BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030113
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 229 bits (585), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 229 bits (584), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + +K W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V KN
Sbjct: 1 MGLIFAKLW-SLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
F WD+GGQE LR+SW TYY T +I+V+DS DR R++I K+EL+R+L HEDL+ +
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
VLIFANKQD+K MT AEI+ L+L SIK+H WHIQ+C ALTG+GL GLEW++ R+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 229 bits (584), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 136/177 (76%), Gaps = 1/177 (0%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG L ++ W LF +++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
RF WD+GGQE LR+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ +
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+LIFANKQD+K+ MT AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 128/162 (79%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
+++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N RF WD+GGQE LR
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LIFANKQD+K+ MT
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/162 (62%), Positives = 128/162 (79%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
+++K+IIVGLDNAGKTT LY+ + EVV T PT+GSNVEE+V N RF WD+GGQE LR
Sbjct: 21 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 80
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+SW TYY T VIVV+DSTDR RIS+ ++EL+++L HEDL+ + +LIFANKQD+K+ MT
Sbjct: 81 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 140
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
AEI+ L L SIK+H WHIQAC ALTG+GL GLEW+ R+
Sbjct: 141 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 182
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 206 bits (524), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 131/181 (72%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG SK + LF K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKN
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+R+R+ W YYR T VI VIDS DR+RI ++ + R+L ++L+++V
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
L+FANKQDL +AM+ AEIT+ L LHSI+N W IQ+ A +G+GL +GLEW+S + +
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQ 180
Query: 181 A 181
+
Sbjct: 181 S 181
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 202 bits (515), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 126/174 (72%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G SK + LF K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKNI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F WDVGGQ+R+R+ W YYR T VI V+DS DR+RI ++ + R+L ++L+++
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
L+FANKQDL +AM+ AEIT+ L LHSI+N W IQA A +G+GL +GLEW+S
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 91/180 (50%), Positives = 132/180 (73%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG + + + LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM AEITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 200 bits (508), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 128/181 (70%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG K + LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W Y++ T +I V+DS DR R+ +DEL R+L ++L+ +V
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM AEITD L LHS++ W+IQ+ A +G+GL +GL+W+S + K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
Query: 181 A 181
A
Sbjct: 184 A 184
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 131/179 (73%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G + + + LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI
Sbjct: 1 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F WDVGGQ+++R W Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+
Sbjct: 61 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
L+FANKQDL +AM AEITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 127/169 (75%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ 71
LF K+ +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
+++R W Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FANKQDL
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+AM AEITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 123/174 (70%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G SK + LF K+ +I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + Y NI
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F WDVGGQ+R+R+ W YY T VI V+DS DR+RI ++ + R+L ++L ++
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
L+FANKQDL +AM+ AEIT+ L LHSI+N W IQA A +G+GL +GLEW+S
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 192 bits (489), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 118/157 (75%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGEV+TT PT+G NVE + YKNI F WDVGGQ+R+R+ W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YYR T VI V+DS DR+RI ++ + R+L ++L+++ L+FANKQDL +AM+ AE
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
IT+ L LHSI+N W IQA A +G+GL +GLEW+S
Sbjct: 122 ITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 158
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 123/162 (75%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGGQ+++R W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FANKQDL +AM AE
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
ITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 125/174 (71%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG VS+ + LF KD +I++VGLD AGKTT LYK+ LGEVVTT PT+G NVE + ++N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W YY T +I V+DS DR RI ++EL R++ E+L+ ++
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+L+FANKQDL +AM+ AE+T+ L L++I+ +W IQ+ A GDGL +G +W++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLT 174
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 126/180 (70%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG +S + LF K +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+R+R W Y++ T +I V+DS DR RI + DEL ++L ++L+ +V
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+L+FANKQDL +AM +E+TD L L S++N W++QA A G GL +GL+W+S ++ +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 122/162 (75%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI F WDVGG +++R W
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y++ T +I V+DS DR R++ ++EL R+L ++L+ +V+L+FANKQDL +AM AE
Sbjct: 64 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 123
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
ITD L LHS+++ +W+IQA A +GDGL +GL+W+S ++ +
Sbjct: 124 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 125/177 (70%), Gaps = 4/177 (2%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG+ +SK L K+ +I++VGLD AGKT+ LYKL LGE+VTT PT+G NVE + YKN
Sbjct: 5 MGSWLSK----LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
I F WDVGGQ+++R W YY+ T A+I V+DS DR RI ++EL ++L +++++++
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+L+FANK DL AM+ +E+T+ L L +IKN W+ Q A GDGL +GL+W++ +
Sbjct: 121 LLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG ++SK +F K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN
Sbjct: 1 MGKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
++F WDVGGQ+++R W YY GT +I V+D DR RI + EL R++ +++ ++
Sbjct: 57 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+LIFANKQDL DAM P EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 120/173 (69%), Gaps = 4/173 (2%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G ++SK +F K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN+
Sbjct: 1 GKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 56
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
+F WDVGGQ+++R W YY GT +I V+D DR RI + EL R++ +++ +++
Sbjct: 57 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
LIFANKQDL DAM P EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 117 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
Query: 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN 60
MG ++SK +F K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN
Sbjct: 1 MGKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
++F WDVGG +++R W YY GT +I V+D DR RI + EL R++ +++ ++
Sbjct: 57 VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 VLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
+LIFANKQDL DAM P EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 170
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 124/179 (69%), Gaps = 4/179 (2%)
Query: 2 GALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNI 61
G+L S+ +F K +I++VGLD AGKTT LYKL LGE+VTT PT+G NVE + YKNI
Sbjct: 18 GSLFSR----IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 73
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F WDVGGQ+++R W Y++ T +I V+DS DR R+ DEL ++L ++L+ +V+
Sbjct: 74 CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133
Query: 122 LIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
L+FANKQD+ +AM +E+TD L L +++ W++QA A G GL DGL+W+S ++ +
Sbjct: 134 LVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 114/165 (69%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
K+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGGQ+++R
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W YY GT +I V+D DR RI + EL R++ +++ +++LIFANKQDL DAM
Sbjct: 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 440
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
P EI + L L I++ +W++Q A +GDGL +GL W++ K
Sbjct: 441 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 179 bits (455), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 117/165 (70%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GGQ +R
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W YY T AVI V+DS DR RI I K EL +L E+L+ +++++FANKQD++ AMT
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
P+E+ +AL L ++K+ W I SA G GL + +EW+ + + +
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGGQ+++R W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY GT +I V+D DR RI + EL R++ +++ +++LIFANKQDL DAM P E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
I + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 111/156 (71%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGGQ+++R W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY GT +I V+D DR RI + EL R++ +++ +++LIFANKQDL DAM P E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
I + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 174 bits (440), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 111/158 (70%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76
