BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030112
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 223 bits (568), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/180 (60%), Positives = 141/180 (78%), Gaps = 6/180 (3%)
Query: 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN 60
MI+LF +K+++KE+ + ++ KK A +LR+ KDI ELNLP+ C ISF + DDL+N
Sbjct: 3 MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 61 FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
F++ I PDEG+Y++G FVFSF+V YPHD PKVKC+T VYHPNIDLEGNV LN+LREDW
Sbjct: 57 FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDW 116
Query: 121 KPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFE 180
KPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++ FE NV+ +++GGYIG YFE
Sbjct: 117 KPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 176
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 209 bits (532), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 124/155 (80%), Gaps = 1/155 (0%)
Query: 29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
A +LR+ KDI ELNLP+ C ISF + DDL+NF++ I PDEG+Y++G FVFSF+V YP
Sbjct: 6 AAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 64
Query: 89 HDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNH 148
HD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN
Sbjct: 65 HDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK 124
Query: 149 DAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183
+AAE+L+++ FE NV+ + +GGYIG YFE +
Sbjct: 125 EAAEVLQNNRRLFEQNVQRSXRGGYIGSTYFERCL 159
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 113/179 (63%), Gaps = 7/179 (3%)
Query: 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACK---ISFPNGQDD 57
M++L ++++K++++ EN++ P A +RL +D+ L+LP I+ P+ D
Sbjct: 3 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 58 LMN--FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNV 115
+ EV ++PDEGYY G+ F+ + +YP + PKV C K++HPNIDL+GNVCLN+
Sbjct: 61 SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNI 120
Query: 116 LREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174
LREDW P L++ +II GL LF EPN DPLN DAA+LL + F VR+ + GG I
Sbjct: 121 LREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
Query: 19 TGGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGT 76
T ++ R+ L K++ EL NLP CK+ FP+ + L F++++ PDEGYYQ G
Sbjct: 4 TASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGK 62
Query: 77 FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE------DWKPVLNINTII 130
F F EVP Y PKVKC TK++HPNI G +CL++LRE W P + ++
Sbjct: 63 FQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVV 122
Query: 131 YGLYHLFTE-PNHEDPLNHDAAE-LLRD 156
+GL LFT+ N +DPLN +AAE LRD
Sbjct: 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRD 150
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 11/143 (7%)
Query: 24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSF 81
++ R+ L K++ EL NLP CK+ FP+ + L F++++ PDEGYYQ G F F
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFET 67
Query: 82 EVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYH 135
EVP Y PKVKC TK++HPNI G +CL++LRE W P + +++GL
Sbjct: 68 EVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNS 127
Query: 136 LFTE-PNHEDPLNHDAAE-LLRD 156
LFT+ N +DPLN +AAE LRD
Sbjct: 128 LFTDLLNFDDPLNIEAAEHHLRD 150
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ E+ C S DD+ ++ +I PD+ YQ G F P YP A
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
P+V TKVYHPNI+ G +CL++L++ W P L ++ ++ + L T+PN DPL+ + A
Sbjct: 68 PRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVA 127
Query: 152 ELLRDSPACFETNVR 166
+LR + FE R
Sbjct: 128 NVLRANKKQFEDTAR 142
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+YHPNID G +CL+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
VL+ +W P L I T++ + L PN DPL +D AE
Sbjct: 90 VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+YHPNID G +CL+
Sbjct: 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLD 91
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
VL+ +W P L I T++ + L PN DPL +D AE
Sbjct: 92 VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
R+++++ +L P + + P G DDL +++ +I P + Y G F S P YP
Sbjct: 5 RINRELADLGKDPPSSSSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
PKV T++YHPNI+ G++CL++LR+ W P L I+ ++ + L T+PN +DPL +
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 151 AELLRDSPACFETNVR-----MALQGG 172
A + + + +E + R A+ GG
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYAIHGG 150
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 23 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
PK+ TK+YHPNI+ G++CL++LR W P L ++ ++ + L +PN +DPL D
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 141
Query: 151 AELLRDSPACFETNVRMALQ 170
A++ + + + R Q
Sbjct: 142 AQIYKSDKEKYNRHAREWTQ 161
