88999999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 107 LEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 107 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
..|.||+|+|+..|+|+++|..||.+|+++|.+||+++|++.++|.+|+.|+.+|++.||+|+++++.
T Consensus 80 ~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 80 SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-47 Score=272.96 Aligned_cols=147 Identities=29% Similarity=0.654 Sum_probs=138.9
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|+..|.+||++|++++ +++.|++.. |. ++|+..|.+.| ||.+|||+||.|++.|.|+++||.+||.|+|.+.+||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 5678999999999999 456666664 66 89999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
||||.+|.+|+|+|...|+|.|++.+||.+||+||.+|++++|+|.+||++|.+|+.+|++.|++.+.+.+.
T Consensus 79 PNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 79 PNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS 150 (152)
T ss_pred CCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887664
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.7e-46 Score=283.85 Aligned_cols=145 Identities=30% Similarity=0.564 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccc
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 105 (183)
++++||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 3679999999999 456676664 55 78999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 106 DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 106 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
+.+|.||+++|.+.|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+.+++.+
T Consensus 80 ~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 80 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764
No 5
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-46 Score=280.21 Aligned_cols=182 Identities=67% Similarity=1.115 Sum_probs=170.7
Q ss_pred CcchhhhHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcce--EEEEEeCCCCCCCCcEEE
Q 030111 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMN--FEVSIRPDEGYYVGGTFV 78 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~--w~~~igp~~tpyegg~f~ 78 (183)
|+++|+++++++++.++. .+|...+.+.++.||++|+.+++.+++++..++...+++.. ++++|.|..+.|+||.|.
T Consensus 1 M~~L~~~~~k~~~~~~~~-~~~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~ 79 (184)
T KOG0420|consen 1 MIKLFKLKKKKREEEQSR-YTSTRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR 79 (184)
T ss_pred CccHHHHHHhhhhhcccc-cccccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence 899999999888776533 33778889999999999999999999999888876666665 899999999999999999
Q ss_pred EEEEeCCCCCCCCCcceeeccceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCH
Q 030111 79 FTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNP 158 (183)
Q Consensus 79 ~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~ 158 (183)
|.+.+|+.||++||+|.+.|+||||||+.+|.||+++|+++|+|..++.+|+.+|+++|.+|+++||+|.+||..++.|+
T Consensus 80 F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~ 159 (184)
T KOG0420|consen 80 FKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR 159 (184)
T ss_pred EEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccccCC
Q 030111 159 KLFESNVRRAMAGGYVGQTFFIRCI 183 (183)
Q Consensus 159 ~~f~~~~~~~~~~~~~~~~~~~~~~ 183 (183)
+.|+..||..+.+|++++..|++||
T Consensus 160 e~F~~~Vr~~m~gg~v~~~~f~~~~ 184 (184)
T KOG0420|consen 160 EGFENNVRRAMSGGCVGQTSFDRCM 184 (184)
T ss_pred HHHHHHHHHHHhcCccCceeccccC
Confidence 9999999999999999999999986
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.6e-45 Score=279.03 Aligned_cols=142 Identities=35% Similarity=0.739 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 30 GELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
+.+||++|++++ ++++++.+. +. ++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence 468999999999 445666664 55 78999999999 99999999999999999999999999999999999999999
Q ss_pred CCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 107 LEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 107 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
.+|.||+++|.+.|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|+++||+|+.+++
T Consensus 80 ~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 80 SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-43 Score=260.06 Aligned_cols=144 Identities=32% Similarity=0.640 Sum_probs=132.8
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
+.+..-|+++|++| ++..+..+.+-+ .+|+++|.|.| ||++|+||||.|+..+.||.+||.+||+++|.|.|||||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN 82 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN 82 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence 34677889999999 455677776433 77999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccccC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 105 IDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 105 V~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
||++|.+|+++|. +.|.|.+|+++||++|.+||.+||.++|+|-|||+.|++|+++|.++|++|+.+
T Consensus 83 vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 83 VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 9999999999995 479999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 030111 172 G 172 (183)
Q Consensus 172 ~ 172 (183)
.
T Consensus 163 s 163 (171)
T KOG0425|consen 163 S 163 (171)
T ss_pred H
Confidence 4
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-41 Score=245.21 Aligned_cols=148 Identities=29% Similarity=0.510 Sum_probs=135.6
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecC----CCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPN----GKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
++..+..||+.|-+.+ +++-|.... |. +..|+..|++.| |+.|||||||.|.+++.||++||.+||+++|.+
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~Ak-P~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~ 79 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAK-PVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP 79 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeee-ccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC
Confidence 3567799999999999 566666553 43 235799999999 999999999999999999999999999999999
Q ss_pred cceeccccCCCcEeccccCCc--cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 99 KVYHPNIDLEGNVCLNILRED--WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 99 ~i~HPnV~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
++||||||++|.||+++|.+. |+|+.||.+||.+|+.||.+||+.+|+|.||...|..|+.+|+++||.++++++.
