Query 030112
Match_columns 183
No_of_seqs 130 out of 1159
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o2u_A NEDD8-conjugating enzym 100.0 5.2E-52 1.8E-56 325.6 18.1 180 1-183 3-188 (190)
2 2nvu_C NEDD8-conjugating enzym 100.0 3.2E-52 1.1E-56 324.3 14.9 177 1-183 3-179 (180)
3 1y8x_A Ubiquitin-conjugating e 100.0 1.5E-49 5E-54 304.2 17.6 157 26-183 3-159 (160)
4 1zdn_A Ubiquitin-conjugating e 100.0 3.4E-48 1.2E-52 296.1 15.6 150 22-173 6-158 (158)
5 4gpr_A Ubiquitin-conjugating e 100.0 1.1E-47 3.7E-52 291.3 17.4 146 27-174 2-150 (151)
6 2aak_A UBC1, ubiquitin conjuga 100.0 1.5E-47 5.2E-52 290.7 16.5 148 26-175 1-151 (152)
7 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.2E-48 3.2E-52 296.5 14.5 148 27-176 2-152 (169)
8 2ayv_A Ubiquitin-conjugating e 100.0 2.6E-47 9E-52 293.1 16.6 146 26-173 18-166 (166)
9 2c2v_B Ubiquitin-conjugating e 100.0 6E-48 2.1E-52 293.6 12.7 145 29-175 5-152 (154)
10 2ucz_A UBC7, ubiquitin conjuga 100.0 3.5E-47 1.2E-51 292.4 16.6 148 26-174 1-164 (165)
11 2c4o_A Ubiquitin-conjugating e 100.0 7.8E-47 2.7E-51 290.3 17.8 146 26-173 16-164 (165)
12 1z2u_A Ubiquitin-conjugating e 100.0 4.7E-47 1.6E-51 287.4 16.2 144 28-173 3-149 (150)
13 3h8k_A Ubiquitin-conjugating e 100.0 6E-47 2E-51 290.8 16.9 146 28-174 2-163 (164)
14 2e2c_A Ubiquitin conjugating e 100.0 3.4E-47 1.2E-51 289.9 15.0 147 25-174 5-154 (156)
15 1yh2_A HSPC150 protein similar 100.0 1.4E-46 4.8E-51 290.0 17.8 148 27-176 2-156 (169)
16 3fn1_B NEDD8-conjugating enzym 100.0 9.9E-47 3.4E-51 290.4 16.2 152 21-173 6-166 (167)
17 2r0j_A Ubiquitin carrier prote 100.0 1.1E-46 3.8E-51 285.2 15.4 143 31-175 3-148 (149)
18 3rcz_B SUMO-conjugating enzyme 100.0 1.6E-46 5.3E-51 288.1 16.4 148 25-173 6-162 (163)
19 2bep_A Ubiquitin-conjugating e 100.0 1.6E-46 5.5E-51 287.1 16.3 148 25-174 4-158 (159)
20 1i7k_A Ubiquitin-conjugating e 100.0 1.3E-46 4.3E-51 292.4 15.0 148 26-176 27-177 (179)
21 1fxt_A Ubiquitin-conjugating e 100.0 6.8E-47 2.3E-51 286.3 12.8 143 30-173 2-148 (149)
22 1jat_A Ubiquitin-conjugating e 100.0 4.3E-47 1.5E-51 289.2 11.6 146 29-176 5-153 (155)
23 2gjd_A Ubiquitin-conjugating e 100.0 3.5E-46 1.2E-50 284.7 15.8 146 27-173 2-156 (157)
24 3bzh_A Ubiquitin-conjugating e 100.0 4.2E-46 1.4E-50 292.7 16.3 145 27-173 46-193 (194)
25 2grr_A Ubiquitin-conjugating e 100.0 6.5E-46 2.2E-50 284.2 16.3 148 26-174 4-160 (161)
26 2f4z_A Tgtwinscan_2721 - E2 do 100.0 5.5E-46 1.9E-50 291.8 15.4 147 26-174 29-192 (193)
27 2pwq_A Ubiquitin conjugating e 100.0 5.8E-46 2E-50 296.1 15.4 151 26-178 20-174 (216)
28 1wzv_A Ubiquitin-conjugating e 100.0 1.2E-45 4E-50 281.2 14.8 147 29-176 4-153 (155)
29 1yrv_A Ubiquitin-conjugating l 100.0 1.1E-45 3.7E-50 284.9 14.7 146 23-171 17-168 (169)
30 3k9o_A Ubiquitin-conjugating e 100.0 1.6E-45 5.6E-50 291.3 16.0 150 26-177 2-158 (201)
31 3rz3_A Ubiquitin-conjugating e 100.0 1.5E-45 5.2E-50 287.5 15.4 146 27-173 5-172 (183)
32 1tte_A Ubiquitin-conjugating e 100.0 9E-46 3.1E-50 294.8 12.4 148 29-177 2-153 (215)
33 2awf_A Ubiquitin-conjugating e 100.0 1.1E-45 3.9E-50 285.6 12.5 143 25-168 13-172 (172)
34 3e46_A Ubiquitin-conjugating e 100.0 5.4E-45 1.8E-49 296.5 16.8 154 22-177 50-210 (253)
35 1c4z_D UBCH7, ubiquitin conjug 100.0 3.3E-45 1.1E-49 278.4 13.2 148 29-177 2-152 (154)
36 2onu_A Ubiquitin-conjugating e 100.0 5E-46 1.7E-50 282.4 8.3 146 29-177 2-150 (152)
37 2y9m_A Ubiquitin-conjugating e 100.0 8.5E-45 2.9E-49 280.7 14.3 149 26-174 3-168 (172)
38 2z5d_A Ubiquitin-conjugating e 100.0 9.9E-45 3.4E-49 281.5 10.9 143 29-175 25-170 (179)
39 1yf9_A Ubiquitin carrier prote 100.0 4E-44 1.4E-48 276.6 10.9 142 29-174 12-156 (171)
40 4ddg_A Ubiquitin-conjugating e 100.0 4.4E-43 1.5E-47 302.5 15.7 152 28-181 2-156 (399)
41 4ds2_A Ubiquitin-conjugating e 100.0 4.8E-42 1.6E-46 264.2 9.4 141 24-166 3-163 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 1.8E-40 6.2E-45 252.6 8.8 133 24-157 16-156 (156)
43 2a4d_A Ubiquitin-conjugating e 100.0 8.1E-39 2.8E-43 244.2 12.1 127 24-151 20-156 (160)
44 3ceg_A Baculoviral IAP repeat- 100.0 7E-39 2.4E-43 267.5 12.4 150 24-174 71-243 (323)
45 2fo3_A Ubiquitin-conjugating e 100.0 1.1E-38 3.8E-43 234.7 11.8 115 27-143 4-122 (125)
46 2h2y_A Ubiquitin-conjugating e 100.0 4.9E-38 1.7E-42 234.3 13.5 116 25-142 16-135 (136)
47 1jat_B Ubiquitin-conjugating e 100.0 2.2E-39 7.6E-44 242.1 5.1 126 28-154 5-138 (138)
48 2a7l_A Hypothetical ubiquitin- 100.0 9.7E-38 3.3E-42 232.5 11.8 119 19-138 12-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 4.1E-38 1.4E-42 242.6 8.2 124 27-151 33-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 1.2E-35 3.9E-40 232.2 13.3 121 21-145 6-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.9E-36 6.4E-41 236.5 2.5 140 22-171 20-179 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 3.8E-26 1.3E-30 172.7 2.4 102 24-131 27-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 5.4E-19 1.9E-23 134.4 9.0 111 32-144 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.8E-18 6E-23 128.1 0.8 94 22-124 27-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 5.1E-14 1.7E-18 105.2 7.6 80 55-139 50-138 (146)
56 2ebm_A RWD domain-containing p 97.1 0.002 6.8E-08 46.1 7.5 69 28-98 9-78 (128)
57 2yz0_A Serine/threonine-protei 96.0 0.055 1.9E-06 38.9 9.2 72 27-98 8-85 (138)
58 1tt5_E Ubiquitin-conjugating e 95.3 0.0097 3.3E-07 30.7 1.9 18 1-18 1-18 (26)
59 2ebk_A RWD domain-containing p 95.3 0.14 4.8E-06 36.2 8.9 40 58-97 39-78 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 95.3 0.049 1.7E-06 39.1 6.5 71 27-97 8-85 (137)
61 2day_A Ring finger protein 25; 94.5 0.042 1.4E-06 39.0 4.4 66 33-98 12-82 (128)
62 2daw_A RWD domain containing p 94.3 0.16 5.5E-06 37.4 7.4 65 76-160 76-140 (154)
63 2dax_A Protein C21ORF6; RWD do 93.3 0.36 1.2E-05 35.2 7.5 24 76-99 74-97 (152)
64 3zqs_A E3 ubiquitin-protein li 92.8 0.59 2E-05 35.6 8.2 82 33-138 5-87 (186)
65 2cwb_A Chimera of immunoglobul 48.5 3.7 0.00013 28.4 0.0 32 140-171 21-52 (108)
66 2rf4_B DNA-directed RNA polyme 28.2 34 0.0012 22.5 2.2 16 26-41 59-74 (87)
67 3rls_A YAF9, protein AF-9 homo 23.0 1.8E+02 0.006 21.6 5.5 45 56-102 30-75 (175)
68 2jrw_A Cyclic extended PEP.1; 21.3 35 0.0012 16.7 0.9 16 89-104 5-20 (26)
69 2f4m_B UV excision repair prot 20.2 95 0.0032 18.9 3.0 20 146-165 37-56 (61)
No 1
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=5.2e-52 Score=325.62 Aligned_cols=180 Identities=41% Similarity=0.834 Sum_probs=169.2
Q ss_pred CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEec---cCCCCCce---EEEEEEeCCCCCCCC
Q 030112 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISF---PNGQDDLM---NFEVSIKPDEGYYQN 74 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~---~~~~~n~~---~w~~~igp~~tpyeg 74 (183)
||++++++++++++..+++ ++++..+++.+||++||++++.++++.+.+ ++ ++|++ +|+++|+|++|||+|
T Consensus 3 m~~l~~~~~~~~~~~~~~~--~~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~-~~nl~~~~~w~~~I~p~~tpyeg 79 (190)
T 3o2u_A 3 MLKLRQLQKKKQKENENSS--SIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNY 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SSSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTT-CCCTTSCCEEEEEECCSSSTTTT
T ss_pred hHHHHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHhccCCCCEEEEecCCCC-CccCCcCCeEEEEEcCCCCCCCC
Confidence 7889999999988877653 566788899999999999998778888864 66 78999 999999888899999
Q ss_pred cEEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHH
Q 030112 75 GTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL 154 (183)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~ 154 (183)
|+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.|||++|
T Consensus 80 g~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~ 159 (190)
T 3o2u_A 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL 159 (190)
T ss_dssp CCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHHhcCCCCCcccCCCC
Q 030112 155 RDSPACFETNVRMALQGGYIGDEYFEPVM 183 (183)
Q Consensus 155 ~~~~~~f~~~~r~~~~~~~~~~~~~~~~~ 183 (183)
++|+++|.++||+|+++++..+..|++++
T Consensus 160 ~~d~~~f~~~ar~~~~~~~~~~~~~~~~~ 188 (190)
T 3o2u_A 160 CEGEKEFAEAVRLTMSGGSIEHVKYDNIV 188 (190)
T ss_dssp HTCHHHHHHHHHHHHBTCEETTEECCBCC
T ss_pred HHCHHHHHHHHHHHHHhcCCCCccccccc
Confidence 99999999999999999999999999986