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 11 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
PK+ TK+YHPNI+ G++CL++LR W P L ++ ++ + L +PN +DPL D
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 151 AELLRDSPACFETNVRMALQ 170
A++ + + + R Q
Sbjct: 130 AQIYKSDKEKYNRHAREWTQ 149
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 7 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
PK+ TK+YHPNI+ G++CL++LR W P L ++ ++ + L +PN +DPL D
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 151 AELLRDSPACFETNVRMALQ 170
A++ + + + R Q
Sbjct: 126 AQIYKSDKEKYNRHAREWTQ 145
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+YHPNID G + L+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
VL+ +W P L I T++ + L PN DPL +D AE
Sbjct: 90 VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 83 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 152 ELLR 155
+ +
Sbjct: 143 RIYK 146
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 70 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 129
Query: 152 ELLR 155
+ +
Sbjct: 130 RIYK 133
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ +L + S DDL +++ +I P + YQ G F + P YP
Sbjct: 10 RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV TK+YHPNI+ G++CL++LR W P L ++ ++ + L +PN +DPL D A
Sbjct: 70 PKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIA 129
Query: 152 ELLR 155
+ +
Sbjct: 130 HIYK 133
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 65 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 152 ELLR 155
+ +
Sbjct: 125 RIYK 128
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 75 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 152 EL 153
+
Sbjct: 135 RI 136
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++++L + P +C P G DDL +++ SI P + Y G F S P YP
Sbjct: 6 RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
PK+ TK+YHPNI+ GN+CL++L++ W P L ++ ++ + L T+ N +DPL +
Sbjct: 64 KPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPE 123
Query: 150 AAELLRDSPACFETNVR 166
A + + +E R
Sbjct: 124 IAHIYKTDRPKYEATAR 140
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL+ LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ +L + S DDL +++ +I P E YQ G F + P YP
Sbjct: 8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 68 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 152 ELLR 155
+ +
Sbjct: 128 RIYK 131
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ + + P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++ +L+ S DD+ +++ +I P++ Y G F + P YP
Sbjct: 25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV TK+YHPNI+ +G +CL++L++ W P L I+ ++ + L T+PN +DPL + A
Sbjct: 85 PKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIA 144
Query: 152 ELLRDSPACFETNVR 166
L + ++ R
Sbjct: 145 HLYKSDRMRYDQTAR 159
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 152 ELLR 155
+ +
Sbjct: 127 RIYK 130
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 13 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 73 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 132
Query: 152 ELLR 155
+ +
Sbjct: 133 RIYK 136
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 4 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 64 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 152 ELLR 155
+ +
Sbjct: 124 RIYK 127
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 15 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++CL++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 75 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 152 ELLR 155
+ +
Sbjct: 135 RIYK 138
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+YHP ID G + L+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLD 89
Query: 115 VLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
VL+ +W P L I T++ + L PN DPL +D AE
Sbjct: 90 VLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61 FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
F V I P + ++ GTF +P YP APKV+ TK+YHPN+D G +CL++L++
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 99
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
W P L I T++ + L + PN +DPL +D AE
Sbjct: 100 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 132
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61 FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
F V I P + ++ GTF +P YP APKV+ TK+YHPN+D G +CL++L++
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 96
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
W P L I T++ + L + PN +DPL +D AE
Sbjct: 97 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 129
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61 FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
F V I P + ++ GTF +P YP APKV+ TK+YHPN+D G +CL++L++
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
W P L I T++ + L + PN +DPL +D AE
