Query 030111
Match_columns 183
No_of_seqs 135 out of 1144
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o2u_A NEDD8-conjugating enzym 100.0 3.1E-52 1.1E-56 326.9 18.7 180 1-183 3-188 (190)
2 2nvu_C NEDD8-conjugating enzym 100.0 4.7E-52 1.6E-56 323.4 15.5 177 1-183 3-179 (180)
3 1y8x_A Ubiquitin-conjugating e 100.0 2.8E-49 9.6E-54 302.6 16.9 157 26-183 3-159 (160)
4 1zdn_A Ubiquitin-conjugating e 100.0 6.3E-48 2.2E-52 294.6 14.9 150 22-173 6-158 (158)
5 4gpr_A Ubiquitin-conjugating e 100.0 1.8E-47 6.3E-52 290.0 16.7 146 27-174 2-150 (151)
6 2aak_A UBC1, ubiquitin conjuga 100.0 2.9E-47 9.9E-52 289.2 16.1 148 26-175 1-151 (152)
7 2c2v_B Ubiquitin-conjugating e 100.0 1.2E-47 4.2E-52 291.8 12.6 147 27-175 3-152 (154)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.9E-47 1.3E-51 293.0 15.1 147 26-174 1-150 (169)
9 2ayv_A Ubiquitin-conjugating e 100.0 6.5E-47 2.2E-51 291.0 16.3 146 26-173 18-166 (166)
10 2ucz_A UBC7, ubiquitin conjuga 100.0 5.8E-47 2E-51 291.1 15.5 147 26-173 1-163 (165)
11 2c4o_A Ubiquitin-conjugating e 100.0 1.5E-46 5E-51 288.8 17.6 146 26-173 16-164 (165)
12 1z2u_A Ubiquitin-conjugating e 100.0 9.4E-47 3.2E-51 285.8 15.9 145 27-173 2-149 (150)
13 3h8k_A Ubiquitin-conjugating e 100.0 1.8E-46 6.1E-51 288.1 17.3 144 28-172 2-161 (164)
14 2e2c_A Ubiquitin conjugating e 100.0 1.1E-46 3.8E-51 287.1 15.4 148 23-173 3-153 (156)
15 1yh2_A HSPC150 protein similar 100.0 3.6E-46 1.2E-50 287.7 17.1 148 27-176 2-156 (169)
16 3rcz_B SUMO-conjugating enzyme 100.0 3.7E-46 1.3E-50 286.0 16.3 149 24-173 5-162 (163)
17 2r0j_A Ubiquitin carrier prote 100.0 2E-46 6.8E-51 283.8 14.5 143 31-175 3-148 (149)
18 2bep_A Ubiquitin-conjugating e 100.0 3.2E-46 1.1E-50 285.4 15.7 148 25-174 4-158 (159)
19 3fn1_B NEDD8-conjugating enzym 100.0 4.8E-46 1.6E-50 286.5 16.2 152 21-173 6-166 (167)
20 1i7k_A Ubiquitin-conjugating e 100.0 2.3E-46 7.9E-51 290.9 14.4 147 26-175 27-176 (179)
21 1fxt_A Ubiquitin-conjugating e 100.0 1E-46 3.5E-51 285.3 12.1 143 30-173 2-148 (149)
22 2gjd_A Ubiquitin-conjugating e 100.0 5.7E-46 2E-50 283.5 15.6 147 26-173 1-156 (157)
23 1jat_A Ubiquitin-conjugating e 100.0 1.7E-46 5.8E-51 285.8 11.3 145 29-175 5-152 (155)
24 2grr_A Ubiquitin-conjugating e 100.0 1.3E-45 4.3E-50 282.6 15.7 149 25-174 3-160 (161)
25 2pwq_A Ubiquitin conjugating e 100.0 1.1E-45 3.9E-50 294.4 15.1 151 25-177 19-173 (216)
26 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1E-45 3.5E-50 290.3 14.5 148 25-174 28-192 (193)
27 3bzh_A Ubiquitin-conjugating e 100.0 3E-45 1E-49 287.9 16.6 144 28-173 47-193 (194)
28 1yrv_A Ubiquitin-conjugating l 100.0 1.5E-45 5.2E-50 284.0 14.2 147 22-171 16-168 (169)
29 3rz3_A Ubiquitin-conjugating e 100.0 2.8E-45 9.7E-50 286.0 15.9 147 25-172 3-171 (183)
30 3k9o_A Ubiquitin-conjugating e 100.0 1.5E-45 5.1E-50 291.5 14.0 149 26-176 2-157 (201)
31 1tte_A Ubiquitin-conjugating e 100.0 1.4E-45 4.6E-50 293.8 12.5 148 29-177 2-153 (215)
32 2awf_A Ubiquitin-conjugating e 100.0 1.9E-45 6.5E-50 284.3 12.7 143 25-168 13-172 (172)
33 1wzv_A Ubiquitin-conjugating e 100.0 4.9E-45 1.7E-49 277.7 14.1 146 29-175 4-152 (155)
34 3e46_A Ubiquitin-conjugating e 100.0 8.1E-45 2.8E-49 295.4 15.4 153 24-178 52-211 (253)
35 2y9m_A Ubiquitin-conjugating e 100.0 1.3E-44 4.4E-49 279.7 14.3 150 25-174 2-168 (172)
36 2onu_A Ubiquitin-conjugating e 100.0 1.1E-45 3.9E-50 280.4 7.5 146 29-177 2-150 (152)
37 1c4z_D UBCH7, ubiquitin conjug 100.0 1.1E-44 3.8E-49 275.5 12.7 147 29-176 2-151 (154)
38 2z5d_A Ubiquitin-conjugating e 100.0 1.8E-44 6.1E-49 280.0 10.2 145 28-176 24-171 (179)
39 1yf9_A Ubiquitin carrier prote 100.0 3.6E-44 1.2E-48 276.8 10.1 143 29-175 12-157 (171)
40 4ddg_A Ubiquitin-conjugating e 100.0 7.1E-43 2.4E-47 301.1 14.1 152 28-181 2-156 (399)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.1E-41 3.7E-46 262.2 9.9 141 24-166 3-163 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 2.6E-40 8.9E-45 251.7 8.8 135 22-157 14-156 (156)
43 3ceg_A Baculoviral IAP repeat- 100.0 7.7E-39 2.6E-43 267.3 12.4 152 24-175 71-244 (323)
44 2a4d_A Ubiquitin-conjugating e 100.0 2.1E-38 7E-43 241.9 11.5 127 24-151 20-156 (160)
45 2fo3_A Ubiquitin-conjugating e 100.0 3E-38 1E-42 232.3 11.7 115 28-144 5-123 (125)
46 1jat_B Ubiquitin-conjugating e 100.0 1.9E-39 6.6E-44 242.5 5.0 126 28-154 5-138 (138)
47 2h2y_A Ubiquitin-conjugating e 100.0 1.1E-37 3.9E-42 232.3 13.6 115 26-142 17-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 8.4E-38 2.9E-42 240.9 8.3 124 27-151 33-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 4.7E-37 1.6E-41 228.9 11.2 115 23-138 17-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.2E-36 4.1E-41 237.8 7.8 120 21-144 6-131 (187)
51 1zuo_A Hypothetical protein LO 100.0 3.3E-36 1.1E-40 235.1 1.9 138 22-169 20-177 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 8.7E-26 3E-30 170.7 2.8 117 25-155 28-160 (172)
53 3r3q_A Suppressor protein STP2 99.8 6.6E-19 2.3E-23 133.9 8.8 89 55-144 57-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.6E-18 5.6E-23 128.3 0.3 92 23-123 28-131 (168)
55 3obq_A Tumor susceptibility ge 99.5 4.5E-14 1.6E-18 105.5 7.2 80 55-139 50-138 (146)
56 2ebm_A RWD domain-containing p 96.6 0.0064 2.2E-07 43.4 6.9 67 30-98 11-78 (128)
57 2yz0_A Serine/threonine-protei 95.5 0.13 4.4E-06 36.9 9.5 69 30-98 11-85 (138)
58 1ukx_A GCN2, GCN2 EIF2alpha ki 94.9 0.092 3.1E-06 37.6 7.2 70 28-97 9-85 (137)
59 2day_A Ring finger protein 25; 94.8 0.039 1.3E-06 39.1 4.9 66 33-98 12-82 (128)
60 1tt5_E Ubiquitin-conjugating e 94.8 0.018 6.2E-07 29.7 2.1 16 1-16 1-16 (26)
61 3zqs_A E3 ubiquitin-protein li 94.5 0.22 7.5E-06 38.1 8.5 83 32-138 4-87 (186)
62 2ebk_A RWD domain-containing p 93.3 0.2 6.7E-06 35.5 6.1 40 58-97 39-78 (128)
63 2daw_A RWD domain containing p 92.3 0.34 1.2E-05 35.6 6.3 23 76-98 76-98 (154)
64 2dax_A Protein C21ORF6; RWD do 89.9 0.45 1.5E-05 34.7 4.8 24 76-99 74-97 (152)
65 2cwb_A Chimera of immunoglobul 58.1 2.1 7.2E-05 29.7 0.0 29 141-169 22-50 (108)
66 2jrw_A Cyclic extended PEP.1; 34.7 16 0.00055 17.9 1.1 17 88-104 4-20 (26)
67 2fkn_A Urocanate hydratase; ro 25.2 1.1E+02 0.0037 26.9 5.3 25 147-171 277-301 (552)
68 1x87_A Urocanase protein; stru 24.8 1.1E+02 0.0038 26.8 5.3 25 147-171 276-300 (551)
69 1uwk_A Urocanate hydratase; hy 24.5 1.1E+02 0.0039 26.7 5.3 24 148-171 282-305 (557)
No 1
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.1e-52 Score=326.92 Aligned_cols=180 Identities=44% Similarity=0.817 Sum_probs=169.2
Q ss_pred CcchhhhHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHhcCCCCCccEee---cCCCCCcc---eEEEEEeCCCCCCCC
Q 030111 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITF---PNGKDDLM---NFEVSIRPDEGYYVG 74 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~~~~---~~~~~n~~---~w~~~igp~~tpyeg 74 (183)
||+++.+|++++++++..+ ++....+.+.+||++||++++.++++.+.+ +. .+|++ +|+++|+|++|||+|
T Consensus 3 m~~l~~~~~~~~~~~~~~~--~~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~-~~nl~~~~~w~~~I~p~~tpyeg 79 (190)
T 3o2u_A 3 MLKLRQLQKKKQKENENSS--SIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNY 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SSSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTT-CCCTTSCCEEEEEECCSSSTTTT
T ss_pred hHHHHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHhccCCCCEEEEecCCCC-CccCCcCCeEEEEEcCCCCCCCC
Confidence 7999999999998877543 667778899999999999998777888764 65 78999 999999888899999
Q ss_pred cEEEEEEEeCCCCCCCCCcceeeccceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHH
Q 030111 75 GTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVL 154 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~ 154 (183)
|.|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|