T Consensus 80 pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 80 PLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999754 9999999999999999999999999999999999999999999999999988763
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-41 Score=246.96 Aligned_cols=148 Identities=28% Similarity=0.551 Sum_probs=138.2
Q ss_pred CCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 22 TPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+.+.......+||+.||..| ...+|++. +|+ .+|++.|.++| ||.+|+|+|-.|++.+.||.+||++||.|+|.|
T Consensus 22 m~v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFlt 99 (175)
T KOG0421|consen 22 MAVVDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLT 99 (175)
T ss_pred cccccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeec
Confidence 33445678899999999999 66788888 588 78999999999 999999999999999999999999999999999
Q ss_pred cceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcC
Q 030111 99 KVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGG 172 (183)
Q Consensus 99 ~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 172 (183)
++||||||..|.||+|+|.+.|+..|+++.||++|+++|-+||.++|+|..||+++. |+++|++.+.+++.+.
T Consensus 100 pc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 100 PCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999887653
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.6e-41 Score=252.65 Aligned_cols=136 Identities=38% Similarity=0.742 Sum_probs=122.5
Q ss_pred HHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCCC
Q 030111 33 RLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEG 109 (183)
Q Consensus 33 RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G 109 (183)
||++||+++ +.+.++.+.... .+|+.+|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 899999999 677888886433 35999999999 99999999999999999999999999999999999999999999
Q ss_pred cEeccccCC-ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 030111 110 NVCLNILRE-DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 169 (183)
Q Consensus 110 ~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 169 (183)
.||+++|.. .|+|++++.+||.+|+++|.+|+.++++|.+|+++|++|+++|+++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 599999999999999999999999999999999999999999999999983
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-41 Score=241.44 Aligned_cols=145 Identities=28% Similarity=0.561 Sum_probs=136.9
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
+...|+|||++||++| +.++|+... |.+++|++.|.+.| ||++|+|+||+|..++.||.+||.+||+++|...+||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 3567899999999999 677887664 88899999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 030111 103 PNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 169 (183)
Q Consensus 103 PnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 169 (183)
|||+.+|++|+++|. +.|+|..+++.||+++.+||.+||-++.+|.+|+.++++|+++|++.|+..+
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999985 5799999999999999999999999999999999999999999999999988
Q ss_pred hc
Q 030111 170 AG 171 (183)
Q Consensus 170 ~~ 171 (183)
.+
T Consensus 160 rK 161 (165)
T KOG0426|consen 160 RK 161 (165)
T ss_pred HH
Confidence 75
No 12
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-41 Score=254.52 Aligned_cols=144 Identities=28% Similarity=0.493 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhcCC-----CCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceec
Q 030111 30 GELRLHRDISELNL-----PKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 103 (183)
Q Consensus 30 ~~~RL~~El~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 103 (183)
+.+||++|++++.. ..++.+. ..++|+.+..+.| ||+|||||||+|.++|.+|++|||+||+|+|.|+||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve--~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVE--MVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEE--EccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecC
Confidence 78999999999933 2344443 3368999999999 99999999999999999999999999999999999999
Q ss_pred cccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 104 NIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 104 nV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
||++ +|.||+|++.+.|.+++|++.+|++|+++|..|++.+|.+..+|++|.+|++.|.+.||.|...++-+
T Consensus 82 nVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 82 NVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9998 99999999999999999999999999999999999999999999999999999999999998776644
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.1e-40 Score=248.51 Aligned_cols=136 Identities=35% Similarity=0.710 Sum_probs=127.0
Q ss_pred HHHHHHHHhcC--CCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCC
Q 030111 32 LRLHRDISELN--LPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 108 (183)
Q Consensus 32 ~RL~~El~~l~--~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 108 (183)
+||++|+++++ .+.++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.++++||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCC
Confidence 79999999993 34566554 44 67999999999 9999999999999999999999999999999999999999999
Q ss_pred CcEeccccCCc-cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 030111 109 GNVCLNILRED-WKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 169 (183)
Q Consensus 109 G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 169 (183)
|.||++++... |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|+++|++|+
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 80 GKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999877 99999999999999999999999999999999999999999999999874
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.2e-39 Score=244.04 Aligned_cols=141 Identities=35% Similarity=0.698 Sum_probs=130.9
Q ss_pred HHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCC
Q 030111 32 LRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 108 (183)
Q Consensus 32 ~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 108 (183)
+||++|++++ +.++++.+ .+..++|+++|+++| ||.+|||+||.|++.|.||++||.+||+|+|.++++||||+.+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v-~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISA-YPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEE-EECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 5999999999 44556655 355345999999999 9999999999999999999999999999999999999999999
Q ss_pred CcEeccccC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 109 GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 109 G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
|.+|++++. ++|+|++++++||.+|+++|.+|+.++++|.+||++|.+|++.|+++|++++.+++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 89999999999999999999999999999999999999999999999999998763
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=220.29 Aligned_cols=146 Identities=30% Similarity=0.539 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhcCC--CCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 29 AGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~El~~l~~--~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
.+.+||++||.++.. ...+. .+...+.|++.|++.|-|.+-||..|.|.++|.||.+|||+||+|.|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~r-n~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFR-NIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHh-hhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 367999999999932 22221 234557899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccccC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 107 LEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 107 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
+.|.+|+.++. ++|.|+..++++|..|..++.+|+++.|++.|+|..|.+|+..|.++|.+++++++..
