Query 030112
Match_columns 183
No_of_seqs 130 out of 1159
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.5E-50 9.8E-55 302.9 16.0 144 30-174 6-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1E-49 2.2E-54 295.1 14.0 143 30-174 2-147 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.8E-47 4E-52 276.0 14.5 148 26-175 1-151 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 9.4E-47 2E-51 287.1 16.5 147 29-177 2-151 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-45 2.5E-50 279.9 16.2 142 30-173 2-146 (147)
6 KOG0420 Ubiquitin-protein liga 100.0 2.1E-45 4.5E-50 276.5 15.0 182 1-183 1-184 (184)
7 KOG0425 Ubiquitin-protein liga 100.0 3.7E-43 8E-48 260.6 15.2 144 29-173 5-164 (171)
8 KOG0426 Ubiquitin-protein liga 100.0 7.2E-42 1.6E-46 247.2 13.9 144 27-171 2-161 (165)
9 KOG0424 Ubiquitin-protein liga 100.0 1.1E-41 2.4E-46 249.4 14.8 147 27-174 2-157 (158)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.1E-41 6.8E-46 253.5 13.8 136 33-169 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2E-40 4.3E-45 249.5 15.0 136 32-169 2-141 (141)
12 KOG0418 Ubiquitin-protein liga 100.0 4.1E-40 8.9E-45 251.1 13.2 145 30-176 4-155 (200)
13 KOG0421 Ubiquitin-protein liga 100.0 5.3E-40 1.1E-44 240.6 13.1 145 24-171 24-171 (175)
14 smart00212 UBCc Ubiquitin-conj 100.0 1.9E-39 4.2E-44 245.2 15.7 141 32-173 1-145 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 5.2E-37 1.1E-41 223.8 13.2 147 29-176 2-151 (153)
16 KOG0416 Ubiquitin-protein liga 100.0 1.2E-36 2.6E-41 228.7 9.7 146 28-176 2-150 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 1.5E-32 3.2E-37 207.1 9.0 148 24-173 5-155 (223)
18 KOG0427 Ubiquitin conjugating 100.0 3.3E-28 7.1E-33 176.0 10.5 118 26-146 12-134 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 9.8E-27 2.1E-31 181.2 12.5 114 26-145 2-125 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 3.1E-23 6.7E-28 162.2 12.8 140 31-172 21-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.2E-20 2.6E-25 149.9 9.3 110 27-139 9-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 3E-15 6.5E-20 138.8 6.6 109 29-139 851-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.5 1.2E-13 2.6E-18 128.3 11.1 118 20-139 273-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.4 6.1E-13 1.3E-17 97.2 8.3 108 30-138 6-122 (138)
25 KOG0897 Predicted ubiquitin-co 98.7 5.5E-08 1.2E-12 69.4 6.1 96 77-173 13-114 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.9E-07 4.1E-12 69.5 7.2 67 73-139 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.3 7.8E-07 1.7E-11 65.3 4.7 79 57-139 31-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.2 2.3E-06 5E-11 63.5 5.6 105 22-130 17-135 (161)
29 KOG2391 Vacuolar sorting prote 97.6 0.00033 7.1E-09 59.1 7.8 110 27-140 18-138 (365)
30 KOG3357 Uncharacterized conser 97.4 0.00036 7.8E-09 51.2 5.7 104 22-129 20-137 (167)
31 smart00591 RWD domain in RING 95.8 0.086 1.9E-06 36.7 8.2 39 60-98 24-64 (107)
32 PF14457 Prok-E2_A: Prokaryoti 95.7 0.018 4E-07 44.3 4.4 61 79-139 57-126 (162)
33 PF05773 RWD: RWD domain; Int 95.1 0.059 1.3E-06 37.8 5.2 67 32-100 4-74 (113)
34 PF14462 Prok-E2_E: Prokaryoti 94.1 0.45 9.7E-06 34.9 7.9 79 58-138 23-120 (122)
35 PF09765 WD-3: WD-repeat regio 84.5 1.8 3.8E-05 36.5 4.6 88 28-137 98-186 (291)
36 KOG0309 Conserved WD40 repeat- 81.3 6.1 0.00013 37.5 7.0 67 30-99 421-491 (1081)
37 KOG4018 Uncharacterized conser 76.9 4.1 8.9E-05 32.6 4.0 21 76-96 50-70 (215)
38 PF06113 BRE: Brain and reprod 67.4 25 0.00054 30.2 6.9 41 59-104 54-95 (333)
39 PF14460 Prok-E2_D: Prokaryoti 48.7 28 0.00062 26.8 3.9 42 98-142 90-135 (175)
40 cd00421 intradiol_dioxygenase 38.7 41 0.0009 25.0 3.3 24 74-97 65-89 (146)
41 PF09606 Med15: ARC105 or Med1 38.5 10 0.00023 36.3 0.0 25 75-99 714-738 (799)
42 cd03457 intradiol_dioxygenase_ 36.3 46 0.001 26.1 3.3 24 74-97 86-109 (188)
43 KOG1047 Bifunctional leukotrie 35.1 37 0.0008 31.3 2.9 30 69-99 247-279 (613)
44 PF06113 BRE: Brain and reprod 35.1 45 0.00097 28.7 3.3 23 76-98 307-329 (333)
45 PF12884 TORC_N: Transducer of 35.0 6.8 0.00015 25.6 -1.3 25 158-182 2-26 (67)
46 PF03366 YEATS: YEATS family; 34.7 1.4E+02 0.003 20.1 5.1 42 59-102 2-44 (84)
47 KOG0177 20S proteasome, regula 34.6 12 0.00026 29.5 -0.2 32 108-139 135-166 (200)
48 PF08203 RNA_polI_A14: Yeast R 32.5 26 0.00057 23.5 1.2 16 26-41 56-71 (76)
49 KOG0662 Cyclin-dependent kinas 31.8 45 0.00097 26.7 2.6 55 89-143 167-225 (292)
50 KOG4274 Positive cofactor 2 (P 31.5 2.2E+02 0.0048 26.5 7.2 58 28-91 618-675 (742)
51 PF14455 Metal_CEHH: Predicted 30.2 2.1E+02 0.0045 22.0 5.8 41 57-99 35-76 (177)
52 cd03459 3,4-PCD Protocatechuat 27.2 83 0.0018 23.9 3.3 24 74-97 72-100 (158)
53 TIGR03737 PRTRC_B PRTRC system 27.1 97 0.0021 25.2 3.8 33 103-139 139-172 (228)
54 PRK11700 hypothetical protein; 26.7 3.2E+02 0.0069 21.5 9.0 98 27-131 49-183 (187)
55 KOG4445 Uncharacterized conser 25.1 81 0.0018 26.9 3.1 25 75-99 45-69 (368)
56 smart00340 HALZ homeobox assoc 24.4 53 0.0012 19.4 1.4 14 28-41 18-31 (44)
57 PF00845 Gemini_BL1: Geminivir 21.9 2.1E+02 0.0046 23.6 4.8 45 57-101 101-154 (276)
58 PF11333 DUF3135: Protein of u 21.1 1.9E+02 0.0041 19.6 3.8 28 145-172 4-31 (83)
59 PF10346 Con-6: Conidiation pr 20.9 1.1E+02 0.0023 17.5 2.1 29 127-155 4-32 (36)
60 PF01175 Urocanase: Urocanase; 20.8 1.2E+02 0.0025 27.8 3.4 26 147-172 271-296 (546)
61 PF13950 Epimerase_Csub: UDP-g 20.8 85 0.0018 19.8 1.9 18 119-136 37-54 (62)
62 cd05845 Ig2_L1-CAM_like Second 20.4 1.9E+02 0.004 20.0 3.8 26 72-99 16-41 (95)
63 PF09280 XPC-binding: XPC-bind 20.1 1.5E+02 0.0033 18.6 3.0 22 145-166 33-54 (59)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-50 Score=302.90 Aligned_cols=144 Identities=36% Similarity=0.697 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
+.+||++|++.+ +.++++++. +..++|+++|++.| ||.+||||||+|++.|.||++||++||+|+|.++|||||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~ 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence 899999999999 445677775 66345999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
.+|.||+++|+++|+|++++++||.+|+++|.+||.++|+|.|||++|++|+++|.++||+++++++.
