Query 030113
Match_columns 183
No_of_seqs 154 out of 1823
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 6.4E-39 1.4E-43 214.0 21.6 180 1-180 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 2.9E-38 6.2E-43 211.1 21.2 180 1-180 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 3.9E-37 8.4E-42 204.6 20.6 174 1-178 1-174 (175)
4 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.5E-38 5.4E-43 203.6 13.0 164 15-182 7-176 (205)
5 cd04149 Arf6 Arf6 subfamily. 100.0 7E-37 1.5E-41 202.1 19.7 162 14-175 6-167 (168)
6 KOG0070 GTP-binding ADP-ribosy 100.0 8.2E-37 1.8E-41 195.3 16.1 180 1-180 1-180 (181)
7 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 9.6E-36 2.1E-40 197.9 20.3 171 5-175 3-173 (174)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.4E-36 1.4E-40 195.9 19.1 158 18-175 1-158 (159)
9 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1E-36 2.2E-41 195.6 14.7 164 14-180 19-187 (221)
10 PF00025 Arf: ADP-ribosylation 100.0 2.2E-35 4.8E-40 195.8 21.5 172 6-177 2-175 (175)
11 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-36 2.4E-41 195.3 12.7 162 15-182 3-171 (200)
12 KOG0073 GTP-binding ADP-ribosy 100.0 2.1E-35 4.6E-40 184.3 17.3 179 1-180 1-180 (185)
13 cd04154 Arl2 Arl2 subfamily. 100.0 4.4E-35 9.6E-40 194.6 19.9 166 10-175 7-172 (173)
14 cd04158 ARD1 ARD1 subfamily. 100.0 5.2E-35 1.1E-39 193.5 19.5 164 19-182 1-165 (169)
15 smart00178 SAR Sar1p-like memb 100.0 8.9E-34 1.9E-38 189.9 20.8 173 5-177 4-184 (184)
16 KOG0078 GTP-binding protein SE 100.0 3.4E-35 7.3E-40 191.7 13.3 164 14-181 9-177 (207)
17 cd04151 Arl1 Arl1 subfamily. 100.0 1E-33 2.2E-38 185.5 19.1 157 19-175 1-157 (158)
18 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-34 3.1E-39 193.6 15.1 160 15-181 4-170 (189)
19 cd04120 Rab12 Rab12 subfamily. 100.0 2E-34 4.3E-39 194.6 15.2 159 18-180 1-165 (202)
20 KOG0080 GTPase Rab18, small G 100.0 6E-35 1.3E-39 181.8 11.2 164 15-181 9-177 (209)
21 KOG0098 GTPase Rab2, small G p 100.0 1.3E-34 2.7E-39 184.6 12.3 162 15-180 4-170 (216)
22 cd04157 Arl6 Arl6 subfamily. 100.0 2.5E-33 5.3E-38 184.4 18.9 158 19-176 1-162 (162)
23 cd04126 Rab20 Rab20 subfamily. 100.0 3.2E-34 6.9E-39 195.6 14.8 161 18-179 1-191 (220)
24 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.9E-33 6.3E-38 187.3 19.2 166 16-181 2-173 (183)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.7E-34 5.9E-39 190.4 13.3 160 17-180 2-166 (172)
26 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.2E-33 1.1E-37 183.6 19.2 157 19-175 1-166 (167)
27 cd00879 Sar1 Sar1 subfamily. 100.0 6.7E-33 1.4E-37 186.8 20.1 164 14-177 16-190 (190)
28 cd00878 Arf_Arl Arf (ADP-ribos 100.0 6.9E-33 1.5E-37 181.6 19.0 157 19-175 1-157 (158)
29 KOG0071 GTP-binding ADP-ribosy 100.0 4.3E-33 9.4E-38 169.7 16.5 179 1-179 1-179 (180)
30 cd01875 RhoG RhoG subfamily. 100.0 4.2E-34 9E-39 192.5 13.4 163 16-180 2-179 (191)
31 KOG0394 Ras-related GTPase [Ge 100.0 1.9E-34 4.2E-39 183.4 10.8 164 14-181 6-181 (210)
32 cd04155 Arl3 Arl3 subfamily. 100.0 1.9E-32 4.1E-37 182.0 20.3 165 12-176 9-173 (173)
33 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.6E-34 1.4E-38 189.5 13.0 164 14-179 2-181 (182)
34 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.3E-32 2.7E-37 180.7 18.3 157 19-175 1-159 (160)
35 cd04133 Rop_like Rop subfamily 100.0 1.2E-33 2.6E-38 187.3 13.2 160 18-179 2-174 (176)
36 PTZ00369 Ras-like protein; Pro 100.0 1.7E-33 3.8E-38 189.3 14.0 162 15-181 3-170 (189)
37 cd04127 Rab27A Rab27a subfamil 100.0 3E-33 6.4E-38 187.0 15.0 160 16-180 3-179 (180)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.4E-33 2E-37 184.4 16.8 162 18-182 1-170 (182)
39 cd00877 Ran Ran (Ras-related n 100.0 9.8E-33 2.1E-37 182.1 16.7 157 18-181 1-162 (166)
40 cd04122 Rab14 Rab14 subfamily. 100.0 5.9E-33 1.3E-37 183.3 15.4 157 17-179 2-165 (166)
41 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-32 4.7E-37 180.0 17.5 155 19-175 1-163 (164)
42 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3E-32 6.5E-37 185.0 18.2 160 18-181 1-171 (201)
43 KOG0093 GTPase Rab3, small G p 100.0 1.6E-33 3.5E-38 172.9 10.2 156 16-180 20-185 (193)
44 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.9E-32 1.5E-36 178.4 18.2 157 19-175 1-166 (167)
45 cd04175 Rap1 Rap1 subgroup. T 100.0 8.5E-33 1.8E-37 182.2 13.8 157 17-178 1-163 (164)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.3E-32 5.1E-37 180.8 15.8 161 19-180 2-167 (170)
47 cd04136 Rap_like Rap-like subf 100.0 8E-33 1.7E-37 182.1 13.4 156 18-177 2-162 (163)
48 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.4E-33 1.8E-37 183.7 13.6 158 18-177 2-174 (175)
49 PLN03071 GTP-binding nuclear p 100.0 4E-32 8.7E-37 186.2 17.1 158 15-180 11-174 (219)
50 cd04131 Rnd Rnd subfamily. Th 100.0 5.7E-33 1.2E-37 184.7 12.4 160 17-178 1-176 (178)
51 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.6E-33 1.9E-37 189.5 13.6 164 15-180 11-190 (232)
52 cd04111 Rab39 Rab39 subfamily. 100.0 2.4E-32 5.3E-37 186.3 15.1 159 17-180 2-168 (211)
53 cd01867 Rab8_Rab10_Rab13_like 100.0 3.6E-32 7.9E-37 179.7 15.3 158 16-179 2-166 (167)
54 cd01865 Rab3 Rab3 subfamily. 100.0 4.1E-32 8.9E-37 179.1 15.3 156 18-179 2-164 (165)
55 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.5E-32 1.9E-36 176.9 16.7 156 17-177 1-161 (162)
56 cd04117 Rab15 Rab15 subfamily. 100.0 3.6E-32 7.8E-37 178.6 14.7 154 18-176 1-160 (161)
57 cd04119 RJL RJL (RabJ-Like) su 100.0 1.8E-31 4E-36 176.3 18.0 156 18-178 1-167 (168)
58 KOG0095 GTPase Rab30, small G 100.0 7.7E-33 1.7E-37 170.6 10.2 160 16-179 6-170 (213)
59 KOG0086 GTPase Rab4, small G p 100.0 3.1E-32 6.7E-37 168.5 12.9 161 16-180 8-173 (214)
60 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.4E-32 7.4E-37 185.7 14.4 163 17-180 1-178 (222)
61 cd04144 Ras2 Ras2 subfamily. 100.0 2.2E-32 4.8E-37 184.1 13.1 158 19-181 1-166 (190)
62 smart00173 RAS Ras subfamily o 100.0 3.7E-32 8E-37 179.2 13.7 157 18-179 1-163 (164)
63 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.8E-32 3.9E-37 178.3 11.9 162 15-180 12-178 (222)
64 cd04110 Rab35 Rab35 subfamily. 100.0 7.8E-32 1.7E-36 182.6 15.4 160 15-181 4-170 (199)
65 cd04176 Rap2 Rap2 subgroup. T 100.0 3.3E-32 7.1E-37 179.2 13.2 157 17-177 1-162 (163)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.6E-32 7.9E-37 179.1 13.3 156 17-177 2-163 (164)
67 cd04159 Arl10_like Arl10-like 100.0 8.1E-31 1.8E-35 171.6 19.5 156 20-175 2-158 (159)
68 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 9E-32 2E-36 177.6 15.0 157 17-179 2-165 (166)
69 cd01871 Rac1_like Rac1-like su 100.0 1.6E-31 3.5E-36 177.4 16.1 157 18-176 2-173 (174)
70 cd04109 Rab28 Rab28 subfamily. 100.0 9.4E-32 2E-36 184.2 15.4 158 18-180 1-168 (215)
71 cd04103 Centaurin_gamma Centau 100.0 8.2E-32 1.8E-36 176.0 14.0 154 18-177 1-158 (158)
72 cd04134 Rho3 Rho3 subfamily. 100.0 3.6E-32 7.7E-37 182.9 12.3 162 18-181 1-177 (189)
73 KOG0091 GTPase Rab39, small G 100.0 2.9E-32 6.3E-37 170.3 10.9 162 15-179 6-174 (213)
74 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-31 3E-36 180.4 14.9 158 18-181 1-166 (191)
75 cd04116 Rab9 Rab9 subfamily. 100.0 8.8E-31 1.9E-35 173.6 18.3 159 15-177 3-170 (170)
76 PLN03118 Rab family protein; P 100.0 1.9E-31 4E-36 182.4 15.3 164 13-181 10-180 (211)
77 cd04124 RabL2 RabL2 subfamily. 100.0 6.1E-31 1.3E-35 172.8 17.1 156 18-181 1-161 (161)
78 cd04125 RabA_like RabA-like su 100.0 1.9E-31 4.2E-36 179.3 15.1 158 18-180 1-164 (188)
79 KOG0079 GTP-binding protein H- 100.0 1.7E-32 3.7E-37 168.7 8.9 157 18-179 9-170 (198)
80 cd04140 ARHI_like ARHI subfami 100.0 1.5E-31 3.3E-36 176.4 13.6 155 18-176 2-163 (165)
81 cd01868 Rab11_like Rab11-like. 100.0 3.6E-31 7.8E-36 174.6 15.2 156 16-177 2-164 (165)
82 cd04115 Rab33B_Rab33A Rab33B/R 100.0 2.3E-31 5E-36 176.3 14.1 158 17-178 2-169 (170)
83 cd01866 Rab2 Rab2 subfamily. 100.0 4.1E-31 9E-36 174.8 15.2 158 16-179 3-167 (168)
84 cd01864 Rab19 Rab19 subfamily. 100.0 1.4E-30 3.1E-35 171.7 17.7 157 16-177 2-165 (165)
85 KOG0075 GTP-binding ADP-ribosy 100.0 4E-31 8.6E-36 162.4 13.7 165 15-179 18-183 (186)
86 cd04118 Rab24 Rab24 subfamily. 100.0 3.6E-31 7.9E-36 178.8 14.9 161 18-180 1-168 (193)
87 cd04113 Rab4 Rab4 subfamily. 100.0 3.3E-31 7.2E-36 174.1 14.3 154 18-177 1-161 (161)
88 PLN03110 Rab GTPase; Provision 100.0 4.3E-31 9.2E-36 180.9 15.3 160 15-179 10-175 (216)
89 cd04106 Rab23_lke Rab23-like s 100.0 2.6E-31 5.6E-36 174.8 13.6 152 18-176 1-161 (162)
90 smart00176 RAN Ran (Ras-relate 100.0 8E-31 1.7E-35 176.8 16.0 151 23-180 1-156 (200)
91 cd01863 Rab18 Rab18 subfamily. 100.0 2.1E-30 4.5E-35 170.3 17.1 155 18-177 1-161 (161)
92 cd01860 Rab5_related Rab5-rela 100.0 3E-30 6.5E-35 169.9 17.5 155 17-177 1-162 (163)
93 smart00175 RAB Rab subfamily o 100.0 8.5E-31 1.8E-35 172.6 14.8 157 18-180 1-164 (164)
94 cd04132 Rho4_like Rho4-like su 100.0 6.4E-31 1.4E-35 176.7 13.9 156 18-180 1-169 (187)
95 cd04142 RRP22 RRP22 subfamily. 100.0 1.2E-30 2.5E-35 176.2 15.0 161 18-182 1-178 (198)
96 cd04143 Rhes_like Rhes_like su 100.0 7.5E-30 1.6E-34 177.2 19.0 156 18-177 1-170 (247)
97 cd01861 Rab6 Rab6 subfamily. 100.0 4.8E-30 1E-34 168.6 17.1 154 18-177 1-161 (161)
98 PF00071 Ras: Ras family; Int 100.0 4.5E-31 9.8E-36 173.6 12.0 154 19-178 1-161 (162)
99 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.7E-30 3.6E-35 171.2 14.7 154 18-177 1-163 (164)
100 cd01862 Rab7 Rab7 subfamily. 100.0 1.2E-29 2.6E-34 168.3 18.7 160 18-181 1-170 (172)
101 cd01892 Miro2 Miro2 subfamily. 100.0 9.8E-30 2.1E-34 168.2 18.0 155 15-179 2-167 (169)
102 KOG0072 GTP-binding ADP-ribosy 100.0 4.2E-31 9E-36 161.8 10.3 180 1-180 1-181 (182)
103 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-30 2.5E-35 172.6 13.1 158 17-178 1-164 (168)
104 PLN03108 Rab family protein; P 100.0 2.6E-30 5.6E-35 176.4 15.1 160 15-180 4-170 (210)
105 cd01893 Miro1 Miro1 subfamily. 100.0 5E-30 1.1E-34 169.3 15.2 161 18-179 1-165 (166)
106 smart00174 RHO Rho (Ras homolo 100.0 1.7E-30 3.8E-35 172.7 13.1 158 20-179 1-173 (174)
107 KOG0076 GTP-binding ADP-ribosy 100.0 5.5E-31 1.2E-35 166.2 9.6 180 1-180 1-189 (197)
108 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-30 2.9E-35 175.4 11.8 156 17-176 2-194 (195)
109 cd04135 Tc10 TC10 subfamily. 100.0 2.5E-30 5.5E-35 172.0 12.6 159 18-177 1-173 (174)
110 cd04139 RalA_RalB RalA/RalB su 100.0 2.2E-29 4.8E-34 165.8 16.6 157 18-179 1-163 (164)
111 cd04147 Ras_dva Ras-dva subfam 100.0 2.2E-29 4.9E-34 170.5 16.4 160 19-179 1-164 (198)
112 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.2E-30 7E-35 171.3 12.0 155 18-174 1-170 (173)
113 cd04148 RGK RGK subfamily. Th 100.0 9.8E-30 2.1E-34 174.6 14.3 154 18-178 1-163 (221)
114 cd04123 Rab21 Rab21 subfamily. 100.0 2.4E-29 5.3E-34 165.3 14.6 154 18-177 1-161 (162)
115 cd04146 RERG_RasL11_like RERG/ 100.0 6.7E-30 1.5E-34 168.5 11.3 155 19-178 1-164 (165)
116 cd00154 Rab Rab family. Rab G 100.0 1.5E-28 3.2E-33 160.8 17.0 152 18-175 1-159 (159)
117 cd01870 RhoA_like RhoA-like su 100.0 1.3E-28 2.8E-33 163.9 16.2 158 18-177 2-174 (175)
118 cd04114 Rab30 Rab30 subfamily. 100.0 1.7E-28 3.7E-33 162.4 15.9 158 15-177 5-168 (169)
119 cd04137 RheB Rheb (Ras Homolog 100.0 2.8E-28 6.2E-33 162.9 16.5 159 18-181 2-166 (180)
120 KOG0081 GTPase Rab27, small G 100.0 7.8E-31 1.7E-35 163.3 3.6 160 17-179 9-182 (219)
121 cd00157 Rho Rho (Ras homology) 100.0 5.9E-29 1.3E-33 164.9 12.3 157 18-175 1-170 (171)
122 PTZ00132 GTP-binding nuclear p 100.0 7.9E-28 1.7E-32 165.0 17.9 163 12-181 4-171 (215)
123 cd00876 Ras Ras family. The R 100.0 1.2E-28 2.6E-33 161.6 13.3 154 19-177 1-160 (160)
124 KOG0088 GTPase Rab21, small G 100.0 4.2E-29 9.1E-34 155.5 6.8 163 15-181 11-178 (218)
125 cd04129 Rho2 Rho2 subfamily. 100.0 4.9E-27 1.1E-31 157.8 16.5 163 18-182 2-177 (187)
126 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.7E-30 7.9E-35 155.9 1.2 155 22-180 2-162 (192)
127 cd01897 NOG NOG1 is a nucleola 100.0 3.9E-27 8.5E-32 155.8 15.2 153 18-177 1-167 (168)
128 cd01898 Obg Obg subfamily. Th 100.0 1.1E-26 2.4E-31 153.9 15.6 156 19-177 2-170 (170)
129 KOG0074 GTP-binding ADP-ribosy 99.9 4.7E-27 1E-31 143.7 11.5 165 14-178 14-179 (185)
130 KOG0097 GTPase Rab14, small G 99.9 3.7E-27 7.9E-32 144.5 11.0 162 15-180 9-175 (215)
131 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.4E-26 3.1E-31 156.1 14.9 116 18-133 1-144 (202)
132 cd04171 SelB SelB subfamily. 99.9 2.3E-26 4.9E-31 151.4 14.8 151 19-175 2-163 (164)
133 KOG0395 Ras-related GTPase [Ge 99.9 8.1E-27 1.8E-31 156.2 12.5 161 16-179 2-166 (196)
134 cd01890 LepA LepA subfamily. 99.9 2.3E-26 4.9E-31 153.6 14.2 153 19-178 2-177 (179)
135 PRK15494 era GTPase Era; Provi 99.9 7.9E-26 1.7E-30 163.8 17.7 160 14-182 49-220 (339)
136 cd01878 HflX HflX subfamily. 99.9 6.6E-26 1.4E-30 154.3 15.6 153 15-177 39-204 (204)
137 TIGR00436 era GTP-binding prot 99.9 1.2E-25 2.6E-30 158.8 15.7 155 19-182 2-168 (270)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.4E-25 5.2E-30 147.1 16.1 154 19-178 2-166 (168)
139 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-25 2.9E-30 161.6 15.9 161 18-182 159-332 (335)
140 cd00881 GTP_translation_factor 99.9 4.4E-25 9.5E-30 148.5 16.4 155 19-178 1-187 (189)
141 PRK04213 GTP-binding protein; 99.9 6.1E-26 1.3E-30 154.2 10.6 163 15-182 7-196 (201)
142 KOG0393 Ras-related small GTPa 99.9 5.4E-26 1.2E-30 149.3 9.6 165 15-180 2-181 (198)
143 TIGR02528 EutP ethanolamine ut 99.9 2.1E-25 4.6E-30 143.6 12.1 134 19-174 2-141 (142)
144 PRK03003 GTP-binding protein D 99.9 1.3E-24 2.7E-29 164.2 17.7 159 16-179 210-383 (472)
145 TIGR00231 small_GTP small GTP- 99.9 9.9E-25 2.1E-29 142.5 15.0 153 17-174 1-160 (161)
146 cd01889 SelB_euk SelB subfamil 99.9 6E-25 1.3E-29 148.2 14.0 157 18-179 1-187 (192)
147 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2E-24 4.4E-29 141.1 15.9 143 18-177 2-156 (157)
148 TIGR03156 GTP_HflX GTP-binding 99.9 2E-24 4.4E-29 156.7 16.8 151 16-177 188-351 (351)
149 cd01881 Obg_like The Obg-like 99.9 4.6E-25 1E-29 146.8 12.2 152 22-176 1-175 (176)
150 cd04105 SR_beta Signal recogni 99.9 1.6E-24 3.4E-29 147.0 14.7 157 19-175 2-202 (203)
151 cd00882 Ras_like_GTPase Ras-li 99.9 9.3E-25 2E-29 141.6 13.2 151 22-175 1-157 (157)
152 PRK03003 GTP-binding protein D 99.9 3.2E-24 6.9E-29 162.0 17.6 152 16-179 37-200 (472)
153 cd01891 TypA_BipA TypA (tyrosi 99.9 2.5E-24 5.5E-29 145.4 15.4 147 18-169 3-173 (194)
154 TIGR02729 Obg_CgtA Obg family 99.9 2.7E-24 5.8E-29 154.8 16.0 156 18-177 158-328 (329)
155 PLN00023 GTP-binding protein; 99.9 1.7E-24 3.7E-29 152.8 14.6 122 12-133 16-166 (334)
156 PRK05291 trmE tRNA modificatio 99.9 2.8E-24 6.2E-29 160.8 15.8 147 15-179 213-371 (449)
157 PF02421 FeoB_N: Ferrous iron 99.9 3.6E-25 7.9E-30 141.9 9.4 141 18-173 1-156 (156)
158 cd01879 FeoB Ferrous iron tran 99.9 2.8E-24 6.1E-29 140.6 13.8 145 22-177 1-156 (158)
159 COG1100 GTPase SAR1 and relate 99.9 5.5E-24 1.2E-28 146.4 15.7 164 16-179 4-186 (219)
160 TIGR03594 GTPase_EngA ribosome 99.9 7.9E-24 1.7E-28 158.9 16.9 158 16-178 171-344 (429)
161 cd01888 eIF2_gamma eIF2-gamma 99.9 4E-24 8.7E-29 145.2 13.8 159 18-179 1-200 (203)
162 PF00009 GTP_EFTU: Elongation 99.9 3.3E-24 7.1E-29 144.1 13.1 158 15-178 1-187 (188)
163 COG1159 Era GTPase [General fu 99.9 6.1E-24 1.3E-28 146.4 14.5 161 14-182 3-176 (298)
164 cd01895 EngA2 EngA2 subfamily. 99.9 2.6E-23 5.7E-28 137.9 17.2 155 17-176 2-173 (174)
165 PRK15467 ethanolamine utilizat 99.9 6.8E-24 1.5E-28 138.5 13.6 143 19-180 3-149 (158)
166 PRK00089 era GTPase Era; Revie 99.9 1.3E-23 2.7E-28 150.4 16.0 160 15-182 3-175 (292)
167 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.3E-23 5.1E-28 155.2 17.5 149 15-179 201-361 (442)
168 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-23 2.4E-28 137.6 13.9 145 21-177 1-157 (157)
169 PTZ00099 rab6; Provisional 99.9 5.4E-24 1.2E-28 141.1 12.1 131 45-181 9-145 (176)
170 KOG4252 GTP-binding protein [S 99.9 4E-26 8.6E-31 145.2 1.2 159 16-180 19-183 (246)
171 PRK00454 engB GTP-binding prot 99.9 1.6E-23 3.5E-28 141.8 14.0 162 12-179 19-195 (196)
172 PRK11058 GTPase HflX; Provisio 99.9 5.9E-23 1.3E-27 152.3 17.5 153 18-179 198-363 (426)
173 PRK12297 obgE GTPase CgtA; Rev 99.9 7.5E-23 1.6E-27 150.9 17.9 157 18-181 159-330 (424)
174 TIGR00487 IF-2 translation ini 99.9 2.6E-23 5.6E-28 159.2 14.6 155 15-175 85-247 (587)
175 PRK12296 obgE GTPase CgtA; Rev 99.9 5.8E-23 1.2E-27 153.4 15.7 159 17-180 159-342 (500)
176 PRK00093 GTP-binding protein D 99.9 1.7E-22 3.7E-27 151.9 17.2 159 15-178 171-344 (435)
177 cd04163 Era Era subfamily. Er 99.9 1.3E-22 2.8E-27 133.7 14.6 154 16-177 2-168 (168)
178 TIGR03598 GTPase_YsxC ribosome 99.9 3.5E-23 7.6E-28 138.1 11.5 148 11-167 12-179 (179)
179 TIGR01393 lepA GTP-binding pro 99.9 2.2E-22 4.8E-27 154.8 17.0 156 17-179 3-181 (595)
180 PRK05306 infB translation init 99.9 8.6E-23 1.9E-27 159.9 14.9 157 14-176 287-450 (787)
181 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-22 4.9E-27 151.1 16.6 147 19-179 1-161 (429)
182 cd00880 Era_like Era (E. coli 99.9 1E-22 2.2E-27 133.2 12.8 151 22-177 1-163 (163)
183 PRK09518 bifunctional cytidyla 99.9 2.6E-22 5.7E-27 158.0 17.1 154 14-179 272-437 (712)
184 PF08477 Miro: Miro-like prote 99.9 1.4E-23 3.1E-28 131.1 8.0 109 19-129 1-119 (119)
185 PRK12298 obgE GTPase CgtA; Rev 99.9 3.4E-22 7.4E-27 146.7 16.3 163 18-182 160-337 (390)
186 TIGR00475 selB selenocysteine- 99.9 3.9E-23 8.5E-28 158.8 11.8 158 18-180 1-168 (581)
187 PRK09518 bifunctional cytidyla 99.9 5E-22 1.1E-26 156.4 17.9 159 16-179 449-622 (712)
188 PRK00093 GTP-binding protein D 99.9 3.8E-22 8.2E-27 150.0 16.0 146 18-177 2-161 (435)
189 CHL00189 infB translation init 99.9 2.8E-22 6E-27 155.9 15.3 157 15-177 242-409 (742)
190 KOG1673 Ras GTPases [General f 99.9 8.2E-23 1.8E-27 127.1 9.1 168 13-182 16-190 (205)
191 COG1160 Predicted GTPases [Gen 99.9 4.7E-22 1E-26 144.2 14.1 149 18-178 4-165 (444)
192 COG1160 Predicted GTPases [Gen 99.9 4E-22 8.7E-27 144.6 13.7 157 16-177 177-350 (444)
193 PRK12317 elongation factor 1-a 99.9 3E-22 6.5E-27 149.8 13.4 154 14-169 3-196 (425)
194 PRK05433 GTP-binding protein L 99.9 2.5E-21 5.4E-26 149.2 17.7 158 15-179 5-185 (600)
195 cd01884 EF_Tu EF-Tu subfamily. 99.9 8.9E-22 1.9E-26 132.3 12.2 145 17-166 2-171 (195)
196 TIGR00483 EF-1_alpha translati 99.9 6.3E-22 1.4E-26 148.1 12.4 153 14-168 4-197 (426)
197 PF10662 PduV-EutP: Ethanolami 99.9 1.4E-21 3E-26 122.7 11.7 135 19-174 3-142 (143)
198 COG2229 Predicted GTPase [Gene 99.9 8.8E-21 1.9E-25 121.7 15.3 156 14-176 7-176 (187)
199 TIGR03680 eif2g_arch translati 99.9 2.3E-21 5.1E-26 143.9 14.7 161 15-178 2-196 (406)
200 cd01896 DRG The developmentall 99.9 8.2E-21 1.8E-25 131.2 16.0 149 19-177 2-225 (233)
201 PRK04000 translation initiatio 99.9 4.8E-21 1E-25 142.2 15.2 162 13-179 5-202 (411)
202 cd04168 TetM_like Tet(M)-like 99.9 2.5E-21 5.5E-26 133.9 12.6 155 19-178 1-235 (237)
203 TIGR01394 TypA_BipA GTP-bindin 99.9 5.7E-21 1.2E-25 146.8 15.8 157 18-179 2-192 (594)
204 KOG0077 Vesicle coat complex C 99.9 1.2E-21 2.6E-26 123.2 9.6 163 15-177 18-192 (193)
205 PRK10218 GTP-binding protein; 99.9 3.8E-21 8.3E-26 147.6 14.0 160 15-179 3-196 (607)
206 TIGR00491 aIF-2 translation in 99.9 7.4E-21 1.6E-25 145.7 15.2 153 16-176 3-214 (590)
207 PRK09554 feoB ferrous iron tra 99.9 9.7E-21 2.1E-25 149.0 15.8 151 16-178 2-168 (772)
208 COG0486 ThdF Predicted GTPase 99.9 1.3E-20 2.8E-25 137.2 15.1 152 15-180 215-378 (454)
209 cd01883 EF1_alpha Eukaryotic e 99.9 4.8E-21 1E-25 131.5 11.2 146 19-167 1-194 (219)
210 cd04166 CysN_ATPS CysN_ATPS su 99.9 9.5E-21 2.1E-25 129.1 12.3 147 19-169 1-185 (208)
211 TIGR00437 feoB ferrous iron tr 99.9 7.7E-21 1.7E-25 146.4 13.0 143 24-177 1-154 (591)
212 PRK10512 selenocysteinyl-tRNA- 99.9 6.1E-21 1.3E-25 147.3 12.4 156 19-179 2-167 (614)
213 cd04165 GTPBP1_like GTPBP1-lik 99.9 9.1E-21 2E-25 130.0 12.0 151 19-174 1-219 (224)
214 COG0218 Predicted GTPase [Gene 99.9 6E-20 1.3E-24 120.4 14.5 163 11-180 18-199 (200)
215 PRK04004 translation initiatio 99.9 5.6E-20 1.2E-24 141.3 16.5 154 14-175 3-215 (586)
216 cd01876 YihA_EngB The YihA (En 99.9 4.7E-20 1E-24 121.7 13.9 151 19-177 1-170 (170)
217 PRK12736 elongation factor Tu; 99.9 1.6E-20 3.4E-25 139.0 12.6 160 14-178 9-201 (394)
218 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.4E-21 9.6E-26 123.2 8.2 159 16-181 9-172 (216)
219 cd04169 RF3 RF3 subfamily. Pe 99.8 1E-19 2.2E-24 127.9 15.4 110 18-132 3-137 (267)
220 PRK12735 elongation factor Tu; 99.8 2.8E-20 6.1E-25 137.8 12.8 160 14-178 9-203 (396)
221 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-19 2.4E-24 125.4 13.9 163 15-183 70-276 (379)
222 cd01886 EF-G Elongation factor 99.8 9.5E-20 2E-24 128.2 13.1 109 19-132 1-130 (270)
223 cd04170 EF-G_bact Elongation f 99.8 2E-19 4.3E-24 127.2 13.6 109 19-132 1-130 (268)
224 KOG3883 Ras family small GTPas 99.8 3.8E-19 8.3E-24 110.6 12.9 163 15-180 7-177 (198)
225 CHL00071 tufA elongation facto 99.8 1.2E-19 2.5E-24 135.0 12.4 147 14-165 9-180 (409)
226 TIGR00485 EF-Tu translation el 99.8 1.6E-19 3.4E-24 133.9 12.3 158 14-176 9-199 (394)
227 PRK00049 elongation factor Tu; 99.8 3.6E-19 7.8E-24 131.8 12.8 160 14-178 9-203 (396)
228 PRK00741 prfC peptide chain re 99.8 8.8E-19 1.9E-23 133.2 14.6 113 15-132 8-145 (526)
229 PRK13351 elongation factor G; 99.8 2.1E-18 4.6E-23 136.0 16.9 115 14-133 5-140 (687)
230 COG0532 InfB Translation initi 99.8 8.7E-19 1.9E-23 129.4 13.7 156 15-176 3-168 (509)
231 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.4E-19 7.4E-24 121.7 10.6 161 19-182 1-180 (232)
232 COG1084 Predicted GTPase [Gene 99.8 1.9E-18 4.2E-23 120.6 14.3 155 16-177 167-335 (346)
233 PLN03126 Elongation factor Tu; 99.8 5.6E-19 1.2E-23 132.8 12.4 146 14-164 78-248 (478)
234 PRK05124 cysN sulfate adenylyl 99.8 7.9E-19 1.7E-23 132.4 13.2 153 13-169 23-216 (474)
235 KOG0090 Signal recognition par 99.8 1.2E-18 2.6E-23 114.4 12.3 167 10-177 31-238 (238)
236 PTZ00141 elongation factor 1- 99.8 1.2E-18 2.5E-23 130.6 13.9 151 14-168 4-203 (446)
237 cd04167 Snu114p Snu114p subfam 99.8 6.5E-19 1.4E-23 120.6 11.4 108 19-131 2-136 (213)
238 PLN00043 elongation factor 1-a 99.8 2.1E-18 4.5E-23 129.1 14.4 150 14-168 4-203 (447)
239 PTZ00327 eukaryotic translatio 99.8 1.4E-18 3.1E-23 129.7 13.2 164 13-179 30-234 (460)
240 PF09439 SRPRB: Signal recogni 99.8 1.4E-19 3.1E-24 118.6 6.6 126 16-142 2-136 (181)
241 PLN03127 Elongation factor Tu; 99.8 1.6E-18 3.4E-23 129.7 13.0 160 14-178 58-252 (447)
242 COG0370 FeoB Fe2+ transport sy 99.8 1.5E-18 3.2E-23 131.6 12.5 150 16-180 2-166 (653)
243 cd04104 p47_IIGP_like p47 (47- 99.8 1.4E-18 3.1E-23 117.5 10.2 158 17-181 1-187 (197)
244 TIGR02034 CysN sulfate adenyly 99.8 3.4E-18 7.4E-23 127.0 13.1 147 18-168 1-187 (406)
245 COG2262 HflX GTPases [General 99.8 1.7E-17 3.7E-22 119.2 15.9 156 15-180 190-358 (411)
246 PRK05506 bifunctional sulfate 99.8 3.8E-18 8.1E-23 133.3 13.6 159 6-168 13-211 (632)
247 KOG4423 GTP-binding protein-li 99.8 1E-20 2.2E-25 121.3 -1.1 162 18-180 26-196 (229)
248 KOG1489 Predicted GTP-binding 99.8 6.1E-18 1.3E-22 117.4 11.6 154 18-176 197-365 (366)
249 TIGR00503 prfC peptide chain r 99.8 1.2E-17 2.6E-22 127.1 13.8 112 15-131 9-145 (527)
250 COG1163 DRG Predicted GTPase [ 99.8 2.3E-17 4.9E-22 115.0 13.7 155 13-177 59-288 (365)
251 TIGR00484 EF-G translation elo 99.8 5.7E-17 1.2E-21 127.8 17.8 114 14-132 7-141 (689)
252 KOG1707 Predicted Ras related/ 99.8 2.4E-18 5.2E-23 127.7 9.0 162 14-178 6-175 (625)
253 KOG0462 Elongation factor-type 99.8 1.7E-17 3.7E-22 122.6 13.1 159 15-180 58-237 (650)
254 KOG1145 Mitochondrial translat 99.8 2.1E-17 4.6E-22 122.1 13.6 155 15-176 151-314 (683)
255 PRK12739 elongation factor G; 99.8 2.6E-17 5.5E-22 129.7 14.1 114 14-132 5-139 (691)
256 cd01885 EF2 EF2 (for archaea a 99.7 3.3E-17 7.1E-22 112.1 11.7 108 19-131 2-138 (222)
257 PF01926 MMR_HSR1: 50S ribosom 99.7 1.2E-16 2.5E-21 99.3 13.0 103 19-127 1-116 (116)
258 COG5256 TEF1 Translation elong 99.7 5.2E-17 1.1E-21 116.7 12.7 150 14-168 4-201 (428)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 9.9E-17 2.1E-21 108.5 13.3 156 18-180 1-186 (196)
260 PRK00007 elongation factor G; 99.7 7.9E-17 1.7E-21 126.9 14.2 114 14-132 7-141 (693)
261 cd01899 Ygr210 Ygr210 subfamil 99.7 9.1E-17 2E-21 115.2 12.6 156 20-181 1-272 (318)
262 COG0481 LepA Membrane GTPase L 99.7 1.6E-16 3.4E-21 115.9 12.5 159 15-181 7-189 (603)
263 KOG1191 Mitochondrial GTPase [ 99.7 1.2E-16 2.7E-21 116.8 11.9 164 15-179 266-451 (531)
264 PRK09866 hypothetical protein; 99.7 8.2E-16 1.8E-20 116.8 15.5 113 61-176 230-351 (741)
265 PRK12740 elongation factor G; 99.7 7.3E-16 1.6E-20 121.5 15.7 106 23-133 1-127 (668)
266 COG0536 Obg Predicted GTPase [ 99.7 3E-16 6.5E-21 110.3 11.5 155 18-180 160-335 (369)
267 smart00275 G_alpha G protein a 99.7 1.1E-15 2.3E-20 111.1 14.8 132 48-179 171-335 (342)
268 COG4917 EutP Ethanolamine util 99.7 1.6E-16 3.6E-21 95.7 8.4 137 19-175 3-143 (148)
269 cd00066 G-alpha G protein alph 99.7 5.8E-16 1.3E-20 111.6 12.6 133 48-180 148-313 (317)
270 PRK09602 translation-associate 99.7 2E-15 4.3E-20 111.4 15.2 78 18-95 2-113 (396)
271 COG3596 Predicted GTPase [Gene 99.7 8.3E-16 1.8E-20 105.2 10.7 162 14-180 36-224 (296)
272 PRK13768 GTPase; Provisional 99.7 5.9E-16 1.3E-20 108.3 8.7 117 61-178 97-247 (253)
273 cd01850 CDC_Septin CDC/Septin. 99.7 3.3E-15 7.2E-20 105.7 12.1 140 15-161 2-185 (276)
274 COG5257 GCD11 Translation init 99.7 6.4E-16 1.4E-20 107.7 8.1 164 15-181 8-205 (415)
275 KOG1490 GTP-binding protein CR 99.6 5.1E-16 1.1E-20 113.8 6.6 164 14-179 165-342 (620)
276 PF03029 ATP_bind_1: Conserved 99.6 2.4E-15 5.2E-20 104.0 8.9 116 62-177 92-236 (238)
277 PRK09435 membrane ATPase/prote 99.6 6.1E-15 1.3E-19 106.0 10.3 109 60-180 148-262 (332)
278 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.1E-14 2.4E-19 100.3 11.2 141 14-163 36-181 (225)
279 PRK14845 translation initiatio 99.6 2.3E-14 5E-19 115.6 12.7 141 28-176 472-671 (1049)
280 COG1217 TypA Predicted membran 99.6 2.3E-14 5.1E-19 104.5 11.4 159 16-180 4-197 (603)
281 KOG1532 GTPase XAB1, interacts 99.6 7.1E-15 1.5E-19 100.6 7.6 169 11-179 13-265 (366)
282 TIGR00490 aEF-2 translation el 99.6 5.2E-15 1.1E-19 117.1 7.5 113 15-132 17-152 (720)
283 KOG0082 G-protein alpha subuni 99.6 8.3E-14 1.8E-18 99.7 12.6 134 47-180 181-346 (354)
284 KOG0461 Selenocysteine-specifi 99.6 5.9E-14 1.3E-18 99.1 10.5 160 14-179 4-194 (522)
285 COG4108 PrfC Peptide chain rel 99.6 1.2E-13 2.5E-18 100.2 12.0 111 16-131 11-146 (528)
286 cd01853 Toc34_like Toc34-like 99.5 1.9E-13 4E-18 95.2 12.4 118 14-133 28-164 (249)
287 COG3276 SelB Selenocysteine-sp 99.5 1.2E-13 2.7E-18 100.2 11.7 154 19-177 2-161 (447)
288 COG2895 CysN GTPases - Sulfate 99.5 2.5E-13 5.4E-18 96.1 12.2 147 15-167 4-192 (431)
289 PF04548 AIG1: AIG1 family; I 99.5 6.7E-14 1.5E-18 95.7 9.2 160 18-180 1-188 (212)
290 TIGR00101 ureG urease accessor 99.5 4.1E-13 8.9E-18 90.7 12.7 103 61-178 92-196 (199)
291 PLN00116 translation elongatio 99.5 3.4E-14 7.3E-19 114.2 8.2 113 14-131 16-163 (843)
292 KOG0458 Elongation factor 1 al 99.5 2.1E-13 4.6E-18 101.9 11.4 153 12-167 172-371 (603)
293 KOG3887 Predicted small GTPase 99.5 1.7E-13 3.6E-18 92.4 9.7 162 18-182 28-206 (347)
294 PTZ00416 elongation factor 2; 99.5 8.3E-14 1.8E-18 111.8 9.2 113 14-131 16-157 (836)
295 KOG1144 Translation initiation 99.5 4.1E-14 8.9E-19 108.2 6.9 157 15-179 473-688 (1064)
296 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.1E-12 2.5E-17 92.8 13.6 116 15-132 36-167 (313)
297 PRK07560 elongation factor EF- 99.5 1.1E-13 2.3E-18 110.0 9.4 112 15-131 18-152 (731)
298 KOG3886 GTP-binding protein [S 99.5 1.3E-13 2.8E-18 92.1 7.3 162 17-181 4-181 (295)
299 PTZ00258 GTP-binding protein; 99.5 2E-12 4.3E-17 94.8 13.9 82 14-95 18-126 (390)
300 PF05049 IIGP: Interferon-indu 99.5 1.7E-13 3.7E-18 99.4 7.7 157 15-180 33-220 (376)
301 KOG3905 Dynein light intermedi 99.5 3.5E-12 7.5E-17 89.6 12.5 165 16-180 51-292 (473)
302 TIGR00750 lao LAO/AO transport 99.4 2.8E-12 6E-17 92.1 11.9 107 60-178 126-238 (300)
303 TIGR00073 hypB hydrogenase acc 99.4 1.1E-12 2.5E-17 89.4 9.5 152 11-177 16-206 (207)
304 PF03308 ArgK: ArgK protein; 99.4 1.1E-12 2.5E-17 89.8 8.9 151 15-177 27-229 (266)
305 COG0050 TufB GTPases - transla 99.4 3.8E-12 8.2E-17 88.2 11.3 161 14-179 9-202 (394)
306 PF05783 DLIC: Dynein light in 99.4 8.1E-12 1.8E-16 93.8 12.8 167 15-181 23-267 (472)
307 COG0378 HypB Ni2+-binding GTPa 99.4 3E-12 6.5E-17 83.9 8.9 80 86-177 119-200 (202)
308 COG1703 ArgK Putative periplas 99.4 2E-11 4.4E-16 85.0 13.4 154 14-179 48-255 (323)
309 PRK09601 GTP-binding protein Y 99.4 9E-12 1.9E-16 90.5 11.4 78 18-95 3-107 (364)
310 COG0480 FusA Translation elong 99.4 2.3E-12 5E-17 100.6 8.9 115 14-133 7-143 (697)
311 smart00010 small_GTPase Small 99.4 9.2E-13 2E-17 82.5 5.4 113 18-167 1-115 (124)
312 PF00350 Dynamin_N: Dynamin fa 99.4 7.6E-12 1.6E-16 82.6 9.9 64 61-128 101-168 (168)
313 PRK10463 hydrogenase nickel in 99.4 1.6E-11 3.4E-16 86.5 11.2 55 119-176 231-287 (290)
314 PF00503 G-alpha: G-protein al 99.4 9.3E-12 2E-16 92.6 10.6 130 48-177 222-389 (389)
315 TIGR00157 ribosome small subun 99.4 2.2E-12 4.8E-17 89.9 6.8 95 72-175 24-120 (245)
316 PF00735 Septin: Septin; Inte 99.3 2.7E-11 5.8E-16 85.9 11.1 120 17-141 4-165 (281)
317 KOG0466 Translation initiation 99.3 1.3E-12 2.9E-17 91.0 3.2 165 13-180 34-243 (466)
318 smart00053 DYNc Dynamin, GTPas 99.3 3.2E-10 6.9E-15 78.4 14.7 70 61-134 125-208 (240)
319 KOG1486 GTP-binding protein DR 99.3 9.2E-11 2E-15 79.8 10.7 82 16-97 61-152 (364)
320 TIGR00993 3a0901s04IAP86 chlor 99.3 1.6E-10 3.5E-15 88.9 12.2 115 16-132 117-250 (763)
321 KOG0468 U5 snRNP-specific prot 99.2 2.1E-11 4.5E-16 92.8 6.6 112 14-130 125-261 (971)
322 COG5258 GTPBP1 GTPase [General 99.2 1.5E-10 3.3E-15 83.2 10.4 160 14-179 114-339 (527)
323 COG0012 Predicted GTPase, prob 99.2 3.3E-10 7E-15 81.5 11.4 81 17-97 2-110 (372)
324 KOG1707 Predicted Ras related/ 99.2 7.4E-10 1.6E-14 83.4 13.7 152 14-178 422-583 (625)
325 TIGR02836 spore_IV_A stage IV 99.2 6.5E-10 1.4E-14 81.4 13.0 153 15-175 15-234 (492)
326 cd01900 YchF YchF subfamily. 99.2 9E-11 2E-15 82.6 8.1 76 20-95 1-103 (274)
327 KOG0410 Predicted GTP binding 99.2 1.2E-10 2.6E-15 81.9 7.8 150 14-178 175-341 (410)
328 KOG0460 Mitochondrial translat 99.1 3.5E-10 7.5E-15 80.1 8.5 160 14-177 51-244 (449)
329 cd01855 YqeH YqeH. YqeH is an 99.1 1.5E-10 3.2E-15 78.0 6.5 98 74-178 24-125 (190)