+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGG +++R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136
W YY GT +I V+D DR RI + EL R++ +++ +++LIFANKQDL DAM P
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 137 AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 159
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 111/158 (70%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76
+ +I+++GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGG +++R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136
W YY GT +I V+D DR RI + EL R++ +++ +++LIFANKQDL DAM P
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 137 AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
EI + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 160
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 1 MGALVSKFWFMLF-PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK 59
MG + S + L+ K+ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE L YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119
N++ WD+GGQ +R W YY T AVI V+DSTD+ R+S EL +L E+LQ +
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
+L+FANKQD A++ +E++ L+L +K+ W I A SA+ G+G+ +GL+W+
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 108/156 (69%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+I+ +GLD AGKTT LYKL LG+ VTT PTVG NVE + YKN++F WDVGGQ+++R W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
YY GT +I V+D DR RI + EL R++ + + +++LIFANKQDL DA P E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174
I + L L I++ +W++Q A +GDGL +GL W++
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 157
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 113/160 (70%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GG +R
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W YY T AVI V+DS DR RI I K EL +L E+L+ +++++FANKQD++ AMT
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
+E+ ++L L ++K+ W I SA G GL + +EW+ +
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 162
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Query: 12 LFPG-KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGG 70
L P + +++++GLDNAGKT+ LY+LHLG+VVTT PTVG N+E L YKNI FE WD+GG
Sbjct: 16 LLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGG 75
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
Q +R W Y+ T AVI V+DSTDR R+ + K EL+ LL ++L+ S++LIFANKQDL
Sbjct: 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
DA + AEI + L + SI N W I S+ TGDGLV+G++W+ +R+
Sbjct: 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 107/158 (67%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +I+I+GLD AGKTT LY+L +GEVVTT PT+G NVE + YKN++F+ WD+GG +R
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W YY T AVI V+DS DR RI I K EL L E+L+ +++++FANKQD + A T
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173
+E ++L L ++K+ W I SA G GL + EW+
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWL 163
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 4/166 (2%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +++++GLDNAGKTT L K + +V T PT+G N++ L ++ + WDVGGQ+ LR
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ W Y+ T +I V+DS DR R+ + EL LL E L + +LIFANKQDL A++
Sbjct: 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW----ISQRV 177
I +AL L SI++H W IQ CSA+TG+ L+ G++W IS RV
Sbjct: 137 XNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 4/166 (2%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +++++GLDNAGKTT L K + +V T PT+G N++ L ++ + WDVGGQ+ LR
Sbjct: 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ W Y+ T +I V+DS DR R+ + EL LL E L + +LIFANKQDL A++
Sbjct: 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 136
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW----ISQRV 177
I +AL L SI++H W IQ CSA+TG+ L+ G++W IS RV
Sbjct: 137 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 145 bits (367), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 107/165 (64%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
++ +++++GLDNAGKTT L K + ++ T PT+G N++ L ++ + WDVGGQ+ LR
Sbjct: 15 RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 74
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
+ W Y+ T +I V+DS DR R+ + EL LL E L + +LIFANKQDL A++
Sbjct: 75 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 134
Query: 136 PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
I + L L SI++H W IQ CSA+TG+ L+ G++W+ ++ +
Sbjct: 135 SNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 105/162 (64%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
+++++GLDNAGKTT L K + +V T PT+G N++ L ++ + WDVGG + LR+ W
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y+ T +I V+DS DR R+ + EL LL E L + +LIFANKQDL A++
Sbjct: 63 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 122
Query: 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
I +AL L SI++H W IQ CSA+TG+ L+ G++W+ ++ +
Sbjct: 123 IQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 104/167 (62%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQER 73
P ++ +I+++GLDNAGKTT L +L ++ PT G N++ + + + WD+GGQ +
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+R W +Y+ T +I VIDS DR R EL LL E L VLIFANKQDL A
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V K
Sbjct: 134 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 104/167 (62%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQER 73
P ++ +I+++GLDNAGKTT L +L ++ PT G N++ + + + WD+GGQ +
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
+R W +Y+ T +I VIDS DR R EL LL E L VLIFANKQDL A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
+EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V K
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 4/156 (2%)
Query: 26 DNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGT 85
DNAGKTT L K + +V T PT+G N++ L ++ + WDVGGQ+ LR+ W Y+ T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL 145
+I V+DS DR R + EL LL E L + +LIFANKQDL A++ I +AL L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 HSIKNHDWHIQACSALTGDGLVDGLEW----ISQRV 177
SI++H W IQ CSA+TG+ L+ G++W IS RV
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 102/163 (62%)
Query: 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74
G + +I+++GLDNAGKTT L +L ++ PT G N++ + + + WD+GGQ ++
Sbjct: 2 GSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 61
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R W +Y+ T +I VIDS DR R EL LL E L VLIFANKQDL A
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 121
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V
Sbjct: 122 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 4/166 (2%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYKNIRFEAWDVGGQER 73
K+ ++ +GLDN+GKTT + KL + + PT+G ++E+ ++ F +D+ GQ R
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS--VVLIFANKQDLK 131
R W YY+ A+I VIDS+DR R+ + K+EL LL H D++H +L FANK DL+
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
DA+T +++ L L +IK+ WHI A A+ G+GL +G++W+ ++
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 132 bits (333), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%)
Query: 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74
G + +I+++GLDNAGKTT L +L ++ PT G N++ + + + WD+GG ++
Sbjct: 2 GSEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKI 61
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R W +Y+ T +I VIDS DR R EL LL E L VLIFANKQDL A
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 121
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+EI + L+LH+I++ W IQ+CSALTG+G+ DG+ W+ + V
Sbjct: 122 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 13/176 (7%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYKNIRFEAWDVGGQERLRT 76
++++ GLDN+GKTT + ++ + + H TVG NVE + F +D+GG ++ R
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRG 78
Query: 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-------VLIFANKQD 129
W TYY AVI V+DS+D R+ ++K E+ +L HED++ + L FANK D
Sbjct: 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138
Query: 130 LKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWISQ---RVTGKA 181
A T AE+ + L L ++ +H + I A + L G G+ +G W+ + R +GKA
Sbjct: 139 AAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKA 194
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
Query: 9 WF-MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAW 66
WF LF ++ ++ +VGL +GKTT + + G+ PTVG N+ ++ N+ + W
Sbjct: 22 WFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLW 81
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D+GGQ R R+ W Y RG A++ ++D+ D+ +I K+EL LL LQ VL+ N
Sbjct: 82 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 141
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
K+DL A+ E+ + ++L +I++ + + S D + L+W+ Q
Sbjct: 142 KRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAWDVGGQERL 74
++ ++ +VGL +GKTT + + G+ PTVG N+ ++ N+ + WD+GGQ R
Sbjct: 21 EEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRF 80
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R+ W Y RG +A++ +ID+ DR +I ++EL LL LQ VL+ NK+DL +A+
Sbjct: 81 RSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL 140
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
++ + ++L +I++ + + S D + L+W+ Q
Sbjct: 141 DEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKNIRFEAWDVGGQERL 74
++ ++ +VGL +GKTT + + G+ PTVG N+ ++ N+ + WD+GGQ R
Sbjct: 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 80
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134
R+ W Y RG A++ ++D+ D+ +I K+EL LL LQ VL+ NK+DL A+
Sbjct: 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140
Query: 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175
E+ + ++L +I++ + + S D + L+W+ Q
Sbjct: 141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLR 75
K K++ +GLDNAGKTT L+ L + T PT EEL NI+F +D+GG + R
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135
W Y+ + ++ ++D+ D R + EL L +L+ +I NK D +A++
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 136 PAEITDALSLHSIK-------NHDWHIQACSALTGDGLVDGLEWISQRV 177
AE+ AL L + + CS + +G ++ +W+SQ +
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 7/164 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78
K++ +GLDNAGKTT L+ L + T PT EEL NI+F +D+GG + R W
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138
Y+ + ++ ++D+ D R + EL L +L+ +I NK D +A++ AE
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 ITDALSLHSIK-------NHDWHIQACSALTGDGLVDGLEWISQ 175
+ AL L + + CS + +G ++ +W+SQ
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 166
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKL---HLGE-VVTTHPTVGSNVEELVYKNI 61