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 99999999995 8899999999999999999999999999999999999999999999999999998753
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=228.93 Aligned_cols=145 Identities=30% Similarity=0.582 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccC
Q 030111 29 AGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 107 (183)
+..|||..|...|- .++..+.+ ..+++.+++|.+ ||.+|||+||+++++|.+|++||++.|.|.|.++||||||+.
T Consensus 3 ~~~rRid~Dv~KL~-~s~yeV~~--ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLL-MSDYEVTI--INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHH-hcCCeEEE--ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 34689999999982 23334443 256799999999 999999999999999999999999999999999999999999
Q ss_pred -CCcEeccccCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 108 -EGNVCLNILREDWKPVLNINTIIYG-LFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 108 -~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
+|.||+|.+++.|+|.+.+..|+.. |-.||..||+.+|+|.|||.+|.+++++|+++||+++++|+...
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9999999999999999999999976 45899999999999999999999999999999999999998654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-32 Score=205.52 Aligned_cols=146 Identities=27% Similarity=0.517 Sum_probs=134.6
Q ss_pred CCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 23 PVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 23 ~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
+..-.....+.+.+|++.+ .++.|+.+. +. +.|+....+.| ||.||||++|+|+..+.+..+||.+||+-+|+|+
T Consensus 4 nenlpp~vik~~~kEl~~l~~~PPdGIKV~-~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK 81 (223)
T KOG0423|consen 4 NENLPPNVIKQLAKELKSLDESPPDGIKVV-VN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK 81 (223)
T ss_pred ccCCChHHHHHHHHHHHhcccCCCCceEEe-cC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee
Confidence 3445566788899999999 566777774 43 78899999999 9999999999999999999999999999999999
Q ss_pred ceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHh
Q 030111 100 VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMA 170 (183)
Q Consensus 100 i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~ 170 (183)
||||||-.+|.||+..|..+|+|..+|..||..|.++|..|++++.+|.+|.++..+|.++|.+.||-++.
T Consensus 82 IFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 82 IFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred eccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997754
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-28 Score=175.91 Aligned_cols=124 Identities=21% Similarity=0.479 Sum_probs=107.8
Q ss_pred CCCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 21 KTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 21 ~~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.+....+..+++||++||.++ ++|+|.... . .+|+.+|++-+ |.+||.|+|..|.+.+.||+.||+..|.|.|.
T Consensus 7 ~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~--v-~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~ 83 (161)
T KOG0427|consen 7 PSRKALSKIATNRLQKELSEWQNNPPTGFKHR--V-TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFV 83 (161)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCcceee--c-ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEe
Confidence 344556788999999999999 445555554 3 88999999999 99999999999999999999999999999999
Q ss_pred cc-ceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcC-CCCCCccc
Q 030111 98 TK-VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQ-PNYEDPLN 147 (183)
Q Consensus 98 t~-i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~-p~~~~~~n 147 (183)
.+ ..||+|+.||.||+++|.+.|+|++++.+|.++|.+||.+ .....|.+
T Consensus 84 ~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 84 GPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred cCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 76 4699999999999999999999999999999999999986 33344443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-27 Score=182.77 Aligned_cols=111 Identities=23% Similarity=0.497 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
++..+.+||++||+.| ++.+++... |. .+|+++||.++ ||+||||+||.|+.+|.||.+||++||.|+++|| .
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~-P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--N 77 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVAR-PN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--N 77 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccC-CC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--C
Confidence 4678999999999999 555666553 65 89999999999 9999999999999999999999999999999988 3
Q ss_pred ccccCCCcEeccccC---CccCCCCCHHHHHHHHHHhhcCC
Q 030111 103 PNIDLEGNVCLNILR---EDWKPVLNINTIIYGLFHLFTQP 140 (183)
Q Consensus 103 PnV~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p 140 (183)
..+-.+-++|+++-. +.|+|+|++.+||.+|.++|.+-
T Consensus 78 GRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred CceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 344457789998874 78999999999999999999863
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.6e-23 Score=160.77 Aligned_cols=140 Identities=22% Similarity=0.367 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCC--CCCcceeeccceeccc
Q 030111 30 GELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPH--EAPKVKCKTKVYHPNI 105 (183)
Q Consensus 30 ~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV 105 (183)
-.-.|+.||..+ ++.+|+++ +|. ..|-+.|-++|....+.|.||+|+|+|.+|++||. +.|+|.|.+.++||+|
T Consensus 20 qey~llAEf~lV~~ekL~gIyv-iPS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i 97 (258)
T KOG0429|consen 20 QEYALLAEFVLVCREKLDGIYV-IPS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI 97 (258)
T ss_pred HHHHHHHHHHHHHhccCCceEE-ccc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence 344566677766 67788888 487 77888999999767779999999999999999996 6899999999999999
Q ss_pred cC-CCcEeccccCCccCCC-CCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 106 DL-EGNVCLNILREDWKPV-LNINTIIYGLFHLFTQPNYEDP--LNHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 106 ~~-~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~p~~~~~--~n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
++ ++.+|+......|+.. .+|+++|..++.+|++|+...+ .|++|+.+|++++++|.++|++|+..