330 cd04178 Nucleostemin_like Nucl 99.1 3.2E-10 6.8E-15 74.9 7.2 56 15-70 115-171 (172)
331 cd01858 NGP_1 NGP-1. Autoanti 99.1 4.4E-10 9.5E-15 73.4 7.5 56 15-70 100-156 (157)
332 KOG0099 G protein subunit Galp 99.1 1E-09 2.2E-14 75.2 9.2 133 48-180 189-371 (379)
333 COG5019 CDC3 Septin family pro 99.1 2.4E-09 5.3E-14 76.7 11.2 140 12-157 18-200 (373)
334 KOG0705 GTPase-activating prot 99.1 1.9E-10 4.2E-15 85.9 5.9 160 14-178 27-189 (749)
335 cd01859 MJ1464 MJ1464. This f 99.1 3.8E-10 8.3E-15 73.6 5.4 95 75-179 3-97 (156)
336 KOG2655 Septin family protein 99.0 7.6E-09 1.7E-13 74.7 11.9 127 10-141 14-181 (366)
337 KOG1143 Predicted translation 99.0 7.3E-10 1.6E-14 79.6 6.2 151 17-172 167-382 (591)
338 KOG0085 G protein subunit Galp 99.0 7.5E-10 1.6E-14 74.6 5.2 132 48-179 186-350 (359)
339 KOG0447 Dynamin-like GTP bindi 99.0 3E-08 6.5E-13 74.8 13.9 96 61-159 412-522 (980)
340 KOG0465 Mitochondrial elongati 99.0 1E-09 2.3E-14 83.0 5.8 111 16-131 38-169 (721)
341 KOG1547 Septin CDC10 and relat 99.0 8.2E-09 1.8E-13 70.0 9.3 147 12-164 41-229 (336)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.8E-09 3.8E-14 69.3 5.8 53 18-71 84-138 (141)
343 PRK12289 GTPase RsgA; Reviewed 99.0 2.4E-09 5.1E-14 78.2 6.8 89 79-176 84-173 (352)
344 KOG1487 GTP-binding protein DR 99.0 2.7E-09 5.9E-14 73.1 6.6 149 18-177 60-280 (358)
345 cd01858 NGP_1 NGP-1. Autoanti 98.9 6E-09 1.3E-13 68.1 7.7 90 81-177 5-94 (157)
346 KOG1954 Endocytosis/signaling 98.9 1.1E-08 2.3E-13 73.6 8.9 114 16-133 57-226 (532)
347 KOG0463 GTP-binding protein GP 98.9 3.9E-09 8.6E-14 76.0 6.6 151 17-172 133-352 (641)
348 KOG2486 Predicted GTPase [Gene 98.9 4.3E-09 9.3E-14 72.8 6.3 156 15-175 134-313 (320)
349 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.1E-09 1.7E-13 73.8 8.0 88 79-175 73-161 (287)
350 PRK12288 GTPase RsgA; Reviewed 98.9 1E-08 2.3E-13 74.8 8.6 89 82-176 118-206 (347)
351 COG1161 Predicted GTPases [Gen 98.9 5.7E-09 1.2E-13 75.6 7.0 57 14-70 129-186 (322)
352 PRK09563 rbgA GTPase YlqF; Rev 98.9 6.1E-09 1.3E-13 74.5 7.1 57 15-71 119-176 (287)
353 cd01856 YlqF YlqF. Proteins o 98.9 6.1E-09 1.3E-13 69.0 6.5 56 15-71 113-170 (171)
354 cd01859 MJ1464 MJ1464. This f 98.9 7.8E-09 1.7E-13 67.4 6.9 56 15-70 99-155 (156)
355 TIGR03596 GTPase_YlqF ribosome 98.9 5.8E-09 1.3E-13 74.2 6.4 56 15-71 116-173 (276)
356 PRK00098 GTPase RsgA; Reviewed 98.9 7.1E-09 1.5E-13 74.5 6.8 87 81-175 77-164 (298)
357 KOG0448 Mitofusin 1 GTPase, in 98.9 4.4E-08 9.5E-13 75.4 11.1 115 14-133 106-276 (749)
358 TIGR03597 GTPase_YqeH ribosome 98.9 3.5E-09 7.6E-14 78.0 5.2 98 71-176 50-151 (360)
359 COG5192 BMS1 GTP-binding prote 98.8 4E-08 8.7E-13 74.4 9.7 140 16-162 68-210 (1077)
360 TIGR00092 GTP-binding protein 98.8 3.8E-08 8.2E-13 71.9 8.9 78 18-95 3-108 (368)
361 cd01851 GBP Guanylate-binding 98.8 2.5E-07 5.4E-12 63.9 12.4 84 15-98 5-105 (224)
362 cd01856 YlqF YlqF. Proteins o 98.8 1.6E-08 3.4E-13 67.0 5.8 97 69-177 3-100 (171)
363 TIGR03596 GTPase_YlqF ribosome 98.8 2E-08 4.4E-13 71.5 6.6 99 69-179 5-104 (276)
364 cd01849 YlqF_related_GTPase Yl 98.8 3.3E-08 7.2E-13 64.4 7.2 83 86-177 1-84 (155)
365 KOG0467 Translation elongation 98.8 9.3E-09 2E-13 79.7 5.1 107 15-129 7-135 (887)
366 cd01849 YlqF_related_GTPase Yl 98.8 2E-08 4.2E-13 65.5 6.0 55 15-70 98-154 (155)
367 cd01855 YqeH YqeH. YqeH is an 98.8 1.3E-08 2.7E-13 68.7 5.2 55 16-70 126-189 (190)
368 COG1618 Predicted nucleotide k 98.8 6.8E-07 1.5E-11 57.3 12.0 147 15-179 3-177 (179)
369 cd03112 CobW_like The function 98.7 8.1E-08 1.7E-12 62.7 7.5 65 60-130 86-158 (158)
370 KOG0464 Elongation factor G [T 98.7 3.2E-09 6.8E-14 77.5 1.0 112 16-132 36-168 (753)
371 KOG1491 Predicted GTP-binding 98.7 1.2E-07 2.6E-12 67.6 7.6 84 14-97 17-127 (391)
372 PRK09563 rbgA GTPase YlqF; Rev 98.7 5.8E-08 1.2E-12 69.5 6.1 100 68-179 7-107 (287)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.8E-08 1.3E-12 62.3 5.2 78 78-165 5-84 (141)
374 PRK14974 cell division protein 98.6 3.9E-07 8.4E-12 66.3 9.0 96 60-171 222-323 (336)
375 PRK12288 GTPase RsgA; Reviewed 98.6 1E-07 2.2E-12 69.8 5.5 55 19-74 207-270 (347)
376 TIGR00157 ribosome small subun 98.6 1.5E-07 3.2E-12 65.8 5.8 52 18-73 121-183 (245)
377 PRK12289 GTPase RsgA; Reviewed 98.6 1.3E-07 2.8E-12 69.2 5.7 52 19-71 174-234 (352)
378 KOG0459 Polypeptide release fa 98.6 5.1E-08 1.1E-12 70.8 3.5 155 14-171 76-279 (501)
379 TIGR03348 VI_IcmF type VI secr 98.6 5.6E-07 1.2E-11 75.6 9.6 107 20-132 114-257 (1169)
380 PF03193 DUF258: Protein of un 98.5 1.4E-07 3.1E-12 61.1 4.7 55 18-73 36-99 (161)
381 TIGR01425 SRP54_euk signal rec 98.5 1.6E-06 3.5E-11 64.9 10.5 110 16-132 99-253 (429)
382 PRK13796 GTPase YqeH; Provisio 98.5 4.7E-07 1E-11 67.0 7.5 98 72-177 57-158 (365)
383 TIGR03597 GTPase_YqeH ribosome 98.5 2.3E-07 4.9E-12 68.5 5.4 55 18-72 155-215 (360)
384 KOG1534 Putative transcription 98.5 7.3E-07 1.6E-11 59.6 7.1 113 61-177 98-250 (273)
385 KOG2423 Nucleolar GTPase [Gene 98.5 6.8E-08 1.5E-12 70.2 2.2 68 3-70 293-361 (572)
386 COG0523 Putative GTPases (G3E 98.5 2.9E-06 6.3E-11 61.4 10.5 100 61-170 85-193 (323)
387 KOG1424 Predicted GTP-binding 98.4 3E-07 6.5E-12 68.8 4.6 54 17-70 314-368 (562)
388 PRK13796 GTPase YqeH; Provisio 98.4 4.8E-07 1E-11 66.9 5.2 55 17-71 160-220 (365)
389 PF00448 SRP54: SRP54-type pro 98.4 5.2E-06 1.1E-10 56.1 9.6 67 60-133 83-155 (196)
390 cd03114 ArgK-like The function 98.4 4.5E-06 9.7E-11 53.9 8.9 58 60-129 91-148 (148)
391 PRK01889 GTPase RsgA; Reviewed 98.4 3.8E-06 8.3E-11 62.0 9.2 84 82-174 110-193 (356)
392 PRK11537 putative GTP-binding 98.4 4.1E-06 8.9E-11 60.8 8.8 88 61-159 91-186 (318)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.3 9.5E-07 2.1E-11 63.3 5.2 56 18-74 162-226 (287)
394 PRK10416 signal recognition pa 98.3 4.8E-06 1E-10 60.4 8.4 138 16-170 113-302 (318)
395 PRK00098 GTPase RsgA; Reviewed 98.3 1.5E-06 3.3E-11 62.6 5.7 56 17-73 164-228 (298)
396 TIGR00064 ftsY signal recognit 98.3 5.6E-06 1.2E-10 58.8 7.8 96 59-171 153-261 (272)
397 PRK14722 flhF flagellar biosyn 98.3 5E-06 1.1E-10 61.3 7.6 116 17-132 137-295 (374)
398 PRK11889 flhF flagellar biosyn 98.2 6.7E-06 1.5E-10 60.8 7.9 110 16-132 240-391 (436)
399 COG1162 Predicted GTPases [Gen 98.2 2E-06 4.3E-11 61.0 4.6 23 19-41 166-188 (301)
400 KOG3859 Septins (P-loop GTPase 98.2 8.6E-06 1.9E-10 56.9 6.9 118 10-132 35-190 (406)
401 COG3523 IcmF Type VI protein s 98.1 1.9E-05 4.1E-10 65.7 9.3 110 20-132 128-270 (1188)
402 PF02492 cobW: CobW/HypB/UreG, 98.1 1E-05 2.2E-10 54.0 6.6 68 61-134 85-157 (178)
403 KOG2484 GTPase [General functi 98.1 1.3E-06 2.8E-11 63.6 2.3 56 15-70 250-306 (435)
404 PRK00771 signal recognition pa 98.1 1.2E-05 2.6E-10 60.7 7.5 110 15-131 93-245 (437)
405 cd03115 SRP The signal recogni 98.1 3.2E-05 7E-10 51.3 8.7 66 60-132 82-153 (173)
406 TIGR02475 CobW cobalamin biosy 98.1 3.2E-05 7E-10 56.8 9.2 91 61-159 93-212 (341)
407 PRK10867 signal recognition pa 98.1 2.7E-05 5.7E-10 58.8 8.9 65 60-131 183-253 (433)
408 PRK14721 flhF flagellar biosyn 98.1 1.7E-05 3.7E-10 59.5 7.7 110 16-132 190-340 (420)
409 COG1419 FlhF Flagellar GTP-bin 98.1 2E-05 4.3E-10 58.2 7.8 110 16-132 202-352 (407)
410 PF09547 Spore_IV_A: Stage IV 98.1 9.5E-05 2.1E-09 54.9 10.5 24 15-38 15-38 (492)
411 PRK13695 putative NTPase; Prov 98.0 9.9E-05 2.1E-09 49.0 9.8 22 18-39 1-22 (174)
412 PF06858 NOG1: Nucleolar GTP-b 98.0 2E-05 4.3E-10 41.5 4.7 44 84-129 13-58 (58)
413 KOG0469 Elongation factor 2 [T 98.0 1.5E-05 3.2E-10 60.2 5.8 112 14-130 16-162 (842)
414 PRK12727 flagellar biosynthesi 98.0 3.5E-05 7.5E-10 59.1 7.9 109 16-132 349-498 (559)
415 cd01983 Fer4_NifH The Fer4_Nif 98.0 5.8E-05 1.3E-09 44.7 7.5 69 20-97 2-71 (99)
416 PRK12726 flagellar biosynthesi 98.0 5.1E-05 1.1E-09 56.0 8.0 23 16-38 205-227 (407)
417 TIGR00959 ffh signal recogniti 98.0 5.8E-05 1.3E-09 56.9 8.4 65 60-131 182-252 (428)
418 COG3640 CooC CO dehydrogenase 98.0 3.5E-05 7.5E-10 52.7 6.4 62 62-131 135-198 (255)
419 PF13401 AAA_22: AAA domain; P 98.0 1.7E-05 3.6E-10 50.0 4.6 24 18-41 5-28 (131)
420 KOG2485 Conserved ATP/GTP bind 97.9 1.3E-05 2.8E-10 56.8 4.2 56 15-70 141-205 (335)
421 PF05621 TniB: Bacterial TniB 97.9 0.0001 2.2E-09 52.6 8.6 114 6-128 50-190 (302)
422 cd00009 AAA The AAA+ (ATPases 97.9 0.00033 7.2E-09 44.6 10.2 34 8-41 10-43 (151)
423 COG0541 Ffh Signal recognition 97.9 8.2E-05 1.8E-09 55.3 7.9 111 14-131 97-252 (451)
424 PRK12723 flagellar biosynthesi 97.9 0.00021 4.5E-09 53.3 10.2 109 17-132 174-326 (388)
425 PRK14723 flhF flagellar biosyn 97.9 3.7E-05 7.9E-10 61.5 6.6 110 18-132 186-337 (767)
426 COG1116 TauB ABC-type nitrate/ 97.9 1.2E-05 2.5E-10 55.5 3.3 24 19-42 31-54 (248)
427 PRK05703 flhF flagellar biosyn 97.9 8.1E-05 1.7E-09 56.3 8.0 66 60-132 299-371 (424)
428 KOG1533 Predicted GTPase [Gene 97.9 1.6E-05 3.5E-10 54.2 3.8 68 60-131 96-176 (290)
429 PF13207 AAA_17: AAA domain; P 97.9 1.3E-05 2.8E-10 49.9 3.0 22 19-40 1-22 (121)
430 KOG0780 Signal recognition par 97.9 7.2E-05 1.6E-09 54.7 7.0 98 15-112 99-241 (483)
431 PRK12724 flagellar biosynthesi 97.9 0.00014 2.9E-09 54.5 8.6 109 17-132 223-373 (432)
432 COG1162 Predicted GTPases [Gen 97.8 6.7E-05 1.5E-09 53.4 6.3 88 82-176 77-165 (301)
433 PRK08118 topology modulation p 97.8 1.5E-05 3.2E-10 52.6 2.9 23 18-40 2-24 (167)
434 PF13555 AAA_29: P-loop contai 97.8 2.1E-05 4.6E-10 42.4 2.6 20 19-38 25-44 (62)
435 PRK06995 flhF flagellar biosyn 97.8 0.00013 2.9E-09 55.7 7.7 23 17-39 256-278 (484)
436 COG0563 Adk Adenylate kinase a 97.8 2E-05 4.3E-10 52.4 2.8 23 18-40 1-23 (178)
437 PRK07261 topology modulation p 97.8 2E-05 4.4E-10 52.2 2.8 22 19-40 2-23 (171)
438 PRK06731 flhF flagellar biosyn 97.8 0.00011 2.5E-09 52.0 6.6 110 16-132 74-225 (270)
439 COG3840 ThiQ ABC-type thiamine 97.8 2.7E-05 5.9E-10 51.3 3.2 28 16-43 24-51 (231)
440 COG1136 SalX ABC-type antimicr 97.8 2.8E-05 6E-10 53.3 3.3 25 19-43 33-57 (226)
441 COG1126 GlnQ ABC-type polar am 97.7 4.1E-05 8.9E-10 51.8 3.5 27 16-42 27-53 (240)
442 cd02042 ParA ParA and ParB of 97.7 0.00027 5.9E-09 42.6 6.8 80 20-107 2-83 (104)
443 COG0552 FtsY Signal recognitio 97.7 0.00036 7.8E-09 50.3 8.2 111 14-131 136-297 (340)
444 PF00005 ABC_tran: ABC transpo 97.7 3.9E-05 8.5E-10 48.8 3.1 25 18-42 12-36 (137)
445 PF13671 AAA_33: AAA domain; P 97.7 3.5E-05 7.6E-10 49.3 2.8 20 20-39 2-21 (143)
446 PF05673 DUF815: Protein of un 97.7 0.00056 1.2E-08 47.4 8.4 35 6-40 41-75 (249)
447 PRK05480 uridine/cytidine kina 97.7 4.8E-05 1E-09 52.1 3.3 27 14-40 3-29 (209)
448 cd02019 NK Nucleoside/nucleoti 97.6 5.3E-05 1.1E-09 42.2 2.7 21 20-40 2-22 (69)
449 PRK06547 hypothetical protein; 97.6 9.2E-05 2E-09 49.0 4.2 33 8-40 6-38 (172)
450 TIGR00235 udk uridine kinase. 97.6 5.3E-05 1.2E-09 51.8 3.1 27 14-40 3-29 (207)
451 PF03266 NTPase_1: NTPase; In 97.6 5.9E-05 1.3E-09 49.7 3.0 132 19-166 1-163 (168)
452 PF13521 AAA_28: AAA domain; P 97.6 3.8E-05 8.3E-10 50.4 2.0 22 19-40 1-22 (163)
453 PF05729 NACHT: NACHT domain 97.6 0.0005 1.1E-08 44.9 7.3 21 20-40 3-23 (166)
454 COG1120 FepC ABC-type cobalami 97.6 5.3E-05 1.1E-09 53.0 2.7 21 19-39 30-50 (258)
455 COG3839 MalK ABC-type sugar tr 97.6 6.9E-05 1.5E-09 54.5 3.3 23 20-42 32-54 (338)
456 TIGR00554 panK_bact pantothena 97.6 0.00011 2.3E-09 52.7 4.0 31 8-38 53-83 (290)
457 PRK01889 GTPase RsgA; Reviewed 97.5 7.3E-05 1.6E-09 55.3 3.2 25 18-42 196-220 (356)
458 cd03111 CpaE_like This protein 97.5 0.00042 9.1E-09 42.1 6.0 97 24-127 7-106 (106)
459 PHA00729 NTP-binding motif con 97.5 0.00015 3.3E-09 49.8 4.3 35 6-40 6-40 (226)
460 PRK06217 hypothetical protein; 97.5 7.8E-05 1.7E-09 50.0 2.9 23 18-40 2-24 (183)
461 PF00004 AAA: ATPase family as 97.5 6.9E-05 1.5E-09 47.1 2.5 21 20-40 1-21 (132)
462 cd04178 Nucleostemin_like Nucl 97.5 7.2E-05 1.6E-09 49.6 2.5 47 86-135 1-47 (172)
463 KOG0057 Mitochondrial Fe/S clu 97.5 0.00047 1E-08 52.8 7.0 25 15-39 376-400 (591)
464 smart00382 AAA ATPases associa 97.5 9.2E-05 2E-09 46.8 3.0 25 18-42 3-27 (148)
465 cd02038 FleN-like FleN is a me 97.5 0.00055 1.2E-08 43.7 6.5 104 22-130 5-109 (139)
466 PF03205 MobB: Molybdopterin g 97.5 8.8E-05 1.9E-09 47.4 2.7 22 19-40 2-23 (140)
467 PRK10078 ribose 1,5-bisphospho 97.5 9.3E-05 2E-09 49.7 3.0 23 19-41 4-26 (186)
468 PRK08233 hypothetical protein; 97.5 0.00011 2.3E-09 49.1 3.2 24 17-40 3-26 (182)
469 PRK14530 adenylate kinase; Pro 97.5 0.0001 2.2E-09 50.8 3.1 22 18-39 4-25 (215)
470 PF04665 Pox_A32: Poxvirus A32 97.5 7.9E-05 1.7E-09 51.7 2.5 29 12-40 8-36 (241)
471 cd00071 GMPK Guanosine monopho 97.5 9.6E-05 2.1E-09 47.1 2.7 21 20-40 2-22 (137)
472 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00013 2.7E-09 48.6 3.3 27 16-42 24-50 (177)
473 PF13238 AAA_18: AAA domain; P 97.5 0.0001 2.3E-09 46.1 2.8 21 20-40 1-21 (129)
474 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00011 2.3E-09 50.7 3.0 25 17-41 30-54 (218)
475 COG1117 PstB ABC-type phosphat 97.5 8.5E-05 1.8E-09 50.2 2.4 19 20-38 36-54 (253)
476 KOG2743 Cobalamin synthesis pr 97.5 0.0015 3.2E-08 46.6 8.5 21 21-41 61-81 (391)
477 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00011 2.4E-09 44.4 2.6 22 17-38 15-36 (107)
478 cd03238 ABC_UvrA The excision 97.5 0.00012 2.5E-09 48.7 3.0 24 16-39 20-43 (176)
479 PRK03839 putative kinase; Prov 97.5 0.00011 2.4E-09 49.1 2.9 22 19-40 2-23 (180)
480 COG4525 TauB ABC-type taurine 97.5 0.0001 2.2E-09 49.2 2.6 23 18-40 32-54 (259)
481 COG3842 PotA ABC-type spermidi 97.4 0.00013 2.8E-09 53.4 3.3 24 20-43 34-57 (352)
482 PF00437 T2SE: Type II/IV secr 97.4 0.00015 3.2E-09 51.7 3.5 25 16-40 126-150 (270)
483 TIGR00960 3a0501s02 Type II (G 97.4 0.00012 2.6E-09 50.3 3.0 25 17-41 29-53 (216)
484 cd03225 ABC_cobalt_CbiO_domain 97.4 0.00013 2.7E-09 50.1 3.0 25 17-41 27-51 (211)
485 cd03261 ABC_Org_Solvent_Resist 97.4 0.00013 2.7E-09 50.9 3.0 24 18-41 27-50 (235)
486 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00017 3.6E-09 49.2 3.6 25 17-41 26-50 (205)
487 TIGR02322 phosphon_PhnN phosph 97.4 0.0001 2.3E-09 49.1 2.5 22 19-40 3-24 (179)
488 TIGR01166 cbiO cobalt transpor 97.4 0.00014 3E-09 49.1 3.0 24 18-41 19-42 (190)
489 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00013 2.9E-09 48.9 3.0 22 17-38 3-24 (188)
490 PRK14738 gmk guanylate kinase; 97.4 0.00018 3.8E-09 49.2 3.5 27 14-40 10-36 (206)
491 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.6E-09 48.4 2.7 21 19-39 3-23 (169)
492 cd03264 ABC_drug_resistance_li 97.4 0.00012 2.6E-09 50.2 2.7 23 19-41 27-49 (211)
493 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.00012 2.7E-09 51.0 2.7 22 19-40 32-53 (254)
494 TIGR02673 FtsE cell division A 97.4 0.00014 3E-09 50.0 3.0 25 17-41 28-52 (214)
495 cd03292 ABC_FtsE_transporter F 97.4 0.00014 3.1E-09 49.9 3.0 25 17-41 27-51 (214)
496 cd03269 ABC_putative_ATPase Th 97.4 0.00014 3.1E-09 49.8 3.0 26 16-41 25-50 (210)
497 cd02023 UMPK Uridine monophosp 97.4 0.00011 2.4E-09 49.8 2.4 21 20-40 2-22 (198)
498 COG3638 ABC-type phosphate/pho 97.4 0.00013 2.8E-09 50.0 2.7 21 19-39 32-52 (258)
499 PRK05439 pantothenate kinase; 97.4 0.00024 5.3E-09 51.3 4.2 33 7-39 76-108 (311)
500 cd03262 ABC_HisP_GlnQ_permease 97.4 0.00015 3.2E-09 49.8 3.0 26 16-41 25-50 (213)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=6.4e-39 Score=213.97 Aligned_cols=180 Identities=51% Similarity=0.926 Sum_probs=155.1
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+.+..++....++.+||+++|+++||||||++++..+.+..+.+|.+.+...+..+...+.+||+||++++...|..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88777666666667788999999999999999999999888777778889888888888999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++|+|+|+++++++.....++...+......+.|+++++||.|+.+.....++.+.++........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999998888888876544467999999999999877666777776665443345566889999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++|+||.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999988764
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.9e-38 Score=211.11 Aligned_cols=180 Identities=51% Similarity=0.909 Sum_probs=154.7
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+.+.+++....++.+||+++|++|+|||||++++..+.+..+.+|.+.++..+....+.+.+|||||++++...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88888888888888888999999999999999999998887777778888887777788899999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++|+|+|+++++++.....++...+......+.|+++|+||.|+.+.....++...++........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888876544456899999999999766556666666665444445667889999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|.|++++|+||.+.+.+.
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=3.9e-37 Score=204.64 Aligned_cols=174 Identities=55% Similarity=0.962 Sum_probs=146.5
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.++... ..++.+||+++|++|+|||||++++..+.+..+.+|.+.....+..+...+.+||+||+.++...+..
T Consensus 1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 76 (175)
T smart00177 1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRH 76 (175)
T ss_pred Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 66654323 33567999999999999999999998777766778888887777788899999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++++|+|++++.++.....++..++......+.|+++|+||.|+.+.....++.+.++........+.++++||
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence 99999999999999999999999999998876544457999999999999766556666666665544455677889999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++|+||.+.+.
T Consensus 157 ~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 157 TSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999988764
No 4
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=203.59 Aligned_cols=164 Identities=23% Similarity=0.336 Sum_probs=136.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+-+||+|+|+.|+|||+|+.++.++.+++ +..|+|+.+..-+. +.+++++|||+||++|+..+.+|++++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 466999999999999999999999999987 66888877654333 5689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE-EEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH-IQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~gi~~ 168 (183)
+|||+++.+||.++..|+.++..+.. .++|.++|+||+|+.+.... ....+...+...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v---~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVV---STEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheec---CHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999976643 56899999999998654322 111122222344556 99999999999999
Q ss_pred HHHHHHHhhhccCC
Q 030113 169 GLEWISQRVTGKAP 182 (183)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (183)
.|..+...+..+.+
T Consensus 163 ~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 163 AFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887654
No 5
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=7e-37 Score=202.07 Aligned_cols=162 Identities=50% Similarity=0.946 Sum_probs=139.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+.++|+++|++|+|||||++++..+.+..+.+|.+.....+......+++|||||++++...+..+++++|++++|||
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 35679999999999999999999988877777788888877777788999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++.+...++...+......+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+||
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999999888765444578999999999997665666777766544434456689999999999999999999
Q ss_pred HH
Q 030113 174 SQ 175 (183)
Q Consensus 174 ~~ 175 (183)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 75
No 6
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.2e-37 Score=195.28 Aligned_cols=180 Identities=52% Similarity=0.933 Sum_probs=173.3
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||..++.++.....+++.+|+++|-.++||||+++++-.++...+.||+|++.+.+.+++..+.+||.+||++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+++.+++|||+|.+|.+++.+....+..++.+....+.|+++.+||.|+.......++.+.++........+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999999988889999999999999999999999999998888889999999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+|+|+.|.++|+.+.+.++
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999998765
No 7
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=9.6e-36 Score=197.88 Aligned_cols=171 Identities=65% Similarity=1.151 Sum_probs=146.6
Q ss_pred hHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC
Q 030113 5 VSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG 84 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (183)
...+++.+.+.+.++|+++|++|+|||||++++..+.+..+.++.+.++..+..+...+.+||+||++++...+..+++.
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 82 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTN 82 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhc
Confidence 34566666666789999999999999999999998888778888888888888889999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
+|++++|+|+++++++.....++..++......+.|+++++||+|+.......++.+.++........++++++||++|+
T Consensus 83 ~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 83 TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 99999999999999998888888888766545679999999999997655556666666644444556789999999999
Q ss_pred CHHHHHHHHHH
Q 030113 165 GLVDGLEWISQ 175 (183)
Q Consensus 165 gi~~~~~~i~~ 175 (183)
|++++|++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=6.4e-36 Score=195.93 Aligned_cols=158 Identities=55% Similarity=0.989 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++++|||||++++..+.+..+.+|.+.....+......+.+||+||++++...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999887777777888888777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.++.....++..+.......+.|+++++||.|+.+.....++.+.+.........+.++++||++|.|++++|+||.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998988876544456899999999999765455555555544433445677899999999999999999975
No 9
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=195.62 Aligned_cols=164 Identities=22% Similarity=0.391 Sum_probs=142.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.+|++++|+.++||||||++++.+.|.. +.+|+|+.+.. +.+ ..+++++|||+||++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 3456999999999999999999999998866 67899977654 333 458999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|||+++..||.....|+..+.......++.+++|+||.||.+. .++..+++...++..++.|.++||+.|+||++
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 999999999999999999999999887777999999999999866 44455555555566777899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|..|...+.+.
T Consensus 176 lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 176 LFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHhccCc
Confidence 999999888765
No 10
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.2e-35 Score=195.83 Aligned_cols=172 Identities=43% Similarity=0.770 Sum_probs=156.5
Q ss_pred HHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC
Q 030113 6 SKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG 84 (183)
Q Consensus 6 ~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (183)
+.+++.... ++.++|+++|+.|+||||+++++..+....+.||.|.+...+.+.+..+.+||++|+..++..|..++++
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 445566554 8999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC-CCceEEEEeecccC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK-NHDWHIQACSALTG 163 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~ 163 (183)
+|++|||+|.++.+.+.+....+..++......++|+++++||.|+.+.....++...+...... ...+.++.||+.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999999999999999988777789999999999998888888888888766555 67889999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
+|+.+.++||.+++
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999999875
No 11
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=195.27 Aligned_cols=162 Identities=25% Similarity=0.431 Sum_probs=138.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeEEEEE--c--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVY--K--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|+.++|||||+.|+..+.|.++ .+|+|..+..... . .+++++|||+|++++..+-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 5679999999999999999999999999885 7888866554333 3 489999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||+++.+||.....|+..+-.... +++.+.+|+||+||.. ....++..... ...+..|+++||+++.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCCEEEEEecccccCHH
Confidence 99999999999999999999977655 7888999999999976 33444433333 3356679999999999999
Q ss_pred HHHHHHHHhhhccCC
Q 030113 168 DGLEWISQRVTGKAP 182 (183)
Q Consensus 168 ~~~~~i~~~~~~~~~ 182 (183)
++|..|.+.++...+
T Consensus 157 ~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHHhccCccc
Confidence 999999999987754
No 12
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=2.1e-35 Score=184.29 Aligned_cols=179 Identities=40% Similarity=0.720 Sum_probs=161.1
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||.+ +-..+.-.+++.++|+++|..|+||||+++++.+.......||.++++.++.++...+++||++||..++..|.+
T Consensus 1 mg~l-silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 1 MGLL-SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred CcHH-HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 4443 444455556779999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (183)
||+.+|++|+|+|.+++.++++....+...+......+.|++++.||.|+.......++...+..... +...++++.||
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 99999999999999999999999999999988777778999999999999988888888887776555 67899999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+.+|+++.+.++|+++.+.++
T Consensus 160 ~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 13
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=4.4e-35 Score=194.63 Aligned_cols=166 Identities=45% Similarity=0.780 Sum_probs=139.9
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..-.+...++|+++|++|+|||||++++.+..+....++.+.....+..+...+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 33445677999999999999999999999887777778888777777788899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+|++++.++.....++..++......+.|+++|+||+|+.+.....+..+.+.........++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999988888888876544567999999999999766555666555544333345778999999999999999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
|+++++
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999875
No 14
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=5.2e-35 Score=193.53 Aligned_cols=164 Identities=45% Similarity=0.833 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++++|||||++++.+..+..+.+|.+.....+.+....+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999988777778888888778888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++.+...|+..+.......+.|+++|+||+|+.+.....+..+.+..... ....+.+++|||++|.|++++|+||.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987654456899999999999766555555555432221 12245789999999999999999999988
Q ss_pred hccCC
Q 030113 178 TGKAP 182 (183)
Q Consensus 178 ~~~~~ 182 (183)
.+..+
T Consensus 161 ~~~~~ 165 (169)
T cd04158 161 VAAGV 165 (169)
T ss_pred hhccc
Confidence 77654
No 15
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.9e-34 Score=189.87 Aligned_cols=173 Identities=32% Similarity=0.501 Sum_probs=145.6
Q ss_pred hHHHhhhcC-CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc
Q 030113 5 VSKFWFMLF-PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 5 ~~~~~~~~~-~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
+.+++.++. .++.++|+++|++|+|||||++++.++.+..+.++.+.....+..++.++.+||+||+..+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 345566543 3788999999999999999999999887766667777777777788899999999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC-------CCceEEE
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK-------NHDWHIQ 156 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 156 (183)
++|++++|+|++++.++.....++..++......+.|+++|+||.|+.......++.+.++..... .....++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999999998888888888765445679999999999997766777777777644321 2466799
Q ss_pred EeecccCCCHHHHHHHHHHhh
Q 030113 157 ACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+|||+++.|++++++||.+++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EeecccCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 16
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-35 Score=191.72 Aligned_cols=164 Identities=22% Similarity=0.356 Sum_probs=136.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....+||+++|+++||||+++.++..+.+.. ...|+|+.+.. +.. ..+.+++|||+||++++.....|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 3567999999999999999999999998865 56788866644 333 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
++|||+++..||+++..|+..+-.+.. .++|.++|+||+|+... ..+....++..+...+++|+++||++|.||++
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 999999999999999998888866644 58999999999998653 22233333333345678899999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
.|-.+++.+.++.
T Consensus 165 aF~~La~~i~~k~ 177 (207)
T KOG0078|consen 165 AFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999888654
No 17
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=1e-33 Score=185.48 Aligned_cols=157 Identities=51% Similarity=0.941 Sum_probs=130.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++++|||||++++..+.+....++.+.+...+......+.+|||||+.++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 58999999999999999998887777778888777777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++...+......+.|+++|+||+|+.+.....++.+.+........+.+++++||+++.|++++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777777665444457999999999999765545555555544333344568999999999999999999875
No 18
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-34 Score=193.61 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=128.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|+.|+|||||++++..+.+.. +.++.+..+ ..+..+ .+.+++|||+|++++...+..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887754 335555443 233333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.+|+.+..|+..+..+. ++.|+++|+||.|+... ....+..... +..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 57999999999999643 2222222222 2345679999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++++.+..+.