No 2
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-52 Score=324.31 Aligned_cols=177 Identities=61% Similarity=1.092 Sum_probs=162.9
Q ss_pred CccchhhhHhhHHHHhhcCCCCCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEE
Q 030112 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~ 80 (183)
||.++++++++++++.+ +.++.+.+.+||++|+++++.++++.+.+++ ++|+++|+++|||++|||+||+|+++
T Consensus 3 m~~~~~~~~~~~~~~~~-----~~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~-~~nl~~W~~~igP~~tpYegg~f~~~ 76 (180)
T 2nvu_C 3 MIKLFSLKQQKKEEEKG-----SSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFS 76 (180)
T ss_dssp --CCCCCCCSCCCCCCS-----CCCSCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCCSGGGTTBCEEEE
T ss_pred hHHHHHHHHHHHhhhhc-----ccCCccHHHHHHHHHHHhcCCCCCeEEEecc-cccccceEEEECCCCCCCCCCEEEEE
Confidence 78899997777544432 2456788999999999999888888887666 78999999999999999999999999
Q ss_pred EEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHH
Q 030112 81 FEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAC 160 (183)
Q Consensus 81 i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~ 160 (183)
|.||++||++||+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++
T Consensus 77 i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~ 156 (180)
T 2nvu_C 77 FKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRL 156 (180)
T ss_dssp EECCTTTTTSCCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHH
T ss_pred EeCCCcCCCCCCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCC
Q 030112 161 FETNVRMALQGGYIGDEYFEPVM 183 (183)
Q Consensus 161 f~~~~r~~~~~~~~~~~~~~~~~ 183 (183)
|.++||+++++++.++.+|++++
T Consensus 157 f~~~v~~~v~~~~~~~~~~~~~~ 179 (180)
T 2nvu_C 157 FEQNVQRSMRGGYIGSTYFERCL 179 (180)
T ss_dssp HHHHHHHHHHSEEETTEEECCCB
T ss_pred HHHHHHHHHhhCCcCccccchhc
Confidence 99999999999999999999985
No 3
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-49 Score=304.17 Aligned_cols=157 Identities=64% Similarity=1.148 Sum_probs=150.7
Q ss_pred cchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 26 KQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
+++.+.+||++|++++++++++.+.+++ ++|+++|+++|||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 3 MASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp SCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEecc-CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 4567899999999999888888887666 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcccCCCC
Q 030112 106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEPVM 183 (183)
Q Consensus 106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~~~~~~ 183 (183)
+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+++++++..+.+|++++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~~~~~~~~~~~ 159 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 159 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEEETTEEECCCB
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCccCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-48 Score=296.06 Aligned_cols=150 Identities=28% Similarity=0.504 Sum_probs=141.1
Q ss_pred CCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 22 TPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
++.+++..+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 83 (158)
T 1zdn_A 6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83 (158)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEecc
Confidence 45567888999999999999 667888875 55 78999999999 999999999999999999999999999999999
Q ss_pred cccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 99 KVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 99 ~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
++|||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++
T Consensus 84 ~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 84 KIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp CCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875
No 5
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.1e-47 Score=291.30 Aligned_cols=146 Identities=34% Similarity=0.680 Sum_probs=139.2
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
++.+.+||++|++++ +.+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 79 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAG-PV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHP 79 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccc
Confidence 467899999999999 677888876 55 68999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++.
T Consensus 80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 80 NINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred eECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 6
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.5e-47 Score=290.74 Aligned_cols=148 Identities=26% Similarity=0.617 Sum_probs=139.1
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|++.+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGA-PQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence 3457899999999999 567787775 55 78999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~ 175 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus 79 Pnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 79 PNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 7
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.2e-48 Score=296.48 Aligned_cols=148 Identities=28% Similarity=0.628 Sum_probs=139.7
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
++.+.+||++|+++| +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 2 s~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 79 (169)
T 1ayz_A 2 STPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP 79 (169)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEE-ec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence 457899999999999 667788775 55 78999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
||+.+|.||+++|.+.|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++++..+
T Consensus 80 NI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~ 152 (169)
T 1ayz_A 80 NVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD 152 (169)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988543
No 8
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-47 Score=293.14 Aligned_cols=146 Identities=31% Similarity=0.678 Sum_probs=137.8
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..+.+.+||++|++++ +.++++.+. +. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 95 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAG-PV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence 3456889999999999 667888875 55 68999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++
T Consensus 96 PNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 96 PNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6e-48 Score=293.56 Aligned_cols=145 Identities=32% Similarity=0.585 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
++.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence 4579999999999 667888875 55 67999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112 106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175 (183)
Q Consensus 106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~ 175 (183)
+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp CTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998864
No 10
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-47 Score=292.35 Aligned_cols=148 Identities=29% Similarity=0.571 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
|++.+.+||++|+++| +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 3467899999999999 567788876 44357999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccc-------------cCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 030112 103 PNIDLEGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMAL 169 (183)
Q Consensus 103 pnV~~~G~vcl~~l-------------~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~ 169 (183)
|||+.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~ 159 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999999999999 57899999999999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 030112 170 QGGYI 174 (183)
Q Consensus 170 ~~~~~ 174 (183)
+++..