Sbjct: 95 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 127
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61 FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
F V I P + ++ GTF +P YP APKV+ TK+YHPN+D G +CL++L++
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 92
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
W P L I T++ + L + PN +DPL +D AE
Sbjct: 93 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 125
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 61 FEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLRED 119
F V I P + ++ GTF +P YP APKV+ TK+YHPN+D G +CL++L++
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK 97
Query: 120 WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAE 152
W P L I T++ + L + PN +DPL +D AE
Sbjct: 98 WSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 130
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++++L P C+ P G DDL +++ +I P + YQ G F + P YP
Sbjct: 11 RIQKELSDLQRDPPAHCRAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
PK+ TK+YHPNI+ G++ L++LR W P L ++ ++ + L +PN +DPL D
Sbjct: 69 KPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 128
Query: 150 AAELLRDSPACFETNVRMALQ 170
A++ + + + R Q
Sbjct: 129 IAQIYKSDKEKYNRHAREWTQ 149
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 33 RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHD 90
RL +++ L + IS FP D+L + +I G Y++ + S E P YP++
Sbjct: 34 RLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
AP VK T YHPN+D +GN+ L++L+E W + ++ TI+ + L EPN + PLN A
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 151 AELLRDSPACFE 162
AEL ++ P F+
Sbjct: 153 AELWKN-PTAFK 163
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 8 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++ L++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 68 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 152 ELLR 155
+ +
Sbjct: 128 RIYK 131
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
R+HK++ +L + P C P G DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
PKV T++YHPNI+ G++ L++LR W P L I+ ++ + L +PN +DPL +
Sbjct: 65 KPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 124
Query: 150 AAELLRDSPACFETNVRMALQGGYI-GDEYFEPVM 183
A + + + R Q + G Y E +M
Sbjct: 125 IARIYKTDREKYNRIAREWTQKYAMGGSAYDEAIM 159
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++ L++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 83 PKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 152 ELLR 155
+ +
Sbjct: 143 RIYK 146
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++ L++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 64 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 152 ELLR 155
+ +
Sbjct: 124 RIYK 127
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
RL +D +L +S +D+++ +E I P E +++GTF S E YP+
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
P VK +K++HPN+ +G++CL++L+ W P ++ I+ + L EPN P N AA
Sbjct: 68 PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 127
Query: 152 ELLRDSPACFETNVRMALQGGYI 174
+L +++ +E V+ ++ ++
Sbjct: 128 QLYQENRREYEKRVQQIVEQSWL 150
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
RL +D +L +S +D+++ +E I P E +++GTF S E YP+
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
P VK +K++HPN+ +G++CL++L+ W P ++ I+ + L EPN P N AA
Sbjct: 71 PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAA 130
Query: 152 ELLRDSPACFETNVRMALQGGYI 174
+L +++ +E V+ ++ ++
Sbjct: 131 QLYQENRREYEKRVQQIVEQSWL 153
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 21 GTPVKKQCAREL-RLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVF 79
TP +K+ R+ RL +D P A P + ++ V PD+ + GTF
Sbjct: 2 STPARKRLMRDFKRLQQD------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 80 SFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139
S + YP+ P V+ ++++HPNI +G++CL++L+ W P+ ++ I+ + L +
Sbjct: 56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 140 PNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176
PN P N +AA + +S + VR ++ + D
Sbjct: 116 PNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 24 VKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFE 82
V K+ +ELR T L + +FP+G D+L + ++ P + Y++ + + E
Sbjct: 10 VSKRLQQELR-----TLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKLTLE 63
Query: 83 VPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNH 142
P YP+ P VK T +HPN+D GN+CL++L+E+W ++ TI+ L L EPN+
Sbjct: 64 FPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNN 123
Query: 143 EDPLNHDAAELLRD 156
PLN AA++ +
Sbjct: 124 ASPLNAQAADMWSN 137
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92 PKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAA 151
PKV T++YHPNI+ G++ L++LR W P L I+ ++ + L +PN +DPL + A
Sbjct: 65 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 152 ELLR 155
+ +
Sbjct: 125 RIYK 128