T Consensus 80 g~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~ 159 (190)
T 3o2u_A 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL 159 (190)
T ss_dssp CCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHHHHhcCCCCccccccCC
Q 030111 155 RDNPKLFESNVRRAMAGGYVGQTFFIRCI 183 (183)
Q Consensus 155 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 183 (183)
.+|+++|+++||+|++++++.++.|++|+
T Consensus 160 ~~d~~~f~~~ar~~~~~~~~~~~~~~~~~ 188 (190)
T 3o2u_A 160 CEGEKEFAEAVRLTMSGGSIEHVKYDNIV 188 (190)
T ss_dssp HTCHHHHHHHHHHHHBTCEETTEECCBCC
T ss_pred HHCHHHHHHHHHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999986
No 2
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-52 Score=323.37 Aligned_cols=177 Identities=63% Similarity=1.132 Sum_probs=163.1
Q ss_pred CcchhhhHHHHHHHHhhhcCCCCCCCCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEE
Q 030111 1 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~ 80 (183)
||++++++++++++++ ++..+.+.+.+||++||+++++++++.+.++. .+|+++|+++|||++|||+||+|+++
T Consensus 3 m~~~~~~~~~~~~~~~-----~~~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~-~~nl~~W~~~igP~~tpYegg~f~~~ 76 (180)
T 2nvu_C 3 MIKLFSLKQQKKEEEK-----GSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFS 76 (180)
T ss_dssp --CCCCCCCSCCCCCC-----SCCCSCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCCSGGGTTBCEEEE
T ss_pred hHHHHHHHHHHHhhhh-----cccCCccHHHHHHHHHHHhcCCCCCeEEEecc-cccccceEEEECCCCCCCCCCEEEEE
Confidence 8999999777744332 23667889999999999999888888886565 78999999999999999999999999
Q ss_pred EEeCCCCCCCCCcceeeccceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHH
Q 030111 81 FQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKL 160 (183)
Q Consensus 81 i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~ 160 (183)
|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++
T Consensus 77 i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~ 156 (180)
T 2nvu_C 77 FKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRL 156 (180)
T ss_dssp EECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHH
T ss_pred EeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccccCC
Q 030111 161 FESNVRRAMAGGYVGQTFFIRCI 183 (183)
Q Consensus 161 f~~~~~~~~~~~~~~~~~~~~~~ 183 (183)
|+++||+|++++++++.+|++|+
T Consensus 157 f~~~v~~~v~~~~~~~~~~~~~~ 179 (180)
T 2nvu_C 157 FEQNVQRSMRGGYIGSTYFERCL 179 (180)
T ss_dssp HHHHHHHHHHSEEETTEEECCCB
T ss_pred HHHHHHHHHhhCCcCccccchhc
Confidence 99999999999999999999985
No 3
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-49 Score=302.58 Aligned_cols=157 Identities=66% Similarity=1.200 Sum_probs=150.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccc
Q 030111 26 KQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 105 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 105 (183)
+.+.+.+||++|++++++++++.+.++. .+|+++|+++|||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 3 MASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp SCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEecc-CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 3578999999999999888888886566 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCccccccCC
Q 030111 106 DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 183 (183)
Q Consensus 106 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 183 (183)
+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|++++++.+..|++++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~~~~~~~~~~ 159 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 159 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCB
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCccCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-48 Score=294.57 Aligned_cols=150 Identities=27% Similarity=0.496 Sum_probs=140.5
Q ss_pred CCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 22 TPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+...++..+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 83 (158)
T 1zdn_A 6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83 (158)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEecc
Confidence 45678889999999999999 667787775 55 78999999999 999999999999999999999999999999999
Q ss_pred cceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 99 KVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 99 ~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
++|||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+.+++
T Consensus 84 ~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 84 KIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp CCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.8e-47 Score=290.00 Aligned_cols=146 Identities=36% Similarity=0.692 Sum_probs=138.6
Q ss_pred CcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceec
Q 030111 27 QSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 103 (183)
++.+.+||++||+++ +.+.++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 79 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAG-PV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHP 79 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccc
Confidence 567899999999999 667777775 55 68999999999 99999999999999999999999999999999999999
Q ss_pred cccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 104 NIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 104 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++.
T Consensus 80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 80 NINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred eECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764
No 6
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.9e-47 Score=289.22 Aligned_cols=148 Identities=30% Similarity=0.635 Sum_probs=138.8
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|++.+.+||++|++++ +.++++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGA-PQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence 4567899999999999 566777764 55 78999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
|||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++..
T Consensus 79 Pnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988754
No 7
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-47 Score=291.83 Aligned_cols=147 Identities=29% Similarity=0.535 Sum_probs=136.2
Q ss_pred CcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceec
Q 030111 27 QSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 103 (183)
+..+.+||++||+++ +.++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 3 s~~~~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (154)
T 2c2v_B 3 SAGLPRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP 80 (154)
T ss_dssp SCSCCHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccC
Confidence 345679999999999 667787775 55 67999999999 99999999999999999999999999999999999999
Q ss_pred cccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 104 NIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 104 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 81 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 81 NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998754
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.9e-47 Score=292.97 Aligned_cols=147 Identities=29% Similarity=0.613 Sum_probs=138.1
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|++.+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 78 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH 78 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-ec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence 4567899999999999 567777775 55 78999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
|||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|+++||+|+++++.