T Consensus 160 ~~~~~ 164 (165)
T 2ucz_A 160 LKSLG 164 (165)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 98753
No 11
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=7.8e-47 Score=290.32 Aligned_cols=146 Identities=31% Similarity=0.690 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
..+.+.+||++|++++ +.++++.+. +. ++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H 93 (165)
T 2c4o_A 16 RGSMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 93 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence 4567899999999999 567788775 55 68999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||.+|++|+++|+++||+|+.+++
T Consensus 94 PnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a 164 (165)
T 2c4o_A 94 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164 (165)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=4.7e-47 Score=287.45 Aligned_cols=144 Identities=32% Similarity=0.680 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112 28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 104 (183)
..+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 45789999999999 667788775 55 58999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 149 (150)
T 1z2u_A 81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149 (150)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 13
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=6e-47 Score=290.77 Aligned_cols=146 Identities=28% Similarity=0.552 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112 28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 104 (183)
+++.+||++|++++ +.++++.+. +..++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAG-PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 46899999999999 667888885 55356999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112 105 IDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG 171 (183)
Q Consensus 105 V~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 171 (183)
|+.+|.||+++|. ++|+|++||++||.+|+++|.+|++++|+|.|||.+|++|+++|+++||+|+++
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999999996 789999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 030112 172 GYI 174 (183)
Q Consensus 172 ~~~ 174 (183)
+..
T Consensus 161 s~~ 163 (164)
T 3h8k_A 161 SLG 163 (164)
T ss_dssp HHT
T ss_pred hhc
Confidence 753
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-47 Score=289.94 Aligned_cols=147 Identities=27% Similarity=0.574 Sum_probs=137.9
Q ss_pred CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112 25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY 101 (183)
Q Consensus 25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 101 (183)
.+++.+.+||++|++++ +.++++.+. +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (156)
T 2e2c_A 5 KERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW 82 (156)
T ss_dssp CSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence 34567889999999999 467787775 55 67999999999 999999999999999999999999999999999999
Q ss_pred ccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 102 HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 102 HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++| +|+++|+++||+|+++++.
T Consensus 83 HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 83 HPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred cCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999 8999999999999998764
No 15
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-46 Score=289.98 Aligned_cols=148 Identities=29% Similarity=0.566 Sum_probs=140.1
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
++++.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 79 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHP 79 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccc
Confidence 467899999999999 667788876 55 68999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceeccccc----CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 104 NIDLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 104 nV~~~G~vcl~~l~----~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
||+.+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++..+
T Consensus 80 Nv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 156 (169)
T 1yh2_A 80 NIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQK 156 (169)
T ss_dssp TBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC
T ss_pred cCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 99999999999998 89999999999999999999999999999999999999999999999999999998653
No 16
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=9.9e-47 Score=290.36 Aligned_cols=152 Identities=41% Similarity=0.774 Sum_probs=141.3
Q ss_pred CCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 21 GTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 21 ~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+++.+..+.+.+||++|++++ +.++++.+..++ ++|++.|+++|||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 84 (167)
T 3fn1_B 6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT 84 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSS-SSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence 456678899999999999999 467788887444 78999999999999999999999999999999999999999999
Q ss_pred cccccCccCCCceecccccC------cccCCccHHhHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112 99 KVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTE-PNHEDPLNHDAAELLRDSPACFETNVRMALQG 171 (183)
Q Consensus 99 ~i~HpnV~~~G~vcl~~l~~------~W~p~~~i~~iL~~i~~ll~~-p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 171 (183)
+||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.|||.+|++|+++|.++||+|+++
T Consensus 85 ~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 164 (167)
T 3fn1_B 85 KIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164 (167)
T ss_dssp CCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999975 799999999999999999999 69999999999999999999999999999998
Q ss_pred CC
Q 030112 172 GY 173 (183)
Q Consensus 172 ~~ 173 (183)
++
T Consensus 165 ~A 166 (167)
T 3fn1_B 165 YA 166 (167)
T ss_dssp HC
T ss_pred hc
Confidence 76
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.1e-46 Score=285.15 Aligned_cols=143 Identities=31% Similarity=0.588 Sum_probs=136.3
Q ss_pred HHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112 31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 31 ~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 107 (183)
.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 80 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAV-PV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 80 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC
Confidence 58999999999 677788875 55 68999999999 999999999999999999999999999999999999999999
Q ss_pred CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112 108 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175 (183)
Q Consensus 108 ~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~ 175 (183)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++..
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998754
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-46 Score=288.07 Aligned_cols=148 Identities=27% Similarity=0.578 Sum_probs=136.6
Q ss_pred CcchHHHHHHHHHHhhc--CCCCCceEeccCCC-C---CceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 25 KKQCARELRLHKDITEL--NLPEACKISFPNGQ-D---DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~-~---n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
..+.+|.+||++|++++ ++++++.+. +... + |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~-p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~ 84 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAK-PCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT 84 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEE-EccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence 45788999999999999 778888875 4412 2 899999999 99999999999999999999999999999999
Q ss_pred ccccccCccCCCceecccccCc--ccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 98 TKVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 98 t~i~HpnV~~~G~vcl~~l~~~--W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
|+||||||+.+|.||+++|... |+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++
T Consensus 85 t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 85 PPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred CCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999754 999999999999999999999999999999999999999999999999999986
No 19
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.6e-46 Score=287.06 Aligned_cols=148 Identities=22% Similarity=0.504 Sum_probs=138.6
Q ss_pred CcchHHHHHHHHHHhhcC-----CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 25 KKQCARELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 25 ~~~~~~~~RL~~E~~~l~-----~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.|++.+.+||++|+++|. .++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 81 (159)
T 2bep_A 4 AMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 81 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC
Confidence 356678999999999993 26677775 55 57999999999 999999999999999999999999999999999
Q ss_pred cccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 99 KVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 99 ~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
+||||||+. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++.
T Consensus 82 ~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 82 KIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp CCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 999999996 9999999999999999999999999999999999999999999999999999999999999999875
No 20
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-46 Score=292.36 Aligned_cols=148 Identities=30% Similarity=0.561 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
+++.+.+||++||++| +.++++.+. +. .+|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 104 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH 104 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence 5677899999999999 557788775 55 67999999999 9999999999999999999999999999999999999
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++| +|+++|.++|+++++++..+.
T Consensus 105 PNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 105 PNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred CccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999987654
No 21
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=6.8e-47 Score=286.31 Aligned_cols=143 Identities=27% Similarity=0.545 Sum_probs=135.5
Q ss_pred HHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 30 RELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 30 ~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
+.+||++|++++ +.++++.+. +...+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~-~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEE-ESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 469999999999 667888886 55345999999999 99999999999999999999999999999999999999999
Q ss_pred C-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 107 L-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 107 ~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
. +|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999876
No 22
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.3e-47 Score=289.15 Aligned_cols=146 Identities=33% Similarity=0.585 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
.+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 3569999999999 667888875 55 68999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 106 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 106 ~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+++++...
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988654
No 23
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.5e-46 Score=284.65 Aligned_cols=146 Identities=27% Similarity=0.521 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
++.+.+||++|++++ +.++++.+. +. +.+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 s~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 2 SSLCLQRLQEERKKWRKDHPFGFYAK-PVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp -CHHHHHHHHHHHHHHHCCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 457889999999999 677888775 33 125899999999 9999999999999999999999999999999999
Q ss_pred ccccCccCCCceecccccC--cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 100 VYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 100 i~HpnV~~~G~vcl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
||||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++++
T Consensus 81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 156 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999999999999999987 7999999999999999999999999999999999999999999999999999886
No 24
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=4.2e-46 Score=292.74 Aligned_cols=145 Identities=27% Similarity=0.590 Sum_probs=138.4
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
++.+.+||++||++| +.++++.+. +. .+|+++|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 46 ~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 123 (194)
T 3bzh_A 46 LSTSAKRIQKELADITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC 123 (194)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred ccHHHHHHHHHHHHHHhCCCCCceee-cc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccc
Confidence 477899999999999 667788875 55 68999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 030112 104 NIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGY 173 (183)
Q Consensus 104 nV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~ 173 (183)
||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+.+++
T Consensus 124 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya 193 (194)
T 3bzh_A 124 NINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193 (194)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred eECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
No 25
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.5e-46 Score=284.23 Aligned_cols=148 Identities=28% Similarity=0.500 Sum_probs=138.3
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccC----CCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPN----GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~----~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
|++.+.+||++|+++| +.++++.+. +. +.+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~-p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 82 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAV-PTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP 82 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEE-EEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEE-eccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence 5678899999999999 667787775 32 236899999999 999999999999999999999999999999999
Q ss_pred cccccCccCCCceecccccC--cccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 99 KVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 99 ~i~HpnV~~~G~vcl~~l~~--~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
++|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.|||.+|++|+++|.++||+++++++.