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPH 89
R+HK++ +L + P C+ P G DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RIHKELNDLARDPPAQCRAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHD 149
PKV T++YHP I+ G++ L++LR W P L I+ ++ + L +PN +DPL +
Sbjct: 63 KPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 150 AAELLR 155
A + +
Sbjct: 123 IARIYK 128
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNI 126
PD Y+ GT+ +P YP + PKV+ TK+YHPNID G +CL++L++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLYHLFTEPNHEDPLNHDAAE 152
T++ + L + P +DPL+ AE
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAE 125
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 27 QCAREL-RLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVP 84
Q ++EL RL K++ ++ +I + + IK EG Y+ G F + +P
Sbjct: 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIP 79
Query: 85 PIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE 143
YP++ PK+K TK++HPNI + G +CL+VL+ +W P L I T + + L ++P +
Sbjct: 80 NDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPD 139
Query: 144 DPLNHDAAELLRDSPACF 161
DP + + A++ +++ A F
Sbjct: 140 DPQDAEVAKMYKENHALF 157
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNI 126
PD Y+ GT+ +P YP + PKV+ TK+YHPNID G +CL++L++ W P L I
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 127 NTIIYGLYHLFTEPNHEDPLNHDAAE 152
T++ + L + P +DPL+ AE
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAE 125
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 7/154 (4%)
Query: 21 GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVF 79
TP ++ RL +D L +S ++++M + I EG +++GTF
Sbjct: 2 STPARR------RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 80 SFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139
E YP+ P V+ +K++HPN+ +G++CL++L+ W P ++++I+ + L E
Sbjct: 56 VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDE 115
Query: 140 PNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173
PN P N AA+L +++ +E V ++ +
Sbjct: 116 PNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 56 DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
+D+ +EV I P + Y+ G F + P YP PK+K ++++HPNID EGNVC++
Sbjct: 31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCIS 90
Query: 115 VL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACF 161
+L E W PV + TI+ + + T+PN E P N DAA++ R++ A F
Sbjct: 91 ILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEF 150
Query: 162 ETNVRMALQ 170
+ V ++
Sbjct: 151 KKKVAQCVR 159
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 29 ARELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
A RL K++ E+ C + +F N Q D L+ ++ I PD Y G F P
Sbjct: 4 AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 60
Query: 85 PIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHE 143
YP PK+ KTK+YHPNID +G VCL V+ E+WKP + +I L L +P E
Sbjct: 61 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 120
Query: 144 DPLNHDAAE 152
PL D AE
Sbjct: 121 HPLRADLAE 129
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 29 ARELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
A RL K++ E+ C + +F N Q D L+ ++ I PD Y G F P
Sbjct: 2 AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 58
Query: 85 PIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHE 143
YP PK+ KTK+YHPNID +G VCL V+ E+WKP + +I L L +P E
Sbjct: 59 AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPE 118
Query: 144 DPLNHDAAE 152
PL D AE
Sbjct: 119 HPLRADLAE 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL----REDWKPVLNIN 127
Y+ G F +P YP + P+++ T +YHPNID G +CL+VL + W+P LNI
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 107
Query: 128 TIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
T++ + L +EPN +DPL D + + + F N R
Sbjct: 108 TVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNAR 146
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 21 GTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS 80
TP +++ R+ + K+ + P S P + ++ + I P + Y++GTF
Sbjct: 2 STPARRRLMRDFKRMKE----DAPPGVSAS-PLPDNVMVWNAMIIGPADTPYEDGTFRLL 56
Query: 81 FEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEP 140
E YP+ P VK ++++HPN+ G +CL++L+ W P ++ +I+ + LF +P
Sbjct: 57 LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDP 116
Query: 141 NHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173
N P N +AA L +D + + V+ ++ +
Sbjct: 117 NPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++ E+ L P C P G D++ + +I P Y+ G F P YP
Sbjct: 7 RIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
PKV +T++YH NI+ +G +CL++L+++W P L I+ ++ + L T+ N DPL
Sbjct: 65 KPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 121
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 34 LHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
++K++T L P+ K+ FPN ++DL + +V+I+ EG Y G F + +P