S F+ K K++ +GLDNAGKTT L+ L LG+ V T HPT EEL +
Sbjct: 24 SVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGM 79
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F +D+GG E+ R W Y + ++ ++D D +R+ K EL L+ E + + +
Sbjct: 80 TFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPI 139
Query: 122 LIFANKQDLKDAMTPAEITDALSLHS------------IKNHDWHIQACSALTGDGLVDG 169
LI NK D DA++ ++ + L+ + + CS L G +G
Sbjct: 140 LILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEG 199
Query: 170 LEWISQRV 177
W+SQ +
Sbjct: 200 FRWLSQYI 207
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKL---HLGE-VVTTHPTVGSNVEELVYKNI 61
S F+ K K++ +GLDNAGKTT L+ L LG+ V T HPT EEL +
Sbjct: 11 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGM 66
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F +D+GG + R W Y + ++ ++D D R+ K+EL L+ E + + +
Sbjct: 67 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 126
Query: 122 LIFANKQDLKDAMTPAEITD------------ALSLHSIKNHDWHIQACSALTGDGLVDG 169
LI NK D +A++ + + ++SL + + CS L G +G
Sbjct: 127 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 186
Query: 170 LEWISQRV 177
W++Q +
Sbjct: 187 FRWMAQYI 194
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKL---HLGE-VVTTHPTVGSNVEELVYKNI 61
S F+ K K++ +GLDNAGKTT L+ L LG+ V T HPT EEL +
Sbjct: 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGM 69
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F +D+GG + R W Y + ++ ++D D R+ K+EL L+ E + + +
Sbjct: 70 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 129
Query: 122 LIFANKQDLKDAMTPAEITD------------ALSLHSIKNHDWHIQACSALTGDGLVDG 169
LI NK D +A++ + + ++SL + + CS L G +G
Sbjct: 130 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189
Query: 170 LEWISQRV 177
W++Q +
Sbjct: 190 FRWMAQYI 197
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 20/188 (10%)
Query: 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKL---HLGE-VVTTHPTVGSNVEELVYKNI 61
S F+ K K++ +GLDNAGKTT L+ L LG+ V T HPT EEL +
Sbjct: 5 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGM 60
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
F +D+GG + R W Y + ++ ++D D R+ K+EL L+ E + + +
Sbjct: 61 TFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 120
Query: 122 LIFANKQDLKDAMTPAEITD------------ALSLHSIKNHDWHIQACSALTGDGLVDG 169
LI NK D +A++ + + ++SL + + CS L G +G
Sbjct: 121 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 180
Query: 170 LEWISQRV 177
W++Q +
Sbjct: 181 FRWMAQYI 188
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK---LLV 120
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK---LLV 120
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV 127
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 20 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 80 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV 136
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGI 162
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV 144
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGI 170
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 1 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 61 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV 117
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQE 72
+KII++G N GKT Y+ G T T+G + E + I+ + WD GQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 73 RLRTSWAT-YYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQ 128
R R S YYR HAV+ V D T+ A + +E + L D+ ++ NK
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR---ILVGNKC 146
Query: 129 DLKDAM 134
DL+ A+
Sbjct: 147 DLRSAI 152
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 17/146 (11%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK L + ++ T+G + + EL K I+ + W
Sbjct: 11 PEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ L+
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV 127
Query: 125 ANKQDLK-----DAMTPAEITDALSL 145
NK DL D T E D+L +
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + + T+G + + EL K ++ + WD GQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQD 129
R RT ++YYRG+H +I+V D TD+ + +K E+ R L+ L+ NK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKCD 124
Query: 130 LKD 132
LKD
Sbjct: 125 LKD 127
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + + T+G + + EL K ++ + WD GQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQD 129
R RT ++YYRG+H +I+V D TD+ + +K E+ R L+ L+ NK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKCD 124
Query: 130 LKD 132
LKD
Sbjct: 125 LKD 127
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + + T+G + + EL K ++ + WD GQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQD 129
R RT ++YYRG+H +I+V D TD+ + +K E+ R L+ L+ NK D
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKCD 137
Query: 130 LKD 132
LKD
Sbjct: 138 LKD 140
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + ++ T+G + + EL K I+ + WD GQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIFANKQDL 130
R RT ++YYRG H +IVV D TD+ + +K L + E++ L+ NK DL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLVGNKCDL 123
Query: 131 K-----DAMTPAEITDALSL 145
D T E D+L +
Sbjct: 124 TTKKVVDYTTAKEFADSLGI 143
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQE 72
+KII++G N GKT Y+ G T T+G + E + I+ + WD GQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 73 RLRTSWAT-YYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQ 128
R R S YYR HAV+ V D T+ A + +E + L D+ ++ NK
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR---ILVGNKC 137
Query: 129 DLKDAM 134
DL+ A+
Sbjct: 138 DLRSAI 143
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + L K ++ + W
Sbjct: 4 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D GQER RT ++YYRG H +I+V D TDR +K + + + +++ L+ N
Sbjct: 64 DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVK-QWIQEIDRYAMENVNKLLVGN 122
Query: 127 KQDL--KDAMTPAEITDALSLHSIK 149
K DL K +T E + H IK
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIK 147
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
K++++G GK+ L + ++ T+G + + EL K I+ + WD GQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIFANKQDLK 131
RT ++YYRG H +IVV D TD+ + +K L + E++ L+ NK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLVGNKCDLT 117
Query: 132 -----DAMTPAEITDALSL 145
D T E D+L +
Sbjct: 118 TKKVVDYTTAKEFADSLGI 136
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 14 PGKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAW 66
P DY K++++G GK+ L + ++ T+G + + EL K I+ + W
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIF 124
D GQER RT ++YYRG H +IVV D TD+ + +K L + E++ +V I
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIK 122
Query: 125 AN--KQDLKDAMTPAEITDALSL 145
+ + + D T E D+L +
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGI 145
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++I+G GK++ L + ++ T+G + + E+ + ++ + WD GQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73 RLRTSWATYYRGTHAVIVVIDST 95
R RT +TYYRGTH VIVV D T
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVT 92
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 13/173 (7%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K +++G GK+ L+ K T GS + + K ++ + WD GQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R+ +YYRG ++V D T R + + + L R+L +++ V+++ NK+DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 127
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAPS 183
DA E+T + + ++ SALTG+ + + ++++ K S
Sbjct: 128 -DA--DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNVEELVYK----NIRFEAWDVGGQ 71
+K+++VG GKT L + G + T TVG + V ++ + WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQD 129
ER R+ YYR HA++++ D T++A ++ L + HE QH V L + NK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVD 127
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 15 GKDY----KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEA 65
GK Y KI+++G GK+ L + + + T+G + + ++ K ++ +
Sbjct: 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125
WD GQER RT YYRG +I+V D TD + +K + F+ + + +L+
Sbjct: 74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVG 132
Query: 126 NKQDLKDAMTPAEITDALS 144
NK D++ + A+ +AL+
Sbjct: 133 NKSDMETRVVTADQGEALA 151
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE-ELVYKN---IRFEAWDVGGQE 72
+KI+I+G + GKT+ L++ TVG + + + +Y+N I+ + WD GQE
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG I++ D T+ + ++D ++ + ++ VL+ NK D++D
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMED 124
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + PT+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
KI+++G GK+ L + + + T+G + + ++ K ++ + WD GQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
RT YYRG +I+V D TD + +K + F+ + + +L+ NK D++
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 134 MTPAEITDALS 144
+ A+ +AL+
Sbjct: 128 VVTADQGEALA 138
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GKT L++ +T T+G + + EL K I+ + WD GQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGH--EDLQHSVVLIFANKQDL 130
R RT YYRG +++V D T+ +++ + + H D++ +I NK D+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK---MILGNKCDV 125
Query: 131 KD 132
D
Sbjct: 126 ND 127
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSN--VEELVYKNI--RFEAWDVGG 70
++ K+ ++G GK++ +++ +PT+G++ + + Y+N +F WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER R YYRG+ A I+V D T S +K+ + L H VV I NK DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL 122
Query: 131 KD 132
D
Sbjct: 123 TD 124
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + PT+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQERL 74
++++G GK+ L + ++ T+G + + EL K I+ + WD GQER
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL--LGHEDLQHSVVLIFANKQDL 130
RT ++YYRG H +IVV D TD+ + +K L + E++ L+ NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLVGNKCDL 115
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K +++G GK+ L+ K T GS + + K ++ + WD GQE
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R+ +YYRG ++V D T R + + + L R+L +++ V+++ NK+DL
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 128
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
DA E+T + + ++ SALTG+ + + ++++ K
Sbjct: 129 -DA--DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GKT L++ +T T+G + + EL K I+ + WD GQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGH--EDLQHSVVLIFANKQDL 130
R RT YYRG +++V D T+ +++ + + H D++ +I NK D+
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK---MILGNKCDV 123
Query: 131 KD 132
D
Sbjct: 124 ND 125
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
KI+++G GK+ L + + + T+G + + ++ K ++ + WD GQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