T Consensus 157 ~~F~~l~~~i~~~~ 170 (189)
T cd04121 157 ESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2e-34 Score=194.61 Aligned_cols=159 Identities=19% Similarity=0.296 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++|+++|+.|+|||||++++..+.+.. +.+|.+..+ ..+..+ .+.+++|||+|++++...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 478999999999999999999988865 456666444 344554 488999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|+++++||+.+..|+..+... ...+.|+++|+||+|+.+.... .+..+.+.. ...++.+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888765433 3457999999999998643221 111111111 11245799999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.++
T Consensus 157 ~l~~~~~~~ 165 (202)
T cd04120 157 KLVDDILKK 165 (202)
T ss_pred HHHHHHHHh
Confidence 999988654
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6e-35 Score=181.83 Aligned_cols=164 Identities=24% Similarity=0.390 Sum_probs=141.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCc-ccceeEE----EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-VGSNVEE----LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||++||.+|+|||||+.++..+.+.+..++ +|+.+.. +..+..++.+|||+||++|+.+.++|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999998776554 7755432 3336789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++..++|..+..|+.++-.+...+++..++|+||+|... ...+..+++...++.+.+-|++|||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999998888888899999999999643 2445556666666777888999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+.++..+.+.+
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999998765
No 21
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=184.63 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=140.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE----EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE----ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|+.++|+.|+|||+|+.+++.+.|.+ ...|+|+.+. .++.+.+++++|||+||+.+.....+|++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 457899999999999999999999999866 5577776653 34446799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||+++.++|..+..|+..+.++. ..+..+++++||+||... +++..+++..+++.++..++++||++++|++|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999998875 478999999999998644 355666666666778888999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|..+...+.+.
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 22
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=2.5e-33 Score=184.38 Aligned_cols=158 Identities=46% Similarity=0.775 Sum_probs=129.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--ccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--VTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
+|+++|++|+|||||++++.+... ..+.++.+.....+......+.+|||||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 346688887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 97 RARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.++.....++..+..... ..+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888887765432 24799999999999976555555555554332233456799999999999999999987
Q ss_pred Hh
Q 030113 175 QR 176 (183)
Q Consensus 175 ~~ 176 (183)
++
T Consensus 161 ~~ 162 (162)
T cd04157 161 AQ 162 (162)
T ss_pred cC
Confidence 53
No 23
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.2e-34 Score=195.59 Aligned_cols=161 Identities=22% Similarity=0.283 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++|+|||||++++..+.+..+.+|.+..+.........+.+|||+|++.+...+..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777888877666666778999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC---------------------CCHHHHHhhcCcCc---------
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA---------------------MTPAEITDALSLHS--------- 147 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~---------------------~~~~~~~~~~~~~~--------- 147 (183)
++|..+..|+..+.... ..+.|+++|+||+|+.+. ...++..+......
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999999998886542 356899999999998641 11112111111000
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.....++|++|||++|.||+++|..+++.+.+
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00123679999999999999999999987653
No 24
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=2.9e-33 Score=187.30 Aligned_cols=166 Identities=41% Similarity=0.721 Sum_probs=133.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.+||+++|++|||||||++++..+.+....++.+........ ....+.+|||||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999988877666777755544433 45889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|+|++++.++.....++..+.......+.|+++|+||+|+.+.....+....+..... ....++++++||+++.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999889888888887776554567999999999998755444555444432221 223467999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
++++.+.+.+..
T Consensus 162 ~~~l~~~l~~~~ 173 (183)
T cd04152 162 LEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999998886543
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.7e-34 Score=190.41 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+..+ ...+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 5799999999999999999999888864 5566664443 33343 467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.+|..+..|+..+.......+.|+++|+||.|+.+.... .+....+ .+..++++++|||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL----AREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH----HHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999887666544333457999999999998543211 1111111 123456899999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.+.
T Consensus 158 ~l~~~~~~~ 166 (172)
T cd04141 158 GLVREIRRK 166 (172)
T ss_pred HHHHHHHHh
Confidence 999887754
No 26
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=5.2e-33 Score=183.56 Aligned_cols=157 Identities=36% Similarity=0.602 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
+|+++|++|+|||||++++.+.....+.+|.+.....+..+...+++||+||+.++...+..+++++|++++|||+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47899999999999999999874445778888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC---CCceEEEEeecccC------CCHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK---NHDWHIQACSALTG------DGLVDG 169 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~------~gi~~~ 169 (183)
++.....++..+.......+.|+++|+||.|+.+.....++.+.+...... ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876555679999999999998776666666665543322 23568899999998 899999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 27
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=6.7e-33 Score=186.82 Aligned_cols=164 Identities=34% Similarity=0.570 Sum_probs=139.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+..+|+++|++|+|||||++++.+..+..+.++.+.....+.+.+..+.+||+||+..+...+..+++++|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 35689999999999999999999998887777778887777888888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-----------CCCceEEEEeeccc
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-----------KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~S~~~ 162 (183)
+++.+++.....++..+.......+.|+++++||+|+.......++.+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999899888888888887655567999999999999766666677666653221 12346799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|+|++++|+|+.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998764
No 28
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=6.9e-33 Score=181.56 Aligned_cols=157 Identities=55% Similarity=0.974 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
||+++|++|+|||||++++.+.......++.+.....+.+....+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998777888888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++..+.......+.|+++++||+|+.......++.+.+.........++++++|+++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877655578999999999999876666677776665433456778999999999999999999875
No 29
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-33 Score=169.71 Aligned_cols=179 Identities=49% Similarity=0.919 Sum_probs=170.3
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||+-++.+....+..++++|+.+|-.++||||++.++.-+....+.+|+|+++..+.++.+.+.+||++|+.+.+.+|..
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78888888888899999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+....++|+|+|..+.+.+++.+..+.+++++....+.|+++..||-|+.....++++.+.++....+...+-+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
.+|+|+.|-+.|+.+.+.+
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999987653
No 30
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.2e-34 Score=192.49 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=124.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..+||+++|+.++|||||+.++..+.+.. +.+|.+..+.. +.. ..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999988854 56777654431 222 457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHh--------hcCcCccCCCc-eEEEEeec
Q 030113 92 IDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITD--------ALSLHSIKNHD-WHIQACSA 160 (183)
Q Consensus 92 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~--------~~~~~~~~~~~-~~~~~~S~ 160 (183)
||++++.||+.+.. |...+... ..+.|+++|+||.|+.+.....+ +.+ ..+.......+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 55545433 25799999999999965422111 111 01111112223 58999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++|+++++.+...
T Consensus 160 k~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988764
No 31
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=183.45 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=134.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+..-+||.++|++|+|||||++++....|.. +..|+|..+.. +.. ..+.+++|||+||++|+++-..+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 4566999999999999999999999998865 66788855543 333 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCC---CCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDL---QHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++|||++++.||+.+..|-.+++.+... ...|+||++||+|+.... ......+..+ ...++|||++|||
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----s~gnipyfEtSAK 161 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----SKGNIPYFETSAK 161 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----hcCCceeEEeccc
Confidence 9999999999999999999998866543 358999999999986532 2222222222 2358899999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+..||+++|+.+......+.
T Consensus 162 ~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 162 EATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccHHHHHHHHHHHHHhcc
Confidence 99999999999998877654
No 32
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.9e-32 Score=182.04 Aligned_cols=165 Identities=42% Similarity=0.763 Sum_probs=140.0
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
....+.++|+++|++|+|||||++++.+..+....++.+.+...+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred hccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 34456899999999999999999999998877777888888778888889999999999999988999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|+++..++.....++..........+.|+++++||+|+.+.....++.+.++........++++++||++|+|++++|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 99999888888888888877655456799999999999976666666666666544444556789999999999999999
Q ss_pred HHHHh
Q 030113 172 WISQR 176 (183)
Q Consensus 172 ~i~~~ 176 (183)
||+++
T Consensus 169 ~l~~~ 173 (173)
T cd04155 169 WVCKN 173 (173)
T ss_pred HHhcC
Confidence 99763
No 33
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.6e-34 Score=189.54 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=125.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...+||+++|++|+|||||++++..+.+.. +.+|.+..+. .+.. ..+.+.+|||+|++++...+..+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3567899999999999999999999988865 5567664442 2333 4578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCc-eEEEEe
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHD-WHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (183)
+|||++++.||..+ ..|+..+.... ++.|+++|+||.|+.+... ...+....+...++..+ .+|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 57777665442 5799999999999854210 00111111222223344 489999
Q ss_pred ecccCCC-HHHHHHHHHHhhhc
Q 030113 159 SALTGDG-LVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~g-i~~~~~~i~~~~~~ 179 (183)
||++|+| |+++|+.+++...+
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 160 SALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 99999999886543
No 34
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=1.3e-32 Score=180.69 Aligned_cols=157 Identities=44% Similarity=0.766 Sum_probs=130.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+|+++|++|+|||||++++.+..+....++.+.....+.. ....+.+||+||+..+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777888776665555 357899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC-ccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH-SIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.++.....++..++......+.|+++|+||+|+.......++...+... .....++++++|||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999998888888766544679999999999997655556665554422 22235668999999999999999999864
No 35
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.2e-33 Score=187.27 Aligned_cols=160 Identities=23% Similarity=0.247 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++++|||||+.++..+.+.. +.+|.+..+. .+.. ..+++.+|||+|++++...+..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999998865 5677765443 2222 35889999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-------HHHHHhhcCcCccCCCce-EEEEeecccCC
Q 030113 94 STDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-------PAEITDALSLHSIKNHDW-HIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (183)
+++++||..+ ..|+..+.... .+.|+++|+||.|+.+... ...+....+.......+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57777765443 4799999999999954311 000111111112222333 69999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
||+++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997643
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=189.33 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=128.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-E--EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-E--LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...+||+++|++|+|||||++++.++.+.. +.++.+..+. . +......+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 456899999999999999999999887754 4566665443 2 22245678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.+|+.+..|+..+.......+.|+++|+||.|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888765545679999999999985432 221211111 12245799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++++.+.+.-
T Consensus 158 ~~~~l~~~l~~~~ 170 (189)
T PTZ00369 158 AFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3e-33 Score=187.03 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=127.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE------------cCeEEEEEEcCCChhhHhhHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY------------KNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
+.+||+++|++|||||||++++.++.+.. +.++.+..+.. +.+ ....+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999887755 45666654432 222 2378999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 99999999999999999999999999888766544457899999999998643 22222222221 224579999
Q ss_pred ecccCCCHHHHHHHHHHhhhcc
Q 030113 159 SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
||++|.|++++|+++++.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.4e-33 Score=184.37 Aligned_cols=162 Identities=20% Similarity=0.267 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|+.|+|||||++++..+.+.. +.+|.+..+. .+..+ .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988765 6678876653 34444 478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|++++++|..+..|+..+..... ...| ++|+||+|+..... .....+ ......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888765432 3466 68899999853211 111111 111111233468999999999999999
Q ss_pred HHHHHHhhhccCC
Q 030113 170 LEWISQRVTGKAP 182 (183)
Q Consensus 170 ~~~i~~~~~~~~~ 182 (183)
|+++++.+.+.++
T Consensus 158 f~~l~~~l~~~~~ 170 (182)
T cd04128 158 FKIVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHHHhcCC
Confidence 9999998877554
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=9.8e-33 Score=182.06 Aligned_cols=157 Identities=25% Similarity=0.405 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|||||||++++..+.+.. ..++.+.......+ ....+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999998777543 56777766554433 3578999999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+..+.. .....+++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999988888876654 279999999999986433222221111 234567999999999999999999
Q ss_pred HHHhhhccC
Q 030113 173 ISQRVTGKA 181 (183)
Q Consensus 173 i~~~~~~~~ 181 (183)
+++.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999987654
No 40
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.9e-33 Score=183.30 Aligned_cols=157 Identities=25% Similarity=0.390 Sum_probs=124.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999888755 3445555443 2333 346889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++.+|..+..|+..+.... .++.|+++|+||+|+.... ...+..+.. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999988775542 3568999999999986542 222322222 223568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|.++++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 41
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=2.2e-32 Score=180.04 Aligned_cols=155 Identities=32% Similarity=0.521 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.|+++|++|+|||||++++.++.+.. +.+|.+.....+.....++.+||+||++++...+..+++++|++++|||++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37899999999999999999886644 56787877777777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC-ccCCCceEEEEeeccc------CCCHHHHH
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH-SIKNHDWHIQACSALT------GDGLVDGL 170 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~~~------~~gi~~~~ 170 (183)
.++.....|+..+.... .++|+++|+||.|+.......++...+... .....+++++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999988888886543 579999999999997666555554444322 2244578899999998 99999999
Q ss_pred HHHHH
Q 030113 171 EWISQ 175 (183)
Q Consensus 171 ~~i~~ 175 (183)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98764
No 42
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-32 Score=185.02 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... .+.+.+|||||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999887755 5577765432 33333 57899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 92 IDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
||++++.+|..+..|+..+.... ...+.|+++|+||.|+.+ .....+..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999988877664321 235689999999999963 33333433333211 1247999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++|+++++.+.+..
T Consensus 157 ~e~f~~l~~~l~~~~ 171 (201)
T cd04107 157 EEAMRFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 43
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=172.94 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=130.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+|++|+|+..+|||||+.++++..|.. ...|.|+.+.-... +.+++++|||+|+++++.+.-.++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 45799999999999999999999998865 66788876543322 46899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|||+++.+||..+..|...+.. ....+.|+|+++||+|+.++.. ...+.+.+ +..||++||+.+.|
T Consensus 100 myDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~L--------GfefFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSERVISHERGRQLADQL--------GFEFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccceeeeHHHHHHHHHHh--------ChHHhhhccccccc
Confidence 9999999999999999988854 4678899999999999976532 22333333 44699999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++.+|+.++..+-+.
T Consensus 171 Vk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 171 VKQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877654
No 44
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=6.9e-32 Score=178.37 Aligned_cols=157 Identities=43% Similarity=0.684 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc-------ccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV-------VTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+|+++|++|+|||||++++.+... ..+.++.+.....+.+++..+.+|||||+..+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975422 2345677777777888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--IKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++++++.....++..+.......+.|+++++||+|+.+.....+..+.+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556799999999999876655555555544322 1234678999999999999999
Q ss_pred HHHHHH
Q 030113 170 LEWISQ 175 (183)
Q Consensus 170 ~~~i~~ 175 (183)
++||++
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.5e-33 Score=182.20 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+.. +.++.+..+. .+... ...+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 3689999999999999999999877654 4455553322 33333 467789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++..+++.+..|+..+.......+.|+++|+||+|+.+... ..+. +.+. +..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999999887665556799999999999965322 1221 1121 1223579999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
.++++.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.3e-32 Score=180.83 Aligned_cols=161 Identities=24% Similarity=0.352 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||+++++++.+.. +.++.+..+. .+... ..++++|||||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998864 5577765553 23333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++..+..|+..+.........|+++|+||.|+.+........+. ........+.+++++||++|.|++++|+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD-AIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHH-HHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999998888766544345789999999998543221100100 001111223579999999999999999999
Q ss_pred HHhhhcc
Q 030113 174 SQRVTGK 180 (183)
Q Consensus 174 ~~~~~~~ 180 (183)
++.+.+.
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9987654
No 47
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8e-33 Score=182.10 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+.. +.++.+.. ...+..+ ...+.+|||||++++...+..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999887754 34444422 2334343 3678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++.+++.+..|+..+.......+.|+++|+||+|+.+.... .+....+.. ..+.+++++||+++.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999998888876555567999999999998643211 111111211 12368999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
+++.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98865
No 48
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.4e-33 Score=183.71 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+. .+.+|.+..+. .+..++ +.+.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 78999999999999999999998884 45677765543 333443 788999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhcCcCccC-CCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-I--------TDALSLHSIK-NHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~S~~~ 162 (183)
++++++|+.+.. |+..+... .++.|+++|+||.|+.+.....+ + ....+..... ...+++++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 55555433 25799999999999854321100 0 0000111111 2236899999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|++++|+.+++..
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4e-32 Score=186.18 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=129.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|||||||++++..+.+.. +.++.+..+....+ ..+.+.+|||+|++++...+..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 677999999999999999999998887754 66788766654433 3579999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++.+|..+..|+..+.... .+.|+++|+||+|+..... ..+. +.. ...++++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHH-----HhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999988876542 5799999999999854322 2222 111 22456799999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++++.+.+.
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999988754
No 50
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.7e-33 Score=184.70 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=120.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++||+++|++|+|||||++++.++.++. +.+|.+..+. .+.. ..+.+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 3789999999999999999999988765 4566654432 2233 4578999999999999999999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCce-EEEEeecc
Q 030113 93 DSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHDW-HIQACSAL 161 (183)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 161 (183)
|+++++||+.+ ..|+..+.... ++.|+++|+||.|+.+... ...+....+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 56776665442 5799999999999854210 000111112222233343 79999999
Q ss_pred cCCC-HHHHHHHHHHhhh
Q 030113 162 TGDG-LVDGLEWISQRVT 178 (183)
Q Consensus 162 ~~~g-i~~~~~~i~~~~~ 178 (183)
+|+| |+++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988544
No 51
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.6e-33 Score=189.55 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...+||+++|+.|||||||++++..+.+.. +.+|++..+.. +.. ..+.+.+|||+|++.+......+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 356899999999999999999999988765 45676654432 222 45889999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCcCccCCCce-EEEEee
Q 030113 91 VIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSLHSIKNHDW-HIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (183)
|||++++.+|..+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777765432 4689999999999853210 011111112222233445 699999
Q ss_pred cccCC-CHHHHHHHHHHhhhcc
Q 030113 160 ALTGD-GLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~-gi~~~~~~i~~~~~~~ 180 (183)
|++|+ |++++|+.++..+.++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999877654
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-32 Score=186.32 Aligned_cols=159 Identities=27% Similarity=0.481 Sum_probs=127.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+.. +.. ..+.+++|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988765 44666654432 333 24689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++++|+.+..|+..+.........|+++|+||.|+.+... ..+. +.+. +..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999887654445688999999999865322 2222 2221 22346899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|++|++.+.++
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.6e-32 Score=179.66 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=126.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. +.++.+..+. .+... ...+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999988755 4566665443 33333 3688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+.+++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888776542 3578999999999996532 222222222 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|+++++.+.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.1e-32 Score=179.09 Aligned_cols=156 Identities=22% Similarity=0.381 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+||++|++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999988754 4566665443 2322 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+..+.. ...+++++++||+++.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999888875432 34689999999999865422 22222211 1234579999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 55
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.5e-32 Score=176.95 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++.++.+.. +.++.+..+ ..+..+ ...+.+|||+|++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999887654 445554332 223333 356889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|+++..++..+..|+..+.......+.|+++|+||+|+.+... ..+..... +..+.+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888887665556799999999999865322 22222221 12345799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.6e-32 Score=178.59 Aligned_cols=154 Identities=19% Similarity=0.330 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++|+++|++|+|||||++++.++.+.. +.++.+..+. .+... ...+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999888755 4677775543 34443 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++++|..+..|+..+.... ..+.|+++|+||.|+...... .+....+. +..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776542 346999999999998654321 12222222 22335799999999999999999
Q ss_pred HHHHh
Q 030113 172 WISQR 176 (183)
Q Consensus 172 ~i~~~ 176 (183)
+|++.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 57
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.8e-31 Score=176.35 Aligned_cols=156 Identities=23% Similarity=0.355 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988754 4566665443 2333 3578899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCC----CCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDL----QHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
|++++.++..+..|+..+...... .+.|+++|+||+|+.+. ....+..... ...+.+++++||+++.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999998888888665432 56999999999998632 2222222221 122357999999999999
Q ss_pred HHHHHHHHHhhh
Q 030113 167 VDGLEWISQRVT 178 (183)
Q Consensus 167 ~~~~~~i~~~~~ 178 (183)
+++|+++.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 58
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-33 Score=170.62 Aligned_cols=160 Identities=24% Similarity=0.361 Sum_probs=134.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+||+++|+.|+|||+|++++..+-|++ ...|+|+.+.. +.. +.+++++|||+|+++|++...+|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 34899999999999999999999998876 66788866543 333 56899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||++...+|+.+..|+.++-++.. ..+--|+|+||.|+.+. .++.+..+....+.....|.++||++.+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999999976543 45777999999998654 4455555555555566679999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
..+...+..
T Consensus 162 ~~~a~rli~ 170 (213)
T KOG0095|consen 162 LDLACRLIS 170 (213)
T ss_pred HHHHHHHHH
Confidence 998877654
No 59
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=168.54 Aligned_cols=161 Identities=24% Similarity=0.373 Sum_probs=132.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE----EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE----LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.-+|++++|+.|+|||+|++++..+.+.. .+.|+|+.+.. +-.+.+++++|||+||++|+....+|++.+.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 34799999999999999999999888754 67788866533 33367999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||+++.++|+.+.+|+...... ..+++-+++++||.|+.+.. ++...++..+.......+.++|+++|+|++|.|
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R---~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPER---EVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhh---hhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 99999999999999999998654 34778999999999997653 333333334444555679999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
-...+.+..+
T Consensus 164 l~c~~tIl~k 173 (214)
T KOG0086|consen 164 LKCARTILNK 173 (214)
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 60
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.4e-32 Score=185.74 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=122.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+|+|++|||||||++++..+.++. +.+|.+..+. .+.. ..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3799999999999999999999988865 5677765553 2333 4578999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HH--------HHhhcCcCccCCCc-eEEEEeeccc
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AE--------ITDALSLHSIKNHD-WHIQACSALT 162 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~S~~~ 162 (183)
|++++++|+.+..+|....... .++.|+++|+||+|+.+.... .+ +....+....+..+ .+|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999976565544332 357999999999999653210 00 11111112222334 4899999999
Q ss_pred CCC-HHHHHHHHHHhhhcc
Q 030113 163 GDG-LVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~g-i~~~~~~i~~~~~~~ 180 (183)
+.| |+++|+..+....++
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999988865553
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.2e-32 Score=184.12 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++..+.+.. +.++.+..+. ..... ...+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999887755 4455554332 23333 35689999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
++.++|+.+..|+..+..... ..+.|+++|+||+|+..... ..+.. .+. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALA----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHH----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877755432 35789999999999864322 22211 111 2234579999999999999999
Q ss_pred HHHHHhhhccC
Q 030113 171 EWISQRVTGKA 181 (183)
Q Consensus 171 ~~i~~~~~~~~ 181 (183)
+++++.+.++.
T Consensus 156 ~~l~~~l~~~~ 166 (190)
T cd04144 156 YTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3.7e-32 Score=179.15 Aligned_cols=157 Identities=18% Similarity=0.278 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.+..+.. ..++....+ ..... ....+.+|||||++++...+..+++++|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887654 233333222 22223 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888877665444579999999999986532 112221111 11236899999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
++++.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
No 63
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-32 Score=178.34 Aligned_cols=162 Identities=23% Similarity=0.368 Sum_probs=135.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEE----EcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELV----YKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+-+||+++|++++|||-|+.++..++|.. ..+|+|+...... .+.++.++|||+||++++.....|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 456899999999999999999999999865 6688887765433 35689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++...+|+++..|+.++..+.. .++++++|+||+||... +.+..+.+...+...+..++++||.++.|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999998865 58999999999999652 222333333333445567999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+.++..+.+.
T Consensus 168 F~~~l~~I~~~ 178 (222)
T KOG0087|consen 168 FERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 64
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.8e-32 Score=182.63 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=127.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.+|.+..+. .+... ...+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 356999999999999999999999888754 5567665543 33333 367899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+... ..+..... ...+.+++++|+++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999999988876543 5689999999999865422 12222211 1223679999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.+.+
T Consensus 157 ~lf~~l~~~~~~~~ 170 (199)
T cd04110 157 EMFNCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.3e-32 Score=179.23 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=121.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccc-cCccc-ceeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVG-SNVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++..+.+... .++.+ .....+..+ ...+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999998887653 34443 222233333 457889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.+|..+..|+..+.......+.|+++|+||+|+.+..... +....+. ...+.+++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988888765444679999999999985432211 1112221 12235799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998865
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.6e-32 Score=179.14 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=121.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.+||+++|++|+|||||++++.+..+.. ..++.+..+. ..... ...+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877643 3344443222 22233 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++..++..+..|+..+.......+.|+++++||+|+..... ..+..+.. +..+.+++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999888887654456799999999999864321 12221111 1234579999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998875
No 67
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=8.1e-31 Score=171.60 Aligned_cols=156 Identities=33% Similarity=0.601 Sum_probs=130.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
|+++|++|+|||||++++.+.++.. +.++.+.....+......+.+||+||+..+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999987754 567778777777777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.....++..........+.|+++|+||+|+.+.....+..............++++++|++++.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888876555567999999999998766554455445443333345678999999999999999999875
No 68
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=9e-32 Score=177.65 Aligned_cols=157 Identities=24% Similarity=0.379 Sum_probs=124.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. +.++.+..+ ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999887754 445555443 233333 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||++++++|..+..|+..+.... ..+.|+++|+||.|+..... ..+..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888875543 35689999999999854322 22222222 123568999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
|+++++.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 69
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.6e-31 Score=177.41 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|||||||+.++..+.+.. +.++.+..+. .+.. ...++.+|||+|++.+...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 689999999999999999999888754 4555543322 2233 34788999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHh--------hcCcCccCC-CceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITD--------ALSLHSIKN-HDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~--------~~~~~~~~~-~~~~~~~~S~~~ 162 (183)
++++++|..+.. |+..+... ..+.|+++|+||.|+.+... .....+ ..+...... ...++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999875 55544433 25799999999999854321 111100 000011111 234799999999
Q ss_pred CCCHHHHHHHHHHh
Q 030113 163 GDGLVDGLEWISQR 176 (183)
Q Consensus 163 ~~gi~~~~~~i~~~ 176 (183)
|+|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999874
No 70
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.4e-32 Score=184.23 Aligned_cols=158 Identities=22% Similarity=0.309 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... ...+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888755 4567765543 33332 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
||++++++|..+..|+..+..... ..+.|+++|+||.|+.+.. ...+..+ +. ...+++++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~-~~----~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR-FA----QANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCCCHH
Confidence 999999999999888887765432 2357899999999986432 2222221 11 1234579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++++.+...
T Consensus 156 ~lf~~l~~~l~~~ 168 (215)
T cd04109 156 LLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 71
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=8.2e-32 Score=176.01 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc-CcccceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVGSNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+||+++|+.|+|||||+.++..+.+.... ++.+.....+..++ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999888776533 33333334455554 6799999999975 2456889999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.||..+..|+..+.......+.|+++|+||.|+..... .++...++.... ....++|++|||++|.||+++|+.+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999998887665556799999999999843111 111111111111 1234689999999999999999999
Q ss_pred HHhh
Q 030113 174 SQRV 177 (183)
Q Consensus 174 ~~~~ 177 (183)
++.+
T Consensus 155 ~~~~ 158 (158)
T cd04103 155 AQKI 158 (158)
T ss_pred HhhC
Confidence 8653
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.6e-32 Score=182.93 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+|||+|++.+...+..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999988865 4566654443 2223 34789999999999998888899999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh---------hcCcCcc-CCCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD---------ALSLHSI-KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~S~~~ 162 (183)
++++.+|..+.. |+..+... ..+.|+++|+||+|+.......+... ..+.... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66666543 24799999999999965432211100 0011111 12236799999999
Q ss_pred CCCHHHHHHHHHHhhhccC
Q 030113 163 GDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~ 181 (183)
|.|++++|+++++.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999887644
No 73
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=170.34 Aligned_cols=162 Identities=23% Similarity=0.384 Sum_probs=136.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--E---EEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--L---VYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..++++.+||++-+|||||++.+..+.+++ ..||+|+++.. + ....+++++|||+||+++++...+|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 467999999999999999999999999987 56888876532 2 22458999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQH-SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|||+++.+||+.+.+|+.+...+...+. +-+.+|++|+|+... .++..++++..++..+..|+++|+++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999999877666444 555789999999754 3444445555556788899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
|.|..+.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-31 Score=180.39 Aligned_cols=158 Identities=22% Similarity=0.395 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cccCcccceeEE--EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNVEE--LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+. .+.++.+..+.. +..+ ...+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988874 345566554432 3333 47899999999999999899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++.++++++..|+..+.... ..+.|+++|+||+|+.... ...+..... ...+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999998888776543 3468999999999986432 222222221 122457999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+++++.+.+..
T Consensus 155 ~~~l~~~~~~~~ 166 (191)
T cd04112 155 FTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 75
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=8.8e-31 Score=173.56 Aligned_cols=159 Identities=20% Similarity=0.325 Sum_probs=124.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|+|||||++++.++.+.. ..++.+.... .+.. ....+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 456999999999999999999999887755 4566665532 3333 3477899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCC---CCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHED---LQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+|||+++++++..+..|...+..... ..+.|+++|+||+|+... ....+..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888877665332 246899999999998532 233333333221 2234799999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++|+++++.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 76
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=182.38 Aligned_cols=164 Identities=25% Similarity=0.383 Sum_probs=127.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....+||+++|++|+|||||++++.+..+....++.+.... .+..+ ...+.+|||||++++...+..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 345679999999999999999999998887777777776543 33333 46889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhC-CCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLG-HEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
++|||++++++|..+...|...+. .....+.|+++|+||+|+..... ..+..... ...+++++++||+++.|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KEHGCLFLECSAKTREN 164 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999998875554443 22234689999999999864322 22222111 12345799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++.+.+.+.+
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=6.1e-31 Score=172.80 Aligned_cols=156 Identities=23% Similarity=0.310 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.+. .++.+.... .... ....+.+|||+|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998877543 344443322 2222 3568899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|++++.++..+..|+..+... .++.|+++|+||+|+.... ..+.. .+. ...+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999988888777543 2468999999999985321 11111 111 123468999999999999999999
Q ss_pred HHHhhhccC
Q 030113 173 ISQRVTGKA 181 (183)
Q Consensus 173 i~~~~~~~~ 181 (183)
+++.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887763
No 78
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1.9e-31 Score=179.35 Aligned_cols=158 Identities=24% Similarity=0.399 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998865 5677765443 3333 3467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++++|..+..|+..+.... ..+.|+++|+||.|+.+.... .+....+. ...+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888776543 245899999999998643211 11111221 12345799999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++++.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999988764
No 79
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.7e-32 Score=168.67 Aligned_cols=157 Identities=24% Similarity=0.359 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++.+|+|++|+|||+|+-++..+.|.. +..|+|+... .+.. ..+++++||++|++.|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 567899999999999999999998877 4466675543 3333 5689999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++.+||.+...|+.++.+.. +..|-++|+||.|..+... +....+..++...++.+|++|+++++|++.+|..
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~Rrv---V~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRV---VDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCcccee---eehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999997654 4789999999999865321 1222222333445677999999999999999999
Q ss_pred HHHhhhc
Q 030113 173 ISQRVTG 179 (183)
Q Consensus 173 i~~~~~~ 179 (183)
|.+++..
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 9887654
No 80
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.98 E-value=1.5e-31 Score=176.37 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-E--EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-L--VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+.. + ......+.+|||||++++...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999988754 34555433322 2 2245788999999999999988899999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+++++++..+..|+..+.... ...+.|+++|+||+|+.+.... .+...... ....++++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 999999999888876554322 2357999999999998652211 11111111 2234579999999999999999
Q ss_pred HHHHHh
Q 030113 171 EWISQR 176 (183)
Q Consensus 171 ~~i~~~ 176 (183)
++|++.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999753
No 81
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=3.6e-31 Score=174.59 Aligned_cols=156 Identities=24% Similarity=0.405 Sum_probs=123.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+||+||++.+...+..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 34799999999999999999999888653 5566665443 333333 678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++..+..|+..+.... ..+.|+++|+||.|+.... ..++...... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHH
Confidence 999999999999998888776543 2468999999999986432 2222222221 2346799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998875
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=2.3e-31 Score=176.28 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=123.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhH-hhHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLR-TSWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (183)
.++|+++|++|+|||||++++....+.. +.++.+..+. .+... ...+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999887754 4566654432 33333 3789999999999886 568888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeeccc---CCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALT---GDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~---~~gi 166 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+...... .+..+.+. ....++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998888776655567999999999998643321 22222222 22346799999999 8999
Q ss_pred HHHHHHHHHhhh
Q 030113 167 VDGLEWISQRVT 178 (183)
Q Consensus 167 ~~~~~~i~~~~~ 178 (183)
+++|..+++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 83
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=4.1e-31 Score=174.76 Aligned_cols=158 Identities=23% Similarity=0.328 Sum_probs=124.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999887654 3445554432 2333 34689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++..+..|+..+.... .++.|+++|+||.|+.+.. ...+...... ..+.+++++|++++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999999888776543 3679999999999986432 2333322221 2345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|.++.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=1.4e-30 Score=171.73 Aligned_cols=157 Identities=24% Similarity=0.381 Sum_probs=122.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.+||+++|++|+|||||++++..+.+.. ..++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999998877655 33555433 34444444 688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+...... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999999988888876542 35799999999999864421 222222211 12234689999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998764
No 85
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.98 E-value=4e-31 Score=162.39 Aligned_cols=165 Identities=28% Similarity=0.532 Sum_probs=154.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+.+..+.++|-.++|||||++.++.+.+.+ ..|+.|++...++-+.+.+.+||.|||..++..|..|++.+++++||+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 677899999999999999999999887765 7799999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+.+++.+...+..+..++......++|+++.+||.|+........+.+.++........+-+|.+|+++..|++...+|+
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999999888999999999999999988889999999988888888899999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
+++-..
T Consensus 178 i~hsk~ 183 (186)
T KOG0075|consen 178 IEHSKS 183 (186)
T ss_pred HHHhhh
Confidence 987544
No 86
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=3.6e-31 Score=178.77 Aligned_cols=161 Identities=20% Similarity=0.275 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc--ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT--THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+..+ .+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988753 6667765442 33343 36778999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
||++++.+++.+..|+..+... ..+.|+++|+||+|+.+... ...+............+.+++++||+++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999988888777553 24789999999999854321 01110000001112234579999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.++
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 87
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.98 E-value=3.3e-31 Score=174.11 Aligned_cols=154 Identities=26% Similarity=0.417 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999887644 4455554433 2233 3468899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... .++.|+++|+||.|+.... ...+...... ..+++++++|++++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988888765432 3679999999999986432 2222222222 223679999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998764
No 88
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=4.3e-31 Score=180.91 Aligned_cols=160 Identities=25% Similarity=0.389 Sum_probs=128.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+++|++|+|||||++++.+..+.. +.++.+..+. .+..+ .+.+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999888753 5577776543 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.... .+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998888776543 357999999999998643321 22222222 22356899999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
+|+++++.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988755
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=2.6e-31 Score=174.77 Aligned_cols=152 Identities=22% Similarity=0.377 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+||+++|++|+|||||++++.++.+.. ..++.+..+. .+... ..++.+|||||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999887654 4566665543 23332 5789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+... ..+.|+++|+||.|+..+.. .++...... ..+++++++|++++.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHHH
Confidence 99999999999998888777543 25799999999999865322 222222221 2245799999999999999
Q ss_pred HHHHHHHh
Q 030113 169 GLEWISQR 176 (183)
Q Consensus 169 ~~~~i~~~ 176 (183)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
No 90
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=8e-31 Score=176.80 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=122.4
Q ss_pred EcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 23 VGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 23 iG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+|++|||||||+++++.+.+.. +.+|.+..+....+ ..+++.+|||+|++++..++..+++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999887764 56787766654433 358999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.+|..+..|+..+.... .+.|+++|+||+|+.......+..+ .....++++++|||++|.||+++|+++++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888786543 5799999999999854322111111 1123456899999999999999999999988
Q ss_pred hcc
Q 030113 178 TGK 180 (183)
Q Consensus 178 ~~~ 180 (183)
.+.
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 664
No 91
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=2.1e-30 Score=170.33 Aligned_cols=155 Identities=28% Similarity=0.414 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+.++.. +.. ....+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887654 55666654432 233 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++.++..+..|+..+..+....+.|+++|+||+|+.... ...+...... ..+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998888877766666789999999999986332 2333222221 2356799999999999999999
Q ss_pred HHHHhh
Q 030113 172 WISQRV 177 (183)
Q Consensus 172 ~i~~~~ 177 (183)
++.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998764
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=3e-30 Score=169.86 Aligned_cols=155 Identities=25% Similarity=0.431 Sum_probs=124.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+.. ....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998766 566666433 23333 357889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+++++++.....|+..+..... ...|+++++||+|+.... ...+...... ..+.+++++|+++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999998888876543 679999999999986322 2223222221 12357999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
++++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=8.5e-31 Score=172.59 Aligned_cols=157 Identities=26% Similarity=0.469 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+. .+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887644 4455554433 344433 68899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|++++++++.+..|+..+..+.. .+.|+++|+||+|+.... ......+.. ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888887765543 579999999999986532 222222221 1234579999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
No 94
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=6.4e-31 Score=176.75 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988754 4455554432 2222 2468999999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCC------CHHHHHhhcCcCccCCCce-EEEEeecccCC
Q 030113 93 DSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAM------TPAEITDALSLHSIKNHDW-HIQACSALTGD 164 (183)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 164 (183)
|++++++|+.+.. |+..+... ..+.|+++|+||.|+.... ...+..+.. ...+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA-----KKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH-----HHcCCcEEEEccCCCCC
Confidence 9999999998875 55444332 2578999999999986432 122221111 11223 79999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+.+++.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887764
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.2e-30 Score=176.24 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhH--------hhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLR--------TSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 84 (183)
+||+|+|++|||||||++++.++.+.. +.++.+... ..+..++ ..+.+|||||..++. .....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988765 455555332 2334444 678899999965431 113345789
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|||+++++||+.+..|+..+.... ...+.|+++|+||+|+.... ...+..+... +..++++++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988888876653 24679999999999995532 1222211111 123568999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++++|+.+++.+..+.+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCC
Confidence 9999999999999988776544
No 96
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=7.5e-30 Score=177.24 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc-ceeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG-SNVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||+++++++.+.. +.+|.+ .....+..+ .+.+.+|||+|++.+...+..++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888764 445554 223334443 4788999999999998888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCC--------CCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 94 STDRARISIMKDELFRLLGHE--------DLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+++.++|+.+..|+..+.... ...+.|+++|+||+|+.. .....++.+.... ...++++++||+++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999988888876431 235799999999999864 3344444444331 12457999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++|+++++.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999855
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=4.8e-30 Score=168.56 Aligned_cols=154 Identities=21% Similarity=0.371 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999887654 345555433 3343433 67999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+..... .+.|+++++||+|+.+.. ...+..... +..+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765432 369999999999984322 222222221 1234679999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998754
No 98
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=4.5e-31 Score=173.62 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++++|||||++++.++.+.. +.++.+..... +.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988765 45666555443 333 45789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++++||..+..|+..+..... .+.|+++++||.|+.+ ....++..+.. ...+.+|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888766543 5699999999999875 33333332222 12236899999999999999999
Q ss_pred HHHHhhh
Q 030113 172 WISQRVT 178 (183)
Q Consensus 172 ~i~~~~~ 178 (183)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.7e-30 Score=171.25 Aligned_cols=154 Identities=20% Similarity=0.277 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--Cccc-ccCcccceeE--EEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--EVVT-THPTVGSNVE--ELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~~~~-~~~~~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+||+++|++|+|||||++++..+ .+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4443 4566665442 2222 3489999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887776543 5689999999999865432211 111221 12245799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.2e-29 Score=168.34 Aligned_cols=160 Identities=20% Similarity=0.326 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+... ...+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887644 334555433 233343 467789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCC---CCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 93 DSTDRARISIMKDELFRLLGHED---LQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
|+++++++.....|...+..... ..+.|+++|+||+|+.. .....+...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999998888777666544322 34799999999999973 223333333322 1223579999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++++++.+.+.++.