Sbjct: 18 VYKEVTTLTADPPDGIKV-FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 91 APKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDA 150
PK TK++HPN+ G +C+NVL+ DW L I ++ + L PN E LN +A
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 151 AELLRDSPACFETNVRM 167
LL ++ + R+
Sbjct: 136 GRLLLENYEEYAARARL 152
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++ ++ L P C P G D++ + +I P Y+ G F P YP
Sbjct: 52 RIQKELADITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 90 DAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPL 146
PKV +T++YH NI+ +G +CL++L+++W P L I+ ++ + L T+ N DPL
Sbjct: 110 KPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 166
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 57 DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL 116
+++ + + PD+ Y F PP YP P +K TK+YHPN+D G +CL ++
Sbjct: 30 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
Query: 117 -REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNV 165
E+WKP ++ L L PN +PL D A+LL +P F N
Sbjct: 90 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 139
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 57 DLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVL 116
+++ + + PD+ Y F PP YP P +K TK+YHPN+D G +CL ++
Sbjct: 33 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
Query: 117 -REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNV 165
E+WKP ++ L L PN +PL D A+LL +P F N
Sbjct: 93 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNA 142
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE-GNVCLNVLREDWKPVLNINTII 130
Y+ G F +PP YP++ PK+K TK++HPNI + G +CL++L+ +W P L I T +
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 131 YGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ + +P DP + + A+++ ++ F ++
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKL 185
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HP + G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L ED W+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 28 CARELRLHKDITELNLPEACKISFP-NGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPP 85
+R R+ K+I + A I+ + D+ + + + + P Y+ G FV EVP
Sbjct: 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60
Query: 86 IYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHED 144
YP PK++ TKVYHPNI + G +CL++LR W PV+ + + + L L P D
Sbjct: 61 EYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPND 120
Query: 145 PLNHDAAE-LLRD 156
P + + A+ LRD
Sbjct: 121 PQDAEVAQHYLRD 133
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN + P +A + + +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 111 VCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
VCL++L E DW+P + I I+ G+ L EPN + P +A + + +E VR
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 55 QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCL 113
+ DL N+EV+I P YY+ G F + P YP+ P + TK++HPNI G+VC+
Sbjct: 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 93
Query: 114 NVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
++L E W P N+ TI+ + L EPN P N DA+ + R
Sbjct: 94 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 148
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
V L++L ED W+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 47 CKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN 104
CK S +G DLMN++V I KP + + G + + P YP PK + ++HPN
Sbjct: 35 CKSS--DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPN 91
Query: 105 IDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFE 162
+ G VCL++L E+ WKP + I I+ G+ L +PN P +A + + +E
Sbjct: 92 VYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYE 151
Query: 163 TNVR 166
VR
Sbjct: 152 KRVR 155
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 29 ARELRLHKDITELNLPEACKISFP-NGQDDLMNFEVS-IKPDEGYYQNGTFVFSFEVPPI 86
+R R+ K+I + A I+ + D+ + + + + P Y+ G FV EVP
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 87 YPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDP 145
YP PK++ TKVYHPNI + G +CL++L+ W PV+ + + + L L P DP
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 146 LNHDAAE-LLRD 156
+ + A+ LRD
Sbjct: 121 QDAEVAQHYLRD 132
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 55 QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCL 113
+ DL N+EV+I P YY+ G F + P YP+ P + TK++HPNI G+VC+
Sbjct: 31 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCI 90
Query: 114 NVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
++L E W P N+ TI+ + L EPN P N DA+ + R
Sbjct: 91 SILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYR 145
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN 110
P+G +LMN+E +I +G ++ G F YP PK K + ++HPN+ G
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 111 VCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVR 166
V L++L ED W+P + I I+ G+ L EPN +DP +A + + +E VR