RT YYRG +I+V D TD + +K + F+ + + +L+ NK D++
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 134 MTPAEITDALS 144
+ A+ +AL+
Sbjct: 124 VVTADQGEALA 134
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 15 GKDY--KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE-ELVY---KNIRFEAWD 67
G DY K++++G + GKT+ L++ TVG + + + VY K I+ + WD
Sbjct: 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWD 77
Query: 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127
GQER RT YYRG +++ D ++ + ++D ++ + ++ V++ NK
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNK 136
Query: 128 QDLKDA-MTPAE 138
DL+D + PAE
Sbjct: 137 CDLEDERVVPAE 148
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
KI+++G GK+ L + + + T+G + + ++ K ++ + WD GQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
RT YYRG +I+V D TD + +K + F+ + + +L+ NK D +
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MTPAEITDALS 144
+ A+ +AL+
Sbjct: 124 VVTADQGEALA 134
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQER 73
KI+++G GK+ L + + + T+G + + ++ K ++ + WD GQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133
RT YYRG +I+V D TD + +K + F+ + + +L+ NK D +
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 134 MTPAEITDALS 144
+ A+ +AL+
Sbjct: 124 VVTADQGEALA 134
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K +++G GK+ L+ K T GS V + K ++ + WD GQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R+ +YYRG ++V D T R + + L R L ++ VV++ NK+DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI---VVILCGNKKDL 142
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAPS 183
E+T + + ++ SALTG+ + + ++ + K S
Sbjct: 143 D---PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSN--VEELVYKNI--RFEAWDVGG 70
++ K+ ++G GK++ +++ +PT+G++ + + Y+N +F WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
ER R YYRG+ A I+V D T S +K+ + L H VV I NK DL
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDL 123
Query: 131 KD 132
D
Sbjct: 124 TD 125
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVE-ELVY---KNIRFEAWDVGGQ 71
+K++I+G + GKT+ L++ + + T TVG + + + VY K ++ + WD GQ
Sbjct: 24 FKLLIIGNSSVGKTSFLFR-YADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
ER RT YYRG I++ D T+ + ++D ++ + V+L+ NK D++
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV-GNKCDME 141
Query: 132 DA-MTPAE 138
+ + P E
Sbjct: 142 EERVVPTE 149
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K +++G GK+ L+ K T GS + + K ++ + WD G E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R+ +YYRG ++V D T R + + + L R+L +++ V+++ NK+DL
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 125
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
DA E+T + + ++ SALTG+ + + ++++ K
Sbjct: 126 -DA--DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L++ + + P G+ + E+ + I+ + WD GQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R +YYRG ++V D T R+ + + L R L + + +V+++ NK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNKADL 132
Query: 131 K 131
+
Sbjct: 133 E 133
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG----SNVEELVYKNIRFEAWDVGGQ 71
+ K++++G AGK++ + + + V T+G S + ++FE WD GQ
Sbjct: 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD--ELFRLLGHEDLQHSVVLIFANKQD 129
ER + YYRG A I+V D T++A K + + G+ ++ V+ + NK D
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM---VMALAGNKSD 128
Query: 130 LKDA 133
L DA
Sbjct: 129 LLDA 132
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE-ELVYKN---IRFEAWDVGGQE 72
+KI+I+G + GKT+ L++ TVG + + + +Y+N I+ + WD G E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R RT YYRG I+ D T+ + ++D ++ + ++ VL+ NK D +D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDXED 127
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFA 125
GQE+ YY I++ D T R + + +L R+ ++ +++
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCG 126
Query: 126 NKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 127 NKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 175
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K+++VG + GKT + + G T+G + E+ K ++ + WD GQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQD 129
R RT +YYR + I+ D T R+ + +++ + G +Q L+ NK D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ----LLIGNKSD 145
Query: 130 LKDAMTPAEITDALSL 145
L + + + +A SL
Sbjct: 146 LSE-LREVSLAEAQSL 160
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDVGGQE 72
+K+++VG GKTT + + GE + T+G V LV+ I+F WD GQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQ 128
+ YY I++ D T R + + H DL ++ +++ NK
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLCGNKV 117
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 118 DIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 163
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
GQE+ YY I+ D T R + + H DL ++ +++
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSN--VEELVYKN---IRFEAWDVGGQ 71
+KI+++G GK+ L + E + + T+G + + KN I+ + WD GQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
ER R + YYRG ++V D T + ++ L L + D + V+L+ NK DLK
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLVGNKSDLK 126
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFA 125
GQE+ YY I++ D T R + + +L R+ ++ +++
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCG 126
Query: 126 NKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 127 NKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 175
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 9 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 68
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
G E+ YY I++ D T R + + H DL ++ +++
Sbjct: 69 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 122
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 123 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 172
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 3 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 62
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
G E+ YY I++ D T R + + H DL ++ +++
Sbjct: 63 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 116
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 117 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 126
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L++ + + P G+ + E+ + I+ + WD GQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL--FRLLGHEDLQHSVVLIFANKQDL 130
R R +YYRG ++V D T R+ + + L R L + + +V+++ NK DL
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN---TVIILIGNKADL 147
Query: 131 K 131
+
Sbjct: 148 E 148
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN----IRFEAWDV 68
P +K+++VG GKTT + + GE + T+G V LV+ I+F WD
Sbjct: 7 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIF 124
G E+ YY I++ D T R + + H DL ++ +++
Sbjct: 67 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN------WHRDLVRVCENIPIVLC 120
Query: 125 ANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
NK D+KD A+ ++ H KN ++ SA + W+++++ G
Sbjct: 121 GNKVDIKDRKVKAK---SIVFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLIG 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG----SNVEELVYKNIRFEAWDVGGQE 72
+KI+++G GK+ L + E + + T+G + E+ K I+ + WD GQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R R + YYRG ++V D + + L L + D +V LI NK DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI-GNKSDL 130
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + IR + WD
Sbjct: 3 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 62
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTD 96
GQER R+ +Y R + A +VV D T+
Sbjct: 63 AGQERFRSLIPSYIRDSAAAVVVYDITN 90
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSN--VEELVYKN--IRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ + + + ++FE WD GQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFA-NKQ 128
R + YYRG A IVV D T++ AR EL R S+V+ A NK
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-----QASPSIVIALAGNKA 123
Query: 129 DLKD 132
DL +
Sbjct: 124 DLAN 127
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD GQE
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+++ NK DL+
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR 147
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYKNI-------RFEAWDVGG 70
KI+I+G GK++ L + T P + + + + K I + WD G
Sbjct: 17 KILIIGESGVGKSSLLLRFTDD---TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 73
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
QER RT +YYRG VI+V D T R + + L L + V + NK D
Sbjct: 74 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDK 133
Query: 131 KDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
++ E+ L + H SA T DG+ E + +++
Sbjct: 134 EN----REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD GQE
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+++ NK DL+
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR 138
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L + H G+ + + K I+ + WD GQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS----VVLIFANKQ 128
R+ +YYRG ++V D T R + + L + QHS V+++ NK
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-----EDARQHSSSNMVIMLIGNKS 136
Query: 129 DLK 131
DL+
Sbjct: 137 DLE 139
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVE----ELVYKNIRFEAWDVGGQER 73
++II+G GKT+ + + TVG + + EL K IR + WD GQER
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL---FRLLGHEDLQHSVVLIFANKQDL 130
+ + YYR +I+V D T + D+L +++ + + +L+ NK D
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETF----DDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 131 KDAMTPAEIT 140
+ T EIT
Sbjct: 144 E---TDREIT 150
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 125
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKL---HLGEVVTTHPTVGSNVEELVYKNI-------RFEA 65
++ K+ ++G GK++ + + H ++ PT+G++ + K + +F
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS--PTIGAS---FMTKTVPCGNELHKFLI 76
Query: 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125
WD GQER + YYRG+ A ++V D T + +K + L H ++ V+ I
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAG 135
Query: 126 NKQDLKD 132
NK DL D
Sbjct: 136 NKCDLSD 142
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-----VTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T + L ++FE WD GQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIVIALAGNKADL 122
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN-----IRFEAWDVGGQ 71
YKI ++G GKTT + ++ G + TVG+ + + + I+F WD GQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMK---DELFRLLGHEDLQHSVVLIFANKQ 128
E+ YY G I+ D T R + E ++G+E + +++ ANK
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE----APIVVCANKI 127
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163
D+K+ +I+ L + +K ++ SA T