T Consensus 83 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 83 PLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999976 79999999999999999999999999999999999999999999999999999875
No 26
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-46 Score=291.79 Aligned_cols=147 Identities=24% Similarity=0.505 Sum_probs=133.9
Q ss_pred cchHHHHHHHHHHhhc--CCC-------------CCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCC
Q 030112 26 KQCARELRLHKDITEL--NLP-------------EACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~-------------~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~ 89 (183)
....+.+||++|+++| +.+ .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||+
T Consensus 29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 106 (193)
T 2f4z_A 29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY 106 (193)
T ss_dssp ---CHHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-Ec-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence 4556889999999999 333 577775 44 57999999999 999999999999999999999999
Q ss_pred CCCceeEeccccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 030112 90 DAPKVKCKTKVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMA 168 (183)
Q Consensus 90 ~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~ 168 (183)
+||+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|
T Consensus 107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~ 186 (193)
T 2f4z_A 107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW 186 (193)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 999999999999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC
Q 030112 169 LQGGYI 174 (183)
Q Consensus 169 ~~~~~~ 174 (183)
+++++.
T Consensus 187 t~~ya~ 192 (193)
T 2f4z_A 187 TETFAK 192 (193)
T ss_dssp HHHHCC
T ss_pred HHHHcc
Confidence 999874
No 27
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=5.8e-46 Score=296.14 Aligned_cols=151 Identities=26% Similarity=0.556 Sum_probs=141.0
Q ss_pred cchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 26 KQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
+.+.+.+||++|++++ +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAH-IK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 4677899999999999 667788876 55 67999999999 9999999999999999999999999999999999999
Q ss_pred cCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcc
Q 030112 103 PNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEY 178 (183)
Q Consensus 103 pnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~ 178 (183)
|||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+.+++.....
T Consensus 98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~ 174 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKE 174 (216)
T ss_dssp TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC--
T ss_pred CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcc
Confidence 99995 89999999999999999999999999999999999999999999999999999999999999999976553
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.2e-45 Score=281.18 Aligned_cols=147 Identities=28% Similarity=0.555 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
.+.+||++|++++ +.++++.+..++ ++|+++|+++|.|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~-~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSD-DANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEEC-SSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecC-CCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 4789999999999 567787774455 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccc-cCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCC
Q 030112 107 LEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGD 176 (183)
Q Consensus 107 ~~G~vcl~~l-~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~ 176 (183)
.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+++.+++...
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999 899999999999999999999999999999999999999999999999999999988644
No 29
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-45 Score=284.87 Aligned_cols=146 Identities=25% Similarity=0.441 Sum_probs=136.0
Q ss_pred CCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 23 PVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 23 ~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
...|++.+.+||++|+++| +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred cCccChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence 3457778999999999999 567788775 66 68999999999 9999999999999999999999999999999999
Q ss_pred ccccCc-cCCCceeccccc--CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112 100 VYHPNI-DLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQG 171 (183)
Q Consensus 100 i~HpnV-~~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 171 (183)
|||||| +.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|+++|+++ |++|++
T Consensus 95 i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 95 PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999999 779999999998 89999999999999999999999999999999999999999999998 998864
No 30
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.6e-45 Score=291.25 Aligned_cols=150 Identities=22% Similarity=0.493 Sum_probs=138.5
Q ss_pred cchHHHHHHHHHHhhcCC-----CCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecc
Q 030112 26 KQCARELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l~~-----~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
|++.+.+||++|++++.. +.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 455689999999999932 4677775 55 67999999999 9999999999999999999999999999999999
Q ss_pred ccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112 100 VYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE 177 (183)
Q Consensus 100 i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~ 177 (183)
||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+|+....
T Consensus 80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~ 158 (201)
T 3k9o_A 80 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV 158 (201)
T ss_dssp CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
T ss_pred cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence 99999996 9999999999999999999999999999999999999999999999999999999999999999986643
No 31
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.5e-45 Score=287.48 Aligned_cols=146 Identities=31% Similarity=0.581 Sum_probs=136.8
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccccc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHP 103 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 103 (183)
++++.+||++||+++ +.++++.+..++ ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus 5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~-~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 83 (183)
T 3rz3_A 5 SPSSQKALLLELKGLQEEPVEGFRVTLVD-EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP 83 (183)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEECT-TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEecC-ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence 457899999999999 677888886455 78999999999 99999999999999999999999999999999999999
Q ss_pred CccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHh------CHHHHHHH
Q 030112 104 NIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD------SPACFETN 164 (183)
Q Consensus 104 nV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~------~~~~f~~~ 164 (183)
||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.|||.+|++ |+++|+++
T Consensus 84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~ 163 (183)
T 3rz3_A 84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDI 163 (183)
T ss_dssp TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHH
Confidence 99999999999996 789999999999999999999999999999999999999 78999999
Q ss_pred HHHHHhcCC
Q 030112 165 VRMALQGGY 173 (183)
Q Consensus 165 ~r~~~~~~~ 173 (183)
||+++.++.
T Consensus 164 v~~~v~~s~ 172 (183)
T 3rz3_A 164 IRKQVLGTK 172 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 32
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=9e-46 Score=294.84 Aligned_cols=148 Identities=27% Similarity=0.528 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNI 105 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV 105 (183)
++.+||++|++++ +.++++.+. +...+++++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~-p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEEC-CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 4679999999999 667788885 55345678999999 9999999999999999999999999999999999999999
Q ss_pred cC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112 106 DL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE 177 (183)
Q Consensus 106 ~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~ 177 (183)
+. +|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+.+++...+
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~ 153 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETS 153 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCS
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCC
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999996543
No 33
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.1e-45 Score=285.58 Aligned_cols=143 Identities=31% Similarity=0.586 Sum_probs=106.8
Q ss_pred CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEecccc
Q 030112 25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVY 101 (183)
Q Consensus 25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 101 (183)
..++.+.+||++|+++| +.++++.+. +..++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~-p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~ 91 (172)
T 2awf_A 13 GLVPRGSLLLRRQLAELNKNPVEGFSAG-LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 91 (172)
T ss_dssp CCCCTTHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence 35678899999999999 677888876 44357999999999 999999999999999999999999999999999999
Q ss_pred ccCccCCCceeccccc-------------CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHH-HHHHHHHH
Q 030112 102 HPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPA-CFETNVRM 167 (183)
Q Consensus 102 HpnV~~~G~vcl~~l~-------------~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~-~f~~~~r~ 167 (183)
||||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.|||++|++|++ +|+++||+
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~ 171 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence 9999999999999996 689999999999999999999999999999999999999999 99999998
Q ss_pred H
Q 030112 168 A 168 (183)
Q Consensus 168 ~ 168 (183)
|
T Consensus 172 ~ 172 (172)
T 2awf_A 172 C 172 (172)
T ss_dssp -
T ss_pred C
Confidence 6
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.4e-45 Score=296.45 Aligned_cols=154 Identities=21% Similarity=0.492 Sum_probs=141.9
Q ss_pred CCCCcchHHHHHHHHHHhhc--C---CCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCcee
Q 030112 22 TPVKKQCARELRLHKDITEL--N---LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVK 95 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l--~---~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 95 (183)
++..+++.+.+||++||++| + .+.++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+
T Consensus 50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 127 (253)
T 3e46_A 50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR 127 (253)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeee
Confidence 34456788999999999999 2 25677775 55 68999999999 999999999999999999999999999999
Q ss_pred EeccccccCccC-CCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 96 CKTKVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 96 f~t~i~HpnV~~-~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+|+.