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998864
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-49 Score=295.06 Aligned_cols=143 Identities=34% Similarity=0.716 Sum_probs=136.9
Q ss_pred HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
+.+||.+|++++ ++++++.+. ++ .+|+++|+++| ||.+||||||+|.+.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence 356999999999 677888886 66 89999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
.+|.||+|+|++.|+|+++|..||.+|+++|.+|++++|++.|+|.+|+.|+.+|++.||+|+.+++.
T Consensus 80 ~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 80 SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-47 Score=276.00 Aligned_cols=148 Identities=26% Similarity=0.628 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|+..|.+||++|++++ +++.|++.. |. ++|++.|.+.| ||.+|||+||+|++.|.|+++||.+||.|+|.+.+||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 4568899999999999 567777765 77 89999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~ 175 (183)
||||.+|.+|+|+|.-.|+|.|++.+||.+||+||.+|++++|+|.|||++|.+|+.+|.+++++.+.|.+..
T Consensus 79 PNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~ 151 (152)
T KOG0419|consen 79 PNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSD 151 (152)
T ss_pred CCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988754
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.4e-47 Score=287.14 Aligned_cols=147 Identities=30% Similarity=0.600 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
++.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 3579999999999 456777764 55 78999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112 106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE 177 (183)
Q Consensus 106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~ 177 (183)
+.+|.||+++|.+.|+|++|+.+||.+|+++|.+|++++|+|.|||++|++|+++|+++||+|+.+++.++.
T Consensus 80 ~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~~~ 151 (152)
T PTZ00390 80 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKHNK 151 (152)
T ss_pred CCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-45 Score=279.89 Aligned_cols=142 Identities=33% Similarity=0.733 Sum_probs=134.3
Q ss_pred HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence 468999999999 456677665 55 68999999999 99999999999999999999999999999999999999999
Q ss_pred CCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 107 LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 107 ~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
.+|.||++++.+.|+|++|+++||.+|+++|.+|++++|+|.|||++|.+|+++|.++||+|+.+++
T Consensus 80 ~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 80 SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998775
No 6
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-45 Score=276.47 Aligned_cols=182 Identities=60% Similarity=1.072 Sum_probs=170.6
Q ss_pred CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceE--EEEEEeCCCCCCCCcEEE
Q 030112 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMN--FEVSIKPDEGYYQNGTFV 78 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~--w~~~igp~~tpyegg~f~ 78 (183)
|+.+|+++++++++.++.++ |+..+.+.++.||++|..+++.++++.+.++...++++. ++++|.|.++.|+||.|.
T Consensus 1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~ 79 (184)
T KOG0420|consen 1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR 79 (184)
T ss_pred CccHHHHHHhhhhhcccccc-cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence 88999999988877775533 667789999999999999999999999888886677666 888999999999999999
Q ss_pred EEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCH
Q 030112 79 FSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSP 158 (183)
Q Consensus 79 ~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~ 158 (183)
|.+.+|+.||++||+|.++|+|||||||.+|.||+++|+++|+|+.++.+|+.+|+.+|.+|+++||+|.|||..+++|+
T Consensus 80 F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~ 159 (184)
T KOG0420|consen 80 FKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR 159 (184)
T ss_pred EEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCC
Q 030112 159 ACFETNVRMALQGGYIGDEYFEPVM 183 (183)
Q Consensus 159 ~~f~~~~r~~~~~~~~~~~~~~~~~ 183 (183)
+.|+.+||+.+.+|+++...|+.+|
T Consensus 160 e~F~~~Vr~~m~gg~v~~~~f~~~~ 184 (184)
T KOG0420|consen 160 EGFENNVRRAMSGGCVGQTSFDRCM 184 (184)
T ss_pred HHHHHHHHHHHhcCccCceeccccC
Confidence 9999999999999999999999876
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-43 Score=260.62 Aligned_cols=144 Identities=31% Similarity=0.637 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
++...|+++|++| ++.+++.+.+.+ .+|+++|.|.| ||++|+||||.|+..+.||.+||++||+++|.++||||||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 3678899999999 556788887666 78999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112 106 DLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGG 172 (183)
Q Consensus 106 ~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~ 172 (183)
|++|.||+++|. +.|.|.+|+++||++|.+||.+||.++|+|-|||+.|++|+++|.++|++|+.+.
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999999994 4699999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 030112 173 Y 173 (183)
Q Consensus 173 ~ 173 (183)
.
T Consensus 164 ~ 164 (171)
T KOG0425|consen 164 Q 164 (171)
T ss_pred H
Confidence 5
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-42 Score=247.17 Aligned_cols=144 Identities=28% Similarity=0.585 Sum_probs=136.7
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
...|++||++||++| +.++|+... |.+++|+++|.+.| ||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 457899999999999 778888775 88799999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHh
Q 030112 104 NIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQ 170 (183)
Q Consensus 104 nV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~ 170 (183)
||+++|+||+++|. +.|+|..+++.||.++.+||.+||-++.+|.+|+.++++|+++|.+.||..+.