T Consensus 79 PNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 79 PNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988763
No 9
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.5e-47 Score=290.95 Aligned_cols=146 Identities=31% Similarity=0.676 Sum_probs=137.2
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..+.+.+||++||+++ +.++++.+. +. .+|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 95 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAG-PV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence 3556899999999999 667777775 55 67999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++
T Consensus 96 PNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 96 PNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764
No 10
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=5.8e-47 Score=291.13 Aligned_cols=147 Identities=27% Similarity=0.555 Sum_probs=136.9
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|++.+.+||++||+++ +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 4568899999999999 567787775 55357999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEecccc-------------CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 030111 103 PNIDLEGNVCLNIL-------------REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAM 169 (183)
Q Consensus 103 PnV~~~G~icl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 169 (183)
|||+.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~ 159 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999 57899999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 030111 170 AGGY 173 (183)
Q Consensus 170 ~~~~ 173 (183)
+++.
T Consensus 160 ~~~~ 163 (165)
T 2ucz_A 160 LKSL 163 (165)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8754
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.5e-46 Score=288.79 Aligned_cols=146 Identities=32% Similarity=0.694 Sum_probs=138.1
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..+.+.+||++||+++ +.++++.+. +. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H 93 (165)
T 2c4o_A 16 RGSMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 93 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence 4567899999999999 556777775 55 68999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|.+|+++|+++||+|+++++
T Consensus 94 PnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a 164 (165)
T 2c4o_A 94 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164 (165)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=9.4e-47 Score=285.82 Aligned_cols=145 Identities=32% Similarity=0.676 Sum_probs=137.1
Q ss_pred CcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceec
Q 030111 27 QSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 103 (183)
+..+.+||++|++++ +.++++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP 79 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccC
Confidence 456889999999999 667777775 55 57999999999 99999999999999999999999999999999999999
Q ss_pred cccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 104 NIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 104 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++
T Consensus 80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 149 (150)
T 1z2u_A 80 NINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149 (150)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
No 13
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.8e-46 Score=288.12 Aligned_cols=144 Identities=26% Similarity=0.527 Sum_probs=135.7
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
+++.+||++||+++ +.++++.+. +...+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAG-PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 57899999999999 667788775 55456999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccccC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 105 IDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 105 V~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
|+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999997 789999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 030111 172 G 172 (183)
Q Consensus 172 ~ 172 (183)
.
T Consensus 161 s 161 (164)
T 3h8k_A 161 S 161 (164)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-46 Score=287.15 Aligned_cols=148 Identities=27% Similarity=0.535 Sum_probs=137.6
Q ss_pred CCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 23 PVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 23 ~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
...+++.+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 3 ~~~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 3 TSKERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccccchHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3445677899999999999 456777764 55 67999999999 9999999999999999999999999999999999
Q ss_pred ceeccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 100 VYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 100 i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
+|||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++| +|+++|+++||+|++++.
T Consensus 81 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~ 153 (156)
T 2e2c_A 81 CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQ 153 (156)
T ss_dssp CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred cccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999998753
No 15
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.6e-46 Score=287.73 Aligned_cols=148 Identities=28% Similarity=0.530 Sum_probs=139.3
Q ss_pred CcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceec
Q 030111 27 QSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 103 (183)
+.++.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHP 79 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccc
Confidence 457899999999999 667777775 55 78999999999 99999999999999999999999999999999999999
Q ss_pred cccCCCcEeccccC----CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 104 NIDLEGNVCLNILR----EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 104 nV~~~G~icl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
||+.+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+.+++...
T Consensus 80 Nv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 156 (169)
T 1yh2_A 80 NIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156 (169)
T ss_dssp TBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred cCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 99999999999998 89999999999999999999999999999999999999999999999999999988643
No 16
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-46 Score=286.00 Aligned_cols=149 Identities=30% Similarity=0.555 Sum_probs=136.3
Q ss_pred CCCCcHHHHHHHHHHHhc--CCCCCccEeecCCC-C---CcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCccee
Q 030111 24 VKKQSAGELRLHRDISEL--NLPKTCSITFPNGK-D---DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKC 96 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~-~---n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 96 (183)
...+.++.+||++||+++ ++++|+.+. +... + |+++|+++| ||++|||+||+|+++|.||++||++||+|+|
T Consensus 5 ~~~~~~~~~RL~kEl~~l~~~~p~gi~~~-p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F 83 (163)
T 3rcz_B 5 HHHSSLCKTRLQEERKQWRRDHPFGFYAK-PCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRF 83 (163)
T ss_dssp ----CHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCCCEEEE-EccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEE
Confidence 346889999999999999 677888875 4412 2 899999999 9999999999999999999999999999999
Q ss_pred eccceeccccCCCcEeccccCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 97 KTKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 97 ~t~i~HPnV~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
.|+||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++|+
T Consensus 84 ~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 84 TPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp SSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred eCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999975 4999999999999999999999999999999999999999999999999999875
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2e-46 Score=283.76 Aligned_cols=143 Identities=31% Similarity=0.576 Sum_probs=135.6
Q ss_pred HHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccC
Q 030111 31 ELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 31 ~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 107 (183)
.+||++||+++ +.++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 80 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAV-PV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 80 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC
Confidence 58999999999 667777775 54 67999999999 999999999999999999999999999999999999999999
Q ss_pred CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 108 EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 108 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|+++||+|+++++..
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988753
No 18
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=3.2e-46 Score=285.38 Aligned_cols=148 Identities=24% Similarity=0.496 Sum_probs=138.3
Q ss_pred CCCcHHHHHHHHHHHhcC-----CCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 25 KKQSAGELRLHRDISELN-----LPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l~-----~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.|++.+.+||++||++++ .+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 81 (159)
T 2bep_A 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 81 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC
Confidence 466789999999999993 25677775 54 67899999999 999999999999999999999999999999999
Q ss_pred cceeccccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 99 KVYHPNIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 99 ~i~HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
+||||||+. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 82 ~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 82 KIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp CCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 999999995 9999999999999999999999999999999999999999999999999999999999999998764
No 19
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.8e-46 Score=286.54 Aligned_cols=152 Identities=39% Similarity=0.750 Sum_probs=140.1
Q ss_pred CCCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 21 KTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 21 ~~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+++....+.+.+||++||+++ +.+.++.+..+ ..+|++.|+++|||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 84 (167)
T 3fn1_B 6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFP-DPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT 84 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECS-SSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeC-CCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence 455667899999999999999 46677777644 378999999999999999999999999999999999999999999
Q ss_pred cceeccccCCCcEeccccCC------ccCCCCCHHHHHHHHHHhhcC-CCCCCcccHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 99 KVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 99 ~i~HPnV~~~G~icl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
+||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.|||++|++|+++|+++||+|+++
T Consensus 85 ~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 164 (167)
T 3fn1_B 85 KIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164 (167)
T ss_dssp CCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999975 799999999999999999999 69999999999999999999999999999998
Q ss_pred CC
Q 030111 172 GY 173 (183)
Q Consensus 172 ~~ 173 (183)
++
T Consensus 165 ~A 166 (167)
T 3fn1_B 165 YA 166 (167)
T ss_dssp HC
T ss_pred hc
Confidence 75
No 20
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-46 Score=290.87 Aligned_cols=147 Identities=29% Similarity=0.528 Sum_probs=135.9
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
++..+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 104 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH 104 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence 6788999999999999 556777764 55 67999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 103 PNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 103 PnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
|||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++|++++++..-+
T Consensus 105 PNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~ 176 (179)
T 1i7k_A 105 PNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176 (179)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC-
T ss_pred CccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999987654
No 21
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1e-46 Score=285.34 Aligned_cols=143 Identities=27% Similarity=0.498 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 30 GELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
+.+||++|++++ +.++++.+. +.+.+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~-~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEE-ESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 469999999999 667788876 55345999999999 99999999999999999999999999999999999999999
Q ss_pred C-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 107 L-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 107 ~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+++
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 8 999999999999999999999999999999999999999999999999999999999999998865
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=5.7e-46 Score=283.46 Aligned_cols=147 Identities=27% Similarity=0.478 Sum_probs=135.9
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCC----CCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNG----KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~----~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
|++.+.+||++||+++ +.++|+.+. |.. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAK-PVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 3567899999999999 667788775 431 25899999999 999999999999999999999999999999999
Q ss_pred cceeccccCCCcEeccccCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 99 KVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 99 ~i~HPnV~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
++|||||+.+|.||+++|.. +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 156 (157)
T 2gjd_A 80 GFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156 (157)
T ss_dssp TCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred CCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999999986 7999999999999999999999999999999999999999999999999999875
No 23
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.7e-46 Score=285.84 Aligned_cols=145 Identities=31% Similarity=0.546 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccc
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 105 (183)
.+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 4579999999999 667787775 55 67999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 106 DLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 106 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988754
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.3e-45 Score=282.64 Aligned_cols=149 Identities=30% Similarity=0.522 Sum_probs=138.0
Q ss_pred CCCcHHHHHHHHHHHhc--CCCCCccEeecC----CCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 25 KKQSAGELRLHRDISEL--NLPKTCSITFPN----GKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.|++.+.+||++|++++ +.++++.+. +. +.+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 3 HMSGIALSRLAQERKAWRKDHPFGFVAV-PTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 36778999999999999 567777764 32 236899999999 99999999999999999999999999999999
Q ss_pred ccceeccccCCCcEeccccCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 030111 98 TKVYHPNIDLEGNVCLNILRE--DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV 174 (183)
Q Consensus 98 t~i~HPnV~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~ 174 (183)
|++|||||+.+|.||+++|.. +|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|+++||+|+++++.