T Consensus 98 cp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 98 CPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred CCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99 9999999888779765 7899999999999999987765 59999999999999999999999764
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.7e-21 Score=151.72 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 26 KQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
..+.+.|||++|.++++.|...+...|. ++|+++|+++| ||.||-||||+|+.+|.||.+||++||.+..+|+ +..
T Consensus 8 ~KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGR 84 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGR 84 (314)
T ss_pred ccCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCc
Confidence 3578899999999999877777776777 99999999999 9999999999999999999999999999998887 334
Q ss_pred ccCCCcEeccccC---CccCCCCCHHHHHHHHHHhhcC
Q 030111 105 IDLEGNVCLNILR---EDWKPVLNINTIIYGLFHLFTQ 139 (183)
Q Consensus 105 V~~~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~ 139 (183)
+-.+-+||+++.. +.|.|+|+|+..|..|..+|-.
T Consensus 85 FE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 85 FEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 4457789999885 7899999999999999988863
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3e-15 Score=138.75 Aligned_cols=108 Identities=25% Similarity=0.430 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecc--ceec
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK--VYHP 103 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 103 (183)
...+..+.|++-+ ..+.++.+.. .++-+.-..+.| |+.+|||..|.|.|++.||++||.+||.+...+. .++|
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~--~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRA--YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEe--chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 5666677777777 5677777753 245444567788 9999999999999999999999999999999976 6799
Q ss_pred cccCCCcEeccccC-------CccCCCCCHHHHHHHHHHhhc
Q 030111 104 NIDLEGNVCLNILR-------EDWKPVLNINTIIYGLFHLFT 138 (183)
Q Consensus 104 nV~~~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~ 138 (183)
|.|.+|++|+++|+ +-|+|+.++.++|.+||.|.-
T Consensus 929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVL 970 (1101)
T ss_pred ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhc
Confidence 99999999999995 569999999999999999865
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.4e-14 Score=102.63 Aligned_cols=110 Identities=21% Similarity=0.347 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCC---CCCccEeecCCCCC--cceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 29 AGELRLHRDISELNL---PKTCSITFPNGKDD--LMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 29 ~~~~RL~~El~~l~~---~~~~~~~~~~~~~n--~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
....||.+|+.+-++ +..+++.+.+ .+| +..|..+| ||+.|+||+.+|.++|.+.++||..||.|+|.+++.-
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm 83 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM 83 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence 345679999888733 3345555444 444 45899999 9999999999999999999999999999999999999
Q ss_pred ccccC-CCcEecccc--CCccCCCCCHHHHHHHHHHhhcC
Q 030111 103 PNIDL-EGNVCLNIL--REDWKPVLNINTIIYGLFHLFTQ 139 (183)
Q Consensus 103 PnV~~-~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~~ 139 (183)
..|+. +|.+.-..+ ..+|.-.+++..+|..++.+|..
T Consensus 84 ~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 84 NGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 99987 778776444 37899999999999999976543
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-13 Score=127.49 Aligned_cols=118 Identities=26% Similarity=0.508 Sum_probs=103.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCccee
Q 030111 20 GKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKC 96 (183)
Q Consensus 20 ~~~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 96 (183)
+.+....+....+|+++|++.+ +.+.++.+. +. +..+....+.| ||.+|||++|+|.|.|.||..||..||.+.+
T Consensus 273 ~~~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~ 350 (1101)
T KOG0895|consen 273 GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKY 350 (1101)
T ss_pred CCCCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEE
Confidence 4455667888999999999999 567776664 55 67788899999 9999999999999999999999999999999
Q ss_pred ecc---ceeccccCCCcEeccccC-------CccCCC-CCHHHHHHHHHHhhcC
Q 030111 97 KTK---VYHPNIDLEGNVCLNILR-------EDWKPV-LNINTIIYGLFHLFTQ 139 (183)
Q Consensus 97 ~t~---i~HPnV~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~ 139 (183)
+|. .+.||.|.+|+||+++|. +.|+|. .++.++|.+|+.++.+
T Consensus 351 lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 351 LTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred eeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 977 789999999999999884 569998 8999999999998874
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=67.18 Aligned_cols=98 Identities=14% Similarity=0.299 Sum_probs=72.5
Q ss_pred EEEEEEeCCCCCCCCCcceeeccce-eccccCCCcEeccccC-CccCCCCCHHHHHHHHHHhhcCCC--CCCcccHHHHH
Q 030111 77 FVFTFQVSPIYPHEAPKVKCKTKVY-HPNIDLEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPN--YEDPLNHEAAA 152 (183)
Q Consensus 77 f~~~i~fp~~YP~~pP~v~f~t~i~-HPnV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~--~~~~~n~~aa~ 152 (183)
.-+.+.|+++||+.||.++...|+- -.-|-.+|.||+.++. ++|+.+++++.++++|-.++.... ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 4567889999999999998665432 2233358999999995 789999999999999999998764 4445544433
Q ss_pred HHhh--CHHHHHHHHHHHHhcCCCC
Q 030111 153 VLRD--NPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 153 ~~~~--~~~~f~~~~~~~~~~~~~~ 175 (183)
+|.. -.+.|+..++..-+.|++.