T Consensus 157 ~l~~~i~~~~~~~~ 170 (172)
T cd01862 157 QAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 101
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=9.8e-30 Score=168.19 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=121.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--cccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
++.+||+++|++|||||||++++.++.+. .+.+|.+..+ ..+..++ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56799999999999999999999998875 3557766543 2344433 6789999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----PAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
++|+|++++.++..+..|+..+... .+.|+++|+||.|+.+... ..++.+.++ ...++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG-------LPPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcC-------CCCCEEEEeccC
Confidence 9999999999998887777755322 3699999999999854321 122222111 113689999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030113 164 DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~ 179 (183)
.|++++|+.+++.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999998875
No 102
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-31 Score=161.77 Aligned_cols=180 Identities=46% Similarity=0.826 Sum_probs=163.6
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
|+..++..++.+.. .++.+++++|-.|+||||++.++.-++...+.|+++++...+.++..++++||.+|+...+..|.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 55556665555554 49999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.|+.+.|++|||+|.+|.+........+..+++....++..++++.||.|........|+...++....+...+.++++|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888899998888888899999999999988778888888888877777889999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|.+|+|+++..+|+.+.+..+
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999998765
No 103
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.2e-30 Score=172.62 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
++||+++|++|+|||||++++.++.+.. +.++.+..+ ..+.. ....+.+|||||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4789999999999999999999888754 445555333 22333 3478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++.....|...+.......+.|+++++||.|+.+... ..+... +.. .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQ---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHH---HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999988888776544446799999999999864322 122111 111 1123679999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
+++++++.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 104
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=176.41 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=125.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+|+|++|+|||||++++.+..+.. +.++.+..+. .+.. ..+.+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887654 4566665543 2333 3467899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||+++++++..+..|+..+.... ..+.|+++|+||.|+.... ...+..+.. +..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999988887765443 2579999999999986532 222222222 2234679999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++++.+.++
T Consensus 158 e~f~~l~~~~~~~ 170 (210)
T PLN03108 158 EAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5e-30 Score=169.29 Aligned_cols=161 Identities=16% Similarity=0.200 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce-eEE--EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN-VEE--LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+||+++|++|+|||||++++.++.++...++.... ... +.....++.+|||||+..+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998876544332211 111 222567899999999998888888888999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC-ceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH-DWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.++..+..+|...+.... .+.|+++|+||+|+.+........+.......... ..+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999988655544443322 47999999999999764432111111100000011 1369999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 987765
No 106
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.7e-30 Score=172.73 Aligned_cols=158 Identities=21% Similarity=0.272 Sum_probs=115.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
|+|+|++|+|||||++++.++.+.. +.++....+. .+.. ....+.+|||||++.+...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5799999999999999999988755 3344433322 2223 3467999999999999999999999999999999999
Q ss_pred CcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-H--------HHhhcCcCccCCCc-eEEEEeecccCC
Q 030113 96 DRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-E--------ITDALSLHSIKNHD-WHIQACSALTGD 164 (183)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~--------~~~~~~~~~~~~~~-~~~~~~S~~~~~ 164 (183)
++++|+.+.. |+..+... .++.|+++|+||+|+....... . +............+ .+++++||+++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999875 55555443 2579999999999986532110 0 00000001111223 379999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 107
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-31 Score=166.18 Aligned_cols=180 Identities=40% Similarity=0.656 Sum_probs=159.8
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCC--------cccccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE--------VVTTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
|=.++++++++.+.+..+.++|+|..++|||||+.+.-... ...-.+|+|.+..++......+.+||.+||+
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 45688999999999999999999999999999998773321 1234588999999999999999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc-CccCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL-HSIKNH 151 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 151 (183)
..+++|..|+..+|++|+++|+++++.|......+..+..+....+.|+++..||.|+.+.....++...++. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988888889999999999999988888887777762 333457
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..++.++||.+|+||++..+|++..+.++
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 88899999999999999999999999887
No 108
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-30 Score=175.40 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=111.0
Q ss_pred ceEEEEEcCCCCCHHHHHH-HhccCCc------ccccCcccc-e-eE-----------EEEEcCeEEEEEEcCCChhhHh
Q 030113 17 DYKIIIVGLDNAGKTTTLY-KLHLGEV------VTTHPTVGS-N-VE-----------ELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~-~l~~~~~------~~~~~~~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.+||+++|+.|+|||||+. ++.++.+ ..+.||++. . +. .+....+.+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 6655433 224466642 1 11 12224589999999999752
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMT----------------PAEI 139 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----------------~~~~ 139 (183)
....+++++|++++|||++++.||..+.. |+..+.... .+.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 44568899999999999999999999975 666554332 4689999999999854200 0111
Q ss_pred HhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 140 TDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
....+...++..+++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222222333455689999999999999999999864
No 109
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2.5e-30 Score=171.97 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++..+.+.. +.++....+ ..+..+ ...+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888754 344443222 223333 3568899999999998889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhcCcCccC-CCceEEEEeecccC
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-I--------TDALSLHSIK-NHDWHIQACSALTG 163 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~S~~~~ 163 (183)
++++.+|..+...|...+... ..+.|+++|+||+|+.+...... + ....+....+ ....++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875444443332 46799999999999854321111 0 0000001111 12236999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 110
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.2e-29 Score=165.81 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++....+.. ..++.+..+. .... ....+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887654 3333332222 2222 34789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+.+++++|++++.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998888887655567999999999998652 22222222111 1235799999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
No 111
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.2e-29 Score=170.52 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=122.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc-cCccc-ceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVG-SNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++.+..+... .++.. .....+.+.+ +.+.+||+||+..+...+..++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998877653 33332 3333444444 7889999999999988888999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++..+..|+..+.......+.|+++|+||+|+.+.............. ....+.+++++||++|.|++++|++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999998888888776555679999999999986531111111111111 012235699999999999999999999
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 98764
No 112
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.2e-30 Score=171.26 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+|++++|++|+|||||++++.++.+.....+..... ..+..+ ...+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999998877765333222222 223333 4688999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---------HHHHhhcCcCccCC-CceEEEEeeccc
Q 030113 94 STDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---------AEITDALSLHSIKN-HDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~S~~~ 162 (183)
++++.+|..+. .|+..+... ..+.|+++++||.|+...... ..+........... ...+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999886 455555432 246999999999998643210 00011001111111 223799999999
Q ss_pred CCCHHHHHHHHH
Q 030113 163 GDGLVDGLEWIS 174 (183)
Q Consensus 163 ~~gi~~~~~~i~ 174 (183)
|.|++++|+.++
T Consensus 159 ~~~v~~lf~~~~ 170 (173)
T cd04130 159 QKNLKEVFDTAI 170 (173)
T ss_pred CCCHHHHHHHHH
Confidence 999999998875
No 113
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=9.8e-30 Score=174.61 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cccCccc--ceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhcc-CCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVG--SNVEELVY--KNIRFEAWDVGGQERLRTSWATYYR-GTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (183)
+||+++|++|+|||||++++..+.+. .+.++.+ .....+.. ....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877764 3444443 23333443 457899999999982 23344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.+|.....|+..+.......+.|+++|+||+|+.+... ..+. ..+. ...+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999999988888776654446799999999999865422 1111 1111 22345799999999999999
Q ss_pred HHHHHHHhhh
Q 030113 169 GLEWISQRVT 178 (183)
Q Consensus 169 ~~~~i~~~~~ 178 (183)
+|+++++.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 114
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=2.4e-29 Score=165.25 Aligned_cols=154 Identities=23% Similarity=0.340 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++|+|||||++++.+..+.. ..++.+.. ...+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887754 22333322 222333 3457899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++.....|+..+..... .+.|+++++||+|+..... ..+..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999998888777765443 3799999999999864322 222222221 234569999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
No 115
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=6.7e-30 Score=168.54 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChh-hHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQER-LRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||+++++.+.+.. +.++....+ ..+.. ..+.+.+||+||+.. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999998877643 334432222 22233 346789999999885 34456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCC-CHHHH
Q 030113 94 STDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGD-GLVDG 169 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-gi~~~ 169 (183)
++++.+|..+..|+..+..... ..+.|+++|+||+|+.... ...+.... . ...+.+++++|++++. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-A----SELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-H----HHcCCEEEEeCCCCCchhHHHH
Confidence 9999999998888776655432 3579999999999985432 22221111 1 1223579999999994 99999
Q ss_pred HHHHHHhhh
Q 030113 170 LEWISQRVT 178 (183)
Q Consensus 170 ~~~i~~~~~ 178 (183)
|+++++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 116
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.5e-28 Score=160.81 Aligned_cols=152 Identities=26% Similarity=0.453 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-cCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+||+++|++++|||||++++.+..+... .++.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887664 5666665554333 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC--CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK--DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+++++++..+..|+..+.... ....|+++++||+|+. ......+..+... ....+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999888887776653 2569999999999985 3333344433332 245679999999999999999
Q ss_pred HHHHH
Q 030113 171 EWISQ 175 (183)
Q Consensus 171 ~~i~~ 175 (183)
+++.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
No 117
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.3e-28 Score=163.87 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|||||||++++.++.+.. +.++.+..+ ..+.. ....+.+|||+|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999988765 445555433 23333 34678999999999998888888999999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh---------cCcCcc-CCCceEEEEeeccc
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA---------LSLHSI-KNHDWHIQACSALT 162 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~S~~~ 162 (183)
+++.++|..+.. |...+... ..+.|+++|+||.|+.+.....+.... .+.... .....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988865 44444332 247899999999998643221110000 000000 11234799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|++++|+++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 118
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.7e-28 Score=162.44 Aligned_cols=158 Identities=23% Similarity=0.353 Sum_probs=120.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++..+.+.. ..++.+.. ...+...+ ..+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999998766543 44555433 23344444 67899999999999999899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.... .+....+. .....+++++|+++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999999998888877665433 2346999999999998643321 22222222 11235799999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+|+++.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999999865
No 119
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=2.8e-28 Score=162.94 Aligned_cols=159 Identities=20% Similarity=0.276 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccc-eeEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGS-NVEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+++|++|+|||||++++.+..+.. ..++.+. ....+... ...+.+||+||++++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887654 3344432 23334443 3567999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+++..+++.+..++..+.......+.|+++|+||+|+.... ...+..... ...+.+++++|++++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876655678999999999986432 222221111 11235799999999999999999
Q ss_pred HHHHhhhccC
Q 030113 172 WISQRVTGKA 181 (183)
Q Consensus 172 ~i~~~~~~~~ 181 (183)
++.+.+.+.+
T Consensus 157 ~l~~~~~~~~ 166 (180)
T cd04137 157 LLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 120
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.8e-31 Score=163.33 Aligned_cols=160 Identities=25% Similarity=0.388 Sum_probs=129.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEc-----------CeEEEEEEcCCChhhHhhHHhhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYK-----------NIRFEAWDVGGQERLRTSWATYY 82 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~-----------~~~~~~~D~~g~~~~~~~~~~~~ 82 (183)
-+|.+.+|++|+||||++.++..+.|.. -.+|+|+.+.. +.++ .+.+++|||+||++++++.-.++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 3678899999999999999999888754 55677766543 3331 37899999999999999999999
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++-++++++|+++..||-++++|+..+..+..-.+..+++++||+|+.+... +.+..........+.|||++||-+
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeecccc
Confidence 99999999999999999999999999998877777888999999999865432 222222222234567899999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|+++..+.+...+.+
T Consensus 166 g~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 166 GTNVEKAVELLLDLVMK 182 (219)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999988887776544
No 121
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.9e-29 Score=164.88 Aligned_cols=157 Identities=24% Similarity=0.304 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEE--EcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELV--YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
+||+++|++|+|||||++++.+..+.. +.++..... ..+. .....+++||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999888733 333332211 1122 235789999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhcCcCcc-CCCceEEEEeecccCC
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE--------ITDALSLHSI-KNHDWHIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~S~~~~~ 164 (183)
++++.++......|...+.... .+.|+++|+||+|+.+...... +......... .....+++++|+++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999998877665444433322 4799999999999865543211 0011111111 1223379999999999
Q ss_pred CHHHHHHHHHH
Q 030113 165 GLVDGLEWISQ 175 (183)
Q Consensus 165 gi~~~~~~i~~ 175 (183)
|++++++++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=7.9e-28 Score=164.96 Aligned_cols=163 Identities=24% Similarity=0.366 Sum_probs=129.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
......+||+++|++|||||||++++..+.+. .+.++.+..+..... +.+.+.+||++|++++...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34567799999999999999999887766654 466777776655433 4589999999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..+.. ...+..++++|++++.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988888776442 468999999999986432222222211 123457999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
++.|.++++.+..++
T Consensus 157 ~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 157 EKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999887764
No 123
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.2e-28 Score=161.62 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=119.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|++|+|||||++++.+..+.. ..++.+.. ...+... ...+++||+||+..+...+..+++++|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999998876544 33333322 2223333 47889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++++.....++..+.........|+++|+||+|+.... ...+...... ..+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776544679999999999987532 2222222221 12257999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98764
No 124
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.2e-29 Score=155.53 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=126.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|++++|..-+|||||+-+++.+.|.. ..+|.. +....++. ...++.+|||+||++|..+-+.|+++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 456999999999999999999999888753 223322 22223333 5678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++|..||..+.+|..++..-.. ..+-+++|+||+|+.++... ....+...+..-++.++++||+++.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999876543 34788999999998654221 111122222334566999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
|+.+.+.+.+..
T Consensus 167 Fe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 167 FESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHh
Confidence 999998887643
No 125
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=4.9e-27 Score=157.75 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.||+|+|++|+|||||++++..+.+.. ..++....+. .+... ...+.+||++|++.+......++..+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999998766644 3344433322 22232 4678999999998887777777899999999999
Q ss_pred CCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-------HHHhhcCcCccCCC-ceEEEEeecccCC
Q 030113 94 STDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-------EITDALSLHSIKNH-DWHIQACSALTGD 164 (183)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~S~~~~~ 164 (183)
+++.++|..+.. |+..+.... ++.|+++|+||+|+.+..... .+.........+.. ..++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999875 555554332 469999999999985321100 00000000111112 2479999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++|+++.+.+....+
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999987766544
No 126
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.7e-30 Score=155.94 Aligned_cols=155 Identities=21% Similarity=0.309 Sum_probs=123.7
Q ss_pred EEcCCCCCHHHHHHHhccCCccc--ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVT--THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
++|++++|||+|+-++-.+.|.. ..+|+|+.+..... ..+++++|||+||+++++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887776643 34677766654322 4589999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..||++.+.|+.++-++. ...+.+.+++||+|+..+.. +....+....+..++|+.++|+++|.|++..|-.|.+
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~---v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERA---VKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhc---cccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 9999999999999986543 24578899999999965421 1122222223344668999999999999999999999
Q ss_pred hhhcc
Q 030113 176 RVTGK 180 (183)
Q Consensus 176 ~~~~~ 180 (183)
.+.+.
T Consensus 158 ~l~k~ 162 (192)
T KOG0083|consen 158 ELKKL 162 (192)
T ss_pred HHHHh
Confidence 88764
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=3.9e-27 Score=155.76 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhH---------hhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLR---------TSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~~ 85 (183)
.+|+++|++|+|||||++++.+..+.. ...+.......+..+..++.+|||||+.... .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 378999999999999999999887632 1234445555555677899999999974210 1111112236
Q ss_pred CEEEEEEeCCCcccH--HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARI--SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.....+..+ + ......+++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE-E----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH-h----hhhccCceEEEEeccc
Confidence 899999999987653 44455555554322 4699999999999865433222111 1 1234567999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=1.1e-26 Score=153.85 Aligned_cols=156 Identities=23% Similarity=0.185 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCe-EEEEEEcCCChh----h---HhhHHhhccCCCE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNI-RFEAWDVGGQER----L---RTSWATYYRGTHA 87 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~d~ 87 (183)
+|+++|++|+|||||++++.+..... ...+.......+...+. ++.+|||||... . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 58999999999999999998765311 12233333444555555 999999999632 1 1222233456999
Q ss_pred EEEEEeCCCc-ccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDR-ARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++ +++..+..|...+..... ..+.|+++|+||+|+.+.....+..+.... .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 788887777666654321 246899999999998654433332222211 11245699999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 129
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.95 E-value=4.7e-27 Score=143.70 Aligned_cols=165 Identities=41% Similarity=0.717 Sum_probs=150.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcC-eEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN-IRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
+.+.++|+++|-.++|||||+..+.+.+.....+|.|++...+.+.+ .++.+||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 47889999999999999999999999888889999999999999966 99999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|.+|...|+++...+.+++.......+|+.+..||-|+.......+....+........-+++-+||+..++|+..-.+|
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999998887788999999999998877777777777776666667889999999999999999999
Q ss_pred HHHhhh
Q 030113 173 ISQRVT 178 (183)
Q Consensus 173 i~~~~~ 178 (183)
+.+...
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 987654
No 130
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-27 Score=144.46 Aligned_cols=162 Identities=23% Similarity=0.356 Sum_probs=128.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce----eEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN----VEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..-+|..|+|+-|+|||+|++.+....|.. -..++|+. +..++...+++++|||+|+++++....+|++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 345889999999999999999998877654 33455543 3445556799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.|||++....+..+..|+....+. ..++..+++++||.|+..... +..+.+..+....+.-+.++|+++|.|+++.
T Consensus 89 mvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrd---v~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhccc---CcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999999988654 457888999999999854322 2222223333455667999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|-...+++..+
T Consensus 165 fle~akkiyqn 175 (215)
T KOG0097|consen 165 FLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHh
Confidence 98877776654
No 131
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.4e-26 Score=156.07 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE-------cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY-------KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
+||+++|+.++|||||++++.++.+.. +.+|++.... .+.+ ..+.+++|||+|++++...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988755 5567774432 2333 34689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCC------------------CCCCCeEEEEEeCCCCCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHE------------------DLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~vilv~nK~Dl~~~ 133 (183)
+|+|||++++.||+++..|+..+.... ...+.|+++|+||.|+.++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999988886531 1246899999999998654
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=2.3e-26 Score=151.44 Aligned_cols=151 Identities=24% Similarity=0.186 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC---ccc---ccCcccceeEEEEEc-CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE---VVT---THPTVGSNVEELVYK-NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~---~~~---~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.|+++|++|+|||||++++.+.. +.. ...+.+..+..+... ...+.+|||||++++......++.++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999998643 221 123444444445554 77999999999999887777888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+++... ......+.. +... ...|+++++||+|+.+.... .++.+.+... .....+++++|+++++|++
T Consensus 82 ~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 82 VAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence 99987311 111111111 1111 12489999999998654211 1222222211 1135689999999999999
Q ss_pred HHHHHHHH
Q 030113 168 DGLEWISQ 175 (183)
Q Consensus 168 ~~~~~i~~ 175 (183)
++++++.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 133
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=8.1e-27 Score=156.23 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=131.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.+||+++|.+|+|||+|..++.+..|.. +.+|++..+. .+.. ....+.++||+|++++......++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999876 5677764433 3333 457889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|++++..||+.+..++..+.........|+++|+||.|+.... .+....+........++|+++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R---~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER---QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc---ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 9999999999999999999666666678999999999997631 1122222222344566799999999999999999
Q ss_pred HHHHhhhc
Q 030113 172 WISQRVTG 179 (183)
Q Consensus 172 ~i~~~~~~ 179 (183)
.++..+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.3e-26 Score=153.60 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC-------cc-cccC------ccccee----EEE-----EEcCeEEEEEEcCCChhhH
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE-------VV-TTHP------TVGSNV----EEL-----VYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~-------~~-~~~~------~~~~~~----~~~-----~~~~~~~~~~D~~g~~~~~ 75 (183)
+|+++|++++|||||++++++.. +. .+.+ +.+... ... ......+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 11 0111 112221 112 2246788999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..+..+++.+|++++|+|++++.++.....+.... . .++|+++|+||+|+.+.. ..+..+.+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 99999999999999999999876655554443322 1 358999999999986432 222222221111 1122358
Q ss_pred EEeecccCCCHHHHHHHHHHhhh
Q 030113 156 QACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+++||++|.|++++++++.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999999999999998763
No 135
>PRK15494 era GTPase Era; Provisional
Probab=99.95 E-value=7.9e-26 Score=163.79 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=112.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh--------HhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL--------RTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 81 (183)
+.+..+|+++|++|+|||||+|++.+..+...+ +|.......+..++.++.+|||||.... .......
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 356789999999999999999999988765333 3333344556677889999999997431 1112234
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+.++|++++|+|.++. +.....++...+.. .+.|.++|+||+|+.+. ...+..+.+.. ......++++||+
T Consensus 129 l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEecc
Confidence 7899999999998653 44444444433332 24677899999998643 23333333321 1223579999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+|.|++++++++.+.+.+.++
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCC
Confidence 999999999999999988765
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=6.6e-26 Score=154.34 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=108.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-eEEEEEEcCCChh---------hHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-IRFEAWDVGGQER---------LRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~~ 81 (183)
...++|+|+|++|||||||++++.+..... ..++.......+...+ ..+.+|||||... +... ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 456899999999999999999999876422 2344444444555544 3899999999732 2222 223
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+..+|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 67899999999999988776655444433 22233468999999999986543221 11 12234579999999
Q ss_pred cCCCHHHHHHHHHHhh
Q 030113 162 TGDGLVDGLEWISQRV 177 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~ 177 (183)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 137
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=1.2e-25 Score=158.80 Aligned_cols=155 Identities=21% Similarity=0.165 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccc---ee-EEEEEcCeEEEEEEcCCChhh--------HhhHHhhccCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS---NV-EELVYKNIRFEAWDVGGQERL--------RTSWATYYRGTH 86 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d 86 (183)
+|+++|.+|+|||||+|++.+......++..++ .. ........++.+|||||.... ......++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 689999999999999999999876443322222 22 222335678999999996432 122345678999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+.. .....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence 999999999876654 222222222 36899999999998643221111111111 111226999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++++++.+.+.+.++
T Consensus 153 ~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 153 SFLAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 9999999999987765
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=2.4e-25 Score=147.15 Aligned_cols=154 Identities=24% Similarity=0.196 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.|+++|++|+|||||++++....+... ..+.......+... +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998776543 22333333334443 678999999999998888888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC---cCc--cCCCceEEEEeecccCCCHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS---LHS--IKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~S~~~~~gi~ 167 (183)
|+++....... ..+..+.. .++|+++|+||+|+.... ...+...+. ... .....++++++|++++.|++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99875322111 11111111 458999999999986432 222222221 110 11235689999999999999
Q ss_pred HHHHHHHHhhh
Q 030113 168 DGLEWISQRVT 178 (183)
Q Consensus 168 ~~~~~i~~~~~ 178 (183)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.3e-25 Score=161.65 Aligned_cols=161 Identities=19% Similarity=0.142 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEE-cCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVY-KNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||++++.+.... ...+|...+...+.+ +..++.+||+||..+ +...+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 67899999999999999999875421 123455555666666 457899999999532 3345556678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|+++.++++.+..|...+..+.. ..++|+++|+||+|+.+..... +..+... ...+.+++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCC
Confidence 99999999988788888777777655422 2468999999999986543221 1111111 1223579999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++++++.+.+.+.++
T Consensus 315 GI~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 315 GLDELLRALWELLEEARR 332 (335)
T ss_pred CHHHHHHHHHHHHHhhhc
Confidence 999999999998876543
No 140
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=4.4e-25 Score=148.50 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccccc-------------------CcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTH-------------------PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
+|+|+|.+|+|||||++++.+....... .+.......+......+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654322 222333444555678999999999999988899
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhcCcCcc-------
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA----EITDALSLHSI------- 148 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~----~~~~~~~~~~~------- 148 (183)
.+++.+|++++|+|++++.+... ...+..... .+.|+++++||+|+..+.... .+.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654322 222222222 468999999999997643322 22233322111
Q ss_pred --CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 149 --KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 149 --~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.....+++++|++++.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 124678999999999999999999999875
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=6.1e-26 Score=154.20 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=103.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCC-----------ChhhHhhHHhhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGG-----------QERLRTSWATYYR 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~ 83 (183)
...++|+++|++|+|||||++++.+..+.. ....+++..........+.+||||| ++.+...+..++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRV-GKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999876532 2222333222222222689999999 4666666656554
Q ss_pred ----CCCEEEEEEeCCCcccHH-H--------HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcC-c
Q 030113 84 ----GTHAVIVVIDSTDRARIS-I--------MKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLH-S 147 (183)
Q Consensus 84 ----~~d~ii~v~d~~~~~s~~-~--------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~-~ 147 (183)
.++++++|+|.+....+. . ....+...+.. .++|+++|+||+|+.+.. ...++.+.++.. .
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 457888999986532210 0 01111222221 468999999999986443 122233333221 0
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
......+++++||++| |+++++++|.+.+.+...
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 0011236899999999 999999999998877654
No 142
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=5.4e-26 Score=149.25 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee---EEEE-EcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV---EELV-YKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+|+.|+|+.++|||+|+..+..+.|+. +.||+--++ ..+. .+.+.+.+|||+||+++.++++..+.++|.++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999999888877 445554332 2231 34588999999999999999988999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHh--------hcCcCccC-CCceEEEEee
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITD--------ALSLHSIK-NHDWHIQACS 159 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~S 159 (183)
+||++.++.||.++...|...+.+.. ++.|+++|++|.||.++.... ++.. ..+...++ .....|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999998876666655544 789999999999998432111 1110 00001111 1236799999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|++..|++++|+..+......
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcc
Confidence 999999999999888876553
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.1e-25 Score=143.55 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCCh-----hhHhhHHhhccCCCEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE-----RLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 93 (183)
||+++|++|+|||||++++.+..+. ..++.+.. +.. .+|||||+. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999987653 23333322 222 689999973 233333 35789999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
++++.++... . +.... ..|+++|+||+|+.+.. ..++..+.... ....+++++||+++.|++++|++
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 9999876442 2 22221 24899999999986432 22222222211 11236999999999999999998
Q ss_pred HH
Q 030113 173 IS 174 (183)
Q Consensus 173 i~ 174 (183)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 75
No 144
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.3e-24 Score=164.19 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=110.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCCh----------hhHhh-HHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQE----------RLRTS-WAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~~ 80 (183)
..++|+++|.+|+|||||++++++....... .|.......+.+++..+.+|||||.. .+... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4589999999999999999999988753322 22223334456678889999999952 22222 134
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++.+|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+........+............+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999987776653 3333322 46899999999999753322222222222222223467999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|.|++++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=9.9e-25 Score=142.55 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+||+++|++|+|||||++++.+..+.. ..++.+..... +..++ ..+.+||+||+..+...+..++++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999887533 33444444433 45556 7899999999999999888889999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDR-ARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|.... .++.... .+...+..... .+.|+++++||.|+............+.. ....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999876 5555544 44444433332 27899999999999654323333333322 23446999999999999999
Q ss_pred HHHHH
Q 030113 170 LEWIS 174 (183)
Q Consensus 170 ~~~i~ 174 (183)
+++|-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99863
No 146
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=6e-25 Score=148.22 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC----Ccc------cccCcccceeEEEEEc--------------CeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG----EVV------TTHPTVGSNVEELVYK--------------NIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~----~~~------~~~~~~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (183)
++|+++|++++|||||++++++. .+. ....|.+.....+.+. ...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999863 111 1123444444333333 67999999999987
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH----HHhhcCcCc--
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE----ITDALSLHS-- 147 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~----~~~~~~~~~-- 147 (183)
+..........+|++++|+|+++.........+.. ... .+.|+++++||+|+........ +.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 66655566678899999999987543332222211 111 2479999999999864332222 222111111
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
....+++++++||++++|++++++++.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11245689999999999999999999998763
No 147
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=2e-24 Score=141.05 Aligned_cols=143 Identities=22% Similarity=0.152 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 85 (183)
++|+++|++|+|||||++++.+....... .+.......+...+.++.+|||||...... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999987643222 222233344556778999999999654322 233456789
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776655443322 256899999999998754332 1123456799999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=2e-24 Score=156.71 Aligned_cols=151 Identities=25% Similarity=0.217 Sum_probs=108.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEE-cCeEEEEEEcCCC---------hhhHhhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVY-KNIRFEAWDVGGQ---------ERLRTSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 82 (183)
..++|+++|.+|+|||||+|++.+.... ...+|.+.....+.. ++..+.+|||+|. +.+... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 4599999999999999999999987642 234566666666777 5689999999997 223222 2347
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.++|++++|+|++++.+......+. ..+......+.|+++|+||+|+.+.. ++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEccC
Confidence 8899999999999987766554332 22222223468999999999986432 2221111 113589999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
|.|+++++++|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987653
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=4.6e-25 Score=146.82 Aligned_cols=152 Identities=22% Similarity=0.189 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEc-CeEEEEEEcCCChhh-------HhhHHhhccCCCEEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYK-NIRFEAWDVGGQERL-------RTSWATYYRGTHAVIV 90 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ii~ 90 (183)
++|++|+|||||++++.+... .. ..+|.......+..+ +..+.+|||||.... ...+...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 11 223444555556667 889999999996321 1123445788999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHhCCCC------CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEe
Q 030113 91 VIDSTDR------ARISIMKDELFRLLGHED------LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
|+|+++. .++.....+...+..... ..+.|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 466666666666554322 1469999999999986543322221 111112334569999
Q ss_pred ecccCCCHHHHHHHHHHh
Q 030113 159 SALTGDGLVDGLEWISQR 176 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~ 176 (183)
|++++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.93 E-value=1.6e-24 Score=147.00 Aligned_cols=157 Identities=24% Similarity=0.355 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC-CEEEEEEe
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT-HAVIVVID 93 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (183)
+|+++|++++|||||++++....+..+.++...+...+.. ....+.+||+||+.++...+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876655554444444333 367899999999999999999999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc-------------------------
Q 030113 94 STDR-ARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDALSL------------------------- 145 (183)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------------------------- 145 (183)
+++. .++.....++..++... ...+.|+++++||.|+........+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 66777777776654322 1257999999999998654332111111100
Q ss_pred ----------CccCCCceEEEEeecccCC-CHHHHHHHHHH
Q 030113 146 ----------HSIKNHDWHIQACSALTGD-GLVDGLEWISQ 175 (183)
Q Consensus 146 ----------~~~~~~~~~~~~~S~~~~~-gi~~~~~~i~~ 175 (183)
.......+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0000146678999998876 69999999865
No 151
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=9.3e-25 Score=141.64 Aligned_cols=151 Identities=28% Similarity=0.411 Sum_probs=113.8
Q ss_pred EEcCCCCCHHHHHHHhccCCc-cc-ccCcccceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 22 IVGLDNAGKTTTLYKLHLGEV-VT-THPTVGSNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 33 23333 444444443 688999999999988888888899999999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
++.++.....++..........+.|+++++||.|+.......... ...........+++++|+.++.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 998888887774444444455789999999999987654433321 011111234568999999999999999999863
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=3.2e-24 Score=162.01 Aligned_cols=152 Identities=24% Similarity=0.256 Sum_probs=107.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc----eeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS----NVEELVYKNIRFEAWDVGGQER--------LRTSWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (183)
...+|+|+|.+|+|||||++++.+........+.++ ......+.+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347999999999999999999998765443334443 3344555778899999999652 4445667789
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +..+.... ..+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCCC
Confidence 9999999999998765432 222222222 4689999999999864321 11111111 111 2479999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030113 164 DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~ 179 (183)
.|++++++++++.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999998865
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=2.5e-24 Score=145.41 Aligned_cols=147 Identities=19% Similarity=0.198 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc--CCccccc-----------------CcccceeEEEEEcCeEEEEEEcCCChhhHhhH
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL--GEVVTTH-----------------PTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (183)
.+|+++|++++|||||++++.+ +.+.... .+.......+..+...+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 3332211 11222334456678999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcC--ccCCCce
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLH--SIKNHDW 153 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~--~~~~~~~ 153 (183)
..+++.+|++++|+|+++.. +.....++..... .++|+++|+||+|+....... ++.+.+... .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2223333333322 358999999999986533221 222222110 1122366
Q ss_pred EEEEeecccCCCHHHH
Q 030113 154 HIQACSALTGDGLVDG 169 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~ 169 (183)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999776443
No 154
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=2.7e-24 Score=154.81 Aligned_cols=156 Identities=23% Similarity=0.211 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.+|+|||||++++.+.... . ..+|...+...+.+.+ ..+.+||+||... +...+..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 67999999999999999999876421 1 2344555555566655 8999999999632 3334455567899
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++. .+++.+..|...+..+. ...++|+++|+||+|+.+.....+..+.+.. ..+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccC
Confidence 99999999976 56666666655554332 1246899999999998654333333333321 1235799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
++|++++++++.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 155
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=152.84 Aligned_cols=122 Identities=21% Similarity=0.379 Sum_probs=101.1
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEE---------------cCeEEEEEEcCCChh
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVY---------------KNIRFEAWDVGGQER 73 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~---------------~~~~~~~~D~~g~~~ 73 (183)
..+...+||+++|+.|||||||++++.++.+.. +.+|++..+ ..+.+ ..+.+++|||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 345577999999999999999999999887754 557777654 33333 236799999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCC-----------CCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED-----------LQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~vilv~nK~Dl~~~ 133 (183)
+..++..++++++++|+|||+++..++..+..|+..+..... ..++|++||+||+|+...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999988875421 125899999999999653
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=2.8e-24 Score=160.84 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=109.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh--------HHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS--------WATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (183)
+..++|+++|++|+|||||+|++.+..... ...|.......+..++..+.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 355899999999999999999999876422 223444445556678889999999997653321 23467
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|++++|+|++++.++..... +.. ..+.|+++|+||+|+.+..... .....+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877664432 222 2468999999999996532211 12234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|++++++++.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998754
No 157
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=3.6e-25 Score=141.94 Aligned_cols=141 Identities=23% Similarity=0.241 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChh------hHhhHHhhc--cCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQER------LRTSWATYY--RGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d 86 (183)
++|+++|.||+|||||+|++.+....- ...|.......+.+.+..+.++|+||.-+ .......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999987421 33455555566777899999999999322 123334443 6899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++.++ ......++.+ .++|++++.||+|+..... ...+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~r---~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLER---NLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHHH---HHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHHH---HHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 9999999987533 2233333332 3699999999999754322 23333333 45899999999
Q ss_pred CCCHHHHHHHH
Q 030113 163 GDGLVDGLEWI 173 (183)
Q Consensus 163 ~~gi~~~~~~i 173 (183)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=2.8e-24 Score=140.63 Aligned_cols=145 Identities=21% Similarity=0.154 Sum_probs=101.8
Q ss_pred EEcCCCCCHHHHHHHhccCCccc-c--cCcccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhcc--CCCEEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVT-T--HPTVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYYR--GTHAVIV 90 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~d~ii~ 90 (183)
++|++|+|||||++++.+..... . ..+.......+.+.+..+.+|||||+..+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999998875322 2 2344455556677778999999999876543 3455554 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+|++++.... .++..+.. .++|+++|+||+|+.+........+.+. ...+.+++++|+.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998764432 23333322 3589999999999865432221111221 1224579999999999999999
Q ss_pred HHHHHhh
Q 030113 171 EWISQRV 177 (183)
Q Consensus 171 ~~i~~~~ 177 (183)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 159
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=5.5e-24 Score=146.42 Aligned_cols=164 Identities=27% Similarity=0.377 Sum_probs=121.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+||+++|+.|+|||||++++.++.+.. +.++.+..+...... ..++.+|||+|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999998876 445555454443332 4679999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHH-----------HhhcCcCccC-CCceEEEEe
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI-----------TDALSLHSIK-NHDWHIQAC 158 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~ 158 (183)
|+|.++..++.+....|...+......+.|+++|+||+|+......... .......... .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999997776666665555544443356999999999999765321110 0000000000 112238999
Q ss_pred ecc--cCCCHHHHHHHHHHhhhc
Q 030113 159 SAL--TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~--~~~gi~~~~~~i~~~~~~ 179 (183)
|++ .+.+++++|......+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999998887754
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=7.9e-24 Score=158.88 Aligned_cols=158 Identities=25% Similarity=0.176 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-----------hHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-----------SWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 80 (183)
..++|+++|.+|+|||||++++++.+.....+ +.......+..++..+.+|||||..+... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999876433222 22233344555677999999999644321 1234
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+++.+|++++|+|++++.+..... .+..... .++|+++|+||+|+. +.....++...+.........++++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 678999999999999876654432 2222222 358999999999997 2222334444443333233557899999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.|++++|+++.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=4e-24 Score=145.17 Aligned_cols=159 Identities=17% Similarity=0.076 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE---------------------------------
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY--------------------------------- 58 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~--------------------------------- 58 (183)
++|+++|+.|+|||||+.++.+..... ...+....+....+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999996542110 11111111111111
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~ 138 (183)
....+.+|||||++++...+...+..+|++++|+|++++.........+...... ...|+++|+||+|+.+.....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999999888888889999999999998742111112222222111 1257999999999865322222
Q ss_pred HHhhcCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 ITDALSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..+.+.... .....++++++||++|+|++++++++.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222221111 01235679999999999999999999998876
No 162
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=3.3e-24 Score=144.10 Aligned_cols=158 Identities=23% Similarity=0.205 Sum_probs=113.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEE--EcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELV--YKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~--~~~~~~~~~D~~g~ 71 (183)
++.++|+++|+.++|||||+++|...... ....+.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999743310 12245556667777 78899999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC-----cC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS-----LH 146 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~-----~~ 146 (183)
.++...+...+..+|++|+|+|+.++-.. .....+..... .+.|+++|+||+|+... ...+..+.+. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 99999999999999999999999876332 22233333322 45889999999998722 1222222211 11
Q ss_pred ccCC-CceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 147 SIKN-HDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 147 ~~~~-~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.... ..++++++||++|.|++++++.+.+.++
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1111 3689999999999999999999998875
No 163
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=6.1e-24 Score=146.41 Aligned_cols=161 Identities=19% Similarity=0.155 Sum_probs=114.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCCChh--------hHhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGGQER--------LRTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (183)
..+.-.|+|+|.||+|||||+|++++......++-..++. ..+..+..++.++||||-.+ +.......
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3466789999999999999999999998766554444332 33445789999999999322 23344556
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeec
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+.++|++++|+|++++.. ....+....+.. .+.|+++++||+|...+.. ...+.+.+.. ......++++||
T Consensus 83 l~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA 154 (298)
T COG1159 83 LKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISA 154 (298)
T ss_pred hccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeec
Confidence 789999999999987532 223333333322 3579999999999876654 2333333322 223337999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++.+.+.+.+.+.+.++
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999999988764
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=2.6e-23 Score=137.92 Aligned_cols=155 Identities=23% Similarity=0.196 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh----------H-hhHHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL----------R-TSWATY 81 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 81 (183)
.++|+++|++|+|||||++++.+....... .+.......+..++..+.+|||||..+. . .....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999887643211 2222223345556778999999996432 1 112345
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+..+|++++|+|++++.+.... ..+..... .+.|+++++||+|+.+. .......+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988665433 22222221 35899999999998765 22333333333222222356899999
Q ss_pred cccCCCHHHHHHHHHHh
Q 030113 160 ALTGDGLVDGLEWISQR 176 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~ 176 (183)
+++++|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=6.8e-24 Score=138.54 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCCh----hhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQE----RLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
+|+++|++|+|||||++++.+... ...++.++ .+... .+|||||.. ++.......++.+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999876542 11222222 22221 269999962 3333334457899999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
++..++ ...++..+ ..+.|+++++||+|+.+. ....+.+..... ....|++++||++++|++++++++.