Sbjct: 128 DIKNRQ---KISKKLVMEVLKGKNYEYFEISAKTA 159
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD GQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIVIALAGNKADL 120
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD GQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+++ NK DL+
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR 123
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEE----LVYKNIRFEAWDVGGQE 72
+K++++G GKT L + E + T+G L ++ + WD G E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R + YYRG ++V D T ++++ L L H + VV++ NK DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQ 144
Query: 133 AM-TPAE 138
A P E
Sbjct: 145 AREVPTE 151
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEE----LVYKNIRFEAWDVGGQE 72
+K++++G GKT L + E + T+G L ++ + WD G E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R + YYRG ++V D T ++++ L L H + VV++ NK DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT-IVVMLVGNKSDLSQ 129
Query: 133 AM-TPAE 138
A P E
Sbjct: 130 AREVPTE 136
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEEL-VYKN---IRFEAWDVGGQE 72
+K+++VG GKTT + + GE + T+G V L Y N I+F+ WD G E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQ 128
+ YY I++ D T R + + H DL ++ +++ NK
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN------WHRDLVRVCENIPIVLCGNKV 118
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
D+K+ A+ ++ H KN ++ SA + W+++++ G
Sbjct: 119 DVKERKVKAK---TITFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLAG 164
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEEL-VYKN---IRFEAWDVGGQE 72
+K+++VG GKTT + + GE + T+G V L Y N I+F+ WD G E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQ 128
+ YY I++ D T R + + H DL ++ +++ NK
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN------WHRDLVRVCENIPIVLCGNKV 119
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
D+K+ A+ ++ H KN ++ SA + W+++++ G
Sbjct: 120 DVKERKVKAK---TITFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLAG 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GKT+ + K + + T + + + K + WD GQE
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANKQD 129
R YYR ++ I+V D TD +K+ EL ++LG+E + I NK D
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 136
Query: 130 LK 131
L+
Sbjct: 137 LE 138
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 18 YKIIIVGLDNAGKTTTLY-----KLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
+K++++G GKT+ + K + + T + + + K + WD GQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANKQD 129
R YYR ++ I+V D TD +K+ EL ++LG+E + I NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
Query: 130 LK 131
L+
Sbjct: 123 LE 124
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP-----TVGSNVEELVYKNIRFEAWDVGGQE 72
+K II+G GK+ L + H G+ + + K I+ + WD GQE
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R+ +YYRG ++V D T R + + L H + + V+++ NK DL+
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-SNMVIMLIGNKSDLE 128
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEEL-VYKN---IRFEAWDVGGQE 72
+K+++VG GKTT + + GE + T+G V L Y N I+F+ WD G E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQ 128
+ YY I++ D T R + + H DL ++ +++ NK
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN------WHRDLVRVCENIPIVLCGNKV 126
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179
D+K+ A+ ++ H KN ++ SA + W+++++ G
Sbjct: 127 DVKERKVKAK---TITFHRKKNLQYY--DISAKSNYNFEKPFLWLARKLAG 172
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG----SNVEELVYKNIRFEAWDVGGQE 72
+KI+++G GK+ L + E + + T+G + E+ K I+ + WD G E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R + YYRG ++V D + + L L + D +V LI NK DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI-GNKSDL-- 127
Query: 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
A A TD +++N + SAL D +
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTE-TSALNSDNV 160
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GKT+ + + + H T+G++ + K + WD GQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANKQD 129
R YYR ++ I+V D TD +K+ EL ++LG+E + I NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
Query: 130 LK 131
L+
Sbjct: 123 LE 124
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + +R + WD
Sbjct: 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTD 96
GQER R+ +Y R + +VV D T+
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITN 98
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSN-VEELVYKN---IRFEAWDVGGQE 72
YK++ +G GKT+ + + + T+G + + + +Y + +R + WD GQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +Y R + A IVV D T+R + +L +E + ++ + NK DL D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVIIALVGNKTDLGD 120
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD G E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV-KELQRQASPNIVIALSGNKADLAN 124
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + IR + WD
Sbjct: 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 69
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTD 96
G ER R+ +Y R + A +VV D T+
Sbjct: 70 AGLERFRSLIPSYIRDSAAAVVVYDITN 97
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKL---HLGEVVTTHPTVGSNVEELVYKNIR--FEAWDVGG 70
K YKI++ G GK++ L +L E ++ V ++ L+ R + WD G
Sbjct: 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV--LIFANKQ 128
QER R+ +Y+R V+++ D T +++ + + ED H V ++ NK
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI---EDAAHETVPIMLVGNKA 143
Query: 129 DLKD 132
D++D
Sbjct: 144 DIRD 147
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD G E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+++ NK DL+
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR 147
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+KI+++G GKT + + G T+G + E+ + ++ + WD GQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
R R+ +YYR +A+I+ D T + E R + + ++ NK DL +
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAE 145
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD G E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+++ NK DL+
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR 126
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGS----NVEELVYKNIRFEAWDVGGQE 72
+K++++G GK++ + + G+ T+G+ L ++FE WD G E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
R + YYRG A IVV D T+ + K+ + + L + + V+ + NK DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWV-KELQRQASPNIVIALAGNKADL 122
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 33/148 (22%)
Query: 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID------------ST 95
T G + + V K+I F DVGGQ R W +++ I V +T
Sbjct: 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNT 207
Query: 96 DR--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDL-KDAMTPAEITDALSLHSIKNHD 152
R I++ KD + +E L+ +V LIF NK DL ++ +T + ++
Sbjct: 208 SRLTESIAVFKD----IXTNEFLKGAVKLIFLNKXDLFEEKLTKVPLNTIFPEYT----- 258
Query: 153 WHIQACSALTGDGLVDGLEWISQRVTGK 180
GD V G ++I Q TGK
Sbjct: 259 ---------GGDNAVXGAQYIQQLFTGK 277
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN--VEELVYKN--IRFEAWDVGGQE 72
K+II+G GKT+ L ++ + + T+G++ +E++ + + + WD GQE
Sbjct: 10 KVIILGDSGVGKTS-LMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIM---KDELFRLLGHEDLQHSVVLIFANKQD 129
R ++ +YRG ++V D T + +DE D ++ ++ NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 130 LKD 132
L++
Sbjct: 129 LEN 131
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSN-VEELVYKN---IRFEAWDVGGQER 73
K++++G GK++ + + + PT+G+ + + V N ++FE WD GQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 LRTSWATYYRGTHAVIVVIDST 95
+ YYR A +VV D T
Sbjct: 65 FASLAPXYYRNAQAALVVYDVT 86
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 44 TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIM 103
T PT G +K++ F+ +DVGGQ R W + G A+I + +D +
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 104 KDELFRLLGHEDLQ------------HSVVLIFANKQDL 130
+E+ R+ HE ++ + +++F NK+DL
Sbjct: 236 DEEMNRM--HESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 42 VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS 101
++ PT G + +K++ F+ +DVGGQ R W + G A+I + +D ++
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVL 220
Query: 102 IMKDELFRLLGHEDLQ------------HSVVLIFANKQDL 130
+ + R+ HE ++ + +++F NK+DL
Sbjct: 221 MEDRQTNRM--HESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEE--LVYK------------NIRF 63
K + +G GKT+ LY+ G+ + TVG + E +VY+ I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD G ER R+ ++R +++ D T+ +++ + +L H ++ +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 124 FANKQDLKDAMTPAE 138
NK DL+D E
Sbjct: 133 CGNKSDLEDQRAVKE 147
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN--VEELVYKN--IRFEAWDVGGQE 72
K+II+G GKT+ L ++ + + T+G++ +E++ + + + WD GQE
Sbjct: 10 KVIILGDSGVGKTS-LMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIM---KDELFRLLGHEDLQHSVVLIFANKQD 129
R ++ +YRG ++V D T + +DE D ++ ++ NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 130 LKD 132
L++
Sbjct: 129 LEN 131
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDVGGQE 72
+K++ +G + GKT+ + + T+ T+G S L + +R + WD GQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RLRTSWATYYRGTHAVIVVIDSTD 96
R R+ +Y R + +VV D T+
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITN 86
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDVGGQE 72
+K++ +G + GKT+ + + T+ T+G S L + +R + WD GQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RLRTSWATYYRGTHAVIVVIDSTD 96
R R+ +Y R + +VV D T+
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITN 85
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD G E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+ + NK DL+
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIXLVGNKSDLR 129
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID-----STDRAR 99
NI+F+ WD GQER + YYRG IVV D + DRA+
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE 72
+K++++G GK+ L + E + + T+G ++ K I+ + WD G E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
R R + YYRG ++V D ++ L L H D + V+ + NK DL+
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIXLVGNKSDLR 123
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + +R + WD
Sbjct: 3 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 62
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTD 96
G ER R+ +Y R + +VV D T+
Sbjct: 63 AGLERFRSLIPSYIRDSTVAVVVYDITN 90
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHP-TVGSNVEELVYK----NIRFEAWDVGGQER 73
K+++VG GK++ + + G + T+G + E + ++R WD GQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 74 LRTSWATYYRGTHAVIVVIDSTDR 97
YYRG A ++V +TDR
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDR 90