T Consensus 92 ~~s~~qa~~sfksLv~~heksg~~t 116 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHEKSGWVT 116 (122)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcC
Confidence 4544 3467888888877777543
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.52 E-value=2.8e-07 Score=68.59 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=60.6
Q ss_pred CCcEEEEEEEeCCCCCCCCCcceeeccc---eeccccCCCcEec---cccCCccCCCCCHHHHHHHHHHhhcC
Q 030111 73 VGGTFVFTFQVSPIYPHEAPKVKCKTKV---YHPNIDLEGNVCL---NILREDWKPVLNINTIIYGLFHLFTQ 139 (183)
Q Consensus 73 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 139 (183)
.|+.+.+.|.||+.||..||.|....+. +=|||+.+|.+|+ ...-+.|.|...+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6899999999999 66678899999999999999999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.23 E-value=1.2e-06 Score=64.25 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=53.1
Q ss_pred CcceEEEEEeCCCCCCCCcEE--EEEEEeCCCCCCCCCcceeeccc-----eeccccCCCcEeccccCCccCC-CCCHHH
Q 030111 57 DLMNFEVSIRPDEGYYVGGTF--VFTFQVSPIYPHEAPKVKCKTKV-----YHPNIDLEGNVCLNILREDWKP-VLNINT 128 (183)
Q Consensus 57 n~~~w~~~igp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~G~icl~~l~~~W~p-~~~i~~ 128 (183)
.+....++|. -.|.|..| .+.|.+|.+||..||.+...... -+.+|+.+|+|.+..| +.|.+ ..++.+
T Consensus 31 ~LL~L~Gtip---i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 31 LLLCLYGTIP---ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEE---ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred eEEEEecCcc---cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 3445555551 23556555 78889999999999999776321 2449999999999888 46766 789999
Q ss_pred HHHHHHHhhcC
Q 030111 129 IIYGLFHLFTQ 139 (183)
Q Consensus 129 il~~i~~ll~~ 139 (183)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999888763
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.12 E-value=7.9e-06 Score=60.70 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCCCcHHHHHHHHHHHhc------CC-CCCccEeecCCCCCcceEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCcc
Q 030111 24 VKKQSAGELRLHRDISEL------NL-PKTCSITFPNGKDDLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKV 94 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l------~~-~~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~v 94 (183)
.+.......||..||..| ++ ...-.+.+.+ +.+-+.|.+.+ -...--|| |.+++.+|..||..||.|
T Consensus 19 Prd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~kYE---F~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 19 PRDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLKYE---FDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEEEE---EEEEEE--TTTTTS----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeeeEE---EeeecCCCccCCCCCcce
Confidence 445588899999999998 22 2333455554 55667898888 45555676 889999999999999999
Q ss_pred eeecc-ceeccccCCCcEeccccC-Ccc---CCCCCHHHHH
Q 030111 95 KCKTK-VYHPNIDLEGNVCLNILR-EDW---KPVLNINTII 130 (183)
Q Consensus 95 ~f~t~-i~HPnV~~~G~icl~~l~-~~W---~p~~~i~~il 130 (183)
....- --..-.+..|+||++.-. .-| .|.++|...|
T Consensus 95 ~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 95 ALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred eccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 86521 234456779999998654 446 5567776554
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00042 Score=58.47 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=74.6
Q ss_pred CcHHHHHHHHHHHhc-C-CCCCccEeecCCC-CCcceEEEEEeCCCCCCCCcEE--EEEEEeCCCCCCCCCcceeecc--
Q 030111 27 QSAGELRLHRDISEL-N-LPKTCSITFPNGK-DDLMNFEVSIRPDEGYYVGGTF--VFTFQVSPIYPHEAPKVKCKTK-- 99 (183)
Q Consensus 27 ~~~~~~RL~~El~~l-~-~~~~~~~~~~~~~-~n~~~w~~~igp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~-- 99 (183)
-..+.+-+...+... . .+..-.+.+.++. .+++...++| -++|.|..| .+.|.+.+.||..||.+.....