T Consensus 75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 988665 22344432 135789999999998543 333333332221 1125899999999999999999998
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+.+.
T Consensus 144 ~~~~~~ 149 (158)
T PRK15467 144 SLTKQE 149 (158)
T ss_pred Hhchhh
Confidence 877543
No 166
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=1.3e-23 Score=150.36 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=108.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc---eeEE-EEEcCeEEEEEEcCCChhh--------HhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS---NVEE-LVYKNIRFEAWDVGGQERL--------RTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 82 (183)
.+.-.|+++|++|+|||||+|++++......++...+ .... ...++.++.++||||.... .......+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 4566799999999999999999998876543332222 2222 2225579999999996432 22334567
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
.++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+..+.+.. .....+++++||+
T Consensus 83 ~~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~ 154 (292)
T PRK00089 83 KDVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISAL 154 (292)
T ss_pred hcCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCC
Confidence 889999999999873 22223333333332 35899999999999732 222222222221 1234579999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++.|++++++++.+.+.+.++
T Consensus 155 ~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999876653
No 167
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=2.3e-23 Score=155.18 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=107.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHhh--------HHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRTS--------WATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (183)
+..++|+++|++|+|||||+|++++........ |.......+.+++..+.+|||||....... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 467999999999999999999999875432222 222333456667889999999998554322 24567
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|++++|+|++++.++... |+..... .++|+++|+||+|+.+. ...++. ...+.+++.+|+++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence 899999999999988776654 4444422 36899999999998643 111111 12234689999998
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
.|++++++.+.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6899999888887754
No 168
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1.1e-23 Score=137.61 Aligned_cols=145 Identities=21% Similarity=0.155 Sum_probs=100.2
Q ss_pred EEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhccCCCEE
Q 030113 21 IIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYYRGTHAV 88 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (183)
+++|++|+|||||++++.+..... ...+...........+..+.+|||||...... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875322 12233344455666778999999999877433 445567889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
++|+|+.++.+... .++...+.. .+.|+++|+||+|+.+.... ...+.. ....+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEEecccCCCHHH
Confidence 99999987543322 222233222 35899999999998754322 111111 1112589999999999999
Q ss_pred HHHHHHHhh
Q 030113 169 GLEWISQRV 177 (183)
Q Consensus 169 ~~~~i~~~~ 177 (183)
+++++++++
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 169
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=5.4e-24 Score=141.12 Aligned_cols=131 Identities=24% Similarity=0.358 Sum_probs=102.8
Q ss_pred ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe
Q 030113 45 THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV 120 (183)
Q Consensus 45 ~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (183)
+.+|++..+.. +.. ..+++.+|||+|++++...+..+++++|++|+|||++++.+|..+..|+..+..... ...|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe
Confidence 56778766643 233 458899999999999999999999999999999999999999999989888876532 5689
Q ss_pred EEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 121 VLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 121 vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+++|+||+|+.+. ....+..... ...+..++++||++|.|++++|+++++.+.+.+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999998542 2222222211 223456999999999999999999999987643
No 170
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=4e-26 Score=145.15 Aligned_cols=159 Identities=20% Similarity=0.345 Sum_probs=129.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE----EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE----ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+|++|+|+.++||||++.++|.+-|.. +..++++... .+..++++..+||++|++.+......|++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 55999999999999999999999888765 5567776543 234467888999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
||..+|..||+....|...+.... ..+|.++|-||+|+.++... ....+-++ +....+++.+|+++..|+..+
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la----k~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA----KKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH----HHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999987654 56999999999998754321 11111111 233456999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|..+++.+..+
T Consensus 173 F~YLaeK~~q~ 183 (246)
T KOG4252|consen 173 FAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=1.6e-23 Score=141.76 Aligned_cols=162 Identities=20% Similarity=0.171 Sum_probs=105.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeEEEE-EcCeEEEEEEcCCC----------hhhHhhHH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVEELV-YKNIRFEAWDVGGQ----------ERLRTSWA 79 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~~~ 79 (183)
......++|+++|++|+|||||++++++.. .....++.+.+...-. ..+.++.+|||||. +.+.....
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 344567999999999999999999999876 3444445443322111 12478999999994 33444445
Q ss_pred hhccCC---CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 80 TYYRGT---HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 80 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.+++.+ +++++|+|.+++.+... .++...+.. .+.|+++++||+|+.+....+...+.+.... .....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceE
Confidence 555544 67888999876543322 222222222 3588999999999865433333222222111 11145799
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++|++++.|++++++.+.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999887754
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=5.9e-23 Score=152.28 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCe-EEEEEEcCCChhh--Hhh------HHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNI-RFEAWDVGGQERL--RTS------WATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~------~~~~~~~~ 85 (183)
++|+++|.+|+|||||+|++.+.... ....|.......+...+. .+.+|||+|..+. ... +...++.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999987642 223455555555666553 8899999997331 112 23346889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE-EEEeecccCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH-IQACSALTGD 164 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 164 (183)
|++++|+|++++.++.....+.. .+......+.|+++|+||+|+.+... ...... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 99999999999877666533222 22222224689999999999864321 111111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++++++.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998854
No 173
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=7.5e-23 Score=150.92 Aligned_cols=157 Identities=22% Similarity=0.190 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEc-CeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYK-NIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||++++++.... ...+|...+...+.+. ...+.+||+||... +...+..+++.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 38999999999999999999876521 1233445555556665 68899999999532 2233445567799
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|+++. .++.....+...+..+.. ..++|+++|+||+|+... ...+.+..... ..+++++||++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l-----~~~i~~iSA~t 311 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL-----GPKVFPISALT 311 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh-----CCcEEEEeCCC
Confidence 99999999864 456666555555543321 246899999999998432 12222211111 14699999999
Q ss_pred CCCHHHHHHHHHHhhhccC
Q 030113 163 GDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~ 181 (183)
++|++++++++.+.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 312 GQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999998886654
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=2.6e-23 Score=159.24 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=109.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc---CcccceeEEEEEcCe-EEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVGSNVEELVYKNI-RFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+..+|+++|++++|||||++++.+..+.... .|.......+.+.+. .+.+|||||++.+...+...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 46689999999999999999999887654421 233333344555444 89999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccCCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gi 166 (183)
|+|++++..-. ....+... ...++|+++++||+|+... ...++.+.+..... .....+++++||++|+|+
T Consensus 165 VVda~dgv~~q-T~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQ-TIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHh-HHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 99998753211 11222222 1246899999999998643 33333333321110 012357999999999999
Q ss_pred HHHHHHHHH
Q 030113 167 VDGLEWISQ 175 (183)
Q Consensus 167 ~~~~~~i~~ 175 (183)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999865
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5.8e-23 Score=153.39 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
...|+++|.||+|||||+++|.+..... ..+|...+...+...+..+.+||+||... .......+++.+|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 3789999999999999999998764321 23455566666777888999999999421 2223344578899
Q ss_pred EEEEEEeCCCc----ccHHHHH---HHHHHHhCC-------CCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccCCC
Q 030113 87 AVIVVIDSTDR----ARISIMK---DELFRLLGH-------EDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIKNH 151 (183)
Q Consensus 87 ~ii~v~d~~~~----~s~~~~~---~~~~~~~~~-------~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~ 151 (183)
++++|+|+++. +.+..+. ..+..+... ....++|+++|+||+|+.+..... .+...+. ..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----AR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----Hc
Confidence 99999999853 2333333 333333211 022468999999999986432211 1122221 22
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++++++||++++|++++++++.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 46799999999999999999999887653
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.7e-22 Score=151.89 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=110.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCChhh----------H-hhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQERL----------R-TSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~ 79 (183)
...++|+++|++|+|||||++++++.......+..+++ ...+...+..+.+|||||..+. . ....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35699999999999999999999987643333333322 2334457788999999995321 1 1123
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+.....++.+.+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 4678899999999999876554432 2222222 3589999999999874433344444443333233567899999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|+++.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877543
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=1.3e-22 Score=133.70 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc----eeEEEEEcCeEEEEEEcCCChhhH--------hhHHhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS----NVEELVYKNIRFEAWDVGGQERLR--------TSWATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 83 (183)
...+|+++|++|+|||||++++.+............ ...........+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998765332221111 112233355789999999964322 23345578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD-AMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+....+.. .....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence 899999999999872 1222223232222 2588999999999873 2222333333222 22345799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
+.|+++++++|.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998754
No 178
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=3.5e-23 Score=138.14 Aligned_cols=148 Identities=22% Similarity=0.240 Sum_probs=95.1
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeE--EEEEcCeEEEEEEcCCCh----------hhHhh
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVE--ELVYKNIRFEAWDVGGQE----------RLRTS 77 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~----------~~~~~ 77 (183)
...+.+.++|+|+|++|+|||||++++.+.. ...+.++.+.+.. .+..+ ..+.+|||||.. .+...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 3445788999999999999999999999876 3334444443322 12222 379999999942 23333
Q ss_pred HHhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCC
Q 030113 78 WATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKN 150 (183)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~ 150 (183)
...+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+.+.... .++.+.+... .
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---A 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---c
Confidence 444554 35899999999875443333 22222222 36899999999998654322 2222222221 2
Q ss_pred CceEEEEeecccCCCHH
Q 030113 151 HDWHIQACSALTGDGLV 167 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~ 167 (183)
..++++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 23579999999999974
No 179
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.2e-22 Score=154.80 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC-------ccc-cc------Cccccee----EEEEEc-----CeEEEEEEcCCChh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE-------VVT-TH------PTVGSNV----EELVYK-----NIRFEAWDVGGQER 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~-------~~~-~~------~~~~~~~----~~~~~~-----~~~~~~~D~~g~~~ 73 (183)
-.+++++|+.++|||||+++++... +.. +. ...|+++ ..+.+. ...+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999997642 111 11 1123322 223332 37899999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
+...+..+++.+|++++|+|++++.+......|+... . .+.|+++|+||+|+.... ..+..+.+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9999999999999999999999876666555544333 2 357999999999986432 22222222111 111123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.++++||++|.|++++++++.+.+..
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999998764
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=8.6e-23 Score=159.93 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=111.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+...|+|+|+.++|||||+++|.+..+... ..|.......+.+.+..+.+|||||++.|...+...+..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35778999999999999999999977655321 122333334566677899999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccCCCH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~gi 166 (183)
|+|+++...-. ....+... ...++|+++++||+|+... ....+...+..... ....++++++||++|.|+
T Consensus 367 VVdAddGv~~q-T~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQ-TIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHh-HHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99998753211 11222222 2246899999999999643 22333332221110 113478999999999999
Q ss_pred HHHHHHHHHh
Q 030113 167 VDGLEWISQR 176 (183)
Q Consensus 167 ~~~~~~i~~~ 176 (183)
+++++++...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.2e-22 Score=151.07 Aligned_cols=147 Identities=22% Similarity=0.189 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCC--------hhhHhhHHhhccCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQ--------ERLRTSWATYYRGTH 86 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 86 (183)
+|+++|.+|+|||||+|++.+........ |.........+.+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999876433222 333445566778889999999995 445566777889999
Q ss_pred EEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|+.++.+.. .+..++.. .++|+++|+||+|+....... .+... ....+++++||++|.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~~--~~~~~-----lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAVA--AEFYS-----LGFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCcccccH--HHHHh-----cCCCCeEEEeCCcCC
Confidence 999999998754332 22233322 358999999999986543211 11111 112258999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030113 165 GLVDGLEWISQRVTG 179 (183)
Q Consensus 165 gi~~~~~~i~~~~~~ 179 (183)
|++++++++.+.+.+
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999988754
No 182
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=1e-22 Score=133.17 Aligned_cols=151 Identities=23% Similarity=0.138 Sum_probs=105.7
Q ss_pred EEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEc-CeEEEEEEcCCChhhH-------hhHHhhccCCCEEE
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYK-NIRFEAWDVGGQERLR-------TSWATYYRGTHAVI 89 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 89 (183)
++|++|+|||||++++.+....... .+........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999887554222 2222333333333 6799999999965543 34455778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|+|+++..+..... +..... ..+.|+++|+||+|+.......................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887665554 222222 246899999999998766544443221222333446778999999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=2.6e-22 Score=158.02 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=106.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE----EEEEcCeEEEEEEcCCChh--------hHhhHHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE----ELVYKNIRFEAWDVGGQER--------LRTSWATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 81 (183)
+....+|+++|.+|+|||||+|++++........+.|++.. ...+.+..+.+|||||... +......+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34457899999999999999999998765444444444332 3344678999999999653 34455667
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++.+|++++|+|+++.- ......+...+.. .++|+++|+||+|+.... ....+.... ..+ ..+++||+
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECC
Confidence 89999999999998642 2222233333322 469999999999985432 111121111 111 25789999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++++++++.+.+
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999999998865
No 184
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.4e-23 Score=131.07 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc---cccCccc----ceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVG----SNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
||+|+|++|+|||||++++++..+. ...+..+ ............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 1122222 22222222344589999999998888877779999999999
Q ss_pred EeCCCcccHHHHHH---HHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 92 IDSTDRARISIMKD---ELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 92 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
||++++.++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 44444332 24599999999998
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.4e-22 Score=146.70 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcC-eEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKN-IRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
..|+++|.||+|||||+|+|.+.... ...+|.......+.... ..+.++||||... .......+++.+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 37999999999999999999876531 12244445555566654 4699999999532 2233345688999
Q ss_pred EEEEEEeCC---CcccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDST---DRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
++++|+|++ +...+.....+...+.... ...+.|+++|+||+|+.......+..+.+... .....+++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999998 3445565555555554321 12358999999999986442222222222111 01122589999999
Q ss_pred CCCHHHHHHHHHHhhhccCC
Q 030113 163 GDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~~ 182 (183)
+.|++++++++.+.+.+.++
T Consensus 318 g~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcc
Confidence 99999999999999877543
No 186
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=3.9e-23 Score=158.79 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC---ccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE---VVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.|+++|++++|||||++++.+.. ++. ...|....+..+..++..+.+||+||++++...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998643 221 12344444555666778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhcCcCc--cC-CCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPAEITDALSLHS--IK-NHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~S~~~~~gi~ 167 (183)
+|++++.. ......+.. +.. .++| +++|+||+|+.+........+...... .. ..+++++++|+++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987421 111122221 111 2466 999999999975432222222211110 01 125789999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++++++.+.+...
T Consensus 156 eL~~~L~~l~~~~ 168 (581)
T TIGR00475 156 ELKKELKNLLESL 168 (581)
T ss_pred hHHHHHHHHHHhC
Confidence 9999988766543
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=5e-22 Score=156.44 Aligned_cols=159 Identities=15% Similarity=0.074 Sum_probs=111.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChh----------hHhh-HHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQER----------LRTS-WAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~ 80 (183)
..++|+++|.+|+|||||++++.+..... ...|.......+.+++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 45899999999999999999999887422 22233333344566788899999999532 1111 134
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+......+...+..........+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 478899999999999887766553 3333322 36899999999999754333333333322211224457899999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887764
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.8e-22 Score=150.03 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQER--------LRTSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (183)
++|+++|.+|+|||||++++.+....... .+.........+.+..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987643222 233344556677789999999999876 334456678899
Q ss_pred CEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
|++++|+|++++.+.. .+..++.. .+.|+++|+||+|+.+.. ....+.... ....++++||++|
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~~--~~~~~~~~l-----g~~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDEE--ADAYEFYSL-----GLGEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccch--hhHHHHHhc-----CCCCCEEEEeeCC
Confidence 9999999998754332 23333332 268999999999975421 122222111 1113789999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++.+..
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998743
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=2.8e-22 Score=155.88 Aligned_cols=157 Identities=21% Similarity=0.235 Sum_probs=109.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCc--ccceeEEEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPT--VGSNVEELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~--~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+..+|+|+|++++|||||++++....+... ..| .+.....+.. ....+.+|||||++.|...+..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999987665431 122 2222222222 35899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc----CCCceEEEEeecccC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI----KNHDWHIQACSALTG 163 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~ 163 (183)
+++|+|++++...... ..+..+ ...++|+++++||+|+... ...++.+.+..... ....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999875322211 222222 1246899999999998653 22333333321100 112468999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
.|++++++++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987653
No 190
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=8.2e-23 Score=127.11 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=131.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+.-.+||.++|++..|||||+-++.++++.+ ...+.|++... +.. ..+.+.+||.+|++++....+-..+++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44567999999999999999999999998854 55777766543 333 45788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++++|.+.++.+..+..|+........ ..+| ++|++|.|+.-... .++....-+...++..+++.|+||+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 9999999999999999999999876542 2344 57899999643222 222222222333344677899999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
+..+|..+...+.+.++
T Consensus 174 v~KIFK~vlAklFnL~~ 190 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHHHHHHhCCce
Confidence 99999999988877664
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=4.7e-22 Score=144.25 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (183)
..|+|+|.||||||||+|+|++....-... |....+....+.+..+.++||+|-+. ...+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988765444 44455667778888999999999442 23445666889
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
||++|+|+|...+-+ .....+...+.. .++|+++|+||+|-..... ...+.+.+ .-...+++||.+|.
T Consensus 84 ADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~--~~~efysl-----G~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKAEE--LAYEFYSL-----GFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchhhh--hHHHHHhc-----CCCCceEeehhhcc
Confidence 999999999976422 222223333221 4699999999999753221 11122211 11249999999999
Q ss_pred CHHHHHHHHHHhhh
Q 030113 165 GLVDGLEWISQRVT 178 (183)
Q Consensus 165 gi~~~~~~i~~~~~ 178 (183)
|+.++++++.+.++
T Consensus 152 Gi~dLld~v~~~l~ 165 (444)
T COG1160 152 GIGDLLDAVLELLP 165 (444)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999973
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=4e-22 Score=144.61 Aligned_cols=157 Identities=25% Similarity=0.203 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCccc----ceeEEEEEcCeEEEEEEcCCChhhH-----------hhHHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG----SNVEELVYKNIRFEAWDVGGQERLR-----------TSWAT 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~~ 80 (183)
..++|+|+|.||+|||||+|++++.+..-.++..| .-...+.+++.++.++||+|..+-. .....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 45999999999999999999999998765554444 4445567789999999999943321 12234
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
.+..+|.+++|+|++++-+ .....+..+. ...+.++++++||||+.+. ....+....+.........++++++
T Consensus 257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i---~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGIS--EQDLRIAGLI---EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCch--HHHHHHHHHH---HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 4678999999999998733 2322222322 2356899999999998765 4445555555555545577899999
Q ss_pred ecccCCCHHHHHHHHHHhh
Q 030113 159 SALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~ 177 (183)
||+++.|+.++++++.+..
T Consensus 332 SA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EecCCCChHHHHHHHHHHH
Confidence 9999999999999887643
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.89 E-value=3e-22 Score=149.82 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|++++|||||+++|+...-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 467899999999999999999999732210 1223444555566677
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--- 136 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--- 136 (183)
+..+.+|||||++++...+...+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999999887766677889999999999987312211112222222211 12479999999998652211
Q ss_pred ---HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 137 ---AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223468999999999999873
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=2.5e-21 Score=149.19 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=109.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (183)
.+..+++|+|+.++|||||+.+++... .. . ...|.......+.+. ...+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 445689999999999999999997521 10 0 112222222333332 578999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH 151 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (183)
.++...+..+++.+|++++|+|++++........|... .. .+.|+++|+||+|+..... .+..+.+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCC
Confidence 99999999999999999999999987554444333322 21 3588999999999864322 2222222111 1112
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...++++||++|.|++++++++.+.+..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2358999999999999999999988764
No 195
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=8.9e-22 Score=132.31 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc----------c---------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV----------V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
.++|+++|+.++|||||+++|++... . ....|.......+..++.++.++||||+.++...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 1112333333444556788999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhcCcCccCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-A----EITDALSLHSIKNH 151 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~ 151 (183)
....+..+|++++|+|+..+-. ......+..+.. .++| +++++||+|+...... . ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 8888999999999999986522 112222333222 2455 7899999998643221 1 22233222222234
Q ss_pred ceEEEEeecccCCCH
Q 030113 152 DWHIQACSALTGDGL 166 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi 166 (183)
+++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 689999999999985
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=6.3e-22 Score=148.10 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=101.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|+.++|||||+.+|+.. ... ....|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 567899999999999999999999742 111 0122333444556667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMT--P 136 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~ 136 (183)
...+.+|||||++++.......+..+|++++|+|+++++++.... .+...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 889999999999998877777789999999999999875331111 1111111111 2357999999999964221 1
Q ss_pred ----HHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 137 ----AEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222357899999999999986
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.88 E-value=1.4e-21 Score=122.75 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCC----ChhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGG----QERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
||+++|+.|+|||||+++|.+.+. .+..|..+.+. + .++|||| ...+.........++|.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999987654 22333222222 1 4489999 344455555556799999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+++.+. ....+... .++|+|-|+||+|+. ++.+.....+.+...... .+|++|+.+|+|++++.++|
T Consensus 74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 987432 22222222 348999999999998 344445555555444322 37999999999999999987
Q ss_pred H
Q 030113 174 S 174 (183)
Q Consensus 174 ~ 174 (183)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=8.8e-21 Score=121.74 Aligned_cols=156 Identities=28% Similarity=0.396 Sum_probs=124.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc-------------cCcccceeEEEEEcC-eEEEEEEcCCChhhHhhHH
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-------------HPTVGSNVEELVYKN-IRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 79 (183)
.....||+|+|+.++||||++++++....... ..|+...+....+.. ..+.+++||||+++...|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45778999999999999999999987663211 134445555555544 8999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++.+.++|+++|.+.+..+ -...+..++.+.. ..|+++.+||.|+.+....+++.+.+.... ...+.++.+
T Consensus 87 ~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999999877 3344444444432 199999999999998888888887776442 466899999
Q ss_pred cccCCCHHHHHHHHHHh
Q 030113 160 ALTGDGLVDGLEWISQR 176 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~ 176 (183)
+.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999988766
No 199
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=2.3e-21 Score=143.92 Aligned_cols=161 Identities=20% Similarity=0.112 Sum_probs=105.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc------cCcccceeEE--------------EEE------------cCeE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT------HPTVGSNVEE--------------LVY------------KNIR 62 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~------~~~~~~~~~~--------------~~~------------~~~~ 62 (183)
++.++|+++|+.++|||||+++|.+...... ..|....+.. ++. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 5789999999999999999999965422110 1111111100 001 1468
Q ss_pred EEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
+.+||+||++++...+......+|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999998888889999999999999653112222233222 111 22578999999998754322111111
Q ss_pred cCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 143 LSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 143 ~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.... .....++++++||++|+|+++++++|.+.+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 11110 0123578999999999999999999998765
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=8.2e-21 Score=131.21 Aligned_cols=149 Identities=23% Similarity=0.213 Sum_probs=102.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhh-------HhhHHhhccCCCEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERL-------RTSWATYYRGTHAV 88 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~i 88 (183)
+++++|++|+|||||++++.+..... ..+|.......+.+.+.++++||+||..+. ......+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999998865321 223444555566778899999999996432 23445678999999
Q ss_pred EEEEeCCCccc-HHHHHHHHHHH----------------------------------------hC---------------
Q 030113 89 IVVIDSTDRAR-ISIMKDELFRL----------------------------------------LG--------------- 112 (183)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~--------------- 112 (183)
++|+|++++.. ...+...+... +.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 22222222110 00
Q ss_pred ---------CCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 113 ---------HEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 113 ---------~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+|+++|+||+|+.+. .+... +.. ..+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LAR------QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 001123799999999998643 22221 111 12489999999999999999998865
No 201
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.87 E-value=4.8e-21 Score=142.19 Aligned_cols=162 Identities=20% Similarity=0.120 Sum_probs=104.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEE--------------EEEc------------C
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEE--------------LVYK------------N 60 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~--------------~~~~------------~ 60 (183)
..++.++|+++|+.++|||||+.+|.+..... ...|....+.. +... .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 45678999999999999999999996532111 11222211100 0000 2
Q ss_pred eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--
Q 030113 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-- 138 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-- 138 (183)
..+.+|||||++++..........+|++++|+|++++.........+... ... ...|+++|+||+|+.+.....+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 57999999999998877777777889999999999653111111222221 111 1246899999999975433221
Q ss_pred --HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 139 --ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+...+... .....+++++||+++.|+++++++|.+.+..
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 22211111 1235689999999999999999999987653
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=2.5e-21 Score=133.91 Aligned_cols=155 Identities=23% Similarity=0.187 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc--------------c-------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV--------------T-------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|+.|+|||||+++++...-. . ...+.......+.+++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753110 0 112333445667778999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---HHHHh-------------
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---AEITD------------- 141 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---~~~~~------------- 141 (183)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+...... .++.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999986432 23333333322 36899999999998642110 01111
Q ss_pred -------------------------------------------hcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 142 -------------------------------------------ALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 142 -------------------------------------------~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.+........-+|++..||.++.|++.+++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 1111111235678999999999999999999998775
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.87 E-value=5.7e-21 Score=146.78 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--Cccc-----------------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhH
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--EVVT-----------------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW 78 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (183)
.+|+|+|+.++|||||+++|+.. .+.. ...|+......+.+++.++.+|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999752 2211 1234444455677889999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhcCcCcc--CCCce
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP---AEITDALSLHSI--KNHDW 153 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (183)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.+.... .++.+.+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999998642 3445556665544 35889999999998643221 222222211111 12356
Q ss_pred EEEEeecccCC----------CHHHHHHHHHHhhhc
Q 030113 154 HIQACSALTGD----------GLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~~~~~S~~~~~----------gi~~~~~~i~~~~~~ 179 (183)
+++++||++|. |++.+|+.+++.++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999995 899999999998864
No 204
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-21 Score=123.24 Aligned_cols=163 Identities=32% Similarity=0.491 Sum_probs=139.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
++.=|++++|-.|+|||||++.+-.+......||...+...+...+++++.+|.+|+...+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 56778999999999999999999888888888999888888999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc------------CccCCCceEEEEeeccc
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL------------HSIKNHDWHIQACSALT 162 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~S~~~ 162 (183)
.+.++|.+.+..+...+......+.|+++.+||+|.......++..-.+.. .....+.+.+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999999999988777788999999999999877665555443321 11112456689999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030113 163 GDGLVDGLEWISQRV 177 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~ 177 (183)
+.|--+.|.|+.+.+
T Consensus 178 ~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQYI 192 (193)
T ss_pred cCccceeeeehhhhc
Confidence 999888888876643
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.87 E-value=3.8e-21 Score=147.63 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=113.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCcccc-------------cCccc----ceeEEEEEcCeEEEEEEcCCChhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVTT-------------HPTVG----SNVEELVYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (183)
.+-.+|+|+|+.++|||||+++++. +.+... ..+.+ .....+.+++.++.+|||||+.++.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3457899999999999999999986 222211 11223 2334456688999999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcCcc--CC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLHSI--KN 150 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~~~--~~ 150 (183)
..+..+++.+|++++|+|+++... .....++..... .++|.++++||+|+....... ++.+.+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999987532 223334444333 358899999999986543222 22222211011 12
Q ss_pred CceEEEEeecccCC----------CHHHHHHHHHHhhhc
Q 030113 151 HDWHIQACSALTGD----------GLVDGLEWISQRVTG 179 (183)
Q Consensus 151 ~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~~ 179 (183)
..+|++++||++|. |+..+++.+++.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 45789999999998 689999999988864
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.87 E-value=7.4e-21 Score=145.66 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-----ccCcccceeEEEEE----------------cCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----THPTVGSNVEELVY----------------KNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~ 74 (183)
+..-|+++|++++|||||++++.+..+.. ..++.+........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999998876532 22333433322211 1124889999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------HH
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--------------PA 137 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--------------~~ 137 (183)
...+..+++.+|++++|+|+++. +++..+. + + .. .+.|+++++||+|+.+... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~---l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-I---L-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-H---H-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999999999999999999873 3333321 1 1 11 3689999999999864210 00
Q ss_pred HHHh-----------hcCcCc----------cCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 138 EITD-----------ALSLHS----------IKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 138 ~~~~-----------~~~~~~----------~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
.+.. .+.... ......+++++||++|+|++++++++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0100 111110 01245789999999999999999988653
No 207
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=9.7e-21 Score=149.04 Aligned_cols=151 Identities=20% Similarity=0.164 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCChhhHhh----------HHhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQERLRTS----------WATY 81 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 81 (183)
+.++|+++|++|||||||+|++.+... ...+..|++ ...+..++.++.+|||||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 457899999999999999999987654 223333333 3345567889999999997665321 1223
Q ss_pred c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 82 Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
+ +.+|++++|+|+++.++.. .++..+.+ .+.|+++++||+|+.+........+.+. +..+++++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEE
Confidence 2 4789999999998865422 23333322 3689999999999864332222222222 22346799999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
+++++|++++.+.+.+...
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999999887653
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=137.21 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=111.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (183)
+..++++++|.||+|||||+|+|++.+....+ +|-.+-...+..+++.+.++||+|.....+.. ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 46799999999999999999999998865544 44445556677899999999999965433322 3447
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+++|.+++|+|.+.+.+- ....+.. ....++|+++|.||.|+......... . ...+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~--~d~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~------~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDK--EDLALIE----LLPKKKPIIVVLNKADLVSKIELESE--K------LANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCch--hhHHHHH----hcccCCCEEEEEechhcccccccchh--h------ccCCCceEEEEecC
Confidence 889999999999986221 1111111 12256899999999999766442222 1 11233699999999
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
++|++.+.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999998877654
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.86 E-value=4.8e-21 Score=131.54 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEcCeEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYKNIRFE 64 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (183)
+|+++|+.++|||||+.+|+...- . ....|.......+.+++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999998853210 0 011233344455667889999
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-C--
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-T-- 135 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~-- 135 (183)
+|||||+.++...+...+..+|++++|+|++++.. .......+... ... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998888877788889999999999987421 11122222222 111 236899999999987321 1
Q ss_pred -HHHHHhh----cCcCccCCCceEEEEeecccCCCHH
Q 030113 136 -PAEITDA----LSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 136 -~~~~~~~----~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
..++.+. +.........++++++||++|+|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1222222 2222222346789999999999986
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=9.5e-21 Score=129.12 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----------------------------------ccCcccceeEEEEEcCeEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----------------------------------THPTVGSNVEELVYKNIRFE 64 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 64 (183)
+|+++|++++|||||+++|+...-.. ...|.......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999996532110 11223333344556778999
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhh
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDA 142 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~ 142 (183)
+|||||++++...+...++.+|++++|+|++++..-. ....+ .+.... ...++++|+||+|+.+.... .+....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988777777889999999999998763211 11111 121111 12457889999998643211 111112
Q ss_pred cCc--CccCCCceEEEEeecccCCCHHHH
Q 030113 143 LSL--HSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 143 ~~~--~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+.. ........+++++||+++.|+.+.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 111 111123457999999999999753
No 211
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=7.7e-21 Score=146.37 Aligned_cols=143 Identities=21% Similarity=0.187 Sum_probs=96.6
Q ss_pred cCCCCCHHHHHHHhccCCcc-cccC--cccceeEEEEEcCeEEEEEEcCCChhhHhh------HHhhc--cCCCEEEEEE
Q 030113 24 GLDNAGKTTTLYKLHLGEVV-TTHP--TVGSNVEELVYKNIRFEAWDVGGQERLRTS------WATYY--RGTHAVIVVI 92 (183)
Q Consensus 24 G~~~~GKStl~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (183)
|++|+|||||+|++.+.... .+.+ |.......+.+++.++.+|||||+.++... ...++ +++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987642 2222 222333445667788999999998775432 33333 4789999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++.+.. ..+..+..+ .++|+++|+||+|+.+........+.+. +..+.+++++||++|+|+++++++
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 99875432 222233322 3689999999999854322211112221 123457999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=6.1e-21 Score=147.26 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
-|+++|+.++|||||++++.+..... ...|+...+..+.. ++..+.+|||||++++...+...+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 57899999999999999998643221 23343333333333 356789999999999988888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPAEITDALSLHS--IKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++-. ......+. ++.. .+.| +++|+||+|+.+.....+..+.+.... ......+++++|+++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987421 11112222 2221 2344 679999999975433333222222111 112346899999999999999
Q ss_pred HHHHHHHhhhc
Q 030113 169 GLEWISQRVTG 179 (183)
Q Consensus 169 ~~~~i~~~~~~ 179 (183)
++++|.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999876544
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=9.1e-21 Score=130.00 Aligned_cols=151 Identities=22% Similarity=0.185 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc-----------------cC-------ccccee-----------------EEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT-----------------HP-------TVGSNV-----------------EELV 57 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~-----------------~~-------~~~~~~-----------------~~~~ 57 (183)
||+++|+.++|||||++++..+.+... .. ..++.. ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 588999999999999999976544210 00 111111 1223
Q ss_pred EcCeEEEEEEcCCChhhHhhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
..+..+.++||||++++.......+. .+|++++|+|+..+.. ......+..+. . .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~-~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL-A---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEECccccCHHH
Confidence 34678999999999998777666664 6899999999976532 11222222222 2 3588999999999865433
Q ss_pred HHHHH----hhcCcC---------------------ccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 136 PAEIT----DALSLH---------------------SIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 136 ~~~~~----~~~~~~---------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
..+.. +.+... .......|+|.+|+.+|+|+++++..|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 32222 222210 0112345899999999999999997764
No 214
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=6e-20 Score=120.41 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=110.5
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCC-cccccCcccceeEEEEEc-CeEEEEEEcCC----------ChhhHhhH
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE-VVTTHPTVGSNVEELVYK-NIRFEAWDVGG----------QERLRTSW 78 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g----------~~~~~~~~ 78 (183)
.+.+....-|+++|.+|+|||||+|++++.. ...++.|.|.+...--+. .-.+.++|.|| +++....+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 3445567899999999999999999999965 566777777554332222 12388999998 34555566
Q ss_pred Hhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhcCcCccCCC
Q 030113 79 ATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA----EITDALSLHSIKNH 151 (183)
Q Consensus 79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~ 151 (183)
..|++ +..++++++|+..+- ......+...+.. .+.|++++.||+|..+..... .+.+.+.... ...
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-~~~ 171 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-PDD 171 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC-Ccc
Confidence 66664 357899999998663 2333333333333 579999999999987754443 2332332221 111
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+ ++..|+..+.|++++...|.+.+...
T Consensus 172 ~~-~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 172 QW-VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred ce-EEEEecccccCHHHHHHHHHHHhhcc
Confidence 11 88889999999999999999877653
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.85 E-value=5.6e-20 Score=141.32 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=102.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEE---------c-------CeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVY---------K-------NIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~---------~-------~~~~~~~D~~g~~ 72 (183)
..+...|+++|++++|||||++++.+...... .++.+........ . -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 45677899999999999999999976553321 1233333222111 0 0127899999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-------------- 135 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-------------- 135 (183)
.+...+...+..+|++++|+|+++ ++++..+. .+ .. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999988888899999999999987 34443332 11 11 3689999999999852111
Q ss_pred HH-----------HHHhhcCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 136 PA-----------EITDALSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 136 ~~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.. ++...+..... ....++++++||++|+|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 01111111110 124678999999999999999988764
No 216
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.85 E-value=4.7e-20 Score=121.69 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeEE--EEEcCeEEEEEEcCCCh----------hhHhhHHhhcc--
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVEE--LVYKNIRFEAWDVGGQE----------RLRTSWATYYR-- 83 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~-- 83 (183)
.|+++|++|+|||||++.+.+... ....++.+.+... +.. ...+.+|||||.. .+...+..++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999995443 3344444433222 222 2389999999942 23344444443
Q ss_pred -CCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEee
Q 030113 84 -GTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACS 159 (183)
Q Consensus 84 -~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (183)
..+++++++|.....+.. .+..++.. .+.|+++++||+|+.................. .....+++++|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 457899999998653221 22233322 24789999999998644333322222221111 23445799999
Q ss_pred cccCCCHHHHHHHHHHhh
Q 030113 160 ALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~ 177 (183)
++++.|++++++++.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.85 E-value=1.6e-20 Score=139.00 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=107.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc----------c---------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV----------V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|++... . ....|.......+..++.++.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 57789999999999999999999975311 0 1112333333334446678999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
.......+..+|++++|+|++++.. ......+..+.. .++| +++++||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 8888777889999999999986422 112223332222 2466 67899999986432221 22222222222
Q ss_pred CCCceEEEEeecccCC--------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD--------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~~~~~i~~~~~ 178 (183)
....++++++|+++|. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2235789999999983 68888888887765
No 218
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-21 Score=123.25 Aligned_cols=159 Identities=24% Similarity=0.381 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..++++++|+.|.||||+.++.+.++|.. +.+|.|........ +.+++..|||.|++++......++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47999999999999999999999998876 66888988776544 34899999999999999998888888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
++|++..-.+.++..|...+.... .++|+++++||.|........ .........+..++++|++.+.|++.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~-----k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKA-----KPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccc-----ccceeeecccceeEEeecccccccccch
Confidence 999998888999999999987654 459999999999975442111 1112223356679999999999999999
Q ss_pred HHHHHhhhccC
Q 030113 171 EWISQRVTGKA 181 (183)
Q Consensus 171 ~~i~~~~~~~~ 181 (183)
-|+...+...+
T Consensus 162 l~LarKl~G~p 172 (216)
T KOG0096|consen 162 LWLARKLTGDP 172 (216)
T ss_pred HHHhhhhcCCC
Confidence 99999887654
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.85 E-value=1e-19 Score=127.92 Aligned_cols=110 Identities=21% Similarity=0.196 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc--cc-----------------------ccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV--VT-----------------------THPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
.+|+++|++|+|||||+++++...- .. ...++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999964211 00 0112223445677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++......+++.+|++++|+|+++.... ....++.. ... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-CRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-HHh---cCCCEEEEEECCccCC
Confidence 9888778889999999999999875322 22233322 222 4689999999999754
No 220
>PRK12735 elongation factor Tu; Reviewed
Probab=99.85 E-value=2.8e-20 Score=137.77 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=105.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-------Cc---c---------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-------EV---V---------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-------~~---~---------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|++++|||||+++|++. .+ . ....|.......+..++.++.++||||++++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 467899999999999999999999752 10 0 1112333333334446778999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCCH-H----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMTP-A----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.... . ++...+.....