T Consensus 128 F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~ 207 (253)
T 3e46_A 128 FITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 207 (253)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred ecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 999999999996 9999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCc
Q 030112 175 GDE 177 (183)
Q Consensus 175 ~~~ 177 (183)
...
T Consensus 208 ~~~ 210 (253)
T 3e46_A 208 APV 210 (253)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.3e-45 Score=278.44 Aligned_cols=148 Identities=32% Similarity=0.519 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCcc
Q 030112 29 ARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNID 106 (183)
Q Consensus 29 ~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~ 106 (183)
++.+||++|++++ +.++++.+. +..++|+++|+++|+|++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 80 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEe-eCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence 3568999999999 445666653 4337899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112 107 LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE 177 (183)
Q Consensus 107 ~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~ 177 (183)
.+|.||+++|. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++.+++....
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~~ 152 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-----
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccCC
Confidence 99999999996 789999999999999999999999999999999999999999999999999999986543
No 36
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=5e-46 Score=282.36 Aligned_cols=146 Identities=29% Similarity=0.515 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112 29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 107 (183)
++.+||++|++++.. .++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 sa~~Rl~kEl~~l~~-~~~~v~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIM-AGYDLE-LN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHH-HTCCEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCc-CCCEEE-Ec-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 356899999999943 467775 44 68999999999 999999999999999999999999999999999999999996
Q ss_pred -CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCc
Q 030112 108 -EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDE 177 (183)
Q Consensus 108 -~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~ 177 (183)
+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.|||++|++|+++|+++||+++.+++...+
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~ 150 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL 150 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999 689999999999999999999999999999999999999987554
No 37
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=8.5e-45 Score=280.71 Aligned_cols=149 Identities=26% Similarity=0.470 Sum_probs=135.0
Q ss_pred cchHHHHHHHHHHhhcCC----C-----CC---ceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 030112 26 KQCARELRLHKDITELNL----P-----EA---CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAP 92 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l~~----~-----~~---~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP 92 (183)
|++.+.+||++|+++++. + +. +....+..++|+++|+++| ||++|||+||+|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 567899999999999942 2 33 2223463378999999999 999999999999999999999999999
Q ss_pred ceeEec-cccccCcc-CCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHHHH
Q 030112 93 KVKCKT-KVYHPNID-LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRD-SPACFETNVRMA 168 (183)
Q Consensus 93 ~v~f~t-~i~HpnV~-~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~-~~~~f~~~~r~~ 168 (183)
+|+|.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++ |+++|.++||+|
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999996 69999999998 899999999999999999999999999999999999999 999999999999
Q ss_pred HhcCCC
Q 030112 169 LQGGYI 174 (183)
Q Consensus 169 ~~~~~~ 174 (183)
+++++.
T Consensus 163 ~~~~~~ 168 (172)
T 2y9m_A 163 LAERER 168 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998874
No 38
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.9e-45 Score=281.48 Aligned_cols=143 Identities=27% Similarity=0.538 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112 29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 107 (183)
++.+||++|++++. ++++.+. +. +|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 25 ~a~~RL~kEl~~l~-~~g~~v~-~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLI-ESKHEVT-IL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHH-HSSSCEE-EE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcC-cCCCEEE-EC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 58999999999995 3577775 33 5789999999 999999999999999999999999999999999999999999
Q ss_pred -CCceecccccCcccCCccHHhHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCC
Q 030112 108 -EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIG 175 (183)
Q Consensus 108 -~G~vcl~~l~~~W~p~~~i~~iL~~-i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~ 175 (183)
+|.||+++|.++|+|+++|.+||.+ |+++|.+|++++|+|.|||++|++|+++|.++||+|+++++..
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~ 170 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSH
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999998854
No 39
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=4e-44 Score=276.60 Aligned_cols=142 Identities=28% Similarity=0.527 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccC
Q 030112 29 ARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDL 107 (183)
Q Consensus 29 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~ 107 (183)
++.+||++|++++...+ +.+ +. .+|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~-~~v--~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNST-RKV--YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSS-SCE--EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCC-CCC--CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 56799999999994332 334 33 68999999999 999999999999999999999999999999999999999996
Q ss_pred -CCceecccccCcccCCccHHhHHHHH-HHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 030112 108 -EGNVCLNVLREDWKPVLNINTIIYGL-YHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYI 174 (183)
Q Consensus 108 -~G~vcl~~l~~~W~p~~~i~~iL~~i-~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~ 174 (183)
+|.||+++|.++|+|+++|.+||.+| +++|.+|++++|+|.|||.+|++|+++|.++||+++++++.
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999997 79999999999999999999999999999999999999874
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=4.4e-43 Score=302.46 Aligned_cols=152 Identities=30% Similarity=0.667 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccC
Q 030112 28 CARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPN 104 (183)
Q Consensus 28 ~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 104 (183)
+.|.+||++|++++ ++++++.+. |. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccc
Confidence 46899999999999 677788775 66 68999999999 999999999999999999999999999999999999999
Q ss_pred ccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHhcCCCCCcccCC
Q 030112 105 IDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACFETNVRMALQGGYIGDEYFEP 181 (183)
Q Consensus 105 V~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~~~~~~~~~~ 181 (183)
|+.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.|||++|++|+++|.++||+|+.+++.....+|+
T Consensus 80 v~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v~~De 156 (399)
T 4ddg_A 80 INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGSAYDE 156 (399)
T ss_dssp BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred cCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877664
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=4.8e-42 Score=264.18 Aligned_cols=141 Identities=26% Similarity=0.476 Sum_probs=126.0
Q ss_pred CCcchHHHHHHHHHHhhc--CC------------CCCceEeccCCCCCceEEEEEE-eCCCCCCC--CcEEEEEEEeCCC
Q 030112 24 VKKQCARELRLHKDITEL--NL------------PEACKISFPNGQDDLMNFEVSI-KPDEGYYQ--NGTFVFSFEVPPI 86 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~~------------~~~~~~~~~~~~~n~~~w~~~i-gp~~tpye--gg~f~~~i~fp~~ 86 (183)
.+|++.+.+||++|++++ +. +.++.+. ++ ++|+++|+++| ||++|||+ ||.|+++|.||++
T Consensus 3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~ 80 (167)
T 4ds2_A 3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDD 80 (167)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTT
T ss_pred ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCC
Confidence 346667889999999999 22 3455554 44 78999999999 99999999 9999999999999
Q ss_pred CCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHH-HHHHhhcC--CCCCCCccHHHHHHHHhCHHHHHH
Q 030112 87 YPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIY-GLYHLFTE--PNHEDPLNHDAAELLRDSPACFET 163 (183)
Q Consensus 87 YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~-~i~~ll~~--p~~~~p~n~eaa~~~~~~~~~f~~ 163 (183)
||++||+|+|.|+||||||+.+|.||+++|.++|+|+++++++|. .|++++.+ |++++|+|.|||++|++|+++|++
T Consensus 81 YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~ 160 (167)
T 4ds2_A 81 YPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAA 160 (167)
T ss_dssp TTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHH
T ss_pred CCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHH
Confidence 999999999999999999999999999999999999999999754 67777775 899999999999999999999999
Q ss_pred HHH
Q 030112 164 NVR 166 (183)
Q Consensus 164 ~~r 166 (183)
+||
T Consensus 161 ~vr 163 (167)
T 4ds2_A 161 RVR 163 (167)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.8e-40 Score=252.58 Aligned_cols=133 Identities=20% Similarity=0.352 Sum_probs=117.4
Q ss_pred CCcchHHHHHHHHHHhhc--C-CCCCceEeccCC-CCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 24 VKKQCARELRLHKDITEL--N-LPEACKISFPNG-QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~-~~~~~~~~~~~~-~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
.....++.+||++|++++ + .++++.+..... ..|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t 95 (156)
T 2q0v_A 16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT 95 (156)
T ss_dssp CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence 345677889999999999 3 456777764331 23699999999 999999999999999999999999999999999
Q ss_pred cccccCccCCCce---ecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 030112 99 KVYHPNIDLEGNV---CLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDS 157 (183)
Q Consensus 99 ~i~HpnV~~~G~v---cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~ 157 (183)
+||||||+.+|.| |++++. +|+|+++|++||.+|+++|.+|++++|+|.+||.+|.+|
T Consensus 96 ~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 96 KIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred ccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999999999 888887 599999999999999999999999999999999998765
No 43
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=8.1e-39 Score=244.18 Aligned_cols=127 Identities=20% Similarity=0.390 Sum_probs=113.1
Q ss_pred CCcchHHHHHHHHHHhhc--CCCCC-ceEeccCCCCC--ceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 24 VKKQCARELRLHKDITEL--NLPEA-CKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~~~~~-~~~~~~~~~~n--~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
+....++.+||++|++++ +.+++ +.+...+ ++| +++|+++| ||++||||||+|+++|.||++||++||+|+|.