T Consensus 18 ~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTI---p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~ 94 (365)
T KOG2391|consen 18 KDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTI---PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTST 94 (365)
T ss_pred hhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcc---cccccCCcccceEEEEecccCCCCCCeEEecCCch
Confidence 345555565555555 2 2333344444433 2455555555 334555554 6888899999999999865521
Q ss_pred ---ceeccccCCCcEeccccCCccC-CCCCHHHHHHHHHHhhcCCC
Q 030111 100 ---VYHPNIDLEGNVCLNILREDWK-PVLNINTIIYGLFHLFTQPN 141 (183)
Q Consensus 100 ---i~HPnV~~~G~icl~~l~~~W~-p~~~i~~il~~i~~ll~~p~ 141 (183)
--|-+|+.+|.|.+..|. .|. |++++..++..+...|.++.
T Consensus 95 M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 95 MIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred hhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCC
Confidence 128999999999999995 575 56889999999999988743
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0007 Score=49.71 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=63.2
Q ss_pred CCCCCcHHHHHHHHHHHhc------CCCCC-ccEeecCCCCCcceEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCc
Q 030111 23 PVKKQSAGELRLHRDISEL------NLPKT-CSITFPNGKDDLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPK 93 (183)
Q Consensus 23 ~~~~~~~~~~RL~~El~~l------~~~~~-~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~ 93 (183)
+.+.-....+||..||+.+ ++..+ -.+.+.. +..-+.|.+.+ ...---|| |.+++.+|-.||..+|.
T Consensus 21 gprd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrles-n~egtrwfgkcwy~hnllkye---fdvefdipityp~tape 96 (167)
T KOG3357|consen 21 GPRDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLES-NKEGTRWFGKCWYVHNLLKYE---FDVEFDIPITYPTTAPE 96 (167)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhCcccCCcceEecc-CccccceehhhhHhhhhhhhe---eeeeeccccccCCCCcc
Confidence 3455677899999999998 22222 2333332 23345666665 23333455 78888899999999999
Q ss_pred ceeecc-ceeccccCCCcEecc-ccCCccC---CCCCHHHH
Q 030111 94 VKCKTK-VYHPNIDLEGNVCLN-ILREDWK---PVLNINTI 129 (183)
Q Consensus 94 v~f~t~-i~HPnV~~~G~icl~-~l~~~W~---p~~~i~~i 129 (183)
+....- --.-..+..|.||+. .+..-|. |..+|...
T Consensus 97 ialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred ccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 875411 112245668999994 4455574 44555443
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.80 E-value=0.085 Score=36.72 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred eEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 60 NFEVSIRPDEG--YYVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 60 ~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
.+.+.+.+... .-..-.+.+.+.||++||..+|.|.+.+.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 44555533321 23345589999999999999999987653
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.19 E-value=0.058 Score=37.84 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-e--CCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccc
Q 030111 32 LRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-R--PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV 100 (183)
Q Consensus 32 ~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-g--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
.+...|+..|+..-+-.. ......+...+.+.+ . ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456677777732111111 111133344455555 1 2334444568999999999999999999876553
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.51 E-value=0.064 Score=41.27 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=49.1
Q ss_pred EEEEEeCCCCCCCCCcceeeccce---eccccCC-----CcEeccccC-CccCCCCCHHHHHHHHHHhhcC
Q 030111 78 VFTFQVSPIYPHEAPKVKCKTKVY---HPNIDLE-----GNVCLNILR-EDWKPVLNINTIIYGLFHLFTQ 139 (183)
Q Consensus 78 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~ 139 (183)
.+.|.|+.+||..+|.|.+....| +||++.. ..+|+.--. ..|.+..++..+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 467899999999999877764433 5788765 679985543 5699999999999999988764
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=92.95 E-value=1.1 Score=32.95 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=51.3
Q ss_pred CcceEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCCCcE--ecccc--------------CC
Q 030111 57 DLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNV--CLNIL--------------RE 118 (183)
Q Consensus 57 n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~i--cl~~l--------------~~ 118 (183)
.-..|.++= .-+.+.|.+..-.+-|.+|..||..+|.+.+..|-.... ..|.+ |-+.. ..
T Consensus 22 g~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~ 99 (122)
T PF14462_consen 22 GGRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNN 99 (122)
T ss_pred CCccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCC
Confidence 335576644 356778999999999999999999998776655432211 11223 22211 14
Q ss_pred ccCCCC-CHHHHHHHHHHhhc
Q 030111 119 DWKPVL-NINTIIYGLFHLFT 138 (183)
Q Consensus 119 ~W~p~~-~i~~il~~i~~ll~ 138 (183)
.|+|.. ++.+.|..|...|.