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 53 NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV 111
+G DL +E I EG + G + + E P YP PKVK YHPN+ G +
Sbjct: 33 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 92
Query: 112 CLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
CL++L E DW+P + + I+ G+ L PN P A + A ++ V +
Sbjct: 93 CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLL 150
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 53 NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV 111
+G DL +E I EG + G + + E P YP PKVK YHPN+ G +
Sbjct: 35 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTI 94
Query: 112 CLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
CL++L E DW+P + + I+ G+ L PN P A + A ++ V +
Sbjct: 95 CLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLL 152
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 56 DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLN 114
+DL +EV I P + Y+ G F P YP PK+K T+++HPN+D G+VC++
Sbjct: 45 NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCIS 104
Query: 115 VL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
+L E W P+ + TI+ + + +PN + P N DAA+ R+
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRE 159
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 36 KDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKV 94
+++ + L + + +P+ D + F V K EG Y++GT++ ++P YP +P +
Sbjct: 17 REMDYMRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74
Query: 95 KCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTII-YGLYHLFTEPNHEDPLNHDAAE 152
++ HPN+D G+VCL+V+ + W P+ + I L L PN DPLN AA
Sbjct: 75 GFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
Query: 153 LLRDSPACFETNVR 166
LL F+ +R
Sbjct: 135 LLHADRVGFDALLR 148
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 20 GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFV 78
G + +KQC D T+L + + NG +F+V P+ Y+ G +
Sbjct: 1 GTSLTRKQC--------DFTKL-IMAGYDLELNNGST--QDFDVMFHGPNGTAYEGGIWK 49
Query: 79 FSFEVPPIYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLN-INTIIYGLYHL 136
+P YP +P + K+ HPN+D G+VCL+V+ + W P+ + +N L L
Sbjct: 50 VHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQL 109
Query: 137 FTEPNHEDPLNHDAAELLRDSPACFETNVR 166
T PN DPLN DAA LL +E V+
Sbjct: 110 LTYPNPSDPLNSDAASLLMKDKNIYEEKVK 139
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 17 NNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
++ GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G
Sbjct: 2 SHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 55
Query: 76 TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKP 122
F P YP PK++ +++HPNI +G VC+++L E W P
Sbjct: 56 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 115
Query: 123 VLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
V ++ I+ + + EPN E N DA+++ RD
Sbjct: 116 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRD 149
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 17 NNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
+ GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G
Sbjct: 1 GHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 54
Query: 76 TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKP 122
F P YP PK++ +++HPNI +G VC+++L E W P
Sbjct: 55 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 114
Query: 123 VLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
V ++ I+ + + EPN E N DA+++ RD
Sbjct: 115 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRD 148
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 20 GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFV 78
GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G F
Sbjct: 7 AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 60
Query: 79 FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLN 125
P YP PK++ +++HPNI +G VC+++L E W PV +
Sbjct: 61 AILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS 120
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
+ I+ + + EPN E N DA+++ RD
Sbjct: 121 VEKILLSVVSMLAEPNDESGANVDASKMWRD 151
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 20/151 (13%)
Query: 20 GGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFV 78
GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G F
Sbjct: 1 AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 54
Query: 79 FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLR-------------EDWKPVLN 125
P YP PK++ +++HPNI +G VC+++L E W PV +
Sbjct: 55 AILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS 114
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRD 156
+ I+ + + EPN E N DA+++ RD
Sbjct: 115 VEKILLSVVSMLAEPNDESGANVDASKMWRD 145
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 49 ISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107
++ P ++++ ++ I+ P + Y +G F E P YP PK+ + HPNI