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8888888889999999999987422 222233333322 346755 57999998643221 1 22222222211
Q ss_pred CCCceEEEEeecccCC----------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD----------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~ 178 (183)
....++++++|+.++. ++.++++.+.+.+.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1235789999999984 67888888887654
No 221
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=125.42 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=108.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE----EEEEcCeEEEEEEcCCCh------h------hHhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE----ELVYKNIRFEAWDVGGQE------R------LRTSW 78 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~------~------~~~~~ 78 (183)
.+.++|+|+|.||+|||||.|.+.+......+.-..++.. .+.-+..++.|+||||-- + +....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 5779999999999999999999999987765544443333 344478999999999921 1 11122
Q ss_pred HhhccCCCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-----------------HHHH
Q 030113 79 ATYYRGTHAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-----------------PAEI 139 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-----------------~~~~ 139 (183)
...+..+|.+++|+|+++...... .-..+..+ .+.|-++|.||.|...... ..++
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 334678999999999996432211 11222222 3578899999999754211 1112
Q ss_pred HhhcCcCc-----cC---C-CceEEEEeecccCCCHHHHHHHHHHhhhccCCC
Q 030113 140 TDALSLHS-----IK---N-HDWHIQACSALTGDGLVDGLEWISQRVTGKAPS 183 (183)
Q Consensus 140 ~~~~~~~~-----~~---~-~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~~ 183 (183)
.+...... .. . +.-++|.+||++|+|++++.+++..+++..+|.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 22211111 00 1 233599999999999999999999999988773
No 222
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=9.5e-20 Score=128.17 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc--c-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV--V-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|++++|||||+++++...- . ....+.......+.+++.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999963110 0 1122344445667778999999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+++.+|++++|+|+.+...- .....+..... .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 99999999999999999875321 12233333322 4589999999999863
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.83 E-value=2e-19 Score=127.18 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc---------------------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT---------------------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
+|+++|++|+|||||+++++...... ...+.......+.+++.++.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 48999999999999999986432110 112333444556678899999999999998888
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..++..+|++++|+|+++....... ..+.... ..+.|.++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCccCC
Confidence 88899999999999999876543222 2222222 23589999999999763
No 224
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.83 E-value=3.8e-19 Score=110.60 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeE-EEEE---cCeEEEEEEcCCChhh-HhhHHhhccCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVE-ELVY---KNIRFEAWDVGGQERL-RTSWATYYRGTH 86 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~-~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (183)
.+..|++|+|..++|||+++..++.++.. +..+|+.-.+. .+.. ..-.+.++||.|-... ..+-..|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 46789999999999999999999776543 23455543332 2222 2357899999996655 556678889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++||+..+++||+.....-..+-.+.....+|+++++||.|+.++ .++....+..+++...+..+++++.+...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999887766666666666677999999999999754 333334444555667788999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
-+.|..++..+...
T Consensus 164 ~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 164 YEPFTYLASRLHQP 177 (198)
T ss_pred hhHHHHHHHhccCC
Confidence 99999999887654
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.83 E-value=1.2e-19 Score=135.01 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=97.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|+++|++++|||||+++|++.... ....|.......+..++.++.++||||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 567799999999999999999999864110 0111222223334456778999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-A----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+..+-. ......+..+.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888899999999999986521 222223333222 3467 7789999998753221 1 22233322222
Q ss_pred CCCceEEEEeecccCCC
Q 030113 149 KNHDWHIQACSALTGDG 165 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~g 165 (183)
....++++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999863
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=1.6e-19 Score=133.87 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-------c-----c-------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-------V-----V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-------~-----~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|.+.. . . ....|.......+..++.++.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997320 0 0 1223333334444446778999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
...+......+|++++|+|+.++-.. .....+..+.. .++|.+ +++||+|+.+..... ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 87777778889999999999874221 12223333322 245654 689999986532211 22233322222
Q ss_pred CCCceEEEEeecccCC--------CHHHHHHHHHHh
Q 030113 149 KNHDWHIQACSALTGD--------GLVDGLEWISQR 176 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~--------gi~~~~~~i~~~ 176 (183)
....++++++|+.++. ++.++++.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2234789999999875 345566655543
No 227
>PRK00049 elongation factor Tu; Reviewed
Probab=99.82 E-value=3.6e-19 Score=131.83 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=106.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|++.... ....|.......+..++.++.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999999762110 1112333333344446778999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCCCCCCC-HH----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDLKDAMT-PA----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (183)
.......+..+|++++|+|+.++.. ......+..+.. .++|.+ +++||+|+.+... .+ ++...+.....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 8888888899999999999987522 122223333222 347765 5899999864222 11 22222222222
Q ss_pred CCCceEEEEeecccCC----------CHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTGD----------GLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~----------gi~~~~~~i~~~~~ 178 (183)
....++++++|++++. |+..+++.|.+.+.
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 2245789999999875 56788888877553
No 228
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.81 E-value=8.8e-19 Score=133.22 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=82.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCccc-----------------------ccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVT-----------------------THPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++++. +.... ...++......+.+++.++.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999963 11000 0112223345577788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
|+.++......++..+|++++|+|+++.-.. ....++... . ..++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-R---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence 9999988888889999999999999875321 222333322 2 24689999999999864
No 229
>PRK13351 elongation factor G; Reviewed
Probab=99.81 E-value=2.1e-18 Score=135.96 Aligned_cols=115 Identities=21% Similarity=0.098 Sum_probs=88.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--------------c-------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--------------V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|+.++|||||+++++...- . ....|+......+.+....+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34668999999999999999999974210 0 12335555566777889999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
++...+..+++.+|++++|+|+++....... ..+..... .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 9999999999999999999999987655433 23333222 36899999999998753
No 230
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=8.7e-19 Score=129.41 Aligned_cols=156 Identities=22% Similarity=0.206 Sum_probs=112.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.+.+-|+++|+...|||||+.++-....... ..|..+--..+.. ....+.|+|||||+.|..+.....+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 4567789999999999999999965543221 1222222333343 346899999999999999999989999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC----CCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK----NHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~ 164 (183)
++|+|+.+. +...-.+..++....+.|++++.||+|+.+. .+..+...++..... .....++++||++|+
T Consensus 83 ILVVa~dDG-----v~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDG-----VMPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCC-----cchhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 999999987 2222233334444468999999999999743 444545444433222 245789999999999
Q ss_pred CHHHHHHHHHHh
Q 030113 165 GLVDGLEWISQR 176 (183)
Q Consensus 165 gi~~~~~~i~~~ 176 (183)
|+++|++.+.-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999987654
No 231
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.81 E-value=3.4e-19 Score=121.74 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc----cccCcccceeEEEEE-cCeEEEEEEcCCChhhHh-----hHHhhccCCCEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV----TTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRT-----SWATYYRGTHAV 88 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 88 (183)
||+++|+.++||||+.+.+..+-.+ ...+|..++...+.. ..+.+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999988766433 234676666666653 568999999999876543 356778999999
Q ss_pred EEEEeCCCccc---HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc----CcCc--cCCCceEEEEee
Q 030113 89 IVVIDSTDRAR---ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL----SLHS--IKNHDWHIQACS 159 (183)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~S 159 (183)
|||+|+...+- +..+...+..+.+. .++..+.++++|+|+..+....+..+.. .... .....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984432 23333444444333 3789999999999986543332222111 1111 011247899999
Q ss_pred cccCCCHHHHHHHHHHhhhccCC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
..+. .+-++|..+++.+.++.+
T Consensus 159 I~D~-Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTST-HHHHHHHHHHHTTSTTHC
T ss_pred CcCc-HHHHHHHHHHHHHcccHH
Confidence 8884 799999999999886643
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=120.59 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc---ccccCcccceeEEEEEcCeEEEEEEcCCCh------hhH--hhHHhhcc-
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV---VTTHPTVGSNVEELVYKNIRFEAWDVGGQE------RLR--TSWATYYR- 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~--~~~~~~~~- 83 (183)
....|+|.|.||||||||++++.+... +..-+|.+++...+..+..++|++||||-- +.. .+-...++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 558899999999999999999987653 234578889999999999999999999921 111 11112222
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
-.++++|++|++..+ +++.....+..+.... +.|+++|+||+|..+.....+....+... .......+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----~~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----GGEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----ccccccceeee
Confidence 358999999999665 5677777888876654 38999999999998665555554443322 22235677888
Q ss_pred cCCCHHHHHHHHHHhh
Q 030113 162 TGDGLVDGLEWISQRV 177 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~ 177 (183)
.+.+++.+-+.+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 8888887777766653
No 233
>PLN03126 Elongation factor Tu; Provisional
Probab=99.81 E-value=5.6e-19 Score=132.76 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=98.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc------c-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV------V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|++++|||||+++|++... . ....|.......+..++.++.++|+||++++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999985210 0 0112222333345557789999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMT-PA----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~-~~----~~~~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.++.. .....++..... .++| +++++||+|+.+... .+ ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888899999999999987632 222333333322 3466 788999999865322 11 22233322222
Q ss_pred CCCceEEEEeecccCC
Q 030113 149 KNHDWHIQACSALTGD 164 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~~ 164 (183)
....++++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3347899999998874
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.81 E-value=7.9e-19 Score=132.37 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=98.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc--c------------cc----------------------CcccceeEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T------------TH----------------------PTVGSNVEEL 56 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~------------~~----------------------~~~~~~~~~~ 56 (183)
..+..++|+++|++++|||||+++|+...-. . .. .|+......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4577899999999999999999999643210 0 00 1223333445
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT- 135 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~- 135 (183)
..++.++.++||||++++...+...+..+|++++|+|+.++-.-. ....+... ... ...|+++++||+|+.+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHH-HHh--CCCceEEEEEeeccccchhH
Confidence 556789999999999998777777789999999999998652111 11111111 111 1247899999999864321
Q ss_pred -HHHHHhhcCc--CccC-CCceEEEEeecccCCCHHHH
Q 030113 136 -PAEITDALSL--HSIK-NHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 136 -~~~~~~~~~~--~~~~-~~~~~~~~~S~~~~~gi~~~ 169 (183)
..++.+.+.. .... ....+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2222222211 0001 23578999999999999764
No 235
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-18 Score=114.41 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=121.3
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc---CCC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR---GTH 86 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d 86 (183)
....+.+.-.|+++|+.+||||+|+..+..+....+.++...+...+..+.....++|.||+.+.+.....++. .+-
T Consensus 31 ~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 31 KLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred HHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccce
Confidence 33444556789999999999999999999988877778888888888888888999999999999998888887 789
Q ss_pred EEEEEEeCCCcc-cHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc--------C---------
Q 030113 87 AVIVVIDSTDRA-RISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDALSL--------H--------- 146 (183)
Q Consensus 87 ~ii~v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--------~--------- 146 (183)
++++|+|..... ........+-.++... ....+|+++++||.|+......+...+.+.. +
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~e 190 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDE 190 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999986432 1333344444444332 3456999999999998654332211111100 0
Q ss_pred ------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 147 ------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 147 ------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+.+.++|++++ +++++-+|+.+.+
T Consensus 191 d~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 191 DIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00114567899999999 7999999998753
No 236
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.81 E-value=1.2e-18 Score=130.55 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=102.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|+.++|||||+.+|+... .. ....|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4678999999999999999999886411 00 0112333444556667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---H---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---I---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~ 132 (183)
+..+.++||||+.+|...+...+..+|++++|+|++++.- + ......+..... .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8899999999999999999998999999999999987531 1 123333333322 2444 679999999432
Q ss_pred ----CCCHHH----HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 133 ----AMTPAE----ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 133 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+....+ +.+.+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 122222 333333222223468999999999999864
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=6.5e-19 Score=120.60 Aligned_cols=108 Identities=21% Similarity=0.189 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccc----------------------cCcccceeEEEEE-----cCeEEEEEEcCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTT----------------------HPTVGSNVEELVY-----KNIRFEAWDVGGQ 71 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~----------------------~~~~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (183)
+|+++|+.++|||||+++++....... ..+.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999976432211 0111111122222 2478999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.++...+..++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888899999999999999987765432 233333322 348999999999975
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.80 E-value=2.1e-18 Score=129.13 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=101.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|+.++|||||+.+|+...- . +...|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46789999999999999999988853110 0 0112333444455667
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH-------HHHHHHHHHHhCCCCCCCC-eEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI-------SIMKDELFRLLGHEDLQHS-VVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~ 131 (183)
...+.++|+||+++|...+...+..+|++++|+|+++.. | ......+..... .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCC
Confidence 889999999999999999999999999999999998732 2 123333333222 245 578899999976
Q ss_pred CCC----C----HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 132 DAM----T----PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 132 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+.. . ..++...+.........++++++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1 223333333222233457899999999999853
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.80 E-value=1.4e-18 Score=129.75 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=108.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccC--cccceeE---------------EEEE-----------
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THP--TVGSNVE---------------ELVY----------- 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~--~~~~~~~---------------~~~~----------- 58 (183)
..+..++|+++|+..+|||||+.+|.+..... ... ..|+... .+..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45778999999999999999999998643211 111 1222211 0000
Q ss_pred -----cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 59 -----KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
-...+.++|+||++++...+...+..+|++++|+|+.++.........+... ... .-.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCH
Confidence 0247899999999999888888899999999999998742112222333222 111 12568999999998754
Q ss_pred CCHHHHHhhcCcC--ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 134 MTPAEITDALSLH--SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 134 ~~~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
....+..+.+... ......++++++||++|.|++++++.|.+.+..
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 3322222222111 011246789999999999999999999976653
No 240
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.80 E-value=1.4e-19 Score=118.60 Aligned_cols=126 Identities=26% Similarity=0.403 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhh---ccCCCEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATY---YRGTHAVI 89 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (183)
+...|+++|+.|+|||+|+.+|..+....+.++...+. .+.. ....+.++|+||+.+.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34578999999999999999999987766555553332 2222 45689999999999988765554 78899999
Q ss_pred EEEeCCCc-ccHHHHHHHHHHHhCCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 90 VVIDSTDR-ARISIMKDELFRLLGHE--DLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 90 ~v~d~~~~-~s~~~~~~~~~~~~~~~--~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
||+|.+.. ..+......+..++... .....|++|++||.|+........+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 99999743 34555555555554322 2356999999999999776554444433
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=1.6e-18 Score=129.67 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=104.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC------Ccc-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG------EVV-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~------~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++.++|+++|+.++|||||+++|.+. ... ....|.......+..++.++.++||||+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467899999999999999999999622 100 0122344444445556788999999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-HHHH----hhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-AEIT----DALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-~~~~----~~~~~~~~ 148 (183)
...+...+..+|++++|+|+.++.. ......+..+.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 8877777788999999999986532 112222222221 3577 5788999998743221 1121 22211111
Q ss_pred CCCceEEEEeecc---cCCC-------HHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSAL---TGDG-------LVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~---~~~g-------i~~~~~~i~~~~~ 178 (183)
....++++++|+. ++.| +.++++.+.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235789998875 4555 7888888887664
No 242
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.5e-18 Score=131.55 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccc--cCcccceeEEEEEcCeEEEEEEcCCChhh------HhhHHhhc--cC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTT--HPTVGSNVEELVYKNIRFEAWDVGGQERL------RTSWATYY--RG 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 84 (183)
+..+++++|+||+|||||+|++.+... ..+ .-|++-....+..++..++++|+||.-++ +.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 456799999999999999999988764 222 33444445556678888999999994322 12223333 35
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.|+++-|+|+++.++--.+.-++.+ .+.|++++.|++|..+. .+.+++.+. .++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~--------LGvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKL--------LGVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHH--------hCCCEEEEEe
Confidence 6999999999987543333333332 36889999999997543 223333333 3568999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|+|++++.+.+.+....+
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765544
No 243
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.79 E-value=1.4e-18 Score=117.48 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=95.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc---ceeEEEEE---cCeEEEEEEcCCChhhHhhH-----HhhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG---SNVEELVY---KNIRFEAWDVGGQERLRTSW-----ATYYRG 84 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~---~~~~~~~~---~~~~~~~~D~~g~~~~~~~~-----~~~~~~ 84 (183)
+++|+++|++|+|||||+|++.+..... ...+.+ ++.....+ ....+.+|||||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3789999999999999999999865432 112222 11111111 13478999999964322111 222567
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhcCc----Ccc--C
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---------PAEITDALSL----HSI--K 149 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---------~~~~~~~~~~----~~~--~ 149 (183)
+|.+++|.+. ++......+...+.. .+.|+++|+||+|+..... ..++.+.+.. ... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 244444444444333 2578999999999843211 1122221111 110 0
Q ss_pred CCceEEEEeecc--cCCCHHHHHHHHHHhhhccC
Q 030113 150 NHDWHIQACSAL--TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ~~~~~~~~~S~~--~~~gi~~~~~~i~~~~~~~~ 181 (183)
....++|.+|+. .+.|+..+.+.+...|.+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 123469999998 57999999999999887653
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.79 E-value=3.4e-18 Score=127.05 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c----------------------------------ccCcccceeEEEEEcCe
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T----------------------------------THPTVGSNVEELVYKNI 61 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~----------------------------------~~~~~~~~~~~~~~~~~ 61 (183)
++|+++|+.++|||||+.+|+...-. . ...|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999632210 0 01123333444555678
Q ss_pred EEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHH
Q 030113 62 RFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEI 139 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~ 139 (183)
++.++||||+++|...+...+..+|++++|+|+..+..-. ....+...... ...++++++||+|+.+... ..+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999999877778889999999999998653211 11112211111 1246889999999864321 1112
Q ss_pred HhhcCc--CccCCCceEEEEeecccCCCHHH
Q 030113 140 TDALSL--HSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.+.+.. .......++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 01112356799999999999875
No 245
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=119.19 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=111.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEc-CeEEEEEEcCCCh---------hhHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYK-NIRFEAWDVGGQE---------RLRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~---------~~~~~~~~~ 81 (183)
..-..|+++|.+|+|||||+|++.+.... ....|...+...+... +..+.+-||.|-- .|.+.. ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence 45689999999999999999999876542 3456777777777776 5889999999932 233322 23
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
...+|.++.|+|++++.....+. ....++........|+++|.||+|+..+... ...+... . . ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~---~-~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERG---S-P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhc---C-C-CeEEEEec
Confidence 56789999999999995444333 3333444444466999999999997654331 1111111 1 1 48999999
Q ss_pred cCCCHHHHHHHHHHhhhcc
Q 030113 162 TGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~ 180 (183)
+++|++++.+.|.+.+...
T Consensus 340 ~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 340 TGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cCcCHHHHHHHHHHHhhhc
Confidence 9999999999999988744
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.78 E-value=3.8e-18 Score=133.31 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=102.0
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc--------------cc----------------------Ccc
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--------------TH----------------------PTV 49 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--------------~~----------------------~~~ 49 (183)
..+......+..++|+++|++++|||||+++|+...-.. .. .|.
T Consensus 13 ~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Ti 92 (632)
T PRK05506 13 LAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92 (632)
T ss_pred HHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCc
Confidence 345555566788999999999999999999997533110 00 122
Q ss_pred cceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 50 GSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 50 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
...+..+..++.++.++||||++++...+...+..+|++++|+|+..+..- .....+...... ...++++++||+|
T Consensus 93 d~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~---~~~~iivvvNK~D 168 (632)
T PRK05506 93 DVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL---GIRHVVLAVNKMD 168 (632)
T ss_pred eeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh---CCCeEEEEEEecc
Confidence 222334555677999999999999877777778999999999999765321 111111111111 1257899999999
Q ss_pred CCCCCC--HHHHHhhcCc--CccCCCceEEEEeecccCCCHHH
Q 030113 130 LKDAMT--PAEITDALSL--HSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 130 l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+.+... ..++...+.. ........+++++||++|.|+++
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 864221 1222222211 01122356799999999999874
No 247
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.78 E-value=1e-20 Score=121.32 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
++++|+|.-|+|||+++.+++...+.. +..+++..... ..+ ..+++++||+.||+++..+..-+++.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 899999999999999999998888765 55677754421 222 347889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCC---CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQH---SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~---~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
||++....|+....|..........++ .|+++..||+|......... ...+......+.-...+++|++.+.+++|
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~-~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEA-TRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhh-HHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999998876544443 88899999999755432221 11111111123344699999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+-+.+++.+.-+
T Consensus 185 a~r~lVe~~lvn 196 (229)
T KOG4423|consen 185 AQRELVEKILVN 196 (229)
T ss_pred HHHHHHHHHHhh
Confidence 999999987644
No 248
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=6.1e-18 Score=117.41 Aligned_cols=154 Identities=22% Similarity=0.275 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcC-eEEEEEEcCCC-------hhhHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKN-IRFEAWDVGGQ-------ERLRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~D~~g~-------~~~~~~~~~~~~~~d 86 (183)
..+.++|.||+|||||++++...... ...+|...+...+.+++ .++.+-|.||. .........+++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 56889999999999999999775421 11133333333555544 34899999993 223445566788999
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGH-EDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
.++||+|++.+ +.++.+...+.++-.+ ....+.|.++|+||+|+.+.. ......+.... .+..++++||+.
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~l---q~~~V~pvsA~~ 351 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRL---QNPHVVPVSAKS 351 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHc---CCCcEEEeeecc
Confidence 99999999988 7777777766666433 233568999999999985322 22212222111 122599999999
Q ss_pred CCCHHHHHHHHHHh
Q 030113 163 GDGLVDGLEWISQR 176 (183)
Q Consensus 163 ~~gi~~~~~~i~~~ 176 (183)
++|+.++++.+.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999887653
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.77 E-value=1.2e-17 Score=127.12 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=80.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc--CCccc-----------------------ccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL--GEVVT-----------------------THPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++++. +.... ...++......+.+++.++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4678999999999999999999852 11100 0112223345567788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|+.++......++..+|++++|+|+++.-. .....++ ..... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~-~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLM-EVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHH-HHHHh---cCCCEEEEEECcccc
Confidence 999988877788999999999999987521 1222333 33322 468999999999985
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.3e-17 Score=115.04 Aligned_cols=155 Identities=22% Similarity=0.201 Sum_probs=108.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEcCeEEEEEEcCCCh-------hhHhhHHhhc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYKNIRFEAWDVGGQE-------RLRTSWATYY 82 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~ 82 (183)
.+.-..+++++|.|++|||||++++.+... .. ..+|.......+.+++.++|++|+||.- .......+..
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 344568999999999999999999987653 11 2355556666788999999999999821 1234566778
Q ss_pred cCCCEEEEEEeCCCccc-HHHHHHHHHHH----------------------------------------hC---------
Q 030113 83 RGTHAVIVVIDSTDRAR-ISIMKDELFRL----------------------------------------LG--------- 112 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~--------- 112 (183)
++||++++|+|+..+.. .+.+...+... +.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986532 22222211111 00
Q ss_pred ---------------CCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 113 ---------------HEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 113 ---------------~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+|.++|.||.|+........+.+.. ..+.+||..+.|++++.+.|.+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 0111248999999999987633332222222 499999999999999999998876
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.77 E-value=5.7e-17 Score=127.77 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+-.+|+|+|++++|||||+++|+...-. ....|.......+.+++.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 345679999999999999999999632110 01223344556677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++...+..+++.+|++++|+|+.+....... ..+... .. .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 9888888999999999999999876443322 223222 21 3589999999999874
No 252
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=2.4e-18 Score=127.71 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=118.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee---EEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV---EELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+.+||+++|+.|+|||||+-.++..++++..|..-..+ ..+.-..+...++|++..+.........++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4688999999999999999999999998876443221110 1222245668999998777766777778999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCC--CCCeEEEEEeCCCCCCCCCH--H-HHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDL--QHSVVLIFANKQDLKDAMTP--A-EITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~vilv~nK~Dl~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+|+.+++.+++.+...|.+.+..... .+.|+|+|+||+|....... + .+....... ..--.+++|||++-.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhhh
Confidence 99999999999999888888765432 46999999999998654332 1 112111110 0011389999999999
Q ss_pred HHHHHHHHHHhhh
Q 030113 166 LVDGLEWISQRVT 178 (183)
Q Consensus 166 i~~~~~~i~~~~~ 178 (183)
+.++|....+.+.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999988766554
No 253
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.7e-17 Score=122.55 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=115.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCc------------------ccccCcccceeEEEEEcC---eEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEV------------------VTTHPTVGSNVEELVYKN---IRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (183)
.+-.++.|+-+...|||||..+++...- .+...|+......+.+.. ..+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4557899999999999999999853211 012234444444555555 8899999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
|.......+.-|+++++|+|++.+-.=......+..+ + .+..+|.|+||+|+..... +.+...+... +.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHHH-hcCCcc
Confidence 9999999999999999999999764333333444433 2 3577999999999976543 3333333221 234455
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++.+||++|.|+++++++|++.++.-
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 799999999999999999999998754
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.1e-17 Score=122.07 Aligned_cols=155 Identities=23% Similarity=0.218 Sum_probs=116.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-----cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-----TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+..-|.|+|+...|||||+.++-+.... .....+|.....+. ++..+.|.|||||..|..+.....+-+|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 46678899999999999999999654432 22334444444444 6789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC----CCceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK----NHDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~~~~~g 165 (183)
+|+.+.|+ +.....+.+.+....+.|+++.+||+|.... .+..+...+...... ..+++++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999887 3333334445555578999999999997643 455555555433222 3688899999999999
Q ss_pred HHHHHHHHHHh
Q 030113 166 LVDGLEWISQR 176 (183)
Q Consensus 166 i~~~~~~i~~~ 176 (183)
++.|-+.+.-.
T Consensus 304 l~~L~eaill~ 314 (683)
T KOG1145|consen 304 LDLLEEAILLL 314 (683)
T ss_pred hHHHHHHHHHH
Confidence 99999987654
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.76 E-value=2.6e-17 Score=129.69 Aligned_cols=114 Identities=19% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-----c---c-------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-----V---V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-----~---~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|++++|||||+++|+... . . ....|.......+.+++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3466789999999999999999996421 0 0 11234445556677789999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++...+...++.+|++++|+|+.++-.-.. ...+..... .++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 988889999999999999999987632221 122222222 3588999999999874
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=3.3e-17 Score=112.07 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc--c-----------------ccCcccceeEEEEEc----------CeEEEEEEcC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV--T-----------------THPTVGSNVEELVYK----------NIRFEAWDVG 69 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~--~-----------------~~~~~~~~~~~~~~~----------~~~~~~~D~~ 69 (183)
+|+++|+.++|||||+.+|+...-. . ...|+......+.+. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999643210 0 011222222222232 6789999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|+.++......+++.+|++++|+|++++.+... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998754433 222333322 357899999999975
No 257
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=1.2e-16 Score=99.31 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRGT 85 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 85 (183)
+|+|+|.+|+|||||+|+|++..... ...|....+..+.+....+.++||||-.. ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999864432 22344444556667889999999999422 111233344889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
|++++|+|++++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877321 1122222222 1 56999999998
No 258
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.2e-17 Score=116.69 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=102.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++++++|+..+|||||+-+|+..- .. +..-|+......+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4778999999999999999999885321 10 0112333444555556
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc--------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR--------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s--------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
...+.++|+||+.+|...+.....++|+.|+|+|+++.+- .......+.+.+. -..+|+++||+|+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~v 158 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDLV 158 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEccccc
Confidence 7889999999999999999999999999999999997741 1112223333322 25689999999997
Q ss_pred CCCC--HHH----HHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 132 DAMT--PAE----ITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 132 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+..+ .++ +...+........+++|+++|+..|+|+.+
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 6322 122 222222222233468899999999999743
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=9.9e-17 Score=108.51 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCChhh-------Hhh----HHhh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQERL-------RTS----WATY 81 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~----~~~~ 81 (183)
++|+++|.+|+|||||+|++++...... ..|..+........+..+.++||||-.+. ... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764322 34555556666678899999999994322 111 1222
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhcCcCccCCCc
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE--------ITDALSLHSIKNHD 152 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~ 152 (183)
..++|++++|+++.+... ......++...+... ...++++++|+.|........+ +...+... +
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-----~ 153 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-----G 153 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-----C
Confidence 457899999999876321 223334444443321 2257899999999654332222 22222211 1
Q ss_pred eEEEEe-----ecccCCCHHHHHHHHHHhhhcc
Q 030113 153 WHIQAC-----SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 153 ~~~~~~-----S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.+++.. ++.++.+++++++.+-+.+.++
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 123232 2567888999999999988864
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.74 E-value=7.9e-17 Score=126.91 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc--CCc------c-------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL--GEV------V-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~--~~~------~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+-.+|+|+|++++|||||+++|+. +.. . ....|.......+.+++.++.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567999999999999999999963 110 0 11233334445577788999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++.......+..+|++++|+|+...-.... ...+..... .++|.++++||+|+.+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 988888888999999999999986632222 222233222 3578999999999864
No 261
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=9.1e-17 Score=115.17 Aligned_cols=156 Identities=27% Similarity=0.298 Sum_probs=97.8
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcc-------cccCcccceeEEE-------------------E-EcCeEEEEEEcCCC-
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVV-------TTHPTVGSNVEEL-------------------V-YKNIRFEAWDVGGQ- 71 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~-------~~~~~~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 71 (183)
|+++|.+++|||||++++.+.... ...++.+...... . .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999887632 2233444333211 0 13368999999996
Q ss_pred ---hhhHh---hHHhhccCCCEEEEEEeCCC---------------cc-cHHHHHHHHHH--------------------
Q 030113 72 ---ERLRT---SWATYYRGTHAVIVVIDSTD---------------RA-RISIMKDELFR-------------------- 109 (183)
Q Consensus 72 ---~~~~~---~~~~~~~~~d~ii~v~d~~~---------------~~-s~~~~~~~~~~-------------------- 109 (183)
++... .....++++|++++|+|++. +. .+..+...+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 34446899999999999973 10 11111111000
Q ss_pred ------------------------HhCC-C--------------------CCCCCeEEEEEeCCCCCCCCCHHHHHhhcC
Q 030113 110 ------------------------LLGH-E--------------------DLQHSVVLIFANKQDLKDAMTPAEITDALS 144 (183)
Q Consensus 110 ------------------------~~~~-~--------------------~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~ 144 (183)
.+.. . ....+|+++++||.|+... .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0000 0 1234799999999997533 22222222
Q ss_pred cCccCCCceEEEEeecccCCCHHHHHH-HHHHhhhccC
Q 030113 145 LHSIKNHDWHIQACSALTGDGLVDGLE-WISQRVTGKA 181 (183)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~~~~-~i~~~~~~~~ 181 (183)
. .....+++++||+.+.+++++.+ .+.+.+++.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 1 12345799999999999999998 6999987754
No 262
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.6e-16 Score=115.90 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=115.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc------------------cccCcccceeEEEEE-----cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------------TTHPTVGSNVEELVY-----KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (183)
++-.+..|+-+-..|||||..++....-. +...|+..+...+.+ +...+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34467899999999999999999642210 122344444444444 3488999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc-CcCccCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL-SLHSIKN 150 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~ 150 (183)
.+|.......+..|.++++|+|++.+-.=..+.+.+..+- .+..++.|+||+||..... ..+.++. ... ..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp-ervk~eIe~~i--Gi 158 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP-ERVKQEIEDII--GI 158 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH-HHHHHHHHHHh--CC
Confidence 9999988888999999999999998754455566666653 3577999999999976533 3333222 211 12
Q ss_pred CceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 151 HDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.....+.+||++|.||+++++.|++.++.-.
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 2334899999999999999999999987644
No 263
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.2e-16 Score=116.75 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=108.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCCChh-hH--------hhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGGQER-LR--------TSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g~~~-~~--------~~~~~~ 81 (183)
+..++|+|+|+||+|||||+|+|...+....++..|++. ..++.++.++.+.||+|..+ -. ..-...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456999999999999999999999998776666656443 45667899999999999544 11 112344
Q ss_pred ccCCCEEEEEEeC--CCcccHHHHHHHHHHHhC-----CCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCce
Q 030113 82 YRGTHAVIVVIDS--TDRARISIMKDELFRLLG-----HEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDW 153 (183)
Q Consensus 82 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~-----~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 153 (183)
++.+|.+++|+|+ ++.++-..+...+...-. .......|++++.||.|+..... .......+... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 6789999999999 333333333333333321 11223478999999999875521 11100111111 112233
Q ss_pred E-EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 154 H-IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 154 ~-~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+ ..++|+++++|++.+.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 3 5559999999999999998886643
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=8.2e-16 Score=116.84 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=73.0
Q ss_pred eEEEEEEcCCChh-----hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 61 IRFEAWDVGGQER-----LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 61 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
.++.++||||-.. +...+...+.++|++++|+|+...-+..+ ..+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4788999999533 33345567899999999999987533222 22223332211 1259999999999864222
Q ss_pred --HHHHHhhcCcC--ccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 136 --PAEITDALSLH--SIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
...+.+..... ........+|++||++|.|++++++.|.++
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33333332211 112234469999999999999999998873
No 265
>PRK12740 elongation factor G; Reviewed
Probab=99.71 E-value=7.3e-16 Score=121.53 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=78.7
Q ss_pred EcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhh
Q 030113 23 VGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATY 81 (183)
Q Consensus 23 iG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (183)
+|++++|||||+++|+...-. ....|++.....+.+.+..+.+|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999432110 11234455556677889999999999999988888889
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+|++++|+|+++....... ..+..... .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9999999999999887544332 22333222 35899999999998643
No 266
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=3e-16 Score=110.28 Aligned_cols=155 Identities=24% Similarity=0.239 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC-------cccccCcccceeEEEEEcCeEEEEEEcCCC-------hhhHhhHHhhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE-------VVTTHPTVGSNVEELVYKNIRFEAWDVGGQ-------ERLRTSWATYYR 83 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~~~~~~~~~ 83 (183)
--|.++|.|++|||||++++.... |....|..|+-.. ...-.+.+-|.||- .........+++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 457899999999999999997644 2333344443222 34567999999982 223445566788
Q ss_pred CCCEEEEEEeCCCccc------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhcCcCccCCCceEEE
Q 030113 84 GTHAVIVVIDSTDRAR------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD-AMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
.+.+++.|+|++..+. +..+...+..+- ....++|.++|.||+|+.. .+..+++.+.+.... .....++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--~~~~~~~ 312 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--GWEVFYL 312 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--CCCccee
Confidence 9999999999985542 333334444432 2335799999999999543 333444444443221 1111233
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+|+.+++|++++...+.+.+.+.
T Consensus 313 -ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 -ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred -eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999998887765
No 267
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.70 E-value=1.1e-15 Score=111.07 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=100.3
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+++.....
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 55666667777888999999999999999999999999999999999974 46788888899998877778
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHHHHHhhcC----cCcc--CCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDA-----------------MTPAEITDALS----LHSI--KNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~----~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.|+++++||.|+..+ .......+... .... ....+..+.++|.+..++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999997421 11111111111 1110 12456678889999999999999887
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 76654
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.70 E-value=1.6e-16 Score=95.72 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCC----hhhHhhHHhhccCCCEEEEEEeC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ----ERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
|++++|..|+|||||.+++.+.... +..|..+.+. +. -.+||||. ..+.........++|.+++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-----d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-----DK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeecc-----Cc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7899999999999999999776532 2222222221 10 13699983 33333344456889999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++++. +...+ .....+|+|-+++|.|+.++.+.....+++.+.. .-++|.+|+.++.|++++++.+.
T Consensus 75 nd~~s~--f~p~f------~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGF------LDIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCccc------ccccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 988642 11111 1223467999999999997666666666665443 33699999999999999999886
Q ss_pred H
Q 030113 175 Q 175 (183)
Q Consensus 175 ~ 175 (183)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 5
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.69 E-value=5.8e-16 Score=111.60 Aligned_cols=133 Identities=18% Similarity=0.281 Sum_probs=102.0
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|.++. .++.+....+..+++.....
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 56666667777889999999999999999999999999999999999974 56788888888888877777
Q ss_pred CCeEEEEEeCCCCCCC------------------CCHHHHHhhcCc-----CccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDA------------------MTPAEITDALSL-----HSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.|+++++||.|+..+ ....+..+.... .......+..+.++|.+..+++.+|+.+.
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 8999999999996421 111222211111 11113456678899999999999999998
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+..+
T Consensus 308 ~~i~~~ 313 (317)
T cd00066 308 DIILQN 313 (317)
T ss_pred HHHHHH
Confidence 877654
No 270
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.69 E-value=2e-15 Score=111.39 Aligned_cols=78 Identities=29% Similarity=0.385 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---c----cCcccceeEEEE--------------------EcCeEEEEEEcCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---T----HPTVGSNVEELV--------------------YKNIRFEAWDVGG 70 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~----~~~~~~~~~~~~--------------------~~~~~~~~~D~~g 70 (183)
++|+++|.||+|||||++++.+..... . .++.|....... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999998776432 1 233332221000 1236789999999
Q ss_pred C----hh---hHhhHHhhccCCCEEEEEEeCC
Q 030113 71 Q----ER---LRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 71 ~----~~---~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
- .+ ........++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 22 2234444589999999999997
No 271
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=8.3e-16 Score=105.25 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=108.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc---Cccc-ceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH---PTVG-SNVEELVYKNIRFEAWDVGGQER-------LRTSWATYY 82 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (183)
.+.+++++++|.+|+||||++|++.+++..+.. .... .++....+..-.+.+||+||-.+ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 568899999999999999999999976544322 1111 22233445567899999998433 677788889
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC---------CHHHHHh-------hcCcC
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM---------TPAEITD-------ALSLH 146 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~---------~~~~~~~-------~~~~~ 146 (183)
.+.|.+++++++.++.- .--...+..+.... .+.++++++|.+|...+. ......+ .....
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999987741 11122333333221 348899999999975432 0011111 11111
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
. ..--|++..|...+.|++++...+++.+...
T Consensus 193 ~--q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 F--QEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred H--hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1 1233688888999999999999999988654
No 272
>PRK13768 GTPase; Provisional
Probab=99.66 E-value=5.9e-16 Score=108.25 Aligned_cols=117 Identities=21% Similarity=0.100 Sum_probs=73.8
Q ss_pred eEEEEEEcCCChhh---HhhHHhh---ccC--CCEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 IRFEAWDVGGQERL---RTSWATY---YRG--THAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ~~~~~~D~~g~~~~---~~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
..+.+||+||+.+. ...+..+ +.. .+++++|+|++......... .++...... ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 37999999997663 2233222 233 89999999997654333222 222221110 01368999999999987
Q ss_pred CCCCHHHHHhhcCc-------------------------CccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 132 DAMTPAEITDALSL-------------------------HSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.....+....+.. ........+++++|+++++|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 66544443333221 000122357999999999999999999988764
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=3.3e-15 Score=105.67 Aligned_cols=140 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-----------cCcccceeEE--EEEcC--eEEEEEEcCCChhh-----
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----------HPTVGSNVEE--LVYKN--IRFEAWDVGGQERL----- 74 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----------~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~----- 74 (183)
.-.++|+++|.+|+|||||+|++++..+... .++....... +..++ .++.+|||||-.+.
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3468999999999999999999988775432 2233332222 22333 67999999993221
Q ss_pred -------------Hhh--------HHhhcc--CCCEEEEEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 75 -------------RTS--------WATYYR--GTHAVIVVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 75 -------------~~~--------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
... ....+. .+|+++|+++.+.. .+... ...+..+ .. .+|+++|+||+|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~~----~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-SK----RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-hc----cCCEEEEEECCCc
Confidence 000 001222 36888888887742 12222 2222222 21 4899999999998
Q ss_pred CCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 131 KDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..........+.... .....++++|.....
T Consensus 156 l~~~e~~~~k~~i~~-~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTPEELKEFKQRIME-DIEEHNIKIYKFPED 185 (276)
T ss_pred CCHHHHHHHHHHHHH-HHHHcCCceECCCCC
Confidence 653333333332221 112334556666543
No 274
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.4e-16 Score=107.74 Aligned_cols=164 Identities=18% Similarity=0.086 Sum_probs=113.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc------Cccccee--------------EEEEE------------cCeE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH------PTVGSNV--------------EELVY------------KNIR 62 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~------~~~~~~~--------------~~~~~------------~~~~ 62 (183)
+..++|.++|+...|||||..+|.+-.....+ .++..-| ..+.. --.+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 67899999999999999999999764432111 0000000 00000 0257
Q ss_pred EEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh
Q 030113 63 FEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA 142 (183)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~ 142 (183)
+.|+|.|||+-....+.+...-.|++++|+++++++..-.....+..+- .. .-+.++++.||+|+...+...+--++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Ii--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-II--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hh--ccceEEEEecccceecHHHHHHHHHH
Confidence 8999999999998888887788899999999999887655655555442 11 23679999999999765433221111
Q ss_pred cCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 143 LSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 143 ~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
... +..-..+.|++++||..+.||+.+++.|.+.+....