T Consensus 100 ~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 100 PWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCCCCcHHHHHHHHHHHHh
Confidence 577764 58888887776653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.06 E-value=1.1 Score=37.76 Aligned_cols=88 Identities=17% Similarity=0.343 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccC
Q 030111 28 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 28 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 107 (183)
.....+|.+|+.++..+..+.+.+ ++++....+.+.... ....++|.+|.+||.++|.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~---d~~ls~i~l~~~D~~-----R~H~l~l~l~~~yp~~~p~~~~~~P~------- 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQF---DDDLSTIKLKIFDSS-----RQHYLELKLPSNYPFEPPSCSLDLPI------- 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE----CCCSEEEEEEETTC-----EEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred cHHHHHHHHHHHHhccccceEEec---CCCccEEEEEEEcCC-----ceEEEEEEECCCCCCCCceeeCCCCc-------
Confidence 667889999999996666666643 457777777773221 45789999999999999976543332
Q ss_pred CCcEeccccCCccCC-CCCHHHHHHHHHHhh
Q 030111 108 EGNVCLNILREDWKP-VLNINTIIYGLFHLF 137 (183)
Q Consensus 108 ~G~icl~~l~~~W~p-~~~i~~il~~i~~ll 137 (183)
.+...|.+ ..++.+++...+..+
T Consensus 163 -------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp --------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -------chhhhhcccccCHHHHHHHHHHHH
Confidence 11236888 678877776655544
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.77 E-value=5.7 Score=37.68 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhc-CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEE-EEEEEeCCCCCCC-CCcceeecc
Q 030111 30 GELRLHRDISEL-NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTF-VFTFQVSPIYPHE-APKVKCKTK 99 (183)
Q Consensus 30 ~~~RL~~El~~l-~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f-~~~i~fp~~YP~~-pP~v~f~t~ 99 (183)
.-+-|.+|+.-| ++-+.+.+...+ -.-..-.+.+ +|.. +-.|-+| ++.|.||.+||.+ +|.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~~nV~fEkid--va~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKIRNVNFEKID--VADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhccccccceEeec--cccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 446678888888 556666664222 1223455666 5533 3344444 8899999999995 799999854
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=69.78 E-value=7.7 Score=30.00 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=25.3
Q ss_pred eccceec---cccCCCcEeccccCCccCCCCCHHHHHHHHHHh-hcCC
Q 030111 97 KTKVYHP---NIDLEGNVCLNILREDWKPVLNINTIIYGLFHL-FTQP 140 (183)
Q Consensus 97 ~t~i~HP---nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~l-l~~p 140 (183)
.|+.||. ||+.+|.||+.... .|.......+..+... |.++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 4667775 99999999997642 3444334445555544 4444
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.81 E-value=7.6 Score=31.14 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=19.4
Q ss_pred EEEEEEEeCCCCCCCCCcceee
Q 030111 76 TFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.+.+.+.++.+||..+|.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999433
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=58.29 E-value=26 Score=30.04 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=28.9
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCcceee-ccceecc
Q 030111 71 YYVGGTFVFTFQVSPIYPHEAPKVKCK-TKVYHPN 104 (183)
Q Consensus 71 pyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPn 104 (183)
||-|-..+-+|.|...||..||.+.|. ..-|+|.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 677888899999999999999999996 4447774
No 40
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=54.26 E-value=4.2 Score=38.85 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=0.0
Q ss_pred cEEEEEEEeCCCCCCCCCcceeecc
Q 030111 75 GTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
.+=.+.|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 4456889999999999999877544
No 41
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=54.13 E-value=20 Score=29.18 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=26.7
Q ss_pred ccceec---cccCCCcEeccccCCccCCC-CCHHHHHHHHHHhhcCC
Q 030111 98 TKVYHP---NIDLEGNVCLNILREDWKPV-LNINTIIYGLFHLFTQP 140 (183)
Q Consensus 98 t~i~HP---nV~~~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~p 140 (183)
|+.||. ||+.+|+||+.... .|. .++.+ +......|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 446665 99999999997663 454 45666 77777666653
No 42
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=42.61 E-value=24 Score=28.21 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=45.5
Q ss_pred CCCCcceeeccceeccccC--CCcEeccccCCcc--CCCCCHHHHHHHHHHhhcCCCCCC
Q 030111 89 HEAPKVKCKTKVYHPNIDL--EGNVCLNILREDW--KPVLNINTIIYGLFHLFTQPNYED 144 (183)
Q Consensus 89 ~~pP~v~f~t~i~HPnV~~--~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~~ 144 (183)
..||.|-|-.+.|...|+- .|-|--.+...+| .|+-++.+-|..|..+|..|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999999986 5655556666677 788999999999999999887554
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=33.22 E-value=45 Score=28.65 Aligned_cols=22 Identities=14% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCCCCCCcceeec
Q 030111 77 FVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 77 f~~~i~fp~~YP~~pP~v~f~t 98 (183)
|-+.|.+|..||...|.++|.+
T Consensus 308 flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 308 FLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEeccCCCCCcCCeEEEEe
Confidence 8889999999999999999986
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=30.24 E-value=62 Score=24.08 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.1
Q ss_pred CcEEEEEEEeCCCCC-CCCCcceee
Q 030111 74 GGTFVFTFQVSPIYP-HEAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP-~~pP~v~f~ 97 (183)
.|.|.|.-.+|-.|| ..||.|-|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 388999999999999 899988665
No 45
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=29.00 E-value=52 Score=30.34 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=25.1
Q ss_pred CCCCCCcEEEEEEEeCCCCCC---CCCcceeecc
Q 030111 69 EGYYVGGTFVFTFQVSPIYPH---EAPKVKCKTK 99 (183)
Q Consensus 69 ~tpyegg~f~~~i~fp~~YP~---~pP~v~f~t~ 99 (183)
-+||.=|.|-+ +.+|++||+ +-|-++|.|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 45777788885 678999999 6899999988
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=28.87 E-value=66 Score=25.23 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.3
Q ss_pred CcEEEEEEEeCCCCCCCCCcceee
Q 030111 74 GGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.|.|.|+=.+|--||..+|.|-|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999988766
No 47
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=28.32 E-value=2.6e+02 Score=26.16 Aligned_cols=86 Identities=8% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCC
Q 030111 31 ELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI--RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLE 108 (183)
Q Consensus 31 ~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 108 (183)
-.-|+.|+..|+..-.+.+.--.-.+| +.++++ .-..-| .++|..|.+||...