Sbjct: 25 VAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP 84
Query: 108 EGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL 154
G VC+++L E W PV ++ I+ + + +EPN E N DA L
Sbjct: 85 NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144
Query: 155 RDSPACFETNVRMAL 169
RD+ FE V++++
Sbjct: 145 RDNRPEFERQVKLSI 159
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID-LEGNVCLNVLREDWKPVLNINTII 130
Y+ G + ++P YP +P + K++HPNID G VCL+V+ + W + ++ I
Sbjct: 65 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIF 124
Query: 131 YG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQ 170
L L PN DPLN DAA + P ++ ++ +Q
Sbjct: 125 ESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQ 165
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
P + Y+ G + ++P YP + PKV+ TK++HPNI + G +CL++L++ W +
Sbjct: 63 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 122
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ T++ L L +DP + A + +P F+ R+
Sbjct: 123 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 164
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
P + Y+ G + ++P YP + PKV+ TK++HPNI + G +CL++L++ W +
Sbjct: 99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 158
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ T++ L L +DP + A + +P F+ R+
Sbjct: 159 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 200
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
P + Y+ G + ++P YP + PKV+ TK++HPNI + G +CL++L++ W +
Sbjct: 50 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 109
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ T++ L L +DP + A + +P F+ R+
Sbjct: 110 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 151
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
P + Y+ G + ++P YP + PKV+ TK++HPNI + G +CL++L++ W +
Sbjct: 48 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 107
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ T++ L L +DP + A + +P F+ R+
Sbjct: 108 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 149
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI-DLEGNVCLNVLREDWKPVLN 125
P + Y+ G + ++P YP + PKV+ TK++HPNI + G +CL++L++ W +
Sbjct: 47 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMT 106
Query: 126 INTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRM 167
+ T++ L L +DP + A + +P F+ R+
Sbjct: 107 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL 148
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y+N F EVP YP + PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
G +CLN+L+ E+W PV ++ ++ ++ L EP + PL+ D ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y+N F EVP YP + PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
G +CLN+L+ E+W PV ++ ++ ++ L EP + PL+ D ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVK-CKTKVYHPNI-DLE 108
P + DL +E I P + Y+N F EVP YP + PK+ + + H N+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155
G +CLN+L+ E+W PV ++ ++ ++ L EP + PL+ D ++R
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 32 LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKP-DEGYYQNGTFVFSFEVPPIYPHD 90
L LH+D +L I+ +D+M +EV I+ +Q F + Y +
Sbjct: 26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYA 85
Query: 91 APKVKCKTKVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLN 147
P VK T +HPN+D G C++ L E W +++I+ L + + P E+P+N
Sbjct: 86 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVN 145
Query: 148 HDAAELLRDSPACFETNVRM 167
+AA +L + + T +R+
Sbjct: 146 LEAARILVKDESLYRTILRL 165
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 20 GGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEG-YYQNGT 76
G P + + RL K++ L + P ++ + Q+ + + V ++ G Y+
Sbjct: 13 GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEK 72
Query: 77 FVFSFEVPPIYPHDAPKVKCKTK--VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLY 134
F F+ YP D+P+V + HP++ G++CL++L EDW P L++ ++ +
Sbjct: 73 FQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
Query: 135 HLFT 138
+ +
Sbjct: 133 SMLS 136
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 44 PEACKISFPNGQDDLMNFEVSIK-PDEGYYQNG--TFVFSFEVPPIYPHDAPKVKCKTKV 100
P + I F D + N+ + +K P + Y T+ S YPH+ P V+ T V
Sbjct: 36 PHSTAI-FSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94
Query: 101 YHPNIDLEGNVCLNVLREDWKPVLNINTII-YGLYHLFTE--PNHEDPLNHDAAELLRDS 157
Y P + EG +C ++ + W P + + +I L +F++ +D +N +A L
Sbjct: 95 YSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKF 154
Query: 158 PACFETNVR 166
P F VR
Sbjct: 155 PQDFAARVR 163
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH-----PNIDLEGNVCLNVL----- 116
P + Y NG F F P YP P V +T H PN+ +G VCL++L
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHG 178
Query: 117 --REDWKP--------VLNINTIIYGLYHLFTEPNHE 143
E W P ++++ ++I F EP +E
Sbjct: 179 RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 87 YPHDAPKVKCKTKVY------HPNIDLEGNVCLNVLREDWKPVLNIN 127