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999994 57999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 030112 171 G 171 (183)
Q Consensus 171 ~ 171 (183)
+
T Consensus 161 K 161 (165)
T KOG0426|consen 161 K 161 (165)
T ss_pred H
Confidence 6
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=249.39 Aligned_cols=147 Identities=28% Similarity=0.518 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
++.+..||+.|-+.+ +++-|+.+. |. +..|+..|++.| |+.+|+||||.|.+++.||++||.+||++.|.++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~Ak-P~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAK-PVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeee-ccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 556799999999999 667776653 43 245799999999 9999999999999999999999999999999999
Q ss_pred ccccCccCCCceecccccCc--ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 100 VYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 100 i~HpnV~~~G~vcl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
+||||||++|.||+++|.++ |+|+.||.+||.+||.||.+||+.+|+|.||..+|.+|+.+|.++||.++++++.
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999765 9999999999999999999999999999999999999999999999999988764
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.1e-41 Score=253.55 Aligned_cols=136 Identities=39% Similarity=0.762 Sum_probs=123.0
Q ss_pred HHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCC
Q 030112 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEG 109 (183)
Q Consensus 33 RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G 109 (183)
||++|++++ +.+.++.+.... .+|+++|+++| ||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 899999999 678888887443 45999999999 99999999999999999999999999999999999999999999
Q ss_pred ceecccccC-cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112 110 NVCLNVLRE-DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL 169 (183)
Q Consensus 110 ~vcl~~l~~-~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~ 169 (183)
.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.||+++|++|+++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 499999999999999999999999999999999999999999999999983
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2e-40 Score=249.52 Aligned_cols=136 Identities=35% Similarity=0.730 Sum_probs=127.7
Q ss_pred HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCC
Q 030112 32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE 108 (183)
Q Consensus 32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 108 (183)
+||++|++++ +.++++.+. +. ++|+++|+++| |+++|||+||.|+++|.||++||++||.|+|.++++||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCC
Confidence 7999999999 445676664 55 67999999999 9999999999999999999999999999999999999999999
Q ss_pred CceecccccCc-ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112 109 GNVCLNVLRED-WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL 169 (183)
Q Consensus 109 G~vcl~~l~~~-W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~ 169 (183)
|.||++++..+ |+|++++++||.+|+++|.+|+.++|+|.|||.+|++|+++|+++|++|+
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 80 GKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999999877 99999999999999999999999999999999999999999999999874
No 12
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-40 Score=251.15 Aligned_cols=145 Identities=26% Similarity=0.486 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhcCC-----CCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 30 RELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 30 ~~~RL~~E~~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
+.+||++|.+++.. ..++.+. ..++|+.+..+.| ||++||||||+|.++|++|++|||+||+|+|.|+||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve--~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVE--MVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEE--EccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecC
Confidence 78999999999932 3455554 2358999999999 99999999999999999999999999999999999999
Q ss_pred CccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 104 NIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 104 nV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
||++ +|.||+|++.+.|.+++|+..+|.+||++|+.|++.+|.+..+|++|.+|++.|.+.||.|+..++.+.
T Consensus 82 nVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 82 NVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999888763
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-40 Score=240.58 Aligned_cols=145 Identities=30% Similarity=0.606 Sum_probs=136.6
Q ss_pred CCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112 24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
.....+..+||++|+..| ...+|++. +|+ ++|++.|.++| ||++|+|+|-.|++.+.||.+||++||.|.|+|++
T Consensus 24 v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc 101 (175)
T KOG0421|consen 24 VVDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPC 101 (175)
T ss_pred cccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccc
Confidence 334678899999999999 56788887 688 78999999999 99999999999999999999999999999999999
Q ss_pred cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112 101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG 171 (183)
Q Consensus 101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 171 (183)
||||||..|.||+|+|.+.|+..|+++.||.+||++|-+||.++|+|..||+++. |+++|++.+..++.+
T Consensus 102 ~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 102 FHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998 999999999887765
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.9e-39 Score=245.21 Aligned_cols=141 Identities=36% Similarity=0.715 Sum_probs=131.2
Q ss_pred HHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCC
Q 030112 32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLE 108 (183)
Q Consensus 32 ~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~ 108 (183)
+||++|++++ +.++++.+ .+..++|+++|+++| ||.+|||+||.|+++|.||++||++||+|+|.+++|||||+++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v-~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISA-YPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEE-EECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 5999999999 45566665 355345999999999 9999999999999999999999999999999999999999999
Q ss_pred Cceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 109 GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 109 G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.||+++|.+|++.|+++|++++.++.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 89999999999999999999999999999999999999999999999999998763
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-37 Score=223.76 Aligned_cols=147 Identities=31% Similarity=0.562 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhhcC--CCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 29 ARELRLHKDITELN--LPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~E~~~l~--~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
.+.+||++|+.+|. ....+. .+...+.|++.|++.|.|.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~r-n~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFR-NIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHh-hhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 46899999999993 233222 133446899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 107 LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 107 ~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
+.|.+|+.++. ++|.|+.+.++||+.|..++.+|+++.|++.|+|..|.+|+..|.++|-++++++...-
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcC
Confidence 99999999985 78999999999999999999999999999999999999999999999999999987643
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=228.68 Aligned_cols=146 Identities=29% Similarity=0.575 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
++..|||-.|...|- .++..+++. .+++.+++|.+ ||.+|||+||++++++.+|++||++.|.|.|.++||||||+
T Consensus 2 s~~~rRid~Dv~KL~-~s~yeV~~i--nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID 78 (189)
T KOG0416|consen 2 SSGKRRIDTDVMKLL-MSDYEVTII--NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID 78 (189)
T ss_pred CCcccchhhHHHHHH-hcCCeEEEe--cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence 345689999999983 234455532 46799999999 99999999999999999999999999999999999999999
Q ss_pred C-CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 107 L-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 107 ~-~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
. +|.||++.+++.|+|.+.+..|+.. |-.+|..||+.+|+|.|||.+|.++++.|.+++|+++++|+...