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN--VEELVYKN--IRFEAWDVGGQE 72
K+II+G GKT+ L ++ + + T+G++ +E++ + + + WD GQE
Sbjct: 10 KVIILGDSGVGKTS-LMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIM---KDELFRLLGHEDLQHSVVLIFANKQD 129
R ++ +YRG ++V D T + +DE D ++ ++ NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 130 LKD 132
++
Sbjct: 129 FEN 131
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG----SNVEELVYKNIRFEAWDV 68
P + +K++ +G + GKT+ + + T+ T+G S L + +R + WD
Sbjct: 13 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 69 GGQERLRTSWATYYRGTHAVIVVIDSTD 96
G ER R+ +Y R + +VV D T+
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITN 100
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEE--LVYK------------NIRF 63
K++ +G GKTT LY+ + TVG + E +VY +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD GQER R+ ++R +++ D T + +++ + +L + ++ +++
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 124 FANKQDLKD 132
NK DL D
Sbjct: 147 IGNKADLPD 155
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVYKNIRFEA-------WDVG 69
+KII++G GK++ + + + + T+G E + K++ + WD
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGV---EFLNKDLEVDGHFVTMQIWDTA 68
Query: 70 GQERLRTSWATYYRGTHAVIV---VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQER R+ +YRG+ ++ V DS +S K E ++ + +I N
Sbjct: 69 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 128
Query: 127 KQDLKDAMTPAEITDA 142
K D+K+ E A
Sbjct: 129 KTDIKERQVSTEEAQA 144
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGE---VVTTHPTVGSNV--EELVYKNIRFEAWDVGGQER 73
+++IVG N GK+T L +L L E +VT P +V EE+V + I F D G R
Sbjct: 245 RMVIVGKPNVGKSTLLNRL-LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-R 302
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARI-----SIMKDELFRLLGHEDLQHSVVLIFANKQ 128
T+ G + I+ D S + +E ++L E +++ L+ NK
Sbjct: 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL--ERIKNKRYLVVINKV 360
Query: 129 DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
D+ + + EI + L D H+ SAL G+GL
Sbjct: 361 DVVEKINEEEIKNKLG------TDRHMVKISALKGEGL 392
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 19 KIIIVGLDNAGKTTTL-----------YKLHLG-EVVTTHPTVGSNVEELVYKNIRFEAW 66
K+II+G GKT+ + YK +G + +T TV + K + W
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD------KVATMQVW 63
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV---LI 123
D GQER ++ +YRG ++V D T+ + +K L H ++ +I
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 124 FANKQDLKDA 133
NK D +++
Sbjct: 124 LGNKIDAEES 133
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL 107
T G + +K++ F +DVGGQ R W + G A+I + +D + +E+
Sbjct: 152 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 211
Query: 108 FRLLGHEDLQ------------HSVVLIFANKQDL 130
R+ HE ++ + +++F NK+DL
Sbjct: 212 NRM--HESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN--VEELVYKN--IRFEAWDVGGQE 72
K+II+G GKT+ L ++ + + T+G++ +E++ + + + WD G E
Sbjct: 10 KVIILGDSGVGKTS-LMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIM---KDELFRLLGHEDLQHSVVLIFANKQD 129
R ++ +YRG ++V D T + +DE D ++ ++ NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 130 LKD 132
L++
Sbjct: 129 LEN 131
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 191 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 248
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 249 MKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 163 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 220
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 221 MKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 195 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 252
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 253 MKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 189 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 246
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 247 MKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 160 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 217
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 218 MKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 164 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 221
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 222 MKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 222
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 223 MKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 165 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 222
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 223 MKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 222
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 223 MKLFDSICNNKWFTETSIILFLNKKDL 249
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 162 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 219
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 220 MKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 158 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 215
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 216 MKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 159 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 216
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 217 MKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 160 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 217
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 218 MKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 245
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 246 MKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 163 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 220
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 221 MKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 158 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 215
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 216 MKLFDSICNNKWFTETSIILFLNKKDL 242
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 158 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 215
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 216 MKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 157 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 214
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 215 MKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 188 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 245
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 246 MKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL 107
T G + +K++ F +DVGGQ R W + G A+I + +D + +E+
Sbjct: 183 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 242
Query: 108 FRLLGHEDLQHSV----------VLIFANKQDL 130
R+ L +S+ +++F NK+DL
Sbjct: 243 NRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGGQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 188 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 245
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 246 MKLFDSICNNKWFTETSIILFLNKKDL 272
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV-YKNIRF--EAWDVGGQ 71
K KI++VG GKT L GE+ T + PTV N ++ YKN F WD GQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDR 97
E Y + V++ +R
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNR 107
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV-YKNIRF--EAWDVGGQ 71
K KI++VG GKT L GE+ T + PTV N ++ YKN F WD GQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDR 97
E Y + V++ +R
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNR 106
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVYKNIRFEA-------WDVG 69
+K+I++G GK++ + + + T T+G E + K++ + WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV---EFLNKDLEVDGHFVTMQIWDTA 64
Query: 70 GQERLRTSWATYYRGTHAVIV---VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQER R+ +YRG+ ++ V DS +S K E ++ + +I N
Sbjct: 65 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
K D+ + E A N D+ SA + E +RV
Sbjct: 125 KIDISERQVSTEEAQAWCRD---NGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVYKNIRFEA-------WDVG 69
+K+I++G GK++ + + + T T+G E + K++ + WD
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV---EFLNKDLEVDGHFVTMQIWDTA 66
Query: 70 GQERLRTSWATYYRGTHAVIV---VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
GQER R+ +YRG+ ++ V DS +S K E ++ + +I N
Sbjct: 67 GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 126
Query: 127 KQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
K D+ + E A N D+ SA + E +RV
Sbjct: 127 KIDISERQVSTEEAQAWCRD---NGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 19 KIIIVGLDNAGKTTTLYK---------------LHLGEVVTTHPTVGSNVEELVYKNIRF 63
K++ +G GKTT LY+ + E + T G++ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD G ER R+ ++R +++ D T + +++ + +L + ++ +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 124 FANKQDLKD 132
NK DL D
Sbjct: 133 IGNKADLPD 141
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIM---KDELFRLLGHEDLQ 117
+ + WD GQER ++ +YRG ++ DR + + E +D +
Sbjct: 56 VTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPE 115
Query: 118 HSVVLIFANKQDLKDAMTPAE 138
H ++ NK D +D E
Sbjct: 116 HFPFVVLGNKVDKEDRQVTTE 136
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 19 KIIIVGLDNAGKTTTLYK---------------LHLGEVVTTHPTVGSNVEELVYKNIRF 63
K++ +G GKTT LY+ + E + T G++ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD G ER R+ ++R +++ D T + +++ + +L + ++ +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 124 FANKQDLKD 132
NK DL D
Sbjct: 133 IGNKADLPD 141
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DV GQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 189 FTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 246
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 247 MKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVG Q R W + G A+I + +D + +E+ R+ HE
Sbjct: 188 FTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 245
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 246 MKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL 107
T G + +K++ F +DVGGQ R W + G +I + + + + DE+
Sbjct: 151 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEV 210
Query: 108 FRL----------LGHEDLQHSVVLIFANKQDL 130
R+ H + +++F NK+D+
Sbjct: 211 NRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DV GQ R W + G A+I + +D + +E+ R+ HE
Sbjct: 189 FTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 246
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 247 MKLFDSICNNKCFTDTSIILFLNKKDL 273
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 55 ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHE 114
+ +K++ F +DVGGQ R W + G A+I + +D + +E R
Sbjct: 184 QFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESX 243