+PH AP+ K + Y +DL N +N++ ED K V+NIN
Sbjct: 352 WPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNIN 398
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 44 PEACKISFPNGQDDLMNF--EVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY 101
PE+C + D M + P ++N + S + P YP PKV +K+
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83
Query: 102 HPNID---LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEP 140
P ++ E + LR DWK + T++ L P
Sbjct: 84 LPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 44 PEACKISFPNGQDDLMNF--EVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY 101
PE+C + D M + P ++N + S + P YP PKV +K+
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 82
Query: 102 HPNID---LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEP 140
P ++ E + LR DWK + T++ L P
Sbjct: 83 LPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATP 123
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGN--VCLNVLR---ED 119
+ P EG Y +G +F E +P P + T PN + N +CL++ +
Sbjct: 55 MTPYEGGYYHGKLIFPRE----FPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDT 106
Query: 120 WKPVLNINTIIYGLYHLFTE 139
W P +++TI+ GL E
Sbjct: 107 WNPAWSVSTILTGLLSFMVE 126
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 119 DWKPVLNINTIIYGLYHLFTEPNH 142
DWK +L+I T+ +G +HL+ P+H
Sbjct: 252 DWKKLLSIETVDFGTFHLY--PSH 273
>pdb|2LHT|A Chain A, Solution Structure Of Venturia Inaequalis
Cellophane-Induced 1 Protein (Vicin1) Domains 1 And 2
Length = 122
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 94 VKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNIN 127
V C+ + E + CLN ++E +KPV++ N
Sbjct: 86 VDCRKDAQTCDKKYESDKCLNAIKEKYKPVVDPN 119
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES
Cerevisiae Gcn2
Length = 138
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 61 FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDW 120
FE++++ + + F + P+YP+ AP+++ K N+ + L +L+ ++
Sbjct: 48 FEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFK------NVQNVMDSQLQMLKSEF 101
Query: 121 KPVLNIN 127
K + N +
Sbjct: 102 KKIHNTS 108
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 77 FVFSFEVPPIYPHDAPKVKC------KTKVYHPNIDLEGNVCLNVLREDWKPVLNINTII 130
F F++P YP AP++ K+Y G +CL + +KP+ N
Sbjct: 80 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYRG-----GKICLT---DHFKPLWARNVPK 131
Query: 131 YGLYHLFT 138
+GL HL
Sbjct: 132 FGLAHLMA 139
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 42 NLPEACKISFPNGQD-DLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99
N+ E + D L N+ +I G ++N + + YP P VK TK
Sbjct: 41 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 100 VYHPNIDLEGNVCLNVLR--EDWKPVLNINTIIYGLYH-LFTEPNHEDP 145
+ +D G V N L ++W I TI+ L + + N P
Sbjct: 101 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 77 FVFSFEVPPIYPHDAPKVKC------KTKVYHPNIDLEGNVCLNVLREDWKPVLNINTII 130
F F++P YP AP++ K+Y G +CL + +KP+ N
Sbjct: 85 FDIEFDIPITYPTTAPEIAVPELDGKTAKMYR-----GGKICLT---DHFKPLWARNVPK 136
Query: 131 YGLYHLFT 138
+GL HL
Sbjct: 137 FGLAHLMA 144
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 42 NLPEACKISFPNGQD-DLMNFEVSIKPDEG-YYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99
N+ E + D L N+ +I G ++N + + YP P VK TK
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 100 VYHPNIDLEGNVCLNVLR--EDWKPVLNINTIIYGLYH-LFTEPNHEDP 145
+ +D G V N L ++W I TI+ L + + N P
Sbjct: 97 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV----CLNVLREDW 120
I P Y+N + E P YP P V+ TK+ ++ V ++VL + W
Sbjct: 76 IGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-W 134
Query: 121 KPVLNINTIIYGLYHLF 137
+ +I ++ L L
Sbjct: 135 QNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV----CLNVLREDW 120
I P Y+N + E P YP P V+ TK+ ++ V ++VL + W
Sbjct: 66 IGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK-W 124
Query: 121 KPVLNINTIIYGLYHLF 137
+ +I ++ L L
Sbjct: 125 QNSYSIKVVLQELRRLM 141
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 77 FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE-------GNVCLNVLREDWKPVLNINTI 129
F F++P YP AP++ P +D + G +CL + +KP+ N
Sbjct: 85 FDIEFDIPITYPTTAPEIAV------PELDGKTAKXYRGGKICLT---DHFKPLWARNVP 135
Query: 130 IYGLYHL 136
+GL HL
Sbjct: 136 KFGLAHL 142
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 77 FVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE-------GNVCLNVLREDWKPVLNINTI 129
F F++P YP AP++ P +D + G +CL + +KP+ N
Sbjct: 80 FDIEFDIPITYPTTAPEIAV------PELDGKTAKXYRGGKICLT---DHFKPLWARNVP 130
Query: 130 IYGLYHL 136
+GL HL
Sbjct: 131 KFGLAHL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,342,804
Number of Sequences: 62578
Number of extensions: 274567
Number of successful extensions: 683
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 118
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)