T Consensus 82 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 82 PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred cCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999975 79999999999999999999999999999999999999999999999999999874
No 25
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.1e-45 Score=294.43 Aligned_cols=151 Identities=26% Similarity=0.527 Sum_probs=140.8
Q ss_pred CCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccce
Q 030111 25 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVY 101 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 101 (183)
.+.+.+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~ 96 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAH-IK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW 96 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCc
Confidence 35678999999999999 566777775 55 67999999999 999999999999999999999999999999999999
Q ss_pred eccccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCcc
Q 030111 102 HPNIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQT 177 (183)
Q Consensus 102 HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~~ 177 (183)
||||+. +|.||+++|.+.|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+.+++....
T Consensus 97 HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~ 173 (216)
T 2pwq_A 97 HPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPK 173 (216)
T ss_dssp BTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred CCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCc
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999887654
No 26
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1e-45 Score=290.27 Aligned_cols=148 Identities=27% Similarity=0.492 Sum_probs=133.2
Q ss_pred CCCcHHHHHHHHHHHhc--CCC-------------CCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCC
Q 030111 25 KKQSAGELRLHRDISEL--NLP-------------KTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYP 88 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l--~~~-------------~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP 88 (183)
.....+.+||++||+++ +.+ .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||
T Consensus 28 ~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 105 (193)
T 2f4z_A 28 RGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP 105 (193)
T ss_dssp ----CHHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-Ec-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCC
Confidence 34556889999999999 333 566664 44 57899999999 99999999999999999999999
Q ss_pred CCCCcceeeccceeccccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHH
Q 030111 89 HEAPKVKCKTKVYHPNIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRR 167 (183)
Q Consensus 89 ~~pP~v~f~t~i~HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~ 167 (183)
++||+|+|.|+||||||+. +|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+
T Consensus 106 ~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~ 185 (193)
T 2f4z_A 106 YNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKL 185 (193)
T ss_dssp TSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHH
Confidence 9999999999999999995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 030111 168 AMAGGYV 174 (183)
Q Consensus 168 ~~~~~~~ 174 (183)
|+++++.
T Consensus 186 ~t~~ya~ 192 (193)
T 2f4z_A 186 WTETFAK 192 (193)
T ss_dssp HHHHHCC
T ss_pred HHHHHcc
Confidence 9998764
No 27
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3e-45 Score=287.90 Aligned_cols=144 Identities=29% Similarity=0.615 Sum_probs=137.0
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
+.+.+||++||++| +.++++.+. +. .+|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 124 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCN 124 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCceee-cc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccce
Confidence 56899999999999 567777775 55 78999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCC
Q 030111 105 IDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGY 173 (183)
Q Consensus 105 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~ 173 (183)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|.+|+++|+++||+|+.+++
T Consensus 125 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya 193 (194)
T 3bzh_A 125 INSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193 (194)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998875
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-45 Score=284.02 Aligned_cols=147 Identities=29% Similarity=0.496 Sum_probs=136.5
Q ss_pred CCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 22 TPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
....|++.+.+||++||++| +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 16 ~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 93 (169)
T 1yrv_A 16 PRGSMHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 93 (169)
T ss_dssp CTTGGGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred ccCccChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC
Confidence 34567889999999999999 566777764 55 78999999999 999999999999999999999999999999999
Q ss_pred cceeccc-cCCCcEeccccC--CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 99 KVYHPNI-DLEGNVCLNILR--EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 99 ~i~HPnV-~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
+|||||| +.+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++ |+||++
T Consensus 94 ~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 94 IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp CCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 9999999 779999999998 89999999999999999999999999999999999999999999999 998864
No 29
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.8e-45 Score=285.96 Aligned_cols=147 Identities=30% Similarity=0.576 Sum_probs=135.5
Q ss_pred CCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccce
Q 030111 25 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVY 101 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 101 (183)
++++++.+||++||+++ +.+.++.+..+. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~-~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVD-EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECT-TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecC-ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 44578999999999999 667788776444 78999999999 999999999999999999999999999999999999
Q ss_pred eccccCCCcEeccccC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhh------CHHHHH
Q 030111 102 HPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRD------NPKLFE 162 (183)
Q Consensus 102 HPnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~------~~~~f~ 162 (183)
||||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.|||.+|++ |+++|+
T Consensus 82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 9999999999999996 789999999999999999999999999999999999999 789999
Q ss_pred HHHHHHHhcC
Q 030111 163 SNVRRAMAGG 172 (183)
Q Consensus 163 ~~~~~~~~~~ 172 (183)
++||+++.++
T Consensus 162 ~~v~~~v~~s 171 (183)
T 3rz3_A 162 DIIRKQVLGT 171 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 30
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.5e-45 Score=291.49 Aligned_cols=149 Identities=23% Similarity=0.494 Sum_probs=137.3
Q ss_pred CCcHHHHHHHHHHHhcCC-----CCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 26 KQSAGELRLHRDISELNL-----PKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
|++.+.+||++||+++.. +.++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 566789999999999932 4577765 55 67999999999 9999999999999999999999999999999999
Q ss_pred ceeccccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 100 VYHPNIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 100 i~HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+|+...
T Consensus 80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~ 157 (201)
T 3k9o_A 80 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 157 (201)
T ss_dssp CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_pred cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccc
Confidence 99999996 999999999999999999999999999999999999999999999999999999999999998877553
No 31
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.4e-45 Score=293.82 Aligned_cols=148 Identities=26% Similarity=0.487 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccc
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 105 (183)
++.+||++||+++ ++++++.+. +...+++++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~-p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEEC-CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 4679999999999 567777775 55355677999999 9999999999999999999999999999999999999999
Q ss_pred cC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCcc
Q 030111 106 DL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQT 177 (183)
Q Consensus 106 ~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~~ 177 (183)
+. +|.||+++|.+.|+|++|+.+||.+|+++|.+|++++|+|.+||.+|.+|+++|.++||+|+.+++....
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~ 153 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETS 153 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCS
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCC
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999986653
No 32
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.9e-45 Score=284.32 Aligned_cols=143 Identities=34% Similarity=0.611 Sum_probs=106.7
Q ss_pred CCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccce
Q 030111 25 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVY 101 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 101 (183)
..++.+.+||++||++| +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~-p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~ 91 (172)
T 2awf_A 13 GLVPRGSLLLRRQLAELNKNPVEGFSAG-LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 91 (172)
T ss_dssp CCCCTTHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence 35778899999999999 667787775 54357999999999 999999999999999999999999999999999999
Q ss_pred eccccCCCcEeccccC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHH-HHHHHHHH
Q 030111 102 HPNIDLEGNVCLNILR-------------EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPK-LFESNVRR 167 (183)
Q Consensus 102 HPnV~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~-~f~~~~~~ 167 (183)
||||+.+|.||+++|. +.|+|+++|.+||.+|++||.+|++++|+|.+||++|++|++ +|+++||+
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~ 171 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence 9999999999999996 689999999999999999999999999999999999999999 99999998
Q ss_pred H
Q 030111 168 A 168 (183)
Q Consensus 168 ~ 168 (183)
|
T Consensus 172 ~ 172 (172)
T 2awf_A 172 C 172 (172)
T ss_dssp -
T ss_pred C
Confidence 6
No 33
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=4.9e-45 Score=277.74 Aligned_cols=146 Identities=28% Similarity=0.549 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
.+.+||++||+++ +.++++.+..+. .+|+++|+++|.|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~-~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSD-DANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEEC-SSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecC-CCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 4689999999999 566777774355 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEecccc-CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 107 LEGNVCLNIL-REDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 107 ~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
.+|.||+++| .++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++..