Query: 115 DLQHSV----------VLIFANKQDL 130
L S+ +++F NK+DL
Sbjct: 244 KLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI------------DSTDRARISIM 103
+KN+ F +DVGGQ R W + A+I + ++T+R S+M
Sbjct: 169 FTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLM 228
Query: 104 KDELF-RLLGHEDLQHSVVLIFANKQDL 130
LF + ++ + +++F NK+DL
Sbjct: 229 ---LFDSICNNKFFIDTSIILFLNKKDL 253
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTT----TLYKLHLGEVV---TTHPTVGSNVEELVYKNIRF 63
+ F G +I+++GL +GK++ +K+ E + +T+ ++ + N F
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN--F 71
Query: 64 EAWDVGGQERLRTSWATY---YRGTHAVIVVIDSTD 96
+ WD GQ Y +RGT A+I VID+ D
Sbjct: 72 QIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 56 LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED 115
+K++ F+ +DVGG R W + G A+I + +D + +E+ R+ HE
Sbjct: 188 FTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM--HES 245
Query: 116 LQ------------HSVVLIFANKQDL 130
++ + +++F NK+DL
Sbjct: 246 MKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KIIIVGLDNAGKTTTLYK---------------LHLGEVVTTHPTVGSNVEELVYKNIRF 63
K++ +G GKTT LY+ + E + T G++ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD G ER R+ ++R ++ D T + +++ +L + ++ +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 124 FANKQDLKD 132
NK DL D
Sbjct: 133 IGNKADLPD 141
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 19 KIIIVGLDNAGKTTTLYK---------------LHLGEVVTTHPTVGSNVEELVYKNIRF 63
K++ +G GKTT LY+ + E + T G++ +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
+ WD G ER R+ ++R ++ D T + +++ +L + ++ +++
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 124 FANKQDLKD 132
NK DL D
Sbjct: 133 IGNKADLPD 141
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD--ELFRLLGHEDLQ 117
N+ + WD+GGQ Y G V++V D T+ ++D + + + E
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET 114
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
+V + NK DL+ T I L + + + SA TGD + + ++ +
Sbjct: 115 QPLVALVGNKIDLEHMRT---IKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
Query: 178 TG 179
G
Sbjct: 172 LG 173
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYKNIRFEAWDVGGQER 73
G+ K + LD G+ Y +++ VE + V K I F+ DVGGQ
Sbjct: 154 GESVKYFLDNLDRIGQLN--YFPSKQDILLARKATKGIVEHDFVIKKIPFKMVDVGGQRS 211
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDE----------LFRLLGHEDLQHSV-VL 122
R W + G +++ ++ S++ ++ +M+D +F + + L +V ++
Sbjct: 212 QRQKWFQCFDGITSILFMVSSSEYDQV-LMEDRRTNRLVESMNIFETIVNNKLFFNVSII 270
Query: 123 IFANKQDL 130
+F NK DL
Sbjct: 271 LFLNKMDL 278
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS 101
++ PT G + + KN+ F+ DVGGQ R W + +++ ++ S++ ++
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 102 IMKDELFRLLGHEDLQHSVV----------LIFANKQDL 130
+ + RL ++ ++V ++F NK DL
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 42 VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS 101
++ PT G + + KN+ F+ DVGGQ R W + +++ ++ S++ ++
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 102 IMKDELFRLLGHEDLQHSVV----------LIFANKQDL 130
+ + RL ++ ++V ++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ F +DVGGQ R W + A+I V+ S+ + ++ RL +L S+
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 121 ----------VLIFANKQDL 130
V++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ F +DVGGQ R W + A+I V+ S+ + ++ RL +L S+
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 121 ----------VLIFANKQDL 130
V++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ F +DVGGQ R W + A+I V+ S+ + ++ RL +L S+
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 121 ----------VLIFANKQDL 130
V++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ F +DVGGQ R W + A+I V+ S+ + ++ RL +L S+
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 121 ----------VLIFANKQDL 130
V++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120
+ F +DVGGQ R W + A+I V+ S+ + ++ RL +L S+
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 121 ----------VLIFANKQDL 130
V++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 17/171 (9%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAW 66
+ F G+ K ++VG GKT L + + PTV N V K + W
Sbjct: 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLW 83
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D GQE Y T ++ A ++ + + + H ++L+
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GT 142
Query: 127 KQDLKD-----------AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
K DL+D +TP L++ +++ CSALT GL
Sbjct: 143 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGL 192
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT + + V + ++ + D GQE
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI----------VVIDSTD 96
PT G +++ F DVGGQ R W + +++ V+++S +
Sbjct: 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 212
Query: 97 RARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
R+ K LFR ++ + Q+S V++F NK+DL
Sbjct: 213 ENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT + + V + ++ + D GQE
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI----------VVIDSTD 96
PT G +++ F DVGGQ R W + +++ V+++S +
Sbjct: 181 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 240
Query: 97 RARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
R+ K LFR ++ + Q+S V++F NK+DL
Sbjct: 241 ENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI----------VVIDSTD 96
PT G +++ F DVGGQ R W + +++ V+++S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 97 RARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
R+ K LFR ++ + Q+S V++F NK+DL
Sbjct: 239 ENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 17/171 (9%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAW 66
+ F G+ K ++VG GKT L + PTV N V K + W
Sbjct: 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 83
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D GQE Y T ++ A ++ + + + H ++L+
Sbjct: 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GT 142
Query: 127 KQDLKD-----------AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
K DL+D +TP L++ +++ CSALT GL
Sbjct: 143 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGL 192
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI----------VVIDSTD 96
PT G +++ F DVGGQ R W + +++ V+++S +
Sbjct: 173 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 97 RARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
R+ K LFR ++ + Q+S V++F NK+DL
Sbjct: 233 ENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT + + V + ++ + D GQE
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT + + V + ++ + D GQE
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHE-DLQ 117
RF + V GQ S RG ++ V DS RA M++ L + L
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
++I NK+DL DA+ P E+ A+ K + + A G G+ + L+ +S+ V
Sbjct: 135 DVPIVIQVNKRDLPDAL-PVEMVRAVVDPEGK---FPVLEAVATEGKGVFETLKEVSRLV 190
Query: 178 TGK 180
+
Sbjct: 191 LAR 193
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI----------VVIDSTD 96
PT G +++ F DVGGQ R W + +++ V+++S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 97 RARISIMKDELFR-LLGHEDLQHSVVLIFANKQDL 130
R+ K LFR ++ + Q+S V++F NK+DL
Sbjct: 239 ENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAW---DVGGQERLRT 76
++ VGL ++GKT +L G+ T ++ + N R + D+ G E LR
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 77 SWATYYRGT-HAVIVVIDSTDRAR-ISIMKDELFR-LLGHEDLQHSVVLIFA-NKQDLKD 132
++ + AV+ V+DS R + + + L++ L+ L++S L+ A NKQD+
Sbjct: 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 AMTPAEITDAL 143
A + I L
Sbjct: 130 AKSAKLIQQQL 140
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 17/171 (9%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAW 66
+ F G+ K ++VG GKT L + PTV N V K + W
Sbjct: 7 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLW 66
Query: 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
D GQE Y T ++ A ++ + + + H ++L+
Sbjct: 67 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV-GT 125
Query: 127 KQDLKD-----------AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
K DL+D +TP L++ +++ CSALT GL
Sbjct: 126 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGL 175
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 19/173 (10%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE---ELVYKNIRFEAWDVGGQERL 74
K++IVG GKT L + + PTV N E+ K + WD GQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 75 RTSWATYYRGTHAVIVV--IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
+ Y T +++ IDS D + + ++ + H ++L+ NK+DL++
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILV-GNKKDLRN 123
Query: 133 AMTPAEITDALSLHSIKNHDWHIQA----------CSALTGDGLVDGLEWISQ 175
A + +K + A CSA T DG+ + E ++
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV---YKNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ + + V + E D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ Y + +V T ++ + ++D ++L +D + +++ NK DL+
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 D 132
D
Sbjct: 122 D 122
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 19 KIIIVGLDNAGKTT----TLYKLHLGEVV---TTHPTVGSNVEELVYKNIRFEAWDVGGQ 71
+I++ GL +GK++ +K E + +T+ +V + N F+ WD GQ
Sbjct: 6 RILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVN--FQIWDFPGQ 63
Query: 72 ERLRTSWATY---YRGTHAVIVVIDSTD 96
Y +RGT A+I VIDS D
Sbjct: 64 IDFFDPTFDYEXIFRGTGALIFVIDSQD 91
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV---YKNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ + + V + E D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ Y + +V T ++ + ++D ++L +D + +++ NK DL+
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 D 132
D
Sbjct: 122 D 122
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 42 VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARIS 101
++ PT G + + KN+ F+ DVGG R W + +++ ++ S++ ++
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 102 IMKDELFRLLGHEDLQHSVV----------LIFANKQDL 130
+ + RL ++ ++V ++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN---IRFEAWDVGGQERL 74
K + VG GKT L T + PTV N V N + WD GQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
YRG I+ +A + + L H +VL+ K DL+D
Sbjct: 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV-GTKLDLRD 126
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 142 ALSLH-SIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
A LH ++ NH W +Q A T G ++G+EWI + V K
Sbjct: 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV---YKNIRFEAWDVGGQERLRT 76
III G N+GKT+ L L V PTV S E L Y D G +LR
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRY 106
Query: 77 SWATYYRG----THAVIVVIDST-DRARISIMKDELFRLLG--HEDLQHSV-VLIFANKQ 128
+ Y + +I ++DST D +++ + L +L ++ + +LI NK
Sbjct: 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166