T Consensus 79 e~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 79 EASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred hccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 9 9999999999999999999999975 57899999999999999999999999999999999999999655
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.5e-32 Score=207.07 Aligned_cols=148 Identities=28% Similarity=0.530 Sum_probs=135.9
Q ss_pred CCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112 24 VKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
.+-.....+.+.+|++.+ .+|.|+.+. +. ++|+....+.| ||.||||++|.|++.+.+..|||.+||+-+|+|+|
T Consensus 5 enlpp~vik~~~kEl~~l~~~PPdGIKV~-~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKI 82 (223)
T KOG0423|consen 5 ENLPPNVIKQLAKELKSLDESPPDGIKVV-VN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKI 82 (223)
T ss_pred cCCChHHHHHHHHHHHhcccCCCCceEEe-cC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeee
Confidence 344566788999999999 566777774 44 78999999999 99999999999999999999999999999999999
Q ss_pred cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|||||-.+|.||..+|..+|.|..+|..||..|.++|..|++++.+|++|.+++.++.++|.++||-++.=.+
T Consensus 83 FHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa 155 (223)
T KOG0423|consen 83 FHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHA 155 (223)
T ss_pred ccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765433
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-28 Score=175.99 Aligned_cols=118 Identities=24% Similarity=0.535 Sum_probs=105.3
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc-cc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK-VY 101 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-i~ 101 (183)
.+..|.+||++|+.++ ++|+|.... . .+|+..|.+.+ |.+||.|+|.+|.+.++||+.||+..|.|.|..+ ..
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~--v-~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR--V-TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee--c-ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 4778899999999999 455666554 3 78999999999 9999999999999999999999999999999977 56
Q ss_pred ccCccCCCceecccccCcccCCccHHhHHHHHHHhhcC-CCCCCCc
Q 030112 102 HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTE-PNHEDPL 146 (183)
Q Consensus 102 HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~ 146 (183)
|||||.||.||+++|.++|+|++++.+|..+|.+||++ .....|.
T Consensus 89 HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred CCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 99999999999999999999999999999999999997 3444444
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.8e-27 Score=181.24 Aligned_cols=114 Identities=25% Similarity=0.501 Sum_probs=98.8
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc--c
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK--V 100 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i 100 (183)
.+.++.+||++||+.| ++.+++.+. |. ++||.+||.++ ||++|||+||.|+.+|.||++||++||.|+++|| .
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~-P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVAR-PN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccC-CC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 3567899999999999 566777664 76 89999999999 9999999999999999999999999999999987 4
Q ss_pred cccCccCCCceeccccc---CcccCCccHHhHHHHHHHhhcC--CCCCCC
Q 030112 101 YHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTE--PNHEDP 145 (183)
Q Consensus 101 ~HpnV~~~G~vcl~~l~---~~W~p~~~i~~iL~~i~~ll~~--p~~~~p 145 (183)
|-+| -++|+++-+ +.|.|+|++..||.+|.++|.+ |...+.
T Consensus 80 Fktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 80 FKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred eecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 4444 489998874 7899999999999999999886 555443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-23 Score=162.21 Aligned_cols=140 Identities=22% Similarity=0.380 Sum_probs=124.0
Q ss_pred HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCC--CCCceeEeccccccCcc
Q 030112 31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPH--DAPKVKCKTKVYHPNID 106 (183)
Q Consensus 31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~ 106 (183)
...|..||..+ ++.+|+++ .|. ..|-+.|-++|....+.|.||+|+|+|.+|++||. +.|+|.|.+.+|||+|.
T Consensus 21 ey~llAEf~lV~~ekL~gIyv-iPS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYV-IPS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHHhccCCceEE-ccc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 34566666666 67889888 488 78889999999778889999999999999999996 68999999999999999
Q ss_pred C-CCceecccccCcccCC-ccHHhHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112 107 L-EGNVCLNVLREDWKPV-LNINTIIYGLYHLFTEPNHEDP--LNHDAAELLRDSPACFETNVRMALQGG 172 (183)
Q Consensus 107 ~-~G~vcl~~l~~~W~p~-~~i~~iL~~i~~ll~~p~~~~p--~n~eaa~~~~~~~~~f~~~~r~~~~~~ 172 (183)
+ ++.+|+......|... ..|+++|..+|.+|.+|+...+ .|+||+.+|.+++++|.++|++|+..+
T Consensus 99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9 8999999887779665 7899999999999999987776 499999999999999999999998754
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-20 Score=149.86 Aligned_cols=110 Identities=23% Similarity=0.449 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 27 QCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
-+++.+||++|.++++.|...+...|. ++|+++|+++| ||.+|-||||+|+.+|.||.+||++||.+-.+|+- .-+
T Consensus 9 KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRF 85 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRF 85 (314)
T ss_pred cCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cce
Confidence 467899999999999766665566677 89999999999 99999999999999999999999999999988862 112
Q ss_pred cCCCceeccccc---CcccCCccHHhHHHHHHHhhcC
Q 030112 106 DLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTE 139 (183)
Q Consensus 106 ~~~G~vcl~~l~---~~W~p~~~i~~iL~~i~~ll~~ 139 (183)
--+.+||+++-. +.|.|+|+|..-|..|..+|-.