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999 89999999999999999999999999999999999999999999999999999988754
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=8.1e-45 Score=295.41 Aligned_cols=153 Identities=23% Similarity=0.476 Sum_probs=141.2
Q ss_pred CCCCcHHHHHHHHHHHhcC-----CCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 24 VKKQSAGELRLHRDISELN-----LPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l~-----~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
..|++.+.+||++||++|. .+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~ 129 (253)
T 3e46_A 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI 129 (253)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence 4467889999999999992 25677775 55 67999999999 99999999999999999999999999999999
Q ss_pred ccceeccccC-CCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 98 TKVYHPNIDL-EGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 98 t~i~HPnV~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+|+...
T Consensus 130 T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~ 209 (253)
T 3e46_A 130 TKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 209 (253)
T ss_dssp SCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCS
T ss_pred CCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccc
Confidence 9999999995 999999999999999999999999999999999999999999999999999999999999998887654
Q ss_pred cc
Q 030111 177 TF 178 (183)
Q Consensus 177 ~~ 178 (183)
..
T Consensus 210 ~~ 211 (253)
T 3e46_A 210 VS 211 (253)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.3e-44 Score=279.73 Aligned_cols=150 Identities=22% Similarity=0.430 Sum_probs=134.9
Q ss_pred CCCcHHHHHHHHHHHhcCC----C-----CC---ccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCC
Q 030111 25 KKQSAGELRLHRDISELNL----P-----KT---CSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEA 91 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l~~----~-----~~---~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~p 91 (183)
.|++.+.+||++||++++. + +. +....+...+|+++|+++| ||++|||+||+|+++|.||++||++|
T Consensus 2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P 81 (172)
T 2y9m_A 2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP 81 (172)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence 3677899999999999943 2 33 2223463478999999999 99999999999999999999999999
Q ss_pred Ccceeec-cceecccc-CCCcEeccccC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhh-CHHHHHHHHHH
Q 030111 92 PKVKCKT-KVYHPNID-LEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRD-NPKLFESNVRR 167 (183)
Q Consensus 92 P~v~f~t-~i~HPnV~-~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~-~~~~f~~~~~~ 167 (183)
|+|+|.| +||||||+ .+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++ |+++|+++||+
T Consensus 82 P~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~ 161 (172)
T 2y9m_A 82 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161 (172)
T ss_dssp CEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHH
T ss_pred CEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999 99999996 69999999998 899999999999999999999999999999999999999 99999999999
Q ss_pred HHhcCCC
Q 030111 168 AMAGGYV 174 (183)
Q Consensus 168 ~~~~~~~ 174 (183)
|+++++.
T Consensus 162 ~~~~~~~ 168 (172)
T 2y9m_A 162 FLAERER 168 (172)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998763
No 36
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-45 Score=280.38 Aligned_cols=146 Identities=26% Similarity=0.502 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccC
Q 030111 29 AGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 107 (183)
++.+||++|++++.. .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 sa~~Rl~kEl~~l~~-~~~~v~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIM-AGYDLE-LN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHH-HTCCEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCc-CCCEEE-Ec-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 356899999999943 467765 44 68999999999 999999999999999999999999999999999999999995
Q ss_pred -CCcEeccccCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCcc
Q 030111 108 -EGNVCLNILREDWKPVLNINTIIYG-LFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQT 177 (183)
Q Consensus 108 -~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~~ 177 (183)
+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+.+++..+.
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~ 150 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL 150 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999 689999999999999999999999999999999999999887654
No 37
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.1e-44 Score=275.54 Aligned_cols=147 Identities=30% Similarity=0.504 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 29 AGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
.+.+||++|++++ +.++++.+. +..++|+++|+++|+|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEe-eCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 3568999999999 345566543 4447899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccccC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 107 LEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 107 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
.+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+++...
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 99999999996 78999999999999999999999999999999999999999999999999999988654
No 38
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=280.04 Aligned_cols=145 Identities=28% Similarity=0.540 Sum_probs=135.6
Q ss_pred cHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecccc
Q 030111 28 SAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNID 106 (183)
Q Consensus 28 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 106 (183)
+.+.+||++||+++. ++++.+. +. +|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 24 ~~a~~RL~kEl~~l~-~~g~~v~-~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 24 SPGKRRMDTDVIKLI-ESKHEVT-IL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp CHHHHHHHHHHHHHH-HSSSCEE-EE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHhcC-cCCCEEE-EC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 368999999999995 3577775 33 5789999999 99999999999999999999999999999999999999999
Q ss_pred C-CCcEeccccCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCc
Q 030111 107 L-EGNVCLNILREDWKPVLNINTIIYG-LFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQ 176 (183)
Q Consensus 107 ~-~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~ 176 (183)
. +|.||+++|.++|+|++++.+||.+ |+++|.+|++++|+|.+||++|++|+++|+++||+|+++++..+
T Consensus 100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~~ 171 (179)
T 2z5d_A 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 171 (179)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccc
Confidence 9 9999999999999999999999999 99999999999999999999999999999999999999988643
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.6e-44 Score=276.84 Aligned_cols=143 Identities=26% Similarity=0.479 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccC
Q 030111 29 AGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 107 (183)
++.+||++||++++..+ +.+ +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~-~~v--~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNST-RKV--YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSS-SCE--EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCC-CCC--CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 56799999999994333 334 33 67999999999 999999999999999999999999999999999999999995
Q ss_pred -CCcEeccccCCccCCCCCHHHHHHHH-HHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q 030111 108 -EGNVCLNILREDWKPVLNINTIIYGL-FHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVG 175 (183)
Q Consensus 108 -~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~ 175 (183)
+|.||+++|.++|+|++++.+||.+| ++||.+|++++|+|.+||++|.+|+++|.++||+|+++++..