T Consensus 20 ~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 98 (160)
T 2a4d_A 20 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV 98 (160)
T ss_dssp -CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESS-TTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CeeechHHHHHHHHHHHHHhCCCCCcEEEEecC-CccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEe
Confidence 345678999999999999 34556 5555334 444 89999999 99999999999999999999999999999999
Q ss_pred ccccccCcc-CCCceeccccc--CcccCCccHHhHHHHHHHhhc-CCCCCCCccHHHH
Q 030112 98 TKVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFT-EPNHEDPLNHDAA 151 (183)
Q Consensus 98 t~i~HpnV~-~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~-~p~~~~p~n~eaa 151 (183)
|+||||||+ .+|.||++++. ++|+|+++|++||.+|+++|. +|++++|+|.|||
T Consensus 99 T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 99 TKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred cCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 999999999 59999999997 899999999999999999995 6999999999987
No 44
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=7e-39 Score=267.53 Aligned_cols=150 Identities=27% Similarity=0.452 Sum_probs=133.8
Q ss_pred CCcchHHHHHHHHHHhhc--CCCCCce--Ee-ccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 24 VKKQCARELRLHKDITEL--NLPEACK--IS-FPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l--~~~~~~~--~~-~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
..+++.+.+||++|++.| +.++++. +. .++ ++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~-ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCD-EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE-SSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCcccceeeccc-CCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 346788999999999999 4455432 21 234 68999999999 99999999999999999999999999999999
Q ss_pred cc-----ccccCccCCCceeccccc-------CcccCCc-cHHhHHHHHHHhhc--CCCCCCCccHHH--HHHHHhCHHH
Q 030112 98 TK-----VYHPNIDLEGNVCLNVLR-------EDWKPVL-NINTIIYGLYHLFT--EPNHEDPLNHDA--AELLRDSPAC 160 (183)
Q Consensus 98 t~-----i~HpnV~~~G~vcl~~l~-------~~W~p~~-~i~~iL~~i~~ll~--~p~~~~p~n~ea--a~~~~~~~~~ 160 (183)
|+ ||||||+.+|.||+++|. ++|+|++ +|.+||.+|++||. +|++++|+|.+| +.+|.+|+++
T Consensus 150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~ 229 (323)
T 3ceg_A 150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE 229 (323)
T ss_dssp CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence 98 999999999999999997 6899999 89999999999996 677899999987 5789999999
Q ss_pred HHHHHHHHHhcCCC
Q 030112 161 FETNVRMALQGGYI 174 (183)
Q Consensus 161 f~~~~r~~~~~~~~ 174 (183)
|.++||+++.+++.
T Consensus 230 Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 230 YDGNIRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998763
No 45
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-38 Score=234.66 Aligned_cols=115 Identities=20% Similarity=0.469 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc-cc
Q 030112 27 QCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV-YH 102 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 102 (183)
++++.+||++|++++ +.++++.+. ++ ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 81 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH 81 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEE-eC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence 456789999999999 566787775 55 68999999999 99999999999999999999999999999999996 99
Q ss_pred cCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCC
Q 030112 103 PNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHE 143 (183)
Q Consensus 103 pnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~ 143 (183)
|||+.+|.||+++|.++|+|++++++||.+|+++|.+|+..
T Consensus 82 Pnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999754
No 46
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.9e-38 Score=234.31 Aligned_cols=116 Identities=22% Similarity=0.465 Sum_probs=107.4
Q ss_pred CcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc-
Q 030112 25 KKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV- 100 (183)
Q Consensus 25 ~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i- 100 (183)
..++.+.+||++|++++ +.+.++.+. +. ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 16 ~~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 93 (136)
T 2h2y_A 16 YNLGNANYRIQKELNNFLKNPPINCTID-VH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPP 93 (136)
T ss_dssp CCTTSHHHHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCC
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEE-ec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCC
Confidence 35567899999999999 667787775 55 68999999999 99999999999999999999999999999999996
Q ss_pred cccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCC
Q 030112 101 YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNH 142 (183)
Q Consensus 101 ~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~ 142 (183)
|||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|+.
T Consensus 94 ~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 94 KHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 999999999999999999999999999999999999999874
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=2.2e-39 Score=242.14 Aligned_cols=126 Identities=23% Similarity=0.473 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHhhc--C-CCCCceEeccCCC-CCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 28 CARELRLHKDITEL--N-LPEACKISFPNGQ-DDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 28 ~~~~~RL~~E~~~l--~-~~~~~~~~~~~~~-~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
.++.+||++|++++ + .++++.+...+.+ .|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 84 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence 35679999999999 3 4567777643312 2599999999 9999999999999999999999999999999999999
Q ss_pred cCccCC-Cce--ecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHH
Q 030112 103 PNIDLE-GNV--CLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELL 154 (183)
Q Consensus 103 pnV~~~-G~v--cl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~ 154 (183)
|||+.+ |.| |++++. +|+|++++++||.+|+++|.+|++++|+|.+|+.+|
T Consensus 85 Pnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred CCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 999995 999 999886 899999999999999999999999999999988654
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.7e-38 Score=232.53 Aligned_cols=119 Identities=24% Similarity=0.545 Sum_probs=104.2
Q ss_pred CCCCCCCcchHHHHHHHHHHhhc--CCCCCceEec-cCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCce
Q 030112 19 TGGTPVKKQCARELRLHKDITEL--NLPEACKISF-PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKV 94 (183)
Q Consensus 19 ~~~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~-~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v 94 (183)
+|+.....++.+.+||++|++++ +.++++.+.. ++ ++|+++|+++| ||++||||||.|+++|.||++||++||+|
T Consensus 12 ~~~~~~~~Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v 90 (136)
T 2a7l_A 12 SGLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSV-QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQV 90 (136)
T ss_dssp --CCCGGGGTTSCHHHHHHHHHHHHSCCTTCCCCTTCC-CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEE
T ss_pred cccccchhccHHHHHHHHHHHHHHhCCCCCEEEEEeeC-ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEE
Confidence 34433344444569999999999 6677777542 44 78999999999 99999999999999999999999999999
Q ss_pred eEecccc--ccCccCCCceecccccCcccCCccHHhHHHHHHHhhc
Q 030112 95 KCKTKVY--HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 138 (183)
Q Consensus 95 ~f~t~i~--HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~ 138 (183)
+|.|++| ||||+.+|.||+++|.++|+|++++++||.+|+++|.
T Consensus 91 ~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 91 MFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp EEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred EEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999 9999999999999999999999999999999999974
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=242.60 Aligned_cols=124 Identities=20% Similarity=0.392 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHhhc--CCCCC-ceEeccCCCC--CceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccc
Q 030112 27 QCARELRLHKDITEL--NLPEA-CKISFPNGQD--DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l--~~~~~-~~~~~~~~~~--n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 100 (183)
..++.+||++|++++ +.+++ +.+...+ ++ |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 111 (170)
T 2hlw_A 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111 (170)
T ss_dssp CCCHHHHHHHHHHHHHHCCGGGCEEEEESS-TTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCcEEEEecC-cccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence 466889999999999 44556 4554334 44 499999999 99999999999999999999999999999999999
Q ss_pred cccCcc-CCCceeccccc--CcccCCccHHhHHHHHHHhhcC-CCCCCCccHHHH
Q 030112 101 YHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTE-PNHEDPLNHDAA 151 (183)
Q Consensus 101 ~HpnV~-~~G~vcl~~l~--~~W~p~~~i~~iL~~i~~ll~~-p~~~~p~n~eaa 151 (183)
|||||+ .+|.||++++. ++|+|+++|++||.+|+++|.+ |++++|+|.|||
T Consensus 112 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 112 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred ccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 999999 59999999997 8999999999999999999975 999999999987
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-35 Score=232.24 Aligned_cols=121 Identities=17% Similarity=0.365 Sum_probs=98.9
Q ss_pred CCCCCcchHHHHHHHHHHhhc--CCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 21 GTPVKKQCARELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 21 ~~~~~~~~~~~~RL~~E~~~l--~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
+|+++..+.+.+||++|+++| +.++++.+. +. ++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.