T Consensus 621 p~vlqgElarLD~kF~v~ld~~~~~nN--~I~liCklddk~lP------Pl~lsVP~~YPaq~----------------- 675 (742)
T KOG4274|consen 621 PEVLQGELARLDAKFEVDLDHQRHDNN--HIILICKLDDKQLP------PLRLSVPTTYPAQN----------------- 675 (742)
T ss_pred hHHHHHHHHhhccceeecCCcccccCC--eeEEEEEecCCCCC------Ceeeeccccccccc-----------------
Confidence 345789999995433333321111234 344444 344444 48999999999754
Q ss_pred CcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCC
Q 030111 109 GNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYED 144 (183)
Q Consensus 109 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~ 144 (183)
+|.|.. -.+..++-+.++=.++++-|.-|...+
T Consensus 676 --~~vdr~-~~y~a~pflq~vq~s~~~RlsrP~~~S 708 (742)
T KOG4274|consen 676 --VTVDRA-VIYLAAPFLQDVQNSVYERLSRPGLSS 708 (742)
T ss_pred --hhhhhH-HHhhhcHHHHHHHHHHHHHHccCCcch
Confidence 333211 012334445566666666665666554
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.98 E-value=97 Score=21.39 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=19.5
Q ss_pred CCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 72 YVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 72 yegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
-||.-+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45666777777788888 588888754
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=31 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.1
Q ss_pred CCcEeccccCCccCCCCCHHHHHHHHHHhh
Q 030111 108 EGNVCLNILREDWKPVLNINTIIYGLFHLF 137 (183)
Q Consensus 108 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll 137 (183)
.+.+|++++...|+|.+|++.-+.-++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 567999999999999999887766555544
No 50
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=25.00 E-value=1.7e+02 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.4
Q ss_pred cHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 147 NHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 147 n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
-.|+.++..+|++.|.+.|++++++
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~r 296 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAK 296 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4578888889999999999998765
No 51
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.39 E-value=49 Score=19.58 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=11.9
Q ss_pred CcHHHHHHHHHHHhc
Q 030111 27 QSAGELRLHRDISEL 41 (183)
Q Consensus 27 ~~~~~~RL~~El~~l 41 (183)
.....+||++|+.+|
T Consensus 17 LteeNrRL~ke~~eL 31 (44)
T smart00340 17 LTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345578999999988
No 52
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=22.60 E-value=73 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.5
Q ss_pred CcHHHHHHHHHHHhc
Q 030111 27 QSAGELRLHRDISEL 41 (183)
Q Consensus 27 ~~~~~~RL~~El~~l 41 (183)
.-+-.|||++||+-|
T Consensus 57 ~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 57 VLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCC
Confidence 455689999999988
No 53
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=22.45 E-value=96 Score=26.48 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred cEEEEEEEeCCCCCCCCCcceeecc
Q 030111 75 GTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577889999999999999998876
No 54
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.15 E-value=1.1e+02 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=20.8
Q ss_pred CcEEEEEEEeCCCCC-----CCCCcceee
Q 030111 74 GGTFVFTFQVSPIYP-----HEAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP-----~~pP~v~f~ 97 (183)
.|.|.|.-.+|--|| ..||.|-|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 388999999999999 789988665
No 55
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=21.93 E-value=99 Score=19.52 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=12.1
Q ss_pred ccCCCCCHHHHHHHHHHhh
Q 030111 119 DWKPVLNINTIIYGLFHLF 137 (183)
Q Consensus 119 ~W~p~~~i~~il~~i~~ll 137 (183)
+|.|.++|.+++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998776543
No 56
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=20.89 E-value=1.6e+02 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=19.6
Q ss_pred cHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 147 NHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 147 n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
-.+...++++||++|++..++.+.+
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3567789999999999887776543
Done!