T Consensus 86 E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 86 EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred eeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 225689999884 7899999999999999887764
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-15 Score=138.78 Aligned_cols=109 Identities=26% Similarity=0.482 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc--cccc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK--VYHP 103 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hp 103 (183)
..++..+.|++-+ ..+.++.+.. .++-+....+.| |+.+|||..|.|.|.|.||++||.+||.+...+. .++|
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~--~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRA--YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEe--chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 6677778888887 5567777653 356666688889 9999999999999999999999999999999976 7899
Q ss_pred CccCCCceeccccc-------CcccCCccHHhHHHHHHHhhcC
Q 030112 104 NIDLEGNVCLNVLR-------EDWKPVLNINTIIYGLYHLFTE 139 (183)
Q Consensus 104 nV~~~G~vcl~~l~-------~~W~p~~~i~~iL~~i~~ll~~ 139 (183)
|.|.+|+||+++|+ +-|+|+-+|.++|.+||.++.+
T Consensus 929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999999995 5699999999999999998764
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=128.34 Aligned_cols=118 Identities=27% Similarity=0.528 Sum_probs=104.2
Q ss_pred CCCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeE
Q 030112 20 GGTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKC 96 (183)
Q Consensus 20 ~~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 96 (183)
+.+....+....+|+++|++-+ +.++++.+. +. +.......+.| |+.+|||++|+|.|.|.||..||..||.+.+
T Consensus 273 ~~~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~ 350 (1101)
T KOG0895|consen 273 GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKY 350 (1101)
T ss_pred CCCCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEE
Confidence 4455567888899999999999 667776664 66 67888899999 9999999999999999999999999999999
Q ss_pred ecc---ccccCccCCCceeccccc-------CcccCC-ccHHhHHHHHHHhhcC
Q 030112 97 KTK---VYHPNIDLEGNVCLNVLR-------EDWKPV-LNINTIIYGLYHLFTE 139 (183)
Q Consensus 97 ~t~---i~HpnV~~~G~vcl~~l~-------~~W~p~-~~i~~iL~~i~~ll~~ 139 (183)
.+. .+.||.|.+|+||+++|. +.|+|. .++.++|..||.++.+
T Consensus 351 lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 351 LTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred eeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 977 789999999999999883 679999 8999999999998875
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.1e-13 Score=97.17 Aligned_cols=108 Identities=21% Similarity=0.386 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCC---CCCceEeccCCCCCc--eEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 30 RELRLHKDITELNL---PEACKISFPNGQDDL--MNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 30 ~~~RL~~E~~~l~~---~~~~~~~~~~~~~n~--~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
...||.+|+..-++ +..+++.+.+ .+|+ ..|...| ||+.|+||+.+|.++|.+.++||..||.|+|.+++--.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred cchhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 34678888877632 3344555555 4554 5899999 99999999999999999999999999999999999999
Q ss_pred CccC-CCceecccc--cCcccCCccHHhHHHHHHHhhc
Q 030112 104 NIDL-EGNVCLNVL--REDWKPVLNINTIIYGLYHLFT 138 (183)
Q Consensus 104 nV~~-~G~vcl~~l--~~~W~p~~~i~~iL~~i~~ll~ 138 (183)
.|+. +|.|.-..+ -.+|.-.|+++.+|..+..++.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 9988 777765433 3789999999999999975443
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.5e-08 Score=69.38 Aligned_cols=96 Identities=14% Similarity=0.308 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCCCCCCceeEeccc-cccCccCCCceeccccc-CcccCCccHHhHHHHHHHhhcCCC--CCCCccHHHHH
Q 030112 77 FVFSFEVPPIYPHDAPKVKCKTKV-YHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPN--HEDPLNHDAAE 152 (183)
Q Consensus 77 f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~--~~~p~n~eaa~ 152 (183)
.-+.+.|+++||+.||.++...|. --.-|-.+|.||+.++. ++|+.+++++.++++|-.++.... ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 456688999999999999877553 23334458999999995 789999999999999999999864 4455544433
Q ss_pred HHHh--CHHHHHHHHHHHHhcCC
Q 030112 153 LLRD--SPACFETNVRMALQGGY 173 (183)
Q Consensus 153 ~~~~--~~~~f~~~~r~~~~~~~ 173 (183)
+|.. -.+.|+..++-.-+-++
T Consensus 92 ~~s~~qa~~sfksLv~~heksg~ 114 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIHEKSGW 114 (122)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCC
Confidence 5544 44667777776655554
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.59 E-value=1.9e-07 Score=69.52 Aligned_cols=67 Identities=21% Similarity=0.482 Sum_probs=61.0
Q ss_pred CCcEEEEEEEeCCCCCCCCCceeEeccc---cccCccCCCceec---ccccCcccCCccHHhHHHHHHHhhcC
Q 030112 73 QNGTFVFSFEVPPIYPHDAPKVKCKTKV---YHPNIDLEGNVCL---NVLREDWKPVLNINTIIYGLYHLFTE 139 (183)
Q Consensus 73 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~vcl---~~l~~~W~p~~~i~~iL~~i~~ll~~ 139 (183)
.|+.+.+.|.||++||..||.|....+. +=|||+.+|.+|+ ....+.|.|.-.+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 67778899999999999999998885
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.33 E-value=7.8e-07 Score=65.27 Aligned_cols=79 Identities=25% Similarity=0.441 Sum_probs=53.7
Q ss_pred CceEEEEEEeCCCCCCCCcEE--EEEEEeCCCCCCCCCceeEecccc-----ccCccCCCceecccccCcccC-CccHHh
Q 030112 57 DLMNFEVSIKPDEGYYQNGTF--VFSFEVPPIYPHDAPKVKCKTKVY-----HPNIDLEGNVCLNVLREDWKP-VLNINT 128 (183)
Q Consensus 57 n~~~w~~~igp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i~-----HpnV~~~G~vcl~~l~~~W~p-~~~i~~ 128 (183)
.+....++| --.|.|..| .+.|.+|.+||..||.+....... +.+||.+|+|.+..+ ++|.+ ..++.+
T Consensus 31 ~LL~L~Gti---pi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 31 LLLCLYGTI---PITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE---EECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred eEEEEecCc---ccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 455666666 123556555 677889999999999998874422 449999999998888 46766 889999
Q ss_pred HHHHHHHhhcC
Q 030112 129 IIYGLYHLFTE 139 (183)
Q Consensus 129 iL~~i~~ll~~ 139 (183)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999887764
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.25 E-value=2.3e-06 Score=63.50 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCCcchHHHHHHHHHHhhc------CC-CCCceEeccCCCCCceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112 22 TPVKKQCARELRLHKDITEL------NL-PEACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAP 92 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l------~~-~~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP 92 (183)
.+++.......||..||..| ++ ...-.+.+.. ..+-+.|.+.+ ....--|| |.+++.+|..||..||
T Consensus 17 AGPrd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~kYE---F~~eFdIP~tYP~t~p 92 (161)
T PF08694_consen 17 AGPRDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLKYE---FDLEFDIPVTYPTTAP 92 (161)
T ss_dssp --TTSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEEEE---EEEEEE--TTTTTS--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeeeEE---EeeecCCCccCCCCCc
Confidence 34556688899999999998 21 2333455555 56678898888 44555565 7888888999999999
Q ss_pred ceeEecc-ccccCccCCCceeccccc-Ccc---cCCccHHhHH
Q 030112 93 KVKCKTK-VYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII 130 (183)
Q Consensus 93 ~v~f~t~-i~HpnV~~~G~vcl~~l~-~~W---~p~~~i~~iL 130 (183)
.|....- --..-.|.+|+||++.-. .-| .|.++|...|
T Consensus 93 Ei~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 93 EIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp --B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred ceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 9987632 345667889999998653 446 5667776554
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00033 Score=59.14 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCC-CCceEEEEEEeCCCCCCCCcEEE--EEEEeCCCCCCCCCceeEecc--
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQ-DDLMNFEVSIKPDEGYYQNGTFV--FSFEVPPIYPHDAPKVKCKTK-- 99 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~-~n~~~w~~~igp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~-- 99 (183)
-..+.+-+...+... ..+..-.+.+.++. .+++...++| -.+|.|.+|. +.|.+.+.||..||.+.....