T Consensus 6 ~~~~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~ 83 (187)
T 2f4w_A 6 TSSKRAPTTATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMI 83 (187)
T ss_dssp --------CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEEC
T ss_pred cCCCCCccHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Confidence 344567788999999999999 567788775 55 68999999999 99999999999999999999999999999999
Q ss_pred ccccccCccCCCceecccc---cCcccCCccHHhHHHHHHHhhcCCCCCCC
Q 030112 98 TKVYHPNIDLEGNVCLNVL---REDWKPVLNINTIIYGLYHLFTEPNHEDP 145 (183)
Q Consensus 98 t~i~HpnV~~~G~vcl~~l---~~~W~p~~~i~~iL~~i~~ll~~p~~~~p 145 (183)
|+ ||||+.+|.||+++| .++|+|+++|.+||.+|+++|.+|+++..
T Consensus 84 T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 84 TP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp SC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred CC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 99 999999999999999 68999999999999999999999887643
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.9e-36 Score=236.49 Aligned_cols=140 Identities=14% Similarity=0.270 Sum_probs=115.5
Q ss_pred CCCCcchHHHHHHHHHHhhcC--C---CCCceEeccCCCCCceEEEEEE-eC-CCCCCCC-----------cEEEEEEEe
Q 030112 22 TPVKKQCARELRLHKDITELN--L---PEACKISFPNGQDDLMNFEVSI-KP-DEGYYQN-----------GTFVFSFEV 83 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l~--~---~~~~~~~~~~~~~n~~~w~~~i-gp-~~tpyeg-----------g~f~~~i~f 83 (183)
.+..++.++.+||++||++|. . +.++.+. +. ++|+++|+++| || ++|||+| |.|+++|.|
T Consensus 20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~f 97 (186)
T 1zuo_A 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSF 97 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-Ec-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEEC
Confidence 344567789999999999993 2 3556664 55 68999999999 97 9999998 899999999
Q ss_pred CCCCCCCCCceeEecccccc-CccCCCceeccccc-CcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHH
Q 030112 84 PPIYPHDAPKVKCKTKVYHP-NIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPACF 161 (183)
Q Consensus 84 p~~YP~~pP~v~f~t~i~Hp-nV~~~G~vcl~~l~-~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f 161 (183)
|++||++||+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|+... .|..++.+|
T Consensus 98 p~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y 169 (186)
T 1zuo_A 98 KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQY 169 (186)
T ss_dssp CTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCC
T ss_pred CCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHH
Confidence 99999999999999999999 69999999999997 789999999999999999999986432 344455666
Q ss_pred HHHHHHHHhc
Q 030112 162 ETNVRMALQG 171 (183)
Q Consensus 162 ~~~~r~~~~~ 171 (183)
.+.+++++.+
T Consensus 170 ~~~~~~~~~~ 179 (186)
T 1zuo_A 170 NLARAQQSYN 179 (186)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6666655443
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.91 E-value=3.8e-26 Score=172.72 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=89.5
Q ss_pred CCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCCCC
Q 030112 24 VKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAP 92 (183)
Q Consensus 24 ~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~pP 92 (183)
++......+||++||+.|.. ++. +. .+|+..|.+.+ ||.+|+|+|| .|.++|.||++||.+||
T Consensus 27 p~~~~~w~~RL~eE~k~L~k----~v~-p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PP 100 (172)
T 2z6o_A 27 PRDRELWVQRLKEEYQSLIR----YVE-NN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAP 100 (172)
T ss_dssp TTCTHHHHHHHHHHHHHHHH----HHH-HH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC
T ss_pred CCccHHHHHHHHHHHHHHHH----Hhc-cC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCC
Confidence 45567779999999999954 232 44 67899999999 9999999999 99999999999999999
Q ss_pred ceeEecc-ccccCccCCCceecccc-cC---cccCCccHHhHHH
Q 030112 93 KVKCKTK-VYHPNIDLEGNVCLNVL-RE---DWKPVLNINTIIY 131 (183)
Q Consensus 93 ~v~f~t~-i~HpnV~~~G~vcl~~l-~~---~W~p~~~i~~iL~ 131 (183)
+|+|.+. +||||||.+|+||++++ .+ .|+|+++|.++|.
T Consensus 101 eV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 101 EIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp CCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred eeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 9999998 99999999999999999 43 4559999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.78 E-value=5.4e-19 Score=134.37 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=85.0
Q ss_pred HHHHHHHhhc-CCCCCceEe---ccCCCCCceEEEEEE-eCCCCCCCCcE---EEEEEEeCCCCCCCCCceeEec-----
Q 030112 32 LRLHKDITEL-NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKT----- 98 (183)
Q Consensus 32 ~RL~~E~~~l-~~~~~~~~~---~~~~~~n~~~w~~~i-gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t----- 98 (183)
+|..+|...+ ..-+..... ... ++...++.+.+ |...++|+||. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 4556666666 222222221 112 34445566666 66668999998 8899999999999999998865
Q ss_pred --c---cc-ccCccCCCceecccccCcccC-CccHHhHHHHHHHhhcCCCCCC
Q 030112 99 --K---VY-HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTEPNHED 144 (183)
Q Consensus 99 --~---i~-HpnV~~~G~vcl~~l~~~W~p-~~~i~~iL~~i~~ll~~p~~~~ 144 (183)
+ |+ |||||.+|+||++.|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999999999999995 6988 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.70 E-value=1.8e-18 Score=128.12 Aligned_cols=94 Identities=14% Similarity=0.279 Sum_probs=76.1
Q ss_pred CCCCcchHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCc----------EEEEEEEeCCCCCCC
Q 030112 22 TPVKKQCARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHD 90 (183)
Q Consensus 22 ~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg----------~f~~~i~fp~~YP~~ 90 (183)
.+++....-..||+.||..|= .. +.. +.++-..|...+ |+.||+|+|+ .|.++|.||.+||.+
T Consensus 27 agPrd~~~w~~RlkeEy~alI--~y--v~~--nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~t 100 (168)
T 3kpa_A 27 AGPRDGDKWTARLKEEYASLI--TY--VEH--NKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQA 100 (168)
T ss_dssp CCTTSTHHHHHHHHHHHHHHH--HH--HHH--HHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH--HH--HHh--cccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCC
Confidence 455566778999999999881 11 111 122334588888 9999999999 999999999999999
Q ss_pred CCceeEecc-ccccCccCCCceecccccCcccCCc
Q 030112 91 APKVKCKTK-VYHPNIDLEGNVCLNVLREDWKPVL 124 (183)
Q Consensus 91 pP~v~f~t~-i~HpnV~~~G~vcl~~l~~~W~p~~ 124 (183)
||.|+|.+. ++||++|.+|+||+++. |+|.+
T Consensus 101 PPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 101 PPEIALPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred CCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence 999999995 89999999999999986 66654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.49 E-value=5.1e-14 Score=105.24 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=70.6
Q ss_pred CCCceEEEEEEeCCCCCCCCcEEEE--EEEeCCCCCCCCCceeEecc------ccccCccCCCceecccccCcccC-Ccc
Q 030112 55 QDDLMNFEVSIKPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTK------VYHPNIDLEGNVCLNVLREDWKP-VLN 125 (183)
Q Consensus 55 ~~n~~~w~~~igp~~tpyegg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HpnV~~~G~vcl~~l~~~W~p-~~~ 125 (183)
..++..|.++|. .+|+|+.|.+ .|.||++||++||.| |.++ ..|||||.+|+||++.|.+ |++ ..+
T Consensus 50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~sn 124 (146)
T 3obq_A 50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSD 124 (146)
T ss_dssp TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCC
T ss_pred hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCC
Confidence 468899999993 6799999885 899999999999999 6655 5899999999999999965 977 799
Q ss_pred HHhHHHHHHHhhcC
Q 030112 126 INTIIYGLYHLFTE 139 (183)
Q Consensus 126 i~~iL~~i~~ll~~ 139 (183)
+.+++..|++.|.+
T Consensus 125 L~~ll~~l~~~F~~ 138 (146)
T 3obq_A 125 LLGLIQVMIVVFGD 138 (146)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998875
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.002 Score=46.10 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhcCCCCCceEeccCCCCCceEEEEEEeC-CCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 28 CARELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKP-DEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 28 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~igp-~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+....+...|+..|+.--+-.+.+.. +....+.+.+.+ .+..-+.-.+.+.|.||++||..||.|.+.+
T Consensus 9 ~~~~e~q~~EleaL~sIy~d~~~~~~--~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 9 TDYGEEQRNELEALESIYPDSFTVLS--ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSEEECC--SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHHccCceEEcc--CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 34456677888888322222333222 224556666622 2222233468899999999999999997654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.055 Score=38.89 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhhcCCCCCceEeccCCC------CCceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEec
Q 030112 27 QCARELRLHKDITELNLPEACKISFPNGQ------DDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~------~n~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
+.....+-..|+..|+.--+..+...... +....+.+.+.+....-..-.+.+.+.+|++||..||.|.+.+
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 34555667788888843222234322211 1245677777433222123468899999999999999998754
No 58
>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}
Probab=95.29 E-value=0.0097 Score=30.69 Aligned_cols=18 Identities=39% Similarity=0.770 Sum_probs=14.3
Q ss_pred CccchhhhHhhHHHHhhc
Q 030112 1 MIRLFKVKEKQKEDAENN 18 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (183)
||++|+++++|+++..+.