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~ 157 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATP 157 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCH
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcCh
Confidence 99999999999999999999999997 799999999999999999999999999999999999988753
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=7.1e-43 Score=301.14 Aligned_cols=152 Identities=30% Similarity=0.653 Sum_probs=143.1
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceecc
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 104 (183)
+.+.+||++|++++ ++++++.+. |. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccc
Confidence 46899999999999 667787775 65 68999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHhcCCCCcccccc
Q 030111 105 IDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIR 181 (183)
Q Consensus 105 V~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (183)
|+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++.....+++
T Consensus 80 v~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De 156 (399)
T 4ddg_A 80 INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDE 156 (399)
T ss_dssp BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred cCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987765543
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.1e-41 Score=262.23 Aligned_cols=141 Identities=28% Similarity=0.487 Sum_probs=125.8
Q ss_pred CCCCcHHHHHHHHHHHhcC--C------------CCCccEeecCCCCCcceEEEEE-eCCCCCCC--CcEEEEEEEeCCC
Q 030111 24 VKKQSAGELRLHRDISELN--L------------PKTCSITFPNGKDDLMNFEVSI-RPDEGYYV--GGTFVFTFQVSPI 86 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l~--~------------~~~~~~~~~~~~~n~~~w~~~i-gp~~tpye--gg~f~~~i~fp~~ 86 (183)
.+|++.+.+||++||+++. . +.++.+. +. .+|+++|+++| ||++|||+ ||.|+++|.||++
T Consensus 3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~ 80 (167)
T 4ds2_A 3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDD 80 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTT
T ss_pred ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCC
Confidence 4577788999999999992 2 3344443 44 78999999999 99999999 9999999999999
Q ss_pred CCCCCCcceeeccceeccccCCCcEeccccCCccCCCCCHHHHHH-HHHHhhcC--CCCCCcccHHHHHHHhhCHHHHHH
Q 030111 87 YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIY-GLFHLFTQ--PNYEDPLNHEAAAVLRDNPKLFES 163 (183)
Q Consensus 87 YP~~pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~~~n~~aa~~~~~~~~~f~~ 163 (183)
||++||+|+|.|++|||||+.+|.||+++|.++|+|++++.++|. .|++|+.+ |++++|+|.|||++|++|+++|++
T Consensus 81 YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~ 160 (167)
T 4ds2_A 81 YPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAA 160 (167)
T ss_dssp TTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHH
T ss_pred CCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHH
Confidence 999999999999999999999999999999999999999999754 67778775 899999999999999999999999
Q ss_pred HHH
Q 030111 164 NVR 166 (183)
Q Consensus 164 ~~~ 166 (183)
+||
T Consensus 161 ~vr 163 (167)
T 4ds2_A 161 RVR 163 (167)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.6e-40 Score=251.69 Aligned_cols=135 Identities=20% Similarity=0.292 Sum_probs=118.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcC---CCCCccEeecCC-CCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCccee
Q 030111 22 TPVKKQSAGELRLHRDISELN---LPKTCSITFPNG-KDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKC 96 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~El~~l~---~~~~~~~~~~~~-~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 96 (183)
+.......+.+||++||++++ .++++.+..... ..|+++|+++| ||++||||||+|+++|.||++||++||+|+|
T Consensus 14 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F 93 (156)
T 2q0v_A 14 LYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKF 93 (156)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred cCCcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEE
Confidence 344567788999999999993 456777754331 23699999999 9999999999999999999999999999999
Q ss_pred eccceeccccCCCcE---eccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhC
Q 030111 97 KTKVYHPNIDLEGNV---CLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDN 157 (183)
Q Consensus 97 ~t~i~HPnV~~~G~i---cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~ 157 (183)
.|+||||||+.+|.| |+++|. +|+|++++++||.+|+++|.+|++++++|.+||.+|.+|
T Consensus 94 ~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 94 DTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp SBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred EcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999999999 888886 599999999999999999999999999999999999765
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=267.25 Aligned_cols=152 Identities=24% Similarity=0.442 Sum_probs=135.0
Q ss_pred CCCCcHHHHHHHHHHHhc--CCCCCc--cEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 24 VKKQSAGELRLHRDISEL--NLPKTC--SITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l--~~~~~~--~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
..++..+.+||++|++.+ ++++++ ++.+....+|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 457789999999999999 445543 222222378999999999 999999999999999999999999999999999
Q ss_pred c-----ceeccccCCCcEeccccC-------CccCCCC-CHHHHHHHHHHhhc--CCCCCCcccHHH--HHHHhhCHHHH
Q 030111 99 K-----VYHPNIDLEGNVCLNILR-------EDWKPVL-NINTIIYGLFHLFT--QPNYEDPLNHEA--AAVLRDNPKLF 161 (183)
Q Consensus 99 ~-----i~HPnV~~~G~icl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~~~n~~a--a~~~~~~~~~f 161 (183)
+ +|||||+.+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|.+|+++|
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y 230 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHH
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHH
Confidence 8 999999999999999997 6899999 89999999999996 778899999987 67899999999
Q ss_pred HHHHHHHHhcCCCC
Q 030111 162 ESNVRRAMAGGYVG 175 (183)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (183)
+++||.|+.++++.
T Consensus 231 ~~~vr~~t~k~A~~ 244 (323)
T 3ceg_A 231 DGNIRQATVKWAML 244 (323)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhhH
Confidence 99999999987754
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.1e-38 Score=241.93 Aligned_cols=127 Identities=19% Similarity=0.333 Sum_probs=112.3
Q ss_pred CCCCcHHHHHHHHHHHhc--CCCCC-ccEeecCCCC--CcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 24 VKKQSAGELRLHRDISEL--NLPKT-CSITFPNGKD--DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 24 ~~~~~~~~~RL~~El~~l--~~~~~-~~~~~~~~~~--n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
......+.+||++||+++ +.+++ +.+.... ++ |+++|+++| ||++||||||+|+++|.||++||++||+|+|.
T Consensus 20 ~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 98 (160)
T 2a4d_A 20 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 98 (160)
T ss_dssp -CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESS-TTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CeeechHHHHHHHHHHHHHhCCCCCcEEEEecC-CccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe
Confidence 334578999999999999 34555 4554323 44 489999999 99999999999999999999999999999999
Q ss_pred ccceecccc-CCCcEeccccC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030111 98 TKVYHPNID-LEGNVCLNILR--EDWKPVLNINTIIYGLFHLFT-QPNYEDPLNHEAA 151 (183)
Q Consensus 98 t~i~HPnV~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~~~n~~aa 151 (183)
|+||||||+ .+|.||+++|. ++|+|++++++||.+|+++|. +||+++|+|.|||
T Consensus 99 T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 99 TKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred cCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 999999999 59999999997 899999999999999999995 6999999999987
No 45
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3e-38 Score=232.31 Aligned_cols=115 Identities=17% Similarity=0.462 Sum_probs=99.3
Q ss_pred cHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccc-eec
Q 030111 28 SAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV-YHP 103 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 103 (183)
+.+.+||++|++++ +.+.++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 82 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT 82 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-eC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence 45789999999999 566777775 44 78999999999 99999999999999999999999999999999996 999
Q ss_pred cccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCCCC
Q 030111 104 NIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYED 144 (183)
Q Consensus 104 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~ 144 (183)
||+.+|.||+++|.++|+|++++.+||.+|+++|.+|+...
T Consensus 83 nv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 83 HVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred cCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999999999999999998653
No 46
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.9e-39 Score=242.48 Aligned_cols=126 Identities=20% Similarity=0.413 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHhc--C-CCCCccEeecCCC-CCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecccee
Q 030111 28 SAGELRLHRDISEL--N-LPKTCSITFPNGK-DDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYH 102 (183)
Q Consensus 28 ~~~~~RL~~El~~l--~-~~~~~~~~~~~~~-~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..+.+||++|++++ + .+.++.+.....+ .|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 84 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence 46779999999999 3 4567777643312 2599999999 9999999999999999999999999999999999999
Q ss_pred ccccCC-CcE--eccccCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHH
Q 030111 103 PNIDLE-GNV--CLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVL 154 (183)
Q Consensus 103 PnV~~~-G~i--cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~ 154 (183)
|||+.+ |.| |++++. +|+|++++++||.+|+++|.+|++++++|.+||.+|
T Consensus 85 Pnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred CCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999995 999 999886 899999999999999999999999999999988654
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.1e-37 Score=232.30 Aligned_cols=115 Identities=19% Similarity=0.460 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccc-e
Q 030111 26 KQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV-Y 101 (183)
Q Consensus 26 ~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~ 101 (183)
..+.+.+||++|++++ +.+.++.+. +. .+|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus 17 ~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~ 94 (136)
T 2h2y_A 17 NLGNANYRIQKELNNFLKNPPINCTID-VH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK 94 (136)
T ss_dssp CTTSHHHHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEE-ec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence 4456889999999999 566777775 54 78999999999 99999999999999999999999999999999996 9
Q ss_pred eccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhcCCCC
Q 030111 102 HPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNY 142 (183)
Q Consensus 102 HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~ 142 (183)
||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|+.
T Consensus 95 HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 95 HTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=8.4e-38 Score=240.86 Aligned_cols=124 Identities=19% Similarity=0.348 Sum_probs=110.7
Q ss_pred CcHHHHHHHHHHHhc--CCCCC-ccEeecCCCC--CcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccc
Q 030111 27 QSAGELRLHRDISEL--NLPKT-CSITFPNGKD--DLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKV 100 (183)
Q Consensus 27 ~~~~~~RL~~El~~l--~~~~~-~~~~~~~~~~--n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
...+.+||++||+++ +.+++ +.+.... .+ |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 111 (170)
T 2hlw_A 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111 (170)
T ss_dssp CCCHHHHHHHHHHHHHHCCGGGCEEEEESS-TTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCcEEEEecC-cccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence 456899999999999 44455 4454323 44 499999999 99999999999999999999999999999999999
Q ss_pred eecccc-CCCcEeccccC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030111 101 YHPNID-LEGNVCLNILR--EDWKPVLNINTIIYGLFHLFT-QPNYEDPLNHEAA 151 (183)
Q Consensus 101 ~HPnV~-~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~~~n~~aa 151 (183)
|||||+ .+|.||+++|. ++|+|++++++||.+|+++|. +|++++|+|.|||
T Consensus 112 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 112 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred ccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 999999 69999999997 899999999999999999997 5999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-37 Score=228.85 Aligned_cols=115 Identities=23% Similarity=0.536 Sum_probs=102.3
Q ss_pred CCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeecc
Q 030111 23 PVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 23 ~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
...|++. .+||++||+++ +.++++.+.....++|+++|+++| ||++||||||.|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 17 RGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp GGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred chhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence 3344443 49999999999 567777754323378999999999 9999999999999999999999999999999999
Q ss_pred ce--eccccCCCcEeccccCCccCCCCCHHHHHHHHHHhhc
Q 030111 100 VY--HPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFT 138 (183)
Q Consensus 100 i~--HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 138 (183)
+| ||||+.+|+||+++|.++|+|++++++||.+|+++|.