T Consensus 18 ~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTI---p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~ 94 (365)
T KOG2391|consen 18 KDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTI---PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTST 94 (365)
T ss_pred hhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCcc---cccccCCcccceEEEEecccCCCCCCeEEecCCch
Confidence 344455555555555 22333344444432 3455555555 4466666654 667789999999999976632
Q ss_pred ---ccccCccCCCceecccccCcc-cCCccHHhHHHHHHHhhcCC
Q 030112 100 ---VYHPNIDLEGNVCLNVLREDW-KPVLNINTIIYGLYHLFTEP 140 (183)
Q Consensus 100 ---i~HpnV~~~G~vcl~~l~~~W-~p~~~i~~iL~~i~~ll~~p 140 (183)
-.|-||+.+|.|.+..|. +| -|+.++..++..|.+.|.++
T Consensus 95 M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 95 MIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred hhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCC
Confidence 129999999999999995 67 56688999999999988874
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00036 Score=51.22 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=64.6
Q ss_pred CCCCcchHHHHHHHHHHhhc------CCC-CCceEeccCCCCCceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112 22 TPVKKQCARELRLHKDITEL------NLP-EACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAP 92 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l------~~~-~~~~~~~~~~~~n~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP 92 (183)
.+++......+||..||+.| ++. ..-.+.+.. ...-+.|.+.+ ...---|| |.+++.+|-.||..+|
T Consensus 20 agprd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrles-n~egtrwfgkcwy~hnllkye---fdvefdipityp~tap 95 (167)
T KOG3357|consen 20 AGPRDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLES-NKEGTRWFGKCWYVHNLLKYE---FDVEFDIPITYPTTAP 95 (167)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhCcccCCcceEecc-CccccceehhhhHhhhhhhhe---eeeeeccccccCCCCc
Confidence 34566777889999999998 222 222344333 23345666666 23333444 7778888999999999
Q ss_pred ceeEecc-ccccCccCCCceecc-cccCcc---cCCccHHhH
Q 030112 93 KVKCKTK-VYHPNIDLEGNVCLN-VLREDW---KPVLNINTI 129 (183)
Q Consensus 93 ~v~f~t~-i~HpnV~~~G~vcl~-~l~~~W---~p~~~i~~i 129 (183)
.+...-- --.-..+.+|.||+. .+..-| .|.++|...
T Consensus 96 eialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 96 EIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred cccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 9875421 223345678999995 445567 345555443
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.84 E-value=0.086 Score=36.69 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=27.1
Q ss_pred EEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 60 NFEVSIKPDEG--YYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 60 ~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.+.+.+.+... .-..-.+.+.+.||++||..+|.|.+.+
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence 45555532221 2334568899999999999999998765
No 32
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.68 E-value=0.018 Score=44.27 Aligned_cols=61 Identities=21% Similarity=0.442 Sum_probs=49.1
Q ss_pred EEEEeCCCCCCCCCceeEecccc---ccCccCC-----Cceeccccc-CcccCCccHHhHHHHHHHhhcC
Q 030112 79 FSFEVPPIYPHDAPKVKCKTKVY---HPNIDLE-----GNVCLNVLR-EDWKPVLNINTIIYGLYHLFTE 139 (183)
Q Consensus 79 ~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~ 139 (183)
+.|.|+.+||..+|.|.+....| +||++.. ..+|+.--. ..|.+..+++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999887776654 5888875 679985443 5799999999999999887664
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.08 E-value=0.059 Score=37.83 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCC-CCCceEeccCCCCCceEEEEEE---eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112 32 LRLHKDITELNL-PEACKISFPNGQDDLMNFEVSI---KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (183)
Q Consensus 32 ~RL~~E~~~l~~-~~~~~~~~~~~~~n~~~w~~~i---gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
.+...|+..|+. -++.... ....+...+.+.+ ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDFIE--IESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSESS--STSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCccc--cccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 345666766621 1111111 1133444555555 12334444668999999999999999999877553
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.15 E-value=0.45 Score=34.91 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=51.3
Q ss_pred ceEEEEEE--eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCCce--eccc---c-----------cCc
Q 030112 58 LMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV--CLNV---L-----------RED 119 (183)
Q Consensus 58 ~~~w~~~i--gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~v--cl~~---l-----------~~~ 119 (183)
-..|.+.= ..+.+.|.+..-.+-|.+|..||..+|...+..|..... .+|.+ |-+. + ...
T Consensus 23 ~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~ 100 (122)
T PF14462_consen 23 GRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNP 100 (122)
T ss_pred CccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence 34576644 467778999999999999999999998776665532111 01222 2211 1 245
Q ss_pred ccCCc-cHHhHHHHHHHhhc
Q 030112 120 WKPVL-NINTIIYGLYHLFT 138 (183)
Q Consensus 120 W~p~~-~i~~iL~~i~~ll~ 138 (183)
|.|.. ++.+.|..|...|.