T Consensus 1 MIkLFSlK~kk~~e~~~~ 18 (26)
T 1tt5_E 1 MIKLFSLKQQKKEEESAG 18 (26)
T ss_pred CcchhhhhHHHHHhhccc
Confidence 899999999996555543
No 59
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.27 E-value=0.14 Score=36.24 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.3
Q ss_pred ceEEEEEEeCCCCCCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 58 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 58 ~~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
...+.+.+.+.+..-..-.+.+.+.+|++||..||.|...
T Consensus 39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4577777744331111236899999999999999999754
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.27 E-value=0.049 Score=39.06 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhhcCCCCCceEeccCCCC-----CceEEEEEEeCCCC--CCCCcEEEEEEEeCCCCCCCCCceeEe
Q 030112 27 QCARELRLHKDITELNLPEACKISFPNGQD-----DLMNFEVSIKPDEG--YYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (183)
Q Consensus 27 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~-----n~~~w~~~igp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~ 97 (183)
+.....+...|+..|+.--+-.+....... ....+.+.+.+.+. .-..-.+.+.|.||++||..+|.|.+.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred CcchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 345556678888888321112232222111 13456666643221 001236889999999999999999874
No 61
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.52 E-value=0.042 Score=38.96 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCCCceEeccCCC--CCceEEEEEEeCC-CCCCC--CcEEEEEEEeCCCCCCCCCceeEec
Q 030112 33 RLHKDITELNLPEACKISFPNGQ--DDLMNFEVSIKPD-EGYYQ--NGTFVFSFEVPPIYPHDAPKVKCKT 98 (183)
Q Consensus 33 RL~~E~~~l~~~~~~~~~~~~~~--~n~~~w~~~igp~-~tpye--gg~f~~~i~fp~~YP~~pP~v~f~t 98 (183)
....|+..|+---+-.+.+.... .+...+.+.+.+. +..-+ .-.+.+.|.||++||..+|.|...+
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 56677877732111222222211 2344444455322 21111 2468899999999999999998775
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.33 E-value=0.16 Score=37.38 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=40.1
Q ss_pred EEEEEEEeCCCCCCCCCceeEeccccccCccCCCceecccccCcccCCccHHhHHHHHHHhhcCCCCCCCccHHHHHHHH
Q 030112 76 TFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLR 155 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~~~~ 155 (183)
.+.+.|.+|++||..+|.|...+. |-.......+...|...+.+-+...+.=..+....+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~--------------------~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lq 135 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS--------------------ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQ 135 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS--------------------SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC--------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 799999999999999999975542 222222334445555555444445555555555555
Q ss_pred hCHHH
Q 030112 156 DSPAC 160 (183)
Q Consensus 156 ~~~~~ 160 (183)
++-+.
T Consensus 136 e~~~~ 140 (154)
T 2daw_A 136 DNSAS 140 (154)
T ss_dssp HTTHH
T ss_pred HHHHH
Confidence 55433
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.27 E-value=0.36 Score=35.24 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEEEeCCCCCCCCCceeEecc
Q 030112 76 TFVFSFEVPPIYPHDAPKVKCKTK 99 (183)
Q Consensus 76 ~f~~~i~fp~~YP~~pP~v~f~t~ 99 (183)
.+.+.|.+|++||..||.|...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999986653
No 64
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=92.75 E-value=0.59 Score=35.64 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=55.9
Q ss_pred HHHHHHhhcCCCCCceEeccCCCCCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccccCccCCCce
Q 030112 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNV 111 (183)
Q Consensus 33 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~v 111 (183)
+|.+|+..+-=..- +.+ ..++....+++ ... |..+.++|.++.+||.+||.+...-|. |
T Consensus 5 ~li~Ei~~iGW~~l--~~i---d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~-------- 64 (186)
T 3zqs_A 5 SLIEEIGTLGWDKL--VYA---DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--P-------- 64 (186)
T ss_dssp SHHHHHHHHCGGGE--EEE---CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--C--------
T ss_pred HHHHHHHHhCCcee--eee---cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--C--------
Confidence 57778877721111 111 34677888888 433 568999999999999999988655442 1
Q ss_pred ecccccCcccCCccHHhHHHHHHHhhc
Q 030112 112 CLNVLREDWKPVLNINTIIYGLYHLFT 138 (183)
Q Consensus 112 cl~~l~~~W~p~~~i~~iL~~i~~ll~ 138 (183)
+.-.|.|..++.+++...+.++.
T Consensus 65 ----~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 65 ----FCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred ----cccccCCCccHHHHHHHHHHHHH
Confidence 11379999898888877665554
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=48.54 E-value=3.7 Score=28.42 Aligned_cols=32 Identities=9% Similarity=-0.127 Sum_probs=0.0
Q ss_pred CCCCCCccHHHHHHHHhCHHHHHHHHHHHHhc
Q 030112 140 PNHEDPLNHDAAELLRDSPACFETNVRMALQG 171 (183)
Q Consensus 140 p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~ 171 (183)
.....|.+.++|++|.++++.|...||.|..-
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~ 52 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYD 52 (108)
T ss_dssp --------------------------------
T ss_pred cccCCchhHHHHHHHHhchhcccccccccccc
Confidence 34556889999999999999999999999833
No 66
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=28.24 E-value=34 Score=22.50 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHhhc
Q 030112 26 KQCARELRLHKDITEL 41 (183)
Q Consensus 26 ~~~~~~~RL~~E~~~l 41 (183)
..-+-+|||++|++-|
T Consensus 59 s~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 59 SSISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCC
Confidence 3556679999999999
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=22.96 E-value=1.8e+02 Score=21.61 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCceEEEEEE-eCCCCCCCCcEEEEEEEeCCCCCCCCCceeEeccccc
Q 030112 56 DDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYH 102 (183)
Q Consensus 56 ~n~~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 102 (183)
+..+.|.|-+ ++.+.--..-+=++.+.+.+.||. |...+..+.|.
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPFe 75 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPFE 75 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSEE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCCE
Confidence 4678999999 776543334567788999999975 77766666554
No 68
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=21.33 E-value=35 Score=16.68 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=9.2
Q ss_pred CCCCceeEeccccccC
Q 030112 89 HDAPKVKCKTKVYHPN 104 (183)
Q Consensus 89 ~~pP~v~f~t~i~Hpn 104 (183)
...|.-.|..+.|||-
T Consensus 5 mtlpenyfserpyhpp 20 (26)
T 2jrw_A 5 MTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCSSSSCCSSSCCSC
T ss_pred cccchhhcccCCCCCC
Confidence 3344445666677764
No 69
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=20.22 E-value=95 Score=18.88 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=17.9
Q ss_pred ccHHHHHHHHhCHHHHHHHH
Q 030112 146 LNHDAAELLRDSPACFETNV 165 (183)
Q Consensus 146 ~n~eaa~~~~~~~~~f~~~~ 165 (183)
.|++.+.+...|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 58999999999999999865
Done!