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 111 111125779999999999999999999999887543
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.64 E-value=5.1e-16 Score=113.84 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=113.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--cc-ccCcccceeEEEEEcCeEEEEEEcCCChhh-----Hh-hHH--hhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--VT-THPTVGSNVEELVYKNIRFEAWDVGGQERL-----RT-SWA--TYY 82 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~-~~~--~~~ 82 (183)
..+...++|+|.|++|||||++.+..... .. ..+|.+.-...+.++..+++++||||.-+. .. .+. ..+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 35678999999999999999999876543 22 335566666778888899999999993221 11 111 111
Q ss_pred c-CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 83 R-GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 83 ~-~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
. --.+++|++|++.-| |.......+..+... ..+.|+|+|+||+|+...+...+-.+.+-.......+++++++|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 1 125899999999665 566666666666433 25799999999999876655444443333333344568899999
Q ss_pred cccCCCHHHHHHHHHHhhhc
Q 030113 160 ALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~ 179 (183)
+.+.+|+..+....++.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999998877776666544
No 276
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.63 E-value=2.4e-15 Score=103.97 Aligned_cols=116 Identities=17% Similarity=0.075 Sum_probs=60.8
Q ss_pred EEEEEEcCCChhhHhhHHhhc--------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 62 RFEAWDVGGQERLRTSWATYY--------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.+.++|||||.++...+...- ...-++++++|+....+-......+..........+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988765554332 334688999998755442222222111111111136999999999999762
Q ss_pred CC--------------------HHHHHhhcCcCccCCCce-EEEEeecccCCCHHHHHHHHHHhh
Q 030113 134 MT--------------------PAEITDALSLHSIKNHDW-HIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 134 ~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.. ...+...+.......... +++++|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 111222222211122333 799999999999999999887765
No 277
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=6.1e-15 Score=105.97 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE- 138 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~- 138 (183)
+..+.++||+|....... ....+|.+++|.++..+..+..... ..+. ..-++|+||+|+.+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHHH
Confidence 568999999996533322 3567999999987544433333221 1211 12389999999875443322
Q ss_pred ---HHhhcCcCccC--CCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 139 ---ITDALSLHSIK--NHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 139 ---~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+...+...... ....+++.+|++++.|++++++.+.+++...
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 23333221101 1235799999999999999999999987643
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.61 E-value=1.1e-14 Score=100.31 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=85.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
......|+++|++|+|||||++.+.+..... .....|. +........++.++||||.. .......+.+|.+++|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 3556889999999999999999997653211 1122221 11223367889999999864 22334468899999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEeCCCCCCCCC-HHHHHhhcCcCcc--CCCceEEEEeecccC
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVV-LIFANKQDLKDAMT-PAEITDALSLHSI--KNHDWHIQACSALTG 163 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-ilv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~S~~~~ 163 (183)
|++.+..... ..+...+.. .+.|. ++|+||+|+.+... ..++.+.+..... .....+++.+||++.
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 9986543221 222222222 24564 55999999864322 2233333322111 124568999999886
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=2.3e-14 Score=115.57 Aligned_cols=141 Identities=19% Similarity=0.162 Sum_probs=90.9
Q ss_pred CCHHHHHHHhccCCccc-----ccCcccceeEEEEE----------------cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 28 AGKTTTLYKLHLGEVVT-----THPTVGSNVEELVY----------------KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 28 ~GKStl~~~l~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
++||||+.++-+..... ..+.+|........ +...+.+|||||++.+.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999997655432 22333433222221 1123899999999999888888888999
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhh-------
Q 030113 87 AVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--------------PAEITDA------- 142 (183)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--------------~~~~~~~------- 142 (183)
++++|+|+++. .++..+. .+.. .++|+++++||+|+..... .+...+.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999863 3332221 1111 3589999999999864211 0111111
Q ss_pred ----cCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 143 ----LSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 143 ----~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
+..... ....++++++||++|+|++++++++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 111100 1246789999999999999999988644
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-14 Score=104.52 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cccc-------------cCcccc----eeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VVTT-------------HPTVGS----NVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~~~-------------~~~~~~----~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.-.+|+||-+...|||||+..++... |... ...-|+ ....+.|++.++.++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34689999999999999999997543 1110 112222 2344677899999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh------hcCcCccCC
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD------ALSLHSIKN 150 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~ 150 (183)
.....+.-.|++++++|+.+.. +-..+-.+...+.. +.+.|+|+||+|........-+.+ .++... ..
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d-eQ 157 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD-EQ 157 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh-hh
Confidence 9999999999999999998753 22333344444443 466789999999876543322222 222111 23
Q ss_pred CceEEEEeecccC----------CCHHHHHHHHHHhhhcc
Q 030113 151 HDWHIQACSALTG----------DGLVDGLEWISQRVTGK 180 (183)
Q Consensus 151 ~~~~~~~~S~~~~----------~gi~~~~~~i~~~~~~~ 180 (183)
.+.|++..|+..| .++.-+|+.|+++++.-
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 6778999999876 56889999999988753
No 281
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.58 E-value=7.1e-15 Score=100.57 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=99.4
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcc-------------c--ceeE-EEEE----------------
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTV-------------G--SNVE-ELVY---------------- 58 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~-------------~--~~~~-~~~~---------------- 58 (183)
....+++.-|+|+|..|+|||||+.+|...-.....+.. + +.+. .+.+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345567788999999999999999998542211111000 0 0000 0000
Q ss_pred ---------------------cCeEEEEEEcCCChhhH------hhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHH
Q 030113 59 ---------------------KNIRFEAWDVGGQERLR------TSWATYYR--GTHAVIVVIDSTDRARISIMKDELFR 109 (183)
Q Consensus 59 ---------------------~~~~~~~~D~~g~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~ 109 (183)
......++|||||-... ..+-..+. ..-+++|++|.....+-.........
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 13468999999975421 11111122 23688899998654443333333333
Q ss_pred HhCCCCCCCCeEEEEEeCCCCCCCCCHHH-------HHhhcCcCcc----------------CCCceEEEEeecccCCCH
Q 030113 110 LLGHEDLQHSVVLIFANKQDLKDAMTPAE-------ITDALSLHSI----------------KNHDWHIQACSALTGDGL 166 (183)
Q Consensus 110 ~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-------~~~~~~~~~~----------------~~~~~~~~~~S~~~~~gi 166 (183)
..+.......|.+++.||.|+.+..-..+ +.+.+..... .+...+.+.+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 33333335799999999999987533221 1122211000 024667999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030113 167 VDGLEWISQRVTG 179 (183)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (183)
+++|..+.+.+.+
T Consensus 253 ddf~~av~~~vdE 265 (366)
T KOG1532|consen 253 DDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.58 E-value=5.2e-15 Score=117.15 Aligned_cols=113 Identities=20% Similarity=0.123 Sum_probs=79.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC---------------Cccc----ccCccccee----EEEEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG---------------EVVT----THPTVGSNV----EELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~---------------~~~~----~~~~~~~~~----~~~~~~~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+++++.. .+.. ...|+.... ..+.+.+.++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999642 1111 112333222 124456789999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++......+++.+|++++|+|+.+.-.... ...+..... .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888899999999999999987532221 122222222 3467889999999753
No 283
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.57 E-value=8.3e-14 Score=99.72 Aligned_cols=134 Identities=20% Similarity=0.328 Sum_probs=101.5
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..++..+.++|++||...+..|..++.+++++|+|+++++. +.+.+....+..+.++...
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 477788888889999999999999999999999999999999999999855 2455666788888888888
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhcC-----cCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKDA-----------------MTPAEITDALS-----LHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
.+.++|++.||.|+..+ ...++...... ......+......+.|.+..+|+.+|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 88999999999998632 01111111111 111111445567778999999999999988
Q ss_pred Hhhhcc
Q 030113 175 QRVTGK 180 (183)
Q Consensus 175 ~~~~~~ 180 (183)
+.+...
T Consensus 341 d~Ii~~ 346 (354)
T KOG0082|consen 341 DTIIQN 346 (354)
T ss_pred HHHHHH
Confidence 877653
No 284
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=5.9e-14 Score=99.10 Aligned_cols=160 Identities=19% Similarity=0.144 Sum_probs=102.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----ccc--cc----CcccceeEEEEE---------cCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----VVT--TH----PTVGSNVEELVY---------KNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~~~--~~----~~~~~~~~~~~~---------~~~~~~~~D~~g~~~~ 74 (183)
+...+++.++|+..+|||||.+++..-. |.. .+ .|.+.-+-.+.. +..++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3455999999999999999999995421 111 11 111111111211 3568899999999998
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc------Cc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL------HS 147 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~------~~ 147 (183)
-+.+.....-.|..++|+|+..+..- ..-...+-.++ -...++|+||.|+..+.++..-.+.... ..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 88777777778999999999865321 11112222222 2456889999998766443322221111 11
Q ss_pred c-CCCceEEEEeecccC----CCHHHHHHHHHHhhhc
Q 030113 148 I-KNHDWHIQACSALTG----DGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~-~~~~~~~~~~S~~~~----~gi~~~~~~i~~~~~~ 179 (183)
. ...+.|+.++|+.+| +++.|+.+.+-+++.+
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 1 124689999999999 8888888888777654
No 285
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=100.20 Aligned_cols=111 Identities=24% Similarity=0.305 Sum_probs=85.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc--CCcc-----------------------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL--GEVV-----------------------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~--~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
++...+||-+|.+|||||..+++- +... +...++.....++.|++..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999998841 1110 112344466678889999999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
|++|...+..-+.-+|.++.|+|+..+ .+.-...+..+... ++.|++-++||+|..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccc
Confidence 999988887778889999999999866 44444555565544 689999999999975
No 286
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.9e-13 Score=95.19 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=75.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhH----------hhHH
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLR----------TSWA 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~ 79 (183)
....++|+++|.+|+|||||+|++.+....... .|..........++.++.+|||||-.... ....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 356799999999999999999999987653322 23333333444567899999999944331 1122
Q ss_pred hhcc--CCCEEEEEEeCCCcc-cHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 80 TYYR--GTHAVIVVIDSTDRA-RIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.+++ ..|++++|..++... ... .+...+...+... ...++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 3343 568888887665321 122 2334444443321 23579999999997643
No 287
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=100.24 Aligned_cols=154 Identities=18% Similarity=0.082 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
.|+..|+--.|||||+..+.+..... ...|+...+.....++..+.|+|+||++++-..+...+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46788999999999999998866432 335555656656667779999999999999999888899999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
|+++. +.........++... .....++|+||+|..++....+..+....... ....+++.+|+++|.||+++.+.
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99654 222222222222222 22456999999999876544444443322221 55667999999999999999999
Q ss_pred HHHhh
Q 030113 173 ISQRV 177 (183)
Q Consensus 173 i~~~~ 177 (183)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99877
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.5e-13 Score=96.09 Aligned_cols=147 Identities=22% Similarity=0.229 Sum_probs=100.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc------------------------------------cccCcccceeEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------------------------------TTHPTVGSNVEELVY 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~ 58 (183)
+..++++-+|...-|||||+-+|+.+... +...|+.+.+.-+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 56689999999999999999999643211 112344455555666
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHH--HHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKD--ELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~ 136 (183)
+..+|.+-|||||++|.+.+......||++|+++|+...- ++..+. .+..++.. ..+++.+||+||.+..+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCHH
Confidence 7899999999999999999999999999999999996541 222222 22233322 568999999999875432
Q ss_pred --HHHHhhcCc--CccCCCceEEEEeecccCCCHH
Q 030113 137 --AEITDALSL--HSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 137 --~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
.++...+.. .........++++||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 122211111 1112234479999999999974
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=6.7e-14 Score=95.66 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHH----hh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWA----TY 81 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~----~~ 81 (183)
++|+++|.+|+||||++|.+++...... +.|..+........+..+.++||||-.+ ....+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998875432 2355566666778899999999999221 111122 22
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHh-----hcCcCccCCCceEE
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITD-----ALSLHSIKNHDWHI 155 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~ 155 (183)
....|++++|++...... -.....++..++... ....++|+.|..|........+..+ .+.....+. +-+|
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCEE
Confidence 356799999999973321 223334555555432 2245888888888655443222211 111111111 2235
Q ss_pred EEeecc------cCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSAL------TGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~------~~~gi~~~~~~i~~~~~~~ 180 (183)
...+.+ +...+.++++.+-+.+.++
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 444444 3455788888777766554
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.53 E-value=4.1e-13 Score=90.70 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=63.0
Q ss_pred eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHH
Q 030113 61 IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAE 138 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~ 138 (183)
....++++.|..-.....+. -+|.++.|+|+.+..+.. ......+. .--++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~---~~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIP---RKGGPGIT------RSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhh---hhhHhHhh------hccEEEEEhhhccccccccHHH
Confidence 45667777773211111111 157899999998764421 11111111 112899999999753 23333
Q ss_pred HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 139 ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+.+.+... +...+++++|+++|+|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33333322 34678999999999999999999987653
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.53 E-value=3.4e-14 Score=114.16 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=80.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc------------c-------ccCcccceeEEEEE----------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV------------T-------THPTVGSNVEELVY---------------- 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~------------~-------~~~~~~~~~~~~~~---------------- 58 (183)
+.+-.+|+|+|+.++|||||+++++...-. . ...|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 456689999999999999999999643310 0 01122222222222
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.+..+.++||||+.+|.......++.+|++|+|+|+.++-... ....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHH----CCCCEEEEEECCccc
Confidence 2567899999999999999999999999999999998764322 2233333332 468999999999986
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.1e-13 Score=101.87 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=101.3
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELV 57 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~ 57 (183)
..++..+.++++|+..+|||||+.+++..--. ..+-|..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34556799999999999999999888531100 01112222233344
Q ss_pred EcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHH------HHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI------MKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
-....+.++|+||+..|...+......+|+.++|+|++..+ |+. .......++... .-..+++++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc--CcceEEEEeeccccc
Confidence 46788999999999999998888899999999999998542 221 112222222221 135689999999987
Q ss_pred CCCC--HHH----HHhhc-CcCccCCCceEEEEeecccCCCHH
Q 030113 132 DAMT--PAE----ITDAL-SLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 132 ~~~~--~~~----~~~~~-~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
...+ .++ +...+ ....+....+.|++||+..|+|+-
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 6432 222 33333 334445567789999999999963
No 293
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.7e-13 Score=92.36 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC----CcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh---HHhhccCCCEEEE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG----EVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS---WATYYRGTHAVIV 90 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii~ 90 (183)
.+|+++|...+||||+......+ +..-..+|.......+...-+++++||.|||-.+... ....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 66999999999999997655432 2111223444444444445689999999998776432 3456889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHh--CCCCCCCCeEEEEEeCCCCCCC-CCH-------HHHHhhcCcCccCCCceEEEEeec
Q 030113 91 VIDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKDA-MTP-------AEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~vilv~nK~Dl~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|+|+.+. +.+....+.... .+.-.+++.+-+.+.|.|...+ ... +...+.+.......-.+.++-+|.
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999765 222222222222 2344578999999999995433 221 122233333333445677888888
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
.+.. |-|+|..+++.+.++.|
T Consensus 186 yDHS-IfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cchH-HHHHHHHHHHHHhhhch
Confidence 8876 99999999999998876
No 294
>PTZ00416 elongation factor 2; Provisional
Probab=99.51 E-value=8.3e-14 Score=111.77 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-------------------ccCcccceeEEEEEc----------CeEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------------------THPTVGSNVEELVYK----------NIRFE 64 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~----------~~~~~ 64 (183)
..+..+|+|+|+.++|||||+++|+...-.. ...|+......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 3455799999999999999999997532110 001111111122332 56799
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
++||||+.++.......++.+|++++|+|+.++-... ....|..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999988899999999999999998763222 2233333332 358999999999986
No 295
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=4.1e-14 Score=108.21 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=106.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-----cccCcccceeEEEE----------------EcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-----TTHPTVGSNVEELV----------------YKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (183)
-+.+-+||+|+..+|||-|+..+-+.+.. .....+|.++.... ++--.+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 36688999999999999999998664432 22344444443322 2234678999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcc---cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC------C---------
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM------T--------- 135 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~------~--------- 135 (183)
|..+.......||.+|+|+|+..+- +...+ +....++.|+||..||+|..... .
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi--------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI--------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH--------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 9999999999999999999998652 22221 11122579999999999954210 0
Q ss_pred ---HHHHHhh-------cCcCc------cC----CCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 136 ---PAEITDA-------LSLHS------IK----NHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 136 ---~~~~~~~-------~~~~~------~~----~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..++... ++... .+ ...+.++++||..|+||..|+-+|++..+.
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 0111111 11000 01 245678999999999999999999886553
No 296
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=1.1e-12 Score=92.81 Aligned_cols=116 Identities=9% Similarity=0.115 Sum_probs=72.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-------hHHhhc-
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-------SWATYY- 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 82 (183)
...++|+++|.+|+||||++|+|++......+. +...........+.++.++||||..+... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 477999999999999999999999876432211 12222233445788999999999554321 122222
Q ss_pred -cCCCEEEEEEeCCC--cccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 83 -RGTHAVIVVIDSTD--RARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 83 -~~~d~ii~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...|+++||..++. .... ..+...+...+... ...+++++.|+.|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999965542 2212 22333344433221 2357899999999653
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.50 E-value=1.1e-13 Score=110.00 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=76.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-------------------ccCcccceeEEEEE----cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------------------THPTVGSNVEELVY----KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+.+++...-.. ...|+......+.+ ++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 455689999999999999999996422100 00122222222222 4678999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.++.......++.+|++++|+|+..+-.. .....+...... +.|.++++||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhh
Confidence 99988889999999999999999865322 122333332222 46779999999975
No 298
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-13 Score=92.12 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC----cccccCcccceeEEEEE-cCeEEEEEEcCCChhhHh-----hHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE----VVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRT-----SWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d 86 (183)
.-||+++|.+|+||||+-..+..+. ......|+++....+.+ +...+.+||++||+.+.. .....+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999976665433 22345666666666655 458899999999986432 3345678899
Q ss_pred EEEEEEeCCCccc---HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---CccCCCceEEEEeec
Q 030113 87 AVIVVIDSTDRAR---ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL---HSIKNHDWHIQACSA 160 (183)
Q Consensus 87 ~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S~ 160 (183)
++++|+|++..+- +......+..++++. +...+.+..+|+|+........+.+.... .......+.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986542 344555666666553 67888999999999765544433322211 111123456888886
Q ss_pred ccCCCHHHHHHHHHHhhhccC
Q 030113 161 LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.+. .+-.+|..++..+.+..
T Consensus 162 wDe-tl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYNLIPNV 181 (295)
T ss_pred hhH-HHHHHHHHHHHhhCCCh
Confidence 654 36677777777665543
No 299
>PTZ00258 GTP-binding protein; Provisional
Probab=99.48 E-value=2e-12 Score=94.83 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=57.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCCh-
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQE- 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~- 72 (183)
....++|+|+|.||+|||||+|++.+..... ...|...+...+.+. ..+++++|+||-.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3566899999999999999999997765321 223334444344332 3458999999932
Q ss_pred ------hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 ------RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23334455678899999999984
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.47 E-value=1.7e-13 Score=99.36 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=81.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--CcccccC--cccceeEE--EEE-cCeEEEEEEcCCChhhHhhHHhh-----c
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVVTTHP--TVGSNVEE--LVY-KNIRFEAWDVGGQERLRTSWATY-----Y 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~~~~~--~~~~~~~~--~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (183)
...++|+|+|.+|+|||||+|++.|- +.....+ ...++... +.. +.-++.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46789999999999999999999652 2111111 11222222 222 23579999999954333333333 4
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC--C-----C--CCH----HH----HHhhcCc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK--D-----A--MTP----AE----ITDALSL 145 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~--~-----~--~~~----~~----~~~~~~~ 145 (183)
...|.+|++.+ +.|....-++...+.. .++|+.+|-+|+|.. . + ... ++ +.+.+..
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 56798888775 4455555555555444 468999999999951 1 1 111 11 2222222
Q ss_pred CccCCCceEEEEeecccC--CCHHHHHHHHHHhhhcc
Q 030113 146 HSIKNHDWHIQACSALTG--DGLVDGLEWISQRVTGK 180 (183)
Q Consensus 146 ~~~~~~~~~~~~~S~~~~--~gi~~~~~~i~~~~~~~ 180 (183)
. .....++|-+|+.+- .++..+.+.+.+.+...
T Consensus 186 ~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 A--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred c--CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1 224457899998774 55888888888777654
No 301
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.45 E-value=3.5e-12 Score=89.60 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=109.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC----CE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT----HA 87 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~ 87 (183)
..-+|+|+|+.++|||||+.++.+.+......-.+..+..+.. +..++.+|-.-|+.-...+....+... -.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4478999999999999999999988755555544444433322 236788888888777666666555433 47
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhC-------------------------------------------------------
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLG------------------------------------------------------- 112 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~------------------------------------------------------- 112 (183)
+|++.|.++++.+-...+.|..++.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 8889999999543322222222211
Q ss_pred ------CCCCCCCeEEEEEeCCCCCC----C-CCHHH---HHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 113 ------HEDLQHSVVLIFANKQDLKD----A-MTPAE---ITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 113 ------~~~~~~~~vilv~nK~Dl~~----~-~~~~~---~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
...+.++|+++|++|+|... + +-..+ +.+..-+.++...+..++.+|+++..|++-+...|++.+.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 01123589999999999732 1 11111 1122223334456778999999999999999999999876
Q ss_pred cc
Q 030113 179 GK 180 (183)
Q Consensus 179 ~~ 180 (183)
.-
T Consensus 291 G~ 292 (473)
T KOG3905|consen 291 GF 292 (473)
T ss_pred Cc
Confidence 54
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.44 E-value=2.8e-12 Score=92.13 Aligned_cols=107 Identities=14% Similarity=0.023 Sum_probs=65.5
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHH
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI 139 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~ 139 (183)
+..+.++||+|-.... ......+|.++++.+.... +++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5789999999854222 2345668888888655433 2232222222 24677999999998754332211
Q ss_pred Hhh----cCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 140 TDA----LSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 140 ~~~----~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
... +..... .....+++++|++++.|++++++++.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 111 111000 112246999999999999999999988643
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.44 E-value=1.1e-12 Score=89.40 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=85.6
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcc--c-------cc--------CcccceeEEE-----------------
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T-------TH--------PTVGSNVEEL----------------- 56 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~-------~~--------~~~~~~~~~~----------------- 56 (183)
...+.....|+++|+.|+|||||+++++..... . .. ...+.....+
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHH
Confidence 345567889999999999999999998643100 0 00 0000010000
Q ss_pred ---EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 57 ---VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 57 ---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...+..+.+++|.|.-.... .+....+..+.|+|+.+.... ... ... ....|.++++||+|+.+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~-~~~------~~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLK-YPG------MFKEADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhh-hHh------HHhhCCEEEEEHHHcccc
Confidence 00134666777776211110 111223555667777654321 000 111 123567999999999753
Q ss_pred CC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 134 MT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.. ..+..+.+.. ..+..+++++|++++.|++++++++.+..
T Consensus 164 ~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 22 2233333322 12456899999999999999999998753
No 304
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.43 E-value=1.1e-12 Score=89.85 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=90.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC------Cc-----ccccC------------------cccceeEEEEE-------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG------EV-----VTTHP------------------TVGSNVEELVY------- 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~------~~-----~~~~~------------------~~~~~~~~~~~------- 58 (183)
.+.+.|.|.|+||+|||||++++... .. .++++ ..++.+..+..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 47899999999999999999988421 10 11111 12222232222
Q ss_pred -------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q 030113 59 -------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125 (183)
Q Consensus 59 -------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~ 125 (183)
.+..+.++.|.|--+... ....-+|.+++|.-+.-.+..+.+..-+.++.. ++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEE
Confidence 156889999987332222 224568999999999877666666666666532 8999
Q ss_pred eCCCCCCCC-CHHHHHhhcCcCc--cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 126 NKQDLKDAM-TPAEITDALSLHS--IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 126 nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
||.|..... ...++...+.... ......|++.+||.++.|++++++.|.++.
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999953221 1233344333221 223456899999999999999999988754
No 305
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.8e-12 Score=88.23 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=107.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-------Ccc------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-------EVV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|..+|+...|||||..++... ... ....|+......+......+..+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 367899999999999999998877421 110 1123444444555667899999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC-eEEEEEeCCCCCCCCCHH-----HHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-VVLIFANKQDLKDAMTPA-----EITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~ 148 (183)
-..+.....+.|+.|+|+.+++.-. -..+..+.-..+ .+. .++++.||+|+.++.... ++.+.+....+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 8888888889999999999987632 122222222211 234 467778999998754332 34445555555
Q ss_pred CCCceEEEEeecccC--------CCHHHHHHHHHHhhhc
Q 030113 149 KNHDWHIQACSALTG--------DGLVDGLEWISQRVTG 179 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~--------~gi~~~~~~i~~~~~~ 179 (183)
.....|++.-|+..- ..|.+|++++.+.+..
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 556778888887652 2256777776666543
No 306
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=8.1e-12 Score=93.77 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=106.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCC----C
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGT----H 86 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d 86 (183)
...-.|+|+|..++|||||+.+|.+.+........+..+..+.- ...++.+|-..|...+..+....+... -
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 34578999999999999999999876543332223333333222 125789999888777777776655432 5
Q ss_pred EEEEEEeCCCcccHH-HHHHHHHHH----------------------------hC----C--------------------
Q 030113 87 AVIVVIDSTDRARIS-IMKDELFRL----------------------------LG----H-------------------- 113 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~-~~~~~~~~~----------------------------~~----~-------------------- 113 (183)
.+++|+|.+.|+.+- .+..|+..+ .. .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 788999999996533 222211111 00 0
Q ss_pred ---------CCCCCCeEEEEEeCCCCCCCC----C-HH---HHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 114 ---------EDLQHSVVLIFANKQDLKDAM----T-PA---EITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 114 ---------~~~~~~~vilv~nK~Dl~~~~----~-~~---~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
....++|++||++|+|..... . .+ ++.+..-+..+...++.++.||++...+++.+...|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 001138999999999964211 0 01 122222233334467789999999999999999999998
Q ss_pred hhccC
Q 030113 177 VTGKA 181 (183)
Q Consensus 177 ~~~~~ 181 (183)
+...+
T Consensus 263 l~~~~ 267 (472)
T PF05783_consen 263 LYGFP 267 (472)
T ss_pred hccCC
Confidence 87654
No 307
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.40 E-value=3e-12 Score=83.89 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=52.8
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+.-|+|+|++.++- .... .+.... .--++|+||.|+.+.... +.+.+.... -++..+++++|.++|
T Consensus 119 ~~~v~VidvteGe~---~P~K-----~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~ktg 186 (202)
T COG0378 119 HLRVVVIDVTEGED---IPRK-----GGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKTG 186 (202)
T ss_pred ceEEEEEECCCCCC---Cccc-----CCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCCC
Confidence 48899999987631 1111 011111 234899999999876543 333322221 346778999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030113 164 DGLVDGLEWISQRV 177 (183)
Q Consensus 164 ~gi~~~~~~i~~~~ 177 (183)
+|++++++|+....
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999997754
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.40 E-value=2e-11 Score=84.99 Aligned_cols=154 Identities=20% Similarity=0.184 Sum_probs=98.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc-----------ccccC------------------cccceeEEEEE------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV-----------VTTHP------------------TVGSNVEELVY------ 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~-----------~~~~~------------------~~~~~~~~~~~------ 58 (183)
..+...|.|.|.||+|||||+.+|...-. .++++ ..+..+..+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 35778999999999999999998842110 11111 11111111111
Q ss_pred --------------cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 59 --------------KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 59 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
.+..+.++.|.|--+... ...+-+|.+++|.=+--.+..+.+..-+.++.. ++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eee
Confidence 156889999987433222 223458999999888777777777666666533 899
Q ss_pred EeCCCCCCCC-CHHHHHhhcCcCc----cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 125 ANKQDLKDAM-TPAEITDALSLHS----IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 125 ~nK~Dl~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||.|..... ...++...+.... ......|++.+||.+|+|++++|+.+.++...
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9999964321 1233333333221 12356689999999999999999999887653
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=9e-12 Score=90.46 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-----------------eEEEEEEcCCCh-----
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-----------------IRFEAWDVGGQE----- 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~----- 72 (183)
++|+++|.||+|||||+|++.+..... ...|...+...+...+ ..+.++|+||-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999998876311 2233344433333322 358999999932
Q ss_pred --hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 --RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 --~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22334455678999999999984
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.3e-12 Score=100.61 Aligned_cols=115 Identities=21% Similarity=0.164 Sum_probs=85.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--------------c-------cccCcccceeEEEEEcC-eEEEEEEcCCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--------------V-------TTHPTVGSNVEELVYKN-IRFEAWDVGGQ 71 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--------------~-------~~~~~~~~~~~~~~~~~-~~~~~~D~~g~ 71 (183)
..+..+|.|+||..+||||+..+++...- . +...|+......+.+++ ..++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56778999999999999999999853210 0 01123444445667775 99999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
-+|.......++-+|++++|+|+...-.... ...|..... .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECcccccc
Confidence 9999999999999999999999987632222 233333333 46999999999997543
No 311
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.38 E-value=9.2e-13 Score=82.55 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc--CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
+|++++|+.|+|||+|+.++....+.... ++.+ +......+.+.++.++.||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999776664322 2222 2333345577889999999999
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
...++... |...+... ...+.|.++++||.|+.+... +.... ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHHH--------HHHHHHHhCCCcchhh
Confidence 98887654 54444332 335688999999999743221 11111 1137788999999885
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.38 E-value=7.6e-12 Score=82.63 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=43.2
Q ss_pred eEEEEEEcCCChh----hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 61 IRFEAWDVGGQER----LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 61 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
..+.++||||-.. ....+..++..+|++|+|.+++...+-... ..+...... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 3689999999532 235678888999999999999986544433 333333333 234489999984
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.36 E-value=1.6e-11 Score=86.50 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 119 SVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 119 ~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
..-++|+||+|+.+.. ....+.+.+. ...+..+++++|+++|+|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr---~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAR---EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHH---hhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5569999999997532 2222333322 22456789999999999999999999874
No 314
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.36 E-value=9.3e-12 Score=92.62 Aligned_cols=130 Identities=17% Similarity=0.264 Sum_probs=95.3
Q ss_pred cccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCC
Q 030113 48 TVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 48 ~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (183)
|.|+....+.+ .+..+.++|++|+...+..|..++.+.+++|||+++++. .++.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 66666677788 889999999999999999999999999999999998743 3477777888888887777
Q ss_pred CCCeEEEEEeCCCCCC-----C---------------CCHHHHHhhcC----cCccCC---CceEEEEeecccCCCHHHH
Q 030113 117 QHSVVLIFANKQDLKD-----A---------------MTPAEITDALS----LHSIKN---HDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~-----~---------------~~~~~~~~~~~----~~~~~~---~~~~~~~~S~~~~~gi~~~ 169 (183)
.+.|++|+.||.|+.. . .........+. ...... ..+.+..++|.+.++++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 7899999999999632 1 11122222111 111111 5556778999999999999
Q ss_pred HHHHHHhh
Q 030113 170 LEWISQRV 177 (183)
Q Consensus 170 ~~~i~~~~ 177 (183)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887643
No 315
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.36 E-value=2.2e-12 Score=89.90 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=71.7
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhcCcCccC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDALSLHSIK 149 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 149 (183)
+++..+...+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 555666677899999999999999887 88888888875532 468999999999996532221 111222 1
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+++++++||+++.|++++++.+.+
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 24567999999999999999998764
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=2.7e-11 Score=85.89 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEE--c--CeEEEEEEcCCCh---------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVY--K--NIRFEAWDVGGQE--------- 72 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~--~--~~~~~~~D~~g~~--------- 72 (183)
.++|+|+|.+|+|||||+|.|++....... .+..+....... . .+++.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999886543221 122222222222 2 3688999999821
Q ss_pred ---------hhHhhHHhh-------c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 73 ---------RLRTSWATY-------Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 73 ---------~~~~~~~~~-------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
++......- + ...|+++|+++++.. .+..+.-..+..+.. .+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence 111111000 0 124899999998753 233344344444443 48899999999986544
Q ss_pred CHHHHHh
Q 030113 135 TPAEITD 141 (183)
Q Consensus 135 ~~~~~~~ 141 (183)
....+++
T Consensus 159 el~~~k~ 165 (281)
T PF00735_consen 159 ELQAFKQ 165 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
No 317
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.3e-12 Score=90.96 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=110.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccccc------Ccccce-------------------eEEEE----------
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH------PTVGSN-------------------VEELV---------- 57 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~------~~~~~~-------------------~~~~~---------- 57 (183)
.++..++|.-+|+...||||++.++.+-...... .|+..- |..+.
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 3467899999999999999999998764422100 011000 00000
Q ss_pred -------E-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 58 -------Y-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 58 -------~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
+ --.++.|+|+||++-....+.+...-.|++++++..++++..-.....+..+-- ..-+.++++.||+|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiD 190 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKID 190 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhh
Confidence 0 014789999999998877777766677999999999877654333333333211 12256899999999
Q ss_pred CCCCCCHHHHHhhcCc--CccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 130 LKDAMTPAEITDALSL--HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 130 l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+..+....+.-+..+. ......+.|++++||.-..|++-+.+.|++.++.-
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 9876655444333332 11223677999999999999999999999988643
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=3.2e-10 Score=78.40 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred eEEEEEEcCCChh-------------hHhhHHhhccCC-CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 61 IRFEAWDVGGQER-------------LRTSWATYYRGT-HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 61 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
.++.++|+||-.. ...+...|+++. +.+++|+|++..-.-..... +.+. ....+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~---ld~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKE---VDPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHH---HHHcCCcEEEEEE
Confidence 5899999999531 234566777744 68899998865322111111 1111 1224689999999
Q ss_pred CCCCCCCC
Q 030113 127 KQDLKDAM 134 (183)
Q Consensus 127 K~Dl~~~~ 134 (183)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99987543
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=9.2e-11 Score=79.84 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=61.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 85 (183)
-.-+|+++|.|.+|||||+..+....-. . ...|..+-...+.+++..+++.|.||.-. ..++..+..+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4589999999999999999999654321 1 22444444556778999999999999322 234555667889
Q ss_pred CEEEEEEeCCCc
Q 030113 86 HAVIVVIDSTDR 97 (183)
Q Consensus 86 d~ii~v~d~~~~ 97 (183)
|.++.|.|++..
T Consensus 141 DlilMvLDatk~ 152 (364)
T KOG1486|consen 141 DLILMVLDATKS 152 (364)
T ss_pred cEEEEEecCCcc
Confidence 999999999876
No 320
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.25 E-value=1.6e-10 Score=88.86 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhh----------HhhHHhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERL----------RTSWATY 81 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~ 81 (183)
..++|+++|.+|+||||++|.|++....... .|...........+..+.++||||-... ...+..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4578999999999999999999987643222 2222222223346789999999994321 1122233
Q ss_pred cc--CCCEEEEEEeCCCcccH-H--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 82 YR--GTHAVIVVIDSTDRARI-S--IMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 82 ~~--~~d~ii~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+. .+|++|+|..+...... . .....+..++... ....+|||.|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 34 47999999887533221 1 2334444444422 2356899999999765
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.1e-11 Score=92.83 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccC----------------cccceeE----E-----EEEcCeEEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----------------TVGSNVE----E-----LVYKNIRFEAWDV 68 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----------------~~~~~~~----~-----~~~~~~~~~~~D~ 68 (183)
+....+++++|+-.+|||+|+..|.....+.... ..|+.+. + ...++.-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4566899999999999999999987654332111 1111111 1 1124567899999
Q ss_pred CCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 69 GGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
||+-.|.+.+-..++.+|++++|+|+.++-.+..- ..+....+ .+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh----ccCcEEEEEehhHH
Confidence 99999999999999999999999999887554332 22333322 46899999999995
No 322
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.23 E-value=1.5e-10 Score=83.22 Aligned_cols=160 Identities=16% Similarity=0.084 Sum_probs=99.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-----------------ccCcccceeEEEEE------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----------------THPTVGSNVEELVY------------------ 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~------------------ 58 (183)
.+..+.+.++|+.+.|||||+-.|..+.... ...+....+.-+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4577999999999999999998885443221 11122222211111
Q ss_pred -----cCeEEEEEEcCCChhhHhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 59 -----KNIRFEAWDVGGQERLRTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.+.-+.++||.|++.+.+.....+ ++.|..++++.+++.-+ ... .+.+........|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~t---kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMT---KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhh---hHhhhhhhhhcCCEEEEEEecccC
Confidence 134689999999999876654443 57899999999987732 111 122222223469999999999998
Q ss_pred CCCCHHHHHhh----cCc--------------------CccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 132 DAMTPAEITDA----LSL--------------------HSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 132 ~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++...+.+.+. +.. ......-+|+|.+|+.+|+|++-+.+.+ ..++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH-HhCCc
Confidence 76443322211 110 0111235799999999999997665544 34443
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.3e-10 Score=81.55 Aligned_cols=81 Identities=28% Similarity=0.326 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-cc--cCcccceeEEEEE------------------cCeEEEEEEcCC-----
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-TT--HPTVGSNVEELVY------------------KNIRFEAWDVGG----- 70 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-~~--~~~~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (183)
.++++|+|.||+|||||+|++...... .. ..|+..+...+.. ....++++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999765521 11 2333333322221 245789999998
Q ss_pred --ChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 71 --QERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.+.+.......++++|+++.|+|..+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 345667777888999999999999743
No 324
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.21 E-value=7.4e-10 Score=83.37 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccccc-----CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.++.+++.|+|+.++|||.+++.+.+..+.... +...++...+......+.+-|.+-. ........- ..||.+
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 356699999999999999999999997765411 1122222333334455566666543 211111121 668999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-----CHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-----TPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.++||.+++.+|......+...... ...|+++|.+|+|+.+.. +..++...++.. +-...|.+..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~~ 569 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKTL 569 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCCC
Confidence 9999999999998888777776443 679999999999986532 233444444322 2344555532
Q ss_pred CCHHHHHHHHHHhhh
Q 030113 164 DGLVDGLEWISQRVT 178 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~ 178 (183)
.. .++|..|+....
T Consensus 570 ~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQ 583 (625)
T ss_pred CC-chHHHHHHHhhh
Confidence 22 788888877654
No 325
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.21 E-value=6.5e-10 Score=81.35 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC----Ccc-----------cccC-------ccccee---EEEEE-----cCeEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG----EVV-----------TTHP-------TVGSNV---EELVY-----KNIRFE 64 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~----~~~-----------~~~~-------~~~~~~---~~~~~-----~~~~~~ 64 (183)
.-++.|+|+|+.++|||||++++.+. +.. -.++ |....+ ..+.. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999876 222 1112 222222 22222 237899
Q ss_pred EEEcCCC--------hhhHh---------------------hHHhhcc-CCCEEEEEE-eCC----CcccHHHHHHHHHH
Q 030113 65 AWDVGGQ--------ERLRT---------------------SWATYYR-GTHAVIVVI-DST----DRARISIMKDELFR 109 (183)
Q Consensus 65 ~~D~~g~--------~~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~~~~~~~~ 109 (183)
++||+|- .+... -+...++ .++..++|. |.+ .++.+......+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999981 11111 1334455 789999988 775 11223333332222
Q ss_pred HhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc--CCCHHHHHHHHHH
Q 030113 110 LLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT--GDGLVDGLEWISQ 175 (183)
Q Consensus 110 ~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~gi~~~~~~i~~ 175 (183)
.+.. .++|++++.||.|-..+. ..++.+.+.. ..+++++.+|+.. -+.|..+++.+..