T Consensus 101 W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 101 WRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHh
Confidence 88874 68888887776653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=84.53 E-value=1.8 Score=36.45 Aligned_cols=88 Identities=17% Similarity=0.369 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112 28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 107 (183)
+....+|.+|+..+..+..+.+.+ ++++....+++.... ....++|.+|.+||.++|.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~---d~~ls~i~l~~~D~~-----R~H~l~l~l~~~yp~~~p~~~~~~P~------- 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQF---DDDLSTIKLKIFDSS-----RQHYLELKLPSNYPFEPPSCSLDLPI------- 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE----CCCSEEEEEEETTC-----EEEEEEEETTTTTTTSEEEECS-TTS-------
T ss_pred cHHHHHHHHHHHHhccccceEEec---CCCccEEEEEEEcCC-----ceEEEEEEECCCCCCCCceeeCCCCc-------
Confidence 556789999999996666666643 467888888883221 36889999999999999976433221
Q ss_pred CCceecccccCcccC-CccHHhHHHHHHHhh
Q 030112 108 EGNVCLNVLREDWKP-VLNINTIIYGLYHLF 137 (183)
Q Consensus 108 ~G~vcl~~l~~~W~p-~~~i~~iL~~i~~ll 137 (183)
.+...|.+ ..++.+++...+..+
T Consensus 163 -------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp --------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -------chhhhhcccccCHHHHHHHHHHHH
Confidence 11236877 667777766555443
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.31 E-value=6.1 Score=37.49 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhc-CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcE-EEEEEEeCCCCCCC-CCceeEecc
Q 030112 30 RELRLHKDITEL-NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGT-FVFSFEVPPIYPHD-APKVKCKTK 99 (183)
Q Consensus 30 ~~~RL~~E~~~l-~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~-f~~~i~fp~~YP~~-pP~v~f~t~ 99 (183)
..+-|.+|+.-| .+-+.+.++-.+ -.-..-.+++ +|-. +-.|-+ .++.|.||.+||.+ +|.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~~nV~fEkid--va~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKIRNVNFEKID--VADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhccccccceEeec--cccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 456788888888 566676665222 1224455666 4433 334444 47889999999995 799999855
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.92 E-value=4.1 Score=32.64 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=19.1
Q ss_pred EEEEEEEeCCCCCCCCCceeE
Q 030112 76 TFVFSFEVPPIYPHDAPKVKC 96 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f 96 (183)
.+.+.+.++++||..+|.+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 789999999999999999943
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=67.41 E-value=25 Score=30.19 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=32.6
Q ss_pred eEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe-ccccccC
Q 030112 59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK-TKVYHPN 104 (183)
Q Consensus 59 ~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpn 104 (183)
..+.+.| ||-|...+-+|.|...||..||-+.|. ..-|+|-
T Consensus 54 DRF~l~I-----Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 54 DRFKLLI-----PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ceEEEEe-----eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 3455555 788888999999999999999999997 3347774
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=48.66 E-value=28 Score=26.81 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=25.3
Q ss_pred ccccc---cCccCCCceecccccCcccCCccHHhHHHHHHH-hhcCCCC
Q 030112 98 TKVYH---PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYH-LFTEPNH 142 (183)
Q Consensus 98 t~i~H---pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~-ll~~p~~ 142 (183)
|+.|| +||+.+|.||+.... .|.......+..+.. +|.++..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCcc
Confidence 44565 488889999997643 344444444555544 4445543
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=38.68 E-value=41 Score=25.02 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.7
Q ss_pred CcEEEEEEEeCCCCC-CCCCceeEe
Q 030112 74 NGTFVFSFEVPPIYP-HDAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP-~~pP~v~f~ 97 (183)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999876
No 41
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=38.49 E-value=10 Score=36.27 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=0.0
Q ss_pred cEEEEEEEeCCCCCCCCCceeEecc
Q 030112 75 GTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
.+=.+.|.+|.|||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3456889999999999999877544
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=36.28 E-value=46 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.9
Q ss_pred CcEEEEEEEeCCCCCCCCCceeEe
Q 030112 74 NGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
.|.|.|+=.+|--||..+|.|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999887
No 43
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=35.10 E-value=37 Score=31.28 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEEEEeCCCCCC---CCCceeEecc
Q 030112 69 EGYYQNGTFVFSFEVPPIYPH---DAPKVKCKTK 99 (183)
Q Consensus 69 ~tpyegg~f~~~i~fp~~YP~---~pP~v~f~t~ 99 (183)
-+||.=|.|-+ +.+|++||+ +-|-++|.|+
T Consensus 247 ~GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 247 FGPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred cCCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 35777788876 567999999 6799999988
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=35.07 E-value=45 Score=28.67 Aligned_cols=23 Identities=26% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEEEeCCCCCCCCCceeEec
Q 030112 76 TFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 37788999999999999999986
No 45
>PF12884 TORC_N: Transducer of regulated CREB activity, N terminus; InterPro: IPR024783 This entry represents the N-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS) []. The coiled-coil structure interacts with the bZIP domain of CREB []. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions []. In addition to CREB-binding, the N-terminal domain plays a role in the tetramer formation of TORCs [], but the physiological function of the multimeric complex has not been clarified yet.; GO: 0008140 cAMP response element binding protein binding, 0051289 protein homotetramerization
Probab=35.03 E-value=6.8 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCC
Q 030112 158 PACFETNVRMALQGGYIGDEYFEPV 182 (183)
Q Consensus 158 ~~~f~~~~r~~~~~~~~~~~~~~~~ 182 (183)
|..|-+++.-+.++-+.+-+.|++|
T Consensus 2 PRKFSEKIALh~QKQaEetaaFE~i 26 (67)
T PF12884_consen 2 PRKFSEKIALHNQKQAEETAAFEEI 26 (67)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444443
No 46
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=34.65 E-value=1.4e+02 Score=20.15 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=28.1
Q ss_pred eEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 59 MNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 59 ~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..|.+-+ ++.+..-..-+=+++..+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 5799999 777654445566788888999877 77777766554
No 47
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=12 Score=29.49 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCceecccccCcccCCccHHhHHHHHHHhhcC
Q 030112 108 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTE 139 (183)
Q Consensus 108 ~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~ 139 (183)
.+.+|++++...|+|.+|++.-+.-++..+.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999988776655544443
No 48
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=32.46 E-value=26 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHHhhc
Q 030112 26 KQCARELRLHKDITEL 41 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l 41 (183)
..-+-+|||++|++-|
T Consensus 56 s~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 56 SVLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhCCC
Confidence 3445579999999988
No 49
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=31.81 E-value=45 Score=26.70 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCCCceeEeccccccCccC--CCceecccccCcc--cCCccHHhHHHHHHHhhcCCCCC
Q 030112 89 HDAPKVKCKTKVYHPNIDL--EGNVCLNVLREDW--KPVLNINTIIYGLYHLFTEPNHE 143 (183)
Q Consensus 89 ~~pP~v~f~t~i~HpnV~~--~G~vcl~~l~~~W--~p~~~i~~iL~~i~~ll~~p~~~ 143 (183)
..||.|-|-.+.|...|+- -|-|--.+.+.+| .|+-++.+-|+.|..+|-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 4799999999999999986 4655555666677 78889999999998888877543
No 50
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=31.55 E-value=2.2e+02 Score=26.54 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCC
Q 030112 28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDA 91 (183)
Q Consensus 28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~p 91 (183)
+..-.-|+.|+..|+..-.+.+.--...+|-....|+|..+.-| .+++..|.+||...