Query: 129 DLKDAMTPAEITDAL 143
+L A P++I DAL
Sbjct: 167 ELFTARPPSKIKDAL 181
>pdb|3L82|B Chain B, X-Ray Crystal Structure Of Trf1 And Fbx4 Complex
Length = 227
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 142 ALSLH-SIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180
A LH ++ NH W +Q A T G ++G+EWI + V K
Sbjct: 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELV---YKNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ + + V + E D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ Y + +V T ++ + ++D ++L +D +++ NK DL+
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 132 D 132
D
Sbjct: 122 D 122
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKL----HLGEVVTTHPTVGSNVEELVY---KNIRF 63
+ F G+ K ++VG GKT L GE + PTV N V K +
Sbjct: 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNL 80
Query: 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLI 123
WD G E Y T ++ A ++ + + + H ++L+
Sbjct: 81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 124 FANKQDLKD-----------AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166
K DL+D +TP L++ +++ CSALT GL
Sbjct: 141 -GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE-CSALTQRGL 192
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHE-DLQ 117
RF + V GQ S RG ++ V DS RA ++ L + L
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLD 134
Query: 118 HSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177
++I NK+DL DA+ P E A+ K + + A G G+ + L+ +S+ V
Sbjct: 135 DVPIVIQVNKRDLPDAL-PVEXVRAVVDPEGK---FPVLEAVATEGKGVFETLKEVSRLV 190
Query: 178 TGK 180
+
Sbjct: 191 LAR 193
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYKNIRFEAWDVGGQERLRTS 77
III G N+GKT+ L L V PTV S + Y D G +LR
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK 71
Query: 78 WATYYRG----THAVIVVIDST-DRARISIMKDELFRLLG--HEDLQHSV-VLIFANKQD 129
+ Y + +I ++DST D +++ + L +L ++ + +LI NK +
Sbjct: 72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 131
Query: 130 LKDAMTPAEITDAL 143
L A P++I DAL
Sbjct: 132 LFTARPPSKIKDAL 145
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQER 73
+K+I+VG GK+ + E V + PT + + V + ++ + D G E
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
Y+R + V T+ + D ++L ++ ++ L+ NK DL+D
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQ 71
++YK++++G GK+ + G V + PT+ + + V + E D G
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131
E+ Y + +V T ++ + ++D ++L +D +++ NK DL+
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 132 D 132
D
Sbjct: 124 D 124
>pdb|3SUM|A Chain A, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|B Chain B, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|C Chain C, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
pdb|3SUM|D Chain D, Crystal Structure Of Cerato-Platanin 5 From M. Perniciosa
(Mpcp5)
Length = 136
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLL 111
Q + W Y+G HA + V+D + A + + +L + L
Sbjct: 57 QTECGSCWKLRYKGNHAFVTVVDRVEEANLFVGGTDLVKNL 97
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE---ELVYKNIRFEAWDVGGQERL 74
KI++VG GKT L+ + PTV N E+ + I WD G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLG--HEDLQHSVVLIFANKQDLKD 132
Y + AV++ D + R + L + G E ++ +L+ K DL+
Sbjct: 90 DNVRPLSYPDSDAVLICFDIS---RPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR- 145
Query: 133 AMTPAEITDALSLHSIKNH 151
TD +L + NH
Sbjct: 146 -------TDVSTLVELSNH 157
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE---ELVYKNIRFEAWDVGGQERL 74
KI++VG GKT L+ + PTV N E+ + I WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLG--HEDLQHSVVLIFANKQDLKD 132
Y + AV++ D +R + L + G E ++ +L+ K DL+
Sbjct: 69 DNVRPLSYPDSDAVLICFDI---SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR- 124
Query: 133 AMTPAEITDALSLHSIKNH 151
TD +L + NH
Sbjct: 125 -------TDVSTLVELSNH 136
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV 121
R + D GQE Y R H ++V DR + + ++L +D V
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 122 LIFANKQDLK 131
++ NK DL+
Sbjct: 118 VLVGNKADLE 127
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVE---ELVYKNIRFEAWDVGGQERL 74
KI++VG GKT L+ + PTV N E+ + I WD G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLG--HEDLQHSVVLIFANKQDLKD 132
Y + AV++ D + R + L + G E ++ +L+ K DL+
Sbjct: 85 DNVRPLSYPDSDAVLICFDIS---RPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR- 140
Query: 133 AMTPAEITDALSLHSIKNH 151
TD +L + NH
Sbjct: 141 -------TDVSTLVELSNH 152
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE 72
+YK+++VG D GK+ +L V + PT+ + + V + + D GQE
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 73 RLRTSWATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
Y R G V + ++ I ++++ R+ ED+ +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP---MVLVGNKSD 120
Query: 130 L 130
L
Sbjct: 121 L 121
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQERL 74
K + VG GKT L T + PTV N V + WD GQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDY 67
Query: 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132
YRG I+ +A + + L H ++L+ K DL+D
Sbjct: 68 NRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILV-GTKLDLRD 124
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 63 FEAWDVGGQERLRTSWATYYRGTHAVIVV-----IDST---DRARISIMK-DELFR-LLG 112
+ +DVGGQ R W + G AVI D T D + +M+ ELF +L
Sbjct: 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 244
Query: 113 HEDLQHSVVLIFANKQDL 130
+ + ++F NK D+
Sbjct: 245 QPCFEKTSFMLFLNKFDI 262
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 12/135 (8%)
Query: 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVY---KNIRFEAWDVGGQER 73
K + VG GKT L + G T PTV N V + WD GQE
Sbjct: 8 KCVTVGDGAVGKTCMLIS-YTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA------NK 127
YRG ++ +A + + L H +VL+ +K
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDK 126
Query: 128 QDLKDAMTPAEITDA 142
Q LKD A IT A
Sbjct: 127 QFLKDHPGAASITTA 141
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE 72
+YK+++VG D GK+ +L V + PT+ + + V + + D GQE
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 73 RLRTSWATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
Y R G V + ++ I ++++ R+ ED+ +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP---MVLVGNKCD 120
Query: 130 L 130
L
Sbjct: 121 L 121
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKLHLGE-------------VVTTH-PTVG--SNVEELVYK 59
++ K+ ++G AGKT+ L +L +GE VVT P + N +EL K
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQL-IGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL--K 96
Query: 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94
F WD GGQE + S + + ++++DS
Sbjct: 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 83 RGTHAVIVVIDSTDRARIS------IMKDELFRLLG--HEDLQHSVV--LIFANKQD 129
RG+H + VVI+ T R S ++KD + L G ++ +SV+ L+F + QD
Sbjct: 17 RGSHMIPVVIEQTSRGERSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQD 73
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY--KNIRFEAWD 67
+ F G + K+ IVG ++GK+ +++ G V P G +E+V ++ D
Sbjct: 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRD 73
Query: 68 VGGQERLR-TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126
GG L+ +W AV+ V D + + RL + V ++
Sbjct: 74 EGGPPELQFAAW------VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-VPMVLVG 126
Query: 127 KQDLKDAMTPAEITDA 142
QD A P I D+
Sbjct: 127 TQDAISAANPRVIDDS 142
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQER 73
Y+++++G GKT+ + H +G +V E ++ D E+
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 74 LRTSWA--TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130
L SW+ + +G A ++V DR + +L H +++ NK DL
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
>pdb|2ATQ|B Chain B, Rb69 Single-Stranded Dna Binding Protein-Dna Polymerase
Fusion
Length = 234
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 136 PAEITDALSLHSIKNH------DWHIQACSALTGD 164
PA+ DAL + NH W+I+ CS+ GD
Sbjct: 30 PAKTDDALPFAILVNHGFKKNGKWYIETCSSTHGD 64
>pdb|2A1K|A Chain A, Rb69 Single-Stranded Dna Binding Protein Core Domain
pdb|2A1K|B Chain B, Rb69 Single-Stranded Dna Binding Protein Core Domain
Length = 233
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 136 PAEITDALSLHSIKNH------DWHIQACSALTGD 164
PA+ DAL + NH W+I+ CS+ GD
Sbjct: 29 PAKTDDALPFAILVNHGFKKNGKWYIETCSSTHGD 63
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKL 37
K Y I+ VG + +GKTTT+ KL
Sbjct: 128 KPYVIMFVGFNGSGKTTTIAKL 149
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVY---KNIRFEAWDVGGQE 72
+YK+++VG D GK+ +L V + PT+ + + V + + D GQE
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 73 RLRTSWATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129
Y R G V + ++ I ++++ R+ +D+ +++ NK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP---MVLVGNKCD 119
Query: 130 L 130
L
Sbjct: 120 L 120
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72
P K+++I++ +NAGK T KL E P V V + V K IR D +
Sbjct: 146 LPKKEFEILLFLAENAGKVVTREKLL--ETFWEDP-VSPRVVDTVIKRIRKAIEDDPNRP 202
Query: 73 R-LRTSWATYYRGT 85
R ++T W Y T
Sbjct: 203 RYIKTIWGVGYXFT 216
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 15 GKDYKIIIVGLDNAGKTTTLYKL 37
GK I+ VGL +GKTTT KL
Sbjct: 99 GKQNVIMFVGLQGSGKTTTCSKL 121
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKL 37
L P K I++VG+ +GKTTT KL
Sbjct: 94 LNPKKQNVILLVGIQGSGKTTTAAKL 119
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 12 LFPGKDYKIIIVGLDNAGKTTTLYKL 37
L P K I++VG+ +GKTTT KL
Sbjct: 94 LNPKKQNVILLVGIQGSGKTTTAAKL 119
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-----DAMTPAE 138
G HAV V +D +DR ++ ++ + LG D + N + +++TP E
Sbjct: 50 GGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD-------VIVNNAGVAPSTPIESITP-E 101
Query: 139 ITDALSLHSIKNHDWHIQA 157
I D + ++K W IQA
Sbjct: 102 IVDKVYNINVKGVIWGIQA 120
>pdb|2QX2|A Chain A, Structure Of The C-Terminal Domain Of Sex Pheromone
Staph-Cam373 Precursor From Staphylococcus Aureus
Length = 344
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 107 LFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHS-IKNHDWH-IQACSAL 161
L RL ++DL+ + KQ +D++TP E IT A + S K ++WH I SAL
Sbjct: 174 LSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSAL 231
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 16 KDYKIIIVGLDNAGKTTTLYKL 37
K Y I VG + +GKTTT+ KL
Sbjct: 128 KPYVIXFVGFNGSGKTTTIAKL 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,735,356
Number of Sequences: 62578
Number of extensions: 231245
Number of successful extensions: 1078
Number of sequences better than 100.0: 310
Number of HSP's better than 100.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 315
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)