T Consensus 96 i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 96 NIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 99 9999999999999999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-36 Score=237.80 Aligned_cols=120 Identities=17% Similarity=0.377 Sum_probs=98.2
Q ss_pred CCCCCCCcHHHHHHHHHHHhc--CCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 21 KTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 21 ~~~~~~~~~~~~RL~~El~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
+++.++.+.+.+||++||+++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 6 ~~~~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~ 83 (187)
T 2f4w_A 6 TSSKRAPTTATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMI 83 (187)
T ss_dssp --------CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred cCCCCCccHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Confidence 344567788999999999999 566777774 55 68999999999 99999999999999999999999999999999
Q ss_pred ccceeccccCCCcEecccc---CCccCCCCCHHHHHHHHHHhhcCCCCCC
Q 030111 98 TKVYHPNIDLEGNVCLNIL---REDWKPVLNINTIIYGLFHLFTQPNYED 144 (183)
Q Consensus 98 t~i~HPnV~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~ 144 (183)
|+ ||||+.+|.||+++| .+.|+|+++|.+||.+|+++|.+|+++.
T Consensus 84 T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 84 TP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp SC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred CC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 99 999999999999999 5889999999999999999999998764
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=3.3e-36 Score=235.08 Aligned_cols=138 Identities=14% Similarity=0.278 Sum_probs=113.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCC-----CCCccEeecCCCCCcceEEEEE-eC-CCCCCCC-----------cEEEEEEEe
Q 030111 22 TPVKKQSAGELRLHRDISELNL-----PKTCSITFPNGKDDLMNFEVSI-RP-DEGYYVG-----------GTFVFTFQV 83 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~El~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp-~~tpyeg-----------g~f~~~i~f 83 (183)
+...++..+.+||++||++++. +.++.+. +. ++|+++|+++| || ++|||+| |.|.++|.|
T Consensus 20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~f 97 (186)
T 1zuo_A 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF 97 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-Ec-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEEC
Confidence 4456788999999999999933 3456664 44 67999999999 97 9999998 899999999
Q ss_pred CCCCCCCCCcceeeccceec-cccCCCcEeccccC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHH
Q 030111 84 SPIYPHEAPKVKCKTKVYHP-NIDLEGNVCLNILR-EDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLF 161 (183)
Q Consensus 84 p~~YP~~pP~v~f~t~i~HP-nV~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f 161 (183)
|++||++||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|+... .|..++.+|
T Consensus 98 p~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y 169 (186)
T 1zuo_A 98 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQY 169 (186)
T ss_dssp CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCC
T ss_pred CCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHH
Confidence 99999999999999999999 69999999999997 789999999999999999999986532 233445566
Q ss_pred HHHHHHHH
Q 030111 162 ESNVRRAM 169 (183)
Q Consensus 162 ~~~~~~~~ 169 (183)
.+.++.++
T Consensus 170 ~~~~~~~~ 177 (186)
T 1zuo_A 170 NLARAQQS 177 (186)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 65555543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.91 E-value=8.7e-26 Score=170.74 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=95.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCCCCc
Q 030111 25 KKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGG----------TFVFTFQVSPIYPHEAPK 93 (183)
Q Consensus 25 ~~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~pP~ 93 (183)
+......+||++||+++.. ++ .+. .+|+..|...+ ||.||+|+|| .|.+++.||++||++||+
T Consensus 28 ~~~~~w~~RL~eE~k~L~k----~v-~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe 101 (172)
T 2z6o_A 28 RDRELWVQRLKEEYQSLIR----YV-ENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE 101 (172)
T ss_dssp TCTHHHHHHHHHHHHHHHH----HH-HHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred CccHHHHHHHHHHHHHHHH----Hh-ccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence 4456779999999999954 23 243 67889999999 9999999999 999999999999999999
Q ss_pred ceeecc-ceeccccCCCcEecccc-CC---ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHh
Q 030111 94 VKCKTK-VYHPNIDLEGNVCLNIL-RE---DWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLR 155 (183)
Q Consensus 94 v~f~t~-i~HPnV~~~G~icl~~l-~~---~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~ 155 (183)
|+|.+. +|||||+.+|+||++++ .. .|+|+++|.++|.- .+..++.-|+..+..
T Consensus 102 V~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 102 IAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp CBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred eeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 999998 99999999999999999 43 45699999999842 223345555555554
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.77 E-value=6.6e-19 Score=133.88 Aligned_cols=89 Identities=22% Similarity=0.385 Sum_probs=77.0
Q ss_pred CCCcceEEEEE-eCCCCCCCCcE---EEEEEEeCCCCCCCCCcceeec-------c---ce-eccccCCCcEeccccCCc
Q 030111 55 KDDLMNFEVSI-RPDEGYYVGGT---FVFTFQVSPIYPHEAPKVKCKT-------K---VY-HPNIDLEGNVCLNILRED 119 (183)
Q Consensus 55 ~~n~~~w~~~i-gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t-------~---i~-HPnV~~~G~icl~~l~~~ 119 (183)
++...++-+.+ |...++|+||. |.+.|.||.+||++||.|.|.+ + |+ |||||.+|+||+++|. +
T Consensus 57 ~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~-~ 135 (162)
T 3r3q_A 57 SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH-A 135 (162)
T ss_dssp TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGG-S
T ss_pred CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEeCcccc-c
Confidence 34455666666 76668999998 8899999999999999998855 1 77 9999999999999995 6
Q ss_pred cCC-CCCHHHHHHHHHHhhcCCCCCC
Q 030111 120 WKP-VLNINTIIYGLFHLFTQPNYED 144 (183)
Q Consensus 120 W~p-~~~i~~il~~i~~ll~~p~~~~ 144 (183)
|++ +.++.++|.+|.++|.+|+++.
T Consensus 136 W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 136 WDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 988 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.69 E-value=1.6e-18 Score=128.30 Aligned_cols=92 Identities=15% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCCC
Q 030111 23 PVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGG----------TFVFTFQVSPIYPHEA 91 (183)
Q Consensus 23 ~~~~~~~~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~p 91 (183)
+.+.......||.+||..| ..++... ..+-..|...+ |+.||+|+|+ .|.+++.||.+||.+|
T Consensus 28 gPrd~~~w~~RlkeEy~al--I~yv~~n----K~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tP 101 (168)
T 3kpa_A 28 GPRDGDKWTARLKEEYASL--ITYVEHN----KASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAP 101 (168)
T ss_dssp CTTSTHHHHHHHHHHHHHH--HHHHHHH----HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSC
T ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHhc----ccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCC
Confidence 3445577999999999998 2222222 22234588888 9999999999 9999999999999999
Q ss_pred Ccceeecc-ceeccccCCCcEeccccCCccCCC
Q 030111 92 PKVKCKTK-VYHPNIDLEGNVCLNILREDWKPV 123 (183)
Q Consensus 92 P~v~f~t~-i~HPnV~~~G~icl~~l~~~W~p~ 123 (183)
|+|+|.+. ++||+++.+|+||+++. |+|.