T Consensus 618 q~lp~vlqgElarLD~kF~v~ld~~~~~nN~I~liCklddk~lP------Pl~lsVP~~YPaq~ 675 (742)
T KOG4274|consen 618 QNLPEVLQGELARLDAKFEVDLDHQRHDNNHIILICKLDDKQLP------PLRLSVPTTYPAQN 675 (742)
T ss_pred hhhhHHHHHHHHhhccceeecCCcccccCCeeEEEEEecCCCCC------Ceeeeccccccccc
Confidence 33445789999999543222222111123422333333444444 48999999999864
No 51
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=30.24 E-value=2.1e+02 Score=21.99 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=26.3
Q ss_pred CceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 57 DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 57 n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
+.=...+.+ -|+-.|-- -...++|.| .||-..||.|.|..+
T Consensus 35 ~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 35 SFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred cCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 333455555 45555532 224556666 689999999999976
No 52
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.20 E-value=83 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.4
Q ss_pred CcEEEEEEEeCCCCC-----CCCCceeEe
Q 030112 74 NGTFVFSFEVPPIYP-----HDAPKVKCK 97 (183)
Q Consensus 74 gg~f~~~i~fp~~YP-----~~pP~v~f~ 97 (183)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 388999999999999 899999876
No 53
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=27.06 E-value=97 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=22.6
Q ss_pred cCccCCCceecccccCcccCC-ccHHhHHHHHHHhhcC
Q 030112 103 PNIDLEGNVCLNVLREDWKPV-LNINTIIYGLYHLFTE 139 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~-~~i~~iL~~i~~ll~~ 139 (183)
+||+.+|.||+.... .|. .++.+ +......|.+
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~ 172 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFS 172 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhC
Confidence 388899999998764 555 35555 6666665554
No 54
>PRK11700 hypothetical protein; Provisional
Probab=26.75 E-value=3.2e+02 Score=21.55 Aligned_cols=98 Identities=17% Similarity=0.343 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHhhc------CCCCC---ceEeccCCCCCceEEEEEE----eCCCCCC-CCcEEEEEEEeC--------
Q 030112 27 QCARELRLHKDITEL------NLPEA---CKISFPNGQDDLMNFEVSI----KPDEGYY-QNGTFVFSFEVP-------- 84 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l------~~~~~---~~~~~~~~~~n~~~w~~~i----gp~~tpy-egg~f~~~i~fp-------- 84 (183)
......|....+.+. +.-.| +-+.+.. .=..-.|.+.+ .|.+.-| .-|+=++++.+|
T Consensus 49 ~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~q-Pl~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~ 127 (187)
T PRK11700 49 QNETAERWRQGFLQCGELLSENIINGRPICLFELDQ-PLQVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDA 127 (187)
T ss_pred CHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCC-CceeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHH
Confidence 344566777777666 11122 2222211 22344576555 5655555 568888998877
Q ss_pred ------CCCCCCCCceeEe--cc------ccccCccC-CCceecccccCcccCCccHHhHHH
Q 030112 85 ------PIYPHDAPKVKCK--TK------VYHPNIDL-EGNVCLNVLREDWKPVLNINTIIY 131 (183)
Q Consensus 85 ------~~YP~~pP~v~f~--t~------i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~ 131 (183)
++.|..+|-|++. +| .-+|-|-- +|.+|+..- -++|++|+.
T Consensus 128 ~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H------P~slk~IV~ 183 (187)
T PRK11700 128 RALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH------PHSIKEIVA 183 (187)
T ss_pred HHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc------CccHHHHHH
Confidence 3345566666555 33 55777754 789998653 355666654
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=25.12 E-value=81 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.9
Q ss_pred cEEEEEEEeCCCCCCCCCceeEecc
Q 030112 75 GTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
-.+.+.+..++.||...|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3577888899999999999999877
No 56
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.40 E-value=53 Score=19.45 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhc
Q 030112 28 CARELRLHKDITEL 41 (183)
Q Consensus 28 ~~~~~RL~~E~~~l 41 (183)
..-.+||++|+.+|
T Consensus 18 teeNrRL~ke~~eL 31 (44)
T smart00340 18 TEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHH
Confidence 44578999999998
No 57
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=21.87 E-value=2.1e+02 Score=23.63 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=29.3
Q ss_pred CceEEEEEEeCCCCCCCCc----EEEEEEEe-----CCCCCCCCCceeEecccc
Q 030112 57 DLMNFEVSIKPDEGYYQNG----TFVFSFEV-----PPIYPHDAPKVKCKTKVY 101 (183)
Q Consensus 57 n~~~w~~~igp~~tpyegg----~f~~~i~f-----p~~YP~~pP~v~f~t~i~ 101 (183)
|..-|.+.....+|--..| .|+.++.+ .-|-||+||+|..+++-|
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 3444777664444433333 35566665 478999999999998855
No 58
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=21.10 E-value=1.9e+02 Score=19.60 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.7
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112 145 PLNHDAAELLRDSPACFETNVRMALQGG 172 (183)
Q Consensus 145 p~n~eaa~~~~~~~~~f~~~~r~~~~~~ 172 (183)
|-..+...++++||++|.+..++.+.+.
T Consensus 4 p~FD~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 4 PDFDELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3345677899999999998777665543
No 59
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=20.87 E-value=1.1e+02 Score=17.50 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred HhHHHHHHHhhcCCCCCCCccHHHHHHHH
Q 030112 127 NTIIYGLYHLFTEPNHEDPLNHDAAELLR 155 (183)
Q Consensus 127 ~~iL~~i~~ll~~p~~~~p~n~eaa~~~~ 155 (183)
..|+.++++.|++|+..+.+-..|.+.+.
T Consensus 4 ~~V~~G~KAal~NPnvSeeaK~~A~~~Le 32 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSEEAKQHAREKLE 32 (36)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Confidence 45778899999999988766666655443
No 60
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=20.81 E-value=1.2e+02 Score=27.82 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.2
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHhcC
Q 030112 147 NHDAAELLRDSPACFETNVRMALQGG 172 (183)
Q Consensus 147 n~eaa~~~~~~~~~f~~~~r~~~~~~ 172 (183)
-+|+.++..+||+.|.+.+++++++.
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rh 296 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARH 296 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 37788888899999999999997764
No 61
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=20.80 E-value=85 Score=19.83 Aligned_cols=18 Identities=22% Similarity=0.671 Sum_probs=11.5
Q ss_pred cccCCccHHhHHHHHHHh
Q 030112 119 DWKPVLNINTIIYGLYHL 136 (183)
Q Consensus 119 ~W~p~~~i~~iL~~i~~l 136 (183)
+|.|.++|+++|......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 799999999999876543
No 62
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.42 E-value=1.9e+02 Score=19.96 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=18.4
Q ss_pred CCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 72 yegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
-||..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35666777777788888 488877754
No 63
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=20.11 E-value=1.5e+02 Score=18.62 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.8
Q ss_pred CccHHHHHHHHhCHHHHHHHHH
Q 030112 145 PLNHDAAELLRDSPACFETNVR 166 (183)
Q Consensus 145 p~n~eaa~~~~~~~~~f~~~~r 166 (183)
.-|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3589999999999999998654
Done!