T Consensus 102 PeI~Fp~ldgkt~kmYr~GkICLdIh---wkPl 131 (168)
T 3kpa_A 102 PEIALPELEGKTVKMYRGGKICMTTH---FFPL 131 (168)
T ss_dssp CCCBCGGGTTTCSSEETTTEECCCTT---HHHH
T ss_pred CEeecccccCcCccccCCCcEEeccc---cchh
Confidence 99999995 89999999999999986 5554
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.49 E-value=4.5e-14 Score=105.50 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=70.4
Q ss_pred CCCcceEEEEEeCCCCCCCCcEEE--EEEEeCCCCCCCCCcceeecc------ceeccccCCCcEeccccCCccCC-CCC
Q 030111 55 KDDLMNFEVSIRPDEGYYVGGTFV--FTFQVSPIYPHEAPKVKCKTK------VYHPNIDLEGNVCLNILREDWKP-VLN 125 (183)
Q Consensus 55 ~~n~~~w~~~igp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~G~icl~~l~~~W~p-~~~ 125 (183)
..++..|.++|. .+|+|+.|. +.|.||.+||++||.+ |.++ ..|||||.+|+||++.|.+ |++ ..+
T Consensus 50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~sn 124 (146)
T 3obq_A 50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSD 124 (146)
T ss_dssp TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCC
T ss_pred hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCC
Confidence 467889999996 578999888 5999999999999999 7766 5899999999999999965 977 799
Q ss_pred HHHHHHHHHHhhcC
Q 030111 126 INTIIYGLFHLFTQ 139 (183)
Q Consensus 126 i~~il~~i~~ll~~ 139 (183)
+.+++..++++|.+
T Consensus 125 L~~ll~~l~~~F~~ 138 (146)
T 3obq_A 125 LLGLIQVMIVVFGD 138 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999874
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.60 E-value=0.0064 Score=43.35 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCCCCccEeecCCCCCcceEEEEEeC-CCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 30 GELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRP-DEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 30 ~~~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~igp-~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
...+...|+..|+-..+..+.+.. .....+.+.+.+ .+..-+.-.+.+.|.||++||..||.+...+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~~--~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVLS--ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEECC--SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEcc--CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 455667888888432223343222 223455555532 2222233468899999999999999987654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.13 Score=36.93 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCCccEeecCCC------CCcceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceeec
Q 030111 30 GELRLHRDISELNLPKTCSITFPNGK------DDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 30 ~~~RL~~El~~l~~~~~~~~~~~~~~------~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
...+-..|+..|+-..+..+...... .....+.+.+.+....-..-.+.+.|.+|++||..||.|...+
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 34456778887743333334322211 1235566777443222123468899999999999999998654
No 58
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.93 E-value=0.092 Score=37.58 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHhcCCCCCccEeecCCCC-----CcceEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 28 SAGELRLHRDISELNLPKTCSITFPNGKD-----DLMNFEVSIRPDEG--YYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 28 ~~~~~RL~~El~~l~~~~~~~~~~~~~~~-----n~~~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.....+...|+..|+-..+-.+....... ....+.+.+.+.+. .-..-.+.+.|.||++||..+|.|...
T Consensus 9 ~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 9 ESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred cchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 34455677888887322222233222111 13445556643221 001246899999999999999999874
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.82 E-value=0.039 Score=39.13 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCccEeecCCC--CCcceEEEEEeCC-CCCCC--CcEEEEEEEeCCCCCCCCCcceeec
Q 030111 33 RLHRDISELNLPKTCSITFPNGK--DDLMNFEVSIRPD-EGYYV--GGTFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 33 RL~~El~~l~~~~~~~~~~~~~~--~n~~~w~~~igp~-~tpye--gg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+...|+..|+-..+-.+.+.... .+...+.+.+.+. +..-+ .-.+.+.|.||++||..+|.|...+
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 56788887732222223222211 1233344444222 21111 2468899999999999999998765
No 60
>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}
Probab=94.76 E-value=0.018 Score=29.66 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=12.8
Q ss_pred CcchhhhHHHHHHHHh
Q 030111 1 MIKLFKVKEKQRENAE 16 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (183)
|||+|.+++++..+.+
T Consensus 1 MIkLFSlK~kk~~e~~ 16 (26)
T 1tt5_E 1 MIKLFSLKQQKKEEES 16 (26)
T ss_pred CcchhhhhHHHHHhhc
Confidence 8999999999954443
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.51 E-value=0.22 Score=38.08 Aligned_cols=83 Identities=18% Similarity=0.329 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCCCccEeecCCCCCcceEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcceeeccceeccccCCCc
Q 030111 32 LRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGN 110 (183)
Q Consensus 32 ~RL~~El~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~ 110 (183)
.+|.+|+.++.=..-..+ ..++....+.+ ... |..+.++|.++.+||.+||.+...-|+ |
T Consensus 4 ~~li~Ei~~iGW~~l~~i-----d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------- 64 (186)
T 3zqs_A 4 SSLIEEIGTLGWDKLVYA-----DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--P------- 64 (186)
T ss_dssp CSHHHHHHHHCGGGEEEE-----CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--C-------
T ss_pred HHHHHHHHHhCCceeeee-----cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--C-------
Confidence 367788888811111111 34677777777 444 678999999999999999988755553 1
Q ss_pred EeccccCCccCCCCCHHHHHHHHHHhhc
Q 030111 111 VCLNILREDWKPVLNINTIIYGLFHLFT 138 (183)
Q Consensus 111 icl~~l~~~W~p~~~i~~il~~i~~ll~ 138 (183)
+.-.|.+..++.+++...+..+.
T Consensus 65 -----~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 65 -----FCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp -----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred -----cccccCCCccHHHHHHHHHHHHH
Confidence 11379999999888887766553
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.35 E-value=0.2 Score=35.47 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=28.1
Q ss_pred cceEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCcceee
Q 030111 58 LMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCK 97 (183)
Q Consensus 58 ~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
...+.+.+.+.+..-..-.+.+.|.+|++||..||.|...
T Consensus 39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4567777744331111246899999999999999999754
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.32 E-value=0.34 Score=35.58 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.5
Q ss_pred EEEEEEEeCCCCCCCCCcceeec
Q 030111 76 TFVFTFQVSPIYPHEAPKVKCKT 98 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997554
No 64
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.86 E-value=0.45 Score=34.70 Aligned_cols=24 Identities=17% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEEEeCCCCCCCCCcceeecc
Q 030111 76 TFVFTFQVSPIYPHEAPKVKCKTK 99 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
.+.+.|.+|.+||..||.|...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999986643
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=58.10 E-value=2.1 Score=29.69 Aligned_cols=29 Identities=3% Similarity=-0.156 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 030111 141 NYEDPLNHEAAAVLRDNPKLFESNVRRAM 169 (183)
Q Consensus 141 ~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 169 (183)
....|.+.+.|++|.+|++.|...||.|.
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT 50 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWT 50 (108)
T ss_dssp -----------------------------
T ss_pred ccCCchhHHHHHHHHhchhcccccccccc
Confidence 34568999999999999999999999997
No 66
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=34.67 E-value=16 Score=17.92 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=10.8
Q ss_pred CCCCCcceeeccceecc
Q 030111 88 PHEAPKVKCKTKVYHPN 104 (183)
Q Consensus 88 P~~pP~v~f~t~i~HPn 104 (183)
|...|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 44555566777777763
No 67
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=25.20 E-value=1.1e+02 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.2
Q ss_pred cHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 147 NHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 147 n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
-.|+..+..+|++.|.+.|++++++
T Consensus 277 ~ee~~~l~~~dp~~~~~~~~~Sm~r 301 (552)
T 2fkn_A 277 LDEADRLRQDTPELYVRLAKQSMKK 301 (552)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3478888889999999999998765
No 68
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=24.80 E-value=1.1e+02 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.3
Q ss_pred cHHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 147 NHEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 147 n~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
-.|+..+..+|++.|.+.|++++++
T Consensus 276 ~ee~~~l~~~dp~~~~~~~~~Sm~r 300 (551)
T 1x87_A 276 LDEAAELRARDPKQYIARAKQSIAA 300 (551)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3478888899999999999998765
No 69
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=24.54 E-value=1.1e+02 Score=26.75 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=20.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhc
Q 030111 148 HEAAAVLRDNPKLFESNVRRAMAG 171 (183)
Q Consensus 148 ~~aa~~~~~~~~~f~~~~~~~~~~ 171 (183)
.|+..+..+|++.|.+.|++++++
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~r 305 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAV 305 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 477888889999999999988765
Done!