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~e----ky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHPE-TEALRQELEE----KYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHH----HhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 2222 479999999999933222 2222322221 1234566766554 3446666655543
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.20 E-value=9e-11 Score=82.63 Aligned_cols=76 Identities=26% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcC-----------------eEEEEEEcCCCh-------
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKN-----------------IRFEAWDVGGQE------- 72 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~------- 72 (183)
|+++|.||+|||||+|++.+..... ...|.......+.+.+ ..++++|+||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999998876421 2234344444444332 259999999932
Q ss_pred hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 23334455678899999999874
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=81.92 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=95.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEE-cCeEEEEEEcCCC---------hhhHhhHHh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVY-KNIRFEAWDVGGQ---------ERLRTSWAT 80 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~ 80 (183)
.....-|.|+|.+|+|||||++++.+..... ...|...+...... .+..+.+.||.|- +.|+.. ..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT-Le 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT-LE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence 3456789999999999999999998544321 23455555544444 3456788899982 223332 23
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCC----CeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH----SVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
....+|.++.|.|++.|..-......+.-+ +....+. ..++=|=||.|..+..... ..+ ..+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~n-~~v 319 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EKN-LDV 319 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCcc------------ccC-Ccc
Confidence 356789999999999997544443333333 2222222 2345566777764331110 011 168
Q ss_pred EeecccCCCHHHHHHHHHHhhh
Q 030113 157 ACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.+|+.+|+|++++++.+-..+.
T Consensus 320 ~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccCccHHHHHHHHHHHhh
Confidence 8999999999999988766543
No 328
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.5e-10 Score=80.15 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=105.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc-------CCccc------------ccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL-------GEVVT------------THPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
++..++|.-||+...|||||..++.. ..+.. ...|+......+.....++.-.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45779999999999999999877732 11111 112333333334445678889999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-----HHHhhcCcCccC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-----EITDALSLHSIK 149 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~ 149 (183)
-..+.....+.|+.|+|+.++|.. +...+..+.-..+. .-..+++.+||.|+.++.... ++.+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 888888888899999999999874 33334444333332 125688899999998543322 334445555556
Q ss_pred CCceEEEEeecc---cCCC-------HHHHHHHHHHhh
Q 030113 150 NHDWHIQACSAL---TGDG-------LVDGLEWISQRV 177 (183)
Q Consensus 150 ~~~~~~~~~S~~---~~~g-------i~~~~~~i~~~~ 177 (183)
..+.|++.-||. +|.+ |.++++.+-+.+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 678889888765 3422 555666555544
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.14 E-value=1.5e-10 Score=78.03 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=64.1
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhc---CcCccC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA-EITDAL---SLHSIK 149 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~-~~~~~~---~~~~~~ 149 (183)
+...+..+++++|++++|+|++++..- ....+ ... ..+.|+++|+||+|+.+..... ...... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS--LIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc--cchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999876311 11111 111 1458999999999986443322 222221 001111
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
....+++++||+++.|++++++++.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999988764
No 330
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.12 E-value=3.2e-10 Score=74.90 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=42.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
...++++++|.+|+|||||+|++.+......++..|++.....+ -+..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 34589999999999999999999988766656555554432222 234789999998
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.11 E-value=4.4e-10 Score=73.41 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=42.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc-CeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK-NIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g 70 (183)
.+..+++++|.+|+|||||+|++.+......+++.|.+.....+. +..+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 356889999999999999999999887766666666554433322 24588999998
No 332
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.10 E-value=1e-09 Score=75.23 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=87.0
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc----------ccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR----------ARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+..+.+++.++|++||.+.+..|...+++..++|+|+..+.. ..+.+....+..+.+..-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 33344444555678999999999999999999999999999999988744 22444444555555544445
Q ss_pred CCeEEEEEeCCCCCCC------------------------------CCHHHHH------hhcCcCcc----CCCceEEEE
Q 030113 118 HSVVLIFANKQDLKDA------------------------------MTPAEIT------DALSLHSI----KNHDWHIQA 157 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~------------------------------~~~~~~~------~~~~~~~~----~~~~~~~~~ 157 (183)
.+.+|+..||-|+..+ ....-.. +.+..... ..+.+...+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 6889999999997521 0000000 00000000 123444567
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+.|.+.++|..+|+...+.++..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 78899999999999877766543
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.09 E-value=2.4e-09 Score=76.74 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=83.6
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-----------ccCcccceeEEEEE--c--CeEEEEEEcCCChhh--
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-----------THPTVGSNVEELVY--K--NIRFEAWDVGGQERL-- 74 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-----------~~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~-- 74 (183)
....-.++|+++|+.|+|||||+|.|++..... ..+++.+....... + ..++.++||||--++
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 344678999999999999999999998763221 12333333333333 2 368899999992110
Q ss_pred ------------HhhHHhhc--------------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 75 ------------RTSWATYY--------------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 75 ------------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......|+ ...|+++|.+.++.. .+..+.-..+.-+.. .+.+|-|+.|+
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~Ka 172 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKA 172 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeecc
Confidence 01111111 134899999998753 344444444444332 47789999999
Q ss_pred CCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 129 DLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 129 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
|.........+++...... ...++++|.
T Consensus 173 D~lT~~El~~~K~~I~~~i-~~~nI~vf~ 200 (373)
T COG5019 173 DTLTDDELAEFKERIREDL-EQYNIPVFD 200 (373)
T ss_pred ccCCHHHHHHHHHHHHHHH-HHhCCceeC
Confidence 9876555554444443222 234455653
No 334
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.09 E-value=1.9e-10 Score=85.93 Aligned_cols=160 Identities=15% Similarity=0.199 Sum_probs=111.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+...+|+.|+|..++|||+|+++++.+.+.....+.+-.+. .+.. ...-+.+.|.+|... ..|....|++|+
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 45779999999999999999999999888765544443332 2222 344556667666332 345667899999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|+...+.++|+.+......+..+......|.++++++.-.............-.....+...+.+|++++..|.++...|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 99999999999988888887777666779999999987643222111111111111223345569999999999999999
Q ss_pred HHHHHhhh
Q 030113 171 EWISQRVT 178 (183)
Q Consensus 171 ~~i~~~~~ 178 (183)
..+...+.
T Consensus 182 ~~~~~k~i 189 (749)
T KOG0705|consen 182 QEVAQKIV 189 (749)
T ss_pred HHHHHHHH
Confidence 98887654
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.05 E-value=3.8e-10 Score=73.62 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=61.9
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceE
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+..+...++++|++++|+|++++..... ..+...... .++|+++|+||+|+.+........ ... ...+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCc
Confidence 3456677788999999999987642211 122222221 358999999999985432111111 111 113356
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++++|++++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 336
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=7.6e-09 Score=74.67 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=77.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc----------cCcccceeEEEEE--c--CeEEEEEEcCCChhh-
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----------HPTVGSNVEELVY--K--NIRFEAWDVGGQERL- 74 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----------~~~~~~~~~~~~~--~--~~~~~~~D~~g~~~~- 74 (183)
....+.-.+.++++|+.|.|||||+|.|+....... ..+..+....... + ..++.++||||-.+.
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 344556779999999999999999999987643321 1233333333333 2 367899999982110
Q ss_pred -------------HhhHHhh-----------cc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 75 -------------RTSWATY-----------YR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 75 -------------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......| +. ..|+++|.+.++.. .+..+.-.++.-+. ..+++|-|+.|+
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKA 168 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeecc
Confidence 1111111 22 45899999998753 23444444444433 347899999999
Q ss_pred CCCCCCCHHHHHh
Q 030113 129 DLKDAMTPAEITD 141 (183)
Q Consensus 129 Dl~~~~~~~~~~~ 141 (183)
|.........+++
T Consensus 169 D~lT~~El~~~K~ 181 (366)
T KOG2655|consen 169 DTLTKDELNQFKK 181 (366)
T ss_pred ccCCHHHHHHHHH
Confidence 9765544444333
No 337
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.3e-10 Score=79.61 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------------cccC-------cccceeEE--EEE------------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------------TTHP-------TVGSNVEE--LVY------------ 58 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------------~~~~-------~~~~~~~~--~~~------------ 58 (183)
.++++|+|...+|||||+-.+.+++.. ++.. +.|++... ++|
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 489999999999999999888655432 1111 22222111 112
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccC--CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRG--THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~ 136 (183)
.+--+.++|.+|+.+|.......+.. .|.+.+|+.+....... .+..+--+.. .++|++++++|+|+...-..
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 13467899999999998776655543 58899999987664322 1222222222 46999999999999754211
Q ss_pred ----HHHHhhcC---------------------cCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 137 ----AEITDALS---------------------LHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 137 ----~~~~~~~~---------------------~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
+++...+. .......-+|+|.+|+..|+|++-+...
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 11111111 1122345679999999999998766443
No 338
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.00 E-value=7.5e-10 Score=74.64 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=87.4
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+....+.+.++|++|+...+..|..++++.-.+++++..+ +.+.+.+....+..++.+.=..
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 444444445555678899999999999999999999887777776654 3345666667777777776667
Q ss_pred CCeEEEEEeCCCCCCCCC------------------HHHHHh----hcC-cCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKDAMT------------------PAEITD----ALS-LHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~~~------------------~~~~~~----~~~-~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+.++|+..||.|+.++.. .+...+ .+. ...-...-..-..+.|.+.+||.-+|.++-
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 899999999999864311 111111 110 000011122234567888999999999887
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+..
T Consensus 346 DtiLq 350 (359)
T KOG0085|consen 346 DTILQ 350 (359)
T ss_pred HHHHH
Confidence 76654
No 339
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.00 E-value=3e-08 Score=74.79 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=69.2
Q ss_pred eEEEEEEcCCC-------------hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 61 IRFEAWDVGGQ-------------ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
-++.++|.||- +....+...|+.+.++||+|+.- .|.+.-+.....++......+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 47899999992 33455678889999999999963 455666666677777777778999999999
Q ss_pred CCCCCC--CCHHHHHhhcCcCccCCCceEEEEee
Q 030113 128 QDLKDA--MTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 128 ~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.|+.+. ..+..+.+++.-..+......||.+-
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVV 522 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVV 522 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEE
Confidence 999764 35566666665444444444566654
No 340
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1e-09 Score=82.98 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=78.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
+..+|.++-+-.+||||+-++++...-. ....|+........+...++.++|||||.+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 5578999999999999999888542210 0011222222335567899999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.-.....++..|++++++|+..+-. ......|..+.. .++|.+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 9999999999999999999875521 112233333322 469999999999964
No 341
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=8.2e-09 Score=70.03 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=83.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc----------ccCccccee--EEEEEcC--eEEEEEEcCCCh-----
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------THPTVGSNV--EELVYKN--IRFEAWDVGGQE----- 72 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~----- 72 (183)
....-+++|+|+|.+|.|||||+|.+....... ...|..... ..+..++ .++.++||||-.
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 344567999999999999999999996544322 111222221 1222233 578899999811
Q ss_pred -------------hhH--------hhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 73 -------------RLR--------TSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 73 -------------~~~--------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
.+. ......+. ..++++|.+.++.. ++.-+.-.+..-+.. -+.++-|+-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 111 11112222 24889999988753 333333222222222 266899999999
Q ss_pred CCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 130 LKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
-...+...++++...... ...++.+|+--+.+-+
T Consensus 196 tlTleEr~~FkqrI~~el-~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKEL-EKHGIDVYPQDSFDED 229 (336)
T ss_pred cccHHHHHHHHHHHHHHH-HhcCcccccccccccc
Confidence 766656666665554332 2344456665554443
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=1.8e-09 Score=69.29 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce--eEEEEEcCeEEEEEEcCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~ 71 (183)
-+++++|.+|+|||||+|++.+......+...+.+ ...+..+. .+.+|||||-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 38999999999999999999988765544433332 22233333 6899999994
No 343
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=2.4e-09 Score=78.23 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=62.1
Q ss_pred HhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 79 ATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
...+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+........+.+ ...+++++.
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 34578999999999998765 3334555555442 2468999999999996442222222222 123457999
Q ss_pred eecccCCCHHHHHHHHHHh
Q 030113 158 CSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~ 176 (183)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
No 344
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.95 E-value=2.7e-09 Score=73.08 Aligned_cols=149 Identities=19% Similarity=0.110 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--cc-cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCCE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--TT-HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTHA 87 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (183)
-++.++|-|.+||||++..+.+.... .+ .++...-.....++..++++.|.||.-+ ...+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 58999999999999999999775432 11 1222222233457889999999998321 23445566778999
Q ss_pred EEEEEeCCCcccHHHH-----------------------------------------HHHHHHH----------------
Q 030113 88 VIVVIDSTDRARISIM-----------------------------------------KDELFRL---------------- 110 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~-----------------------------------------~~~~~~~---------------- 110 (183)
+++|.|+..|-+...+ +..+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999877221111 1111111
Q ss_pred -----hCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 111 -----LGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 111 -----~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+.. ....+|.+.+.||+|...- +++.- ........++||..+.|++++++.+.+.+
T Consensus 220 dLIdvVeg-nr~yVp~iyvLNkIdsISi---EELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 220 DLIDVVEG-NRIYVPCIYVLNKIDSISI---EELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhcc-Cceeeeeeeeecccceeee---eccce-------eeeccceeecccccccchHHHHHHHhhcc
Confidence 111 1124889999999995321 12111 12233588999999999999999887754
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=6e-09 Score=68.06 Aligned_cols=90 Identities=20% Similarity=0.101 Sum_probs=57.8
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.++++|.+++|+|++++..- ....+...+... ..++|+++|+||+|+.+..........+.. ......+.+|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence 47889999999999886321 122233333221 245899999999999644222222222221 11223688999
Q ss_pred ccCCCHHHHHHHHHHhh
Q 030113 161 LTGDGLVDGLEWISQRV 177 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~ 177 (183)
+.+.|++++++.+.+.+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997654
No 346
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.1e-08 Score=73.61 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=74.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEc--------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYK-------------------------------- 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~-------------------------------- 59 (183)
...-|+++|.=..|||||++.++..+++.. .||......-+...
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 446689999999999999999999888642 22222211111110
Q ss_pred ---------CeEEEEEEcCCChh-----------hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC
Q 030113 60 ---------NIRFEAWDVGGQER-----------LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS 119 (183)
Q Consensus 60 ---------~~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (183)
--.+.++||||.-. |.....=+...+|.||++||+...+--++....+..+.. ..-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccc
Confidence 01689999999322 333445556889999999999765433334444444433 345
Q ss_pred eEEEEEeCCCCCCC
Q 030113 120 VVLIFANKQDLKDA 133 (183)
Q Consensus 120 ~vilv~nK~Dl~~~ 133 (183)
.+-+|.||+|..+.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67889999997654
No 347
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.92 E-value=3.9e-09 Score=76.04 Aligned_cols=151 Identities=20% Similarity=0.176 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------------c--ccCcccceeEEEE-----------------E--
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------------T--THPTVGSNVEELV-----------------Y-- 58 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------------~--~~~~~~~~~~~~~-----------------~-- 58 (183)
..+++|+|+..+|||||+..+..++.. + ..+++|..+..+. |
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 489999999999999998776443321 1 1122222211111 1
Q ss_pred ---c-CeEEEEEEcCCChhhHhhHHhhcc--CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 59 ---K-NIRFEAWDVGGQERLRTSWATYYR--GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 59 ---~-~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+ ---+.|+|.+|+++|.......+. -.|...+++-++-. +.....+.+.......+|+.+|++|+|+.+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 1 235789999999998766544332 34778888877644 222222222222234699999999999987
Q ss_pred CCCHHHHHhhcCc-------------------------CccCCCceEEEEeecccCCCHHHHHHH
Q 030113 133 AMTPAEITDALSL-------------------------HSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 133 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
....++..+.+.. .+....-+|+|.+|..+|+|++.+.-.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 6555543333221 111124678999999999998766443
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.91 E-value=4.3e-09 Score=72.77 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=91.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-c-cCcccce-eEEEEEcCeEEEEEEcCC----------ChhhHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-T-HPTVGSN-VEELVYKNIRFEAWDVGG----------QERLRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 81 (183)
.+.+.++++|.+|+|||+|++-+....... . .+..+.+ ......-+-.+.++|.|| .+++......|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 567899999999999999999998765432 1 1122221 111222346788999999 23344555555
Q ss_pred ccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh------cCcC--ccCC
Q 030113 82 YRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA------LSLH--SIKN 150 (183)
Q Consensus 82 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~------~~~~--~~~~ 150 (183)
+.+ .-.+++++|++-+ +..........+. ..++|..+|.||+|.+.....-..+.. +... ....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 533 3456677777644 2222222222222 257999999999997653221000011 1100 0011
Q ss_pred CceEEEEeecccCCCHHHHHHHHHH
Q 030113 151 HDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 151 ~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
...|.+.+|+.++.|+++++-.+.+
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccCCceeeecccccCceeeeeehhh
Confidence 2335667999999999998766554
No 349
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=8.1e-09 Score=73.85 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred HhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 79 ATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.... ...... ....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~-~~~~~~----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEE-ELELVE----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHH-HHHHHH----HHhCCCeEEE
Confidence 44578999999999999887 77777776665533 36899999999999654211 111111 1123468999
Q ss_pred eecccCCCHHHHHHHHHH
Q 030113 158 CSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~ 175 (183)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988754
No 350
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=1e-08 Score=74.84 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=64.7
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..++|.+++|++.....++..+..|+.... ..++|+++|+||+|+.+........+.... ....+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 467899999999988778888888876543 246899999999999754322222222211 12234689999999
Q ss_pred cCCCHHHHHHHHHHh
Q 030113 162 TGDGLVDGLEWISQR 176 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~ 176 (183)
++.|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998754
No 351
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.90 E-value=5.7e-09 Score=75.63 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
.....+++|+|-||+||||+||+|.+.....+++..|++...... -.-.+.++||||
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG 186 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG 186 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence 356789999999999999999999999887777777766554433 234589999999
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.90 E-value=6.1e-09 Score=74.53 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||+|++.+.......+..|++...... -+..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence 45689999999999999999999988766655555544433222 2346899999994
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=6.1e-09 Score=68.98 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=40.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE--EEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE--LVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||++++.+..........+++... +... ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34579999999999999999999987765444433333222 2222 56899999994
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=7.8e-09 Score=67.43 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=42.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEE-EEcCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEEL-VYKNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g 70 (183)
....+++++|.+++||||+++++.+.......++.+++.... ...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 356789999999999999999999877666666666554322 12344799999998
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=5.8e-09 Score=74.23 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=41.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE--EEEcCeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE--LVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~ 71 (183)
...++++++|.+|+|||||+|++.+..........+++... +.. +..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence 35689999999999999999999987765555444433322 222 236899999995
No 356
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=7.1e-09 Score=74.53 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=58.9
Q ss_pred hccCCCEEEEEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+.++|.+++|+|+.++...... ..|+... .. .++|+++|+||+|+.+. .......... ....+.+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEe
Confidence 46899999999999887655444 4444443 22 46899999999999632 1211111111 112345799999
Q ss_pred cccCCCHHHHHHHHHH
Q 030113 160 ALTGDGLVDGLEWISQ 175 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~ 175 (183)
++++.|++++++.+..
T Consensus 149 A~~g~gi~~L~~~l~g 164 (298)
T PRK00098 149 AKEGEGLDELKPLLAG 164 (298)
T ss_pred CCCCccHHHHHhhccC
Confidence 9999999999988643
No 357
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.4e-08 Score=75.35 Aligned_cols=115 Identities=16% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc--ccCcccce---------------------------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--THPTVGSN--------------------------------------- 52 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--~~~~~~~~--------------------------------------- 52 (183)
.+...||++.|..++||||++|+++.....+ ..+++.+.
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3677899999999999999999996443211 01110000
Q ss_pred -----eEEEEEc-------CeEEEEEEcCCC---hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCC
Q 030113 53 -----VEELVYK-------NIRFEAWDVGGQ---ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 53 -----~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
...+-++ .-.+.++|.||- .....-+..+..++|++|+|.++-+. +......+.......
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~~--- 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSEE--- 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhcc---
Confidence 0001111 126788999983 34455567778899999999998543 544444444443332
Q ss_pred CCeEEEEEeCCCCCCC
Q 030113 118 HSVVLIFANKQDLKDA 133 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~ 133 (183)
+..+.|+.||+|....
T Consensus 261 KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 KPNIFILNNKWDASAS 276 (749)
T ss_pred CCcEEEEechhhhhcc
Confidence 5667888899997543
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.87 E-value=3.5e-09 Score=77.99 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=65.2
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIK 149 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~ 149 (183)
++++......+...++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.+.. ...+..+.+.... +
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence 56788888888899999999999976531 1222233332 257899999999986432 2333333221110 1
Q ss_pred CCc---eEEEEeecccCCCHHHHHHHHHHh
Q 030113 150 NHD---WHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 150 ~~~---~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
..+ ..++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 112 248999999999999999998764
No 359
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4e-08 Score=74.45 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=83.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
..+-++|+||||+|||||++.+...-...+...+.=-+.-+..+..++.+..+|.+ ...+....+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEeccc
Confidence 55788899999999999999887653322221111112234556789999999932 223344456689999999997
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccC--CCceEEEEeeccc
Q 030113 96 DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIK--NHDWHIQACSALT 162 (183)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~ 162 (183)
-+ |.--.-.+..++..... ..++-|.+..|+... .........+....+. +.++.+|..|...
T Consensus 145 fG--fEMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FG--FEMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cC--ceehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 55 32222233333333221 346678899998653 2333444433322221 3567788888654
No 360
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.81 E-value=3.8e-08 Score=71.90 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-cc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCCh----
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQE---- 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~---- 72 (183)
++++|+|.|++|||||++++.+... .. ...|...+...+.+. ...+.+.|+||-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987754 22 223344444434332 2478999999832
Q ss_pred ---hhHhhHHhhccCCCEEEEEEeCC
Q 030113 73 ---RLRTSWATYYRGTHAVIVVIDST 95 (183)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (183)
.........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 24446667789999999999985
No 361
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.81 E-value=2.5e-07 Score=63.89 Aligned_cols=84 Identities=14% Similarity=0.016 Sum_probs=57.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Cccc----ccCcccceeEEEEE---cCeEEEEEEcCCChhh------HhhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVVT----THPTVGSNVEELVY---KNIRFEAWDVGGQERL------RTSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~~----~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~ 79 (183)
.+..-|+|+|++++|||+|+|.+.+. .+.. ...|.|+-...... ....+.++||+|-... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45677899999999999999999988 5532 23455555444443 3578999999994332 22222
Q ss_pred hhccC--CCEEEEEEeCCCcc
Q 030113 80 TYYRG--THAVIVVIDSTDRA 98 (183)
Q Consensus 80 ~~~~~--~d~ii~v~d~~~~~ 98 (183)
..+.. ++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33333 78999988876543
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=1.6e-08 Score=67.01 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=63.2
Q ss_pred CCC-hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 69 GGQ-ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 69 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
||+ .+........++++|.+++|+|++++..... ..+.... .++|+++|+||+|+.+.....+..+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 443 3455666777899999999999987643211 1111211 24789999999998643211111121111
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123589999999999999999998875
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.78 E-value=2e-08 Score=71.47 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 69 GGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 69 ~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
|||. +........++.+|.+++|+|+.++.+-.. ..+...+ .++|+++|+||+|+.+........+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 5543 455667778899999999999987643211 2223332 24799999999998643212222122211
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+++.+|++++.|++++.+.+.+.+.+
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 22468999999999999999988877654
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=3.3e-08 Score=64.40 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELF-RLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....+....+. ......++.+|++++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999988754321 2222 22222 4689999999999964321111111121 1123468999999999
Q ss_pred CHHHHHHHHHHhh
Q 030113 165 GLVDGLEWISQRV 177 (183)
Q Consensus 165 gi~~~~~~i~~~~ 177 (183)
|++++.+.+.+.+
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999987653
No 365
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=9.3e-09 Score=79.73 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=77.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc---------------cccCcccceeEE----EEEcCeEEEEEEcCCChhhH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------TTHPTVGSNVEE----LVYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------~~~~~~~~~~~~----~~~~~~~~~~~D~~g~~~~~ 75 (183)
....+++++.+...|||||+..+....-. +...+.|++... ...++..+.++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45578999999999999999988543211 112333333322 22367899999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCCCcc---cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRA---RISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
....+..+-+|++++++|+..+- +..-+++.|.. +...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhh
Confidence 99999999999999999998652 22333333332 355789999999
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=2e-08 Score=65.50 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=37.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce--eEEEEEcCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN--VEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g 70 (183)
....+++++|.+|+|||||+|.+.+..........+++ ...... +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe-cCCEEEEECCC
Confidence 45688999999999999999999987643322222211 122222 35689999998
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=1.3e-08 Score=68.66 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=37.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc--------ccccCcccceeEEEEEc-CeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV--------VTTHPTVGSNVEELVYK-NIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~D~~g 70 (183)
+..+++++|.+|+|||||+|++.+... ...+...+++....... ...+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence 346899999999999999999987542 12233334443333331 12689999998
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.76 E-value=6.8e-07 Score=57.29 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=76.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc--CeEEEEEEcC-CC--------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK--NIRFEAWDVG-GQ-------------------- 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~-g~-------------------- 71 (183)
+...+|+|.|+||+||||++.++...-.......-|+-...+..+ ..-|.++|+. |.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 457899999999999999998886432211122223333333222 2344555554 20
Q ss_pred -hhh----HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 72 -ERL----RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 72 -~~~----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
+.+ ......+++.+|.+| +|--.+ ++.....+...+......+.|++.++.+.+..+ -.++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~----- 151 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKK----- 151 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhh-----
Confidence 111 122334455667654 554433 333334444444333335688888888876421 1111111
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...+.+| .+.+|-+.+++.+...+..
T Consensus 152 ---~~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 152 ---LGGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ---cCCEEEE----EccchhhHHHHHHHHHhcc
Confidence 1222233 5556666888888877754
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.73 E-value=8.1e-08 Score=62.74 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCChhhHhhHHh--------hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWAT--------YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
..+..++|++|-.+-...... ..-..+.+++++|+........-...+...+... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 356788999996543333322 2234699999999864432111112222322222 1789999996
No 370
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.2e-09 Score=77.46 Aligned_cols=112 Identities=22% Similarity=0.168 Sum_probs=81.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--------cc-------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--------VV-------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
+-.+|.|+.+-.+||||...+++.-. .. +...|+......+.+++.++.++||||+.+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 45789999999999999998885311 00 1122333444567789999999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+-....+++-.|+++.|+|++.+-.-..+ ..|... ...++|.+.++||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtl-tvwrqa----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhc----cccCCchhhhhhhhhhhh
Confidence 99999999999999999999865221111 222222 335689999999999754
No 371
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=67.55 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=59.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEE-----------------cCeEEEEEEcCC---
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVY-----------------KNIRFEAWDVGG--- 70 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~~~D~~g--- 70 (183)
..+.+++.|+|.|++|||||+|.+....... ...|+..+...+.. -...+++.|++|
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3467899999999999999999997655431 22343333333322 146789999998
Q ss_pred ----ChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 71 ----QERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 ----~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
.+.......+.++.+|+++-|+++.+.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 234556667778899999999988644
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=5.8e-08 Score=69.55 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=65.8
Q ss_pred cCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 68 VGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
.|||. +........++.+|++++|+|+.++.+.. ..++..... +.|+++|.||+|+.+........+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 36643 44566677789999999999998764321 122333322 578999999999864321112222121
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
..+.+++.+|++++.|++++.+.+.+.+.+
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 113468999999999999999988876643
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.66 E-value=5.8e-08 Score=62.25 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=49.3
Q ss_pred HHhhccCCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
....++++|++++|+|+.++.+.. .+..++... . .++|+++|+||+|+.++....+..+.+.. .+..+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeE
Confidence 345678999999999998875432 233333221 1 46899999999998643222222222221 22468
Q ss_pred EEeecccCCC
Q 030113 156 QACSALTGDG 165 (183)
Q Consensus 156 ~~~S~~~~~g 165 (183)
+++|+.++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998764
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.61 E-value=3.9e-07 Score=66.28 Aligned_cols=96 Identities=17% Similarity=0.069 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.++||+|.... ........ .+.|..++|+|+.....-......+.... ..--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCC
Confidence 457999999996432 12222222 35789999999976543222222222221 124788999998543
Q ss_pred CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
.- ..+.... ..+.|+..++ +|++++++..
T Consensus 295 ~G-~~ls~~~------~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 295 GG-AALSIAY------VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cc-HHHHHHH------HHCcCEEEEe--CCCChhhccc
Confidence 22 1111111 1234677776 6888877654
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=1e-07 Score=69.75 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCChhh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.++++|.+|+|||||+|+|.+.....+....+ ....-+.... ...++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 36899999999999999999876433221111 1111222221 2358999996554
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.58 E-value=1.5e-07 Score=65.85 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
..++++|.+|+|||||+|++.+.....+. +|..... +... ...++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~--~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFH--GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcC--CcEEEeCCCccc
Confidence 36789999999999999999876533211 1222222 2232 337999999544
No 377
>PRK12289 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.3e-07 Score=69.24 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~ 71 (183)
.++++|++|+|||||+|+|.+.....+....+ ....-+.... ...++||||.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~ 234 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGF 234 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCc
Confidence 37899999999999999999766443322222 1122222322 2378999994
No 378
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.1e-08 Score=70.82 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----------------------------------cccccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----------------------------------VVTTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~~~ 59 (183)
++..+++.++|+..+||||+-..+...- ......|++.....+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4678999999999999999976553211 001112333444445556
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---HH---HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---IS---IMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
..++.+.|.||+..+...+.....++|..++|+.+...+- |+ ..+........ ..-...|+++||+|-..-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt---~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 232 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh---hccceEEEEEEeccCCcc
Confidence 7899999999999998888888889999999998854321 21 11122111111 123567999999996532
Q ss_pred CC----HHHHH----hhcCcC-ccCCCceEEEEeecccCCCHHHHHH
Q 030113 134 MT----PAEIT----DALSLH-SIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 134 ~~----~~~~~----~~~~~~-~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
.. ..+.. ..+... ........++++|..+|.++++..+
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 21 12222 222211 1122567799999999999887653
No 379
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.56 E-value=5.6e-07 Score=75.64 Aligned_cols=107 Identities=18% Similarity=0.148 Sum_probs=65.2
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccccc-----------CcccceeEEEEEcCeEEEEEEcCCCh--------hhHhhHHh
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-----------PTVGSNVEELVYKNIRFEAWDVGGQE--------RLRTSWAT 80 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 80 (183)
.+|+|++|+||||++..- +-.++-.. .+..+.++ -.-+-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999877 44443211 11112222 12355689999921 22344555
Q ss_pred hcc---------CCCEEEEEEeCCCcc-----cH----HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 81 YYR---------GTHAVIVVIDSTDRA-----RI----SIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 81 ~~~---------~~d~ii~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
++. -.+++|+++|+.+.- .. ..++..+.++.... ....||.+++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 542 359999999997442 11 23334444443332 24699999999999864
No 380
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.55 E-value=1.4e-07 Score=61.12 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc---------CcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH---------PTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
-.++++|++|||||||+|.|.+.....+. ........-+.. .....++||||-..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL-PDGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE-TTSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec-CCCcEEEECCCCCc
Confidence 56789999999999999999887432211 011111222333 23567899999443
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.53 E-value=1.6e-06 Score=64.87 Aligned_cols=110 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc------cCCc----ccc------------cCcccceeEEEEE---------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH------LGEV----VTT------------HPTVGSNVEELVY--------------- 58 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~------~~~~----~~~------------~~~~~~~~~~~~~--------------- 58 (183)
+...|+++|++|+||||++.+++ +... ..+ ....++.+.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999998885 2111 001 0111121111110
Q ss_pred --cCeEEEEEEcCCChhhHh----hHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 59 --KNIRFEAWDVGGQERLRT----SWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 59 --~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
.+..+.++||+|...... ....+ ..+.+.+++|+|++-...-......+.... .+.-+|.||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~-------~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSV-------DVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhcc-------CCcEEEEECccC
Confidence 256899999999543322 22222 235688999999976543322333333221 345788999997
Q ss_pred CC
Q 030113 131 KD 132 (183)
Q Consensus 131 ~~ 132 (183)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 53
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.52 E-value=4.7e-07 Score=66.99 Aligned_cols=98 Identities=20% Similarity=0.188 Sum_probs=58.9
Q ss_pred hhhHhhHHhhccCCC-EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCcc-
Q 030113 72 ERLRTSWATYYRGTH-AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSI- 148 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~- 148 (183)
+.+...... +...+ .+++|+|+.+.. ......+.+.. .+.|+++|+||+|+.+.. ...++.+.+.....
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHh
Confidence 345554443 44445 999999998753 12223333332 257899999999996432 22233222211100
Q ss_pred -CCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 149 -KNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 149 -~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......++.+||+++.|++++++.+.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112589999999999999999997653
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.50 E-value=2.3e-07 Score=68.53 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-----ccccCcccceeEEEEEc-CeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-----VTTHPTVGSNVEELVYK-NIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~ 72 (183)
.++.++|.+|+|||||+|++.+... ...+...+++....... ...+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCC
Confidence 5899999999999999999987532 22333344433332222 2346799999943
No 384
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.50 E-value=7.3e-07 Score=59.60 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=60.2
Q ss_pred eEEEEEEcCCChhhHh------hHHhhccC---CCEEEEEEeCC---CcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 61 IRFEAWDVGGQERLRT------SWATYYRG---THAVIVVIDST---DRARI-SIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~------~~~~~~~~---~d~ii~v~d~~---~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
-.+.++|+|||-.... ....+++. --+.+|++|.. +...| ......+..+.. ...|-|=|.+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 4788999999755321 12222222 23667777764 22111 122222222222 35888999999
Q ss_pred CCCCCCCCHHHHHhhcCcC---------------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 128 QDLKDAMTPAEITDALSLH---------------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 128 ~Dl~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+|+......+++...+.-. .....-+.|.+....+.++++.++..|-..+
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9987654434433333210 1112345567777667777777776665544
No 385
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.49 E-value=6.8e-08 Score=70.16 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=53.4
Q ss_pred hhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccce-eEEEEEcCeEEEEEEcCC
Q 030113 3 ALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN-VEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g 70 (183)
+++..|-++...++++.|.+||.||+||||+||.|-....+...|..|.+ .+.+..-..++-++|+||
T Consensus 293 ~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 293 QLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred HHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence 35666777777899999999999999999999999888888877766643 233322345788899999
No 386
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.48 E-value=2.9e-06 Score=61.43 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=58.0
Q ss_pred eEEEEEEcCCChhhHhhHHhhcc--------CCCEEEEEEeCCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATYYR--------GTHAVIVVIDSTDRARISI-MKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
....++.+.|-..=......++. ..|+++-|+|+........ +...+...+... =++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 45677788875443333333322 3488999999976543222 344444444432 28999999998
Q ss_pred CCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 132 DAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+......+.+.+.. .++.++++.+|. ......+++
T Consensus 159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEELEALEARLRK---LNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHHHHHHHHHHHH---hCCCCeEEEccc-cCCCHHHhh
Confidence 76544444444332 346677888886 333343443
No 387
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.43 E-value=3e-07 Score=68.82 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee-EEEEEcCeEEEEEEcCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV-EELVYKNIRFEAWDVGG 70 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g 70 (183)
.+.|+++|-|||||||.||+|.|......+.|.|-+. ..-..-.-.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 5999999999999999999999999888777777332 22222345678899999
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.41 E-value=4.8e-07 Score=66.92 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC-----cccccCcccceeEEEEEc-CeEEEEEEcCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE-----VVTTHPTVGSNVEELVYK-NIRFEAWDVGGQ 71 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~ 71 (183)
..++.++|.+|+|||||+|++.+.. ....++..|++.....+. .....++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence 3579999999999999999998543 122333444443333321 123479999995
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.40 E-value=5.2e-06 Score=56.11 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCChhhHh----hHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRT----SWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.++||+|...... .+..++ ...+-+++|++++....-......+..... +--++.||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG-------IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS-------TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc-------CceEEEEeecCCCC
Confidence 46799999999543221 222221 256889999999865432222222222221 12577999997543
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.40 E-value=4.5e-06 Score=53.90 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=36.3
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
+..+.++||+|.... ...++..+|.++++..+.-.+.+ .-....++.. --++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y---~~~k~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDI---QAIKAGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHH---HHhhhhHhhh------cCEEEEeCCC
Confidence 468999999885432 23478889999999987633222 2211222221 1388999987
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=3.8e-06 Score=61.96 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
..++|.+++|+++..+-....+...+..+.. .+++.++|+||+||.+. ..+..+.+... ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744333333333333322 35777999999999754 11222222211 345679999999
Q ss_pred cCCCHHHHHHHHH
Q 030113 162 TGDGLVDGLEWIS 174 (183)
Q Consensus 162 ~~~gi~~~~~~i~ 174 (183)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.36 E-value=4.1e-06 Score=60.78 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=47.3
Q ss_pred eEEEEEEcCCChhhHhhHHhhcc--------CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSWATYYR--------GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
....++.+.|...-......++. ..++++.|+|+.+......-.......+... =++++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678888887655444444322 2489999999965422111111121222221 289999999876
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.. ..+.+.+.. -++.++++.++
T Consensus 165 ~~--~~~~~~l~~---lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA--EKLRERLAR---INARAPVYTVV 186 (318)
T ss_pred HH--HHHHHHHHH---hCCCCEEEEec
Confidence 42 334333322 23455666554
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=9.5e-07 Score=63.31 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCc-----cc--ce--eEEEEEcCeEEEEEEcCCChhh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPT-----VG--SN--VEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~-----~~--~~--~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
..++++|++|+|||||+|.+.+......... .| ++ ...+.... ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 5789999999999999999988654332111 01 11 12222221 3368999997654
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.32 E-value=4.8e-06 Score=60.42 Aligned_cols=138 Identities=24% Similarity=0.246 Sum_probs=73.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc----------ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV----------TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~----------~~~------------~~~~~~~~~~----------------- 56 (183)
+...++++|++|+||||++..++..-.. ... ...+..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999888532100 000 0011111111
Q ss_pred EEcCeEEEEEEcCCChhhHh----hHHhhc--------cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 57 VYKNIRFEAWDVGGQERLRT----SWATYY--------RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~----~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
...+..+.++||||...... ....+. ...+..++|+|++... +.+.. ........ .+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~----~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV----GLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC----CCCEEE
Confidence 01346899999999543211 111111 2467889999998542 22222 22222111 234789
Q ss_pred EeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 125 ANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 125 ~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
.||.|.....- ...+... .+.|+..++ +|++++.+-
T Consensus 266 lTKlD~t~~~G~~l~~~~~--------~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADE--------LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHH--------HCCCEEEEe--CCCChhhCc
Confidence 99999643321 1111111 244677776 677776653
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.31 E-value=1.5e-06 Score=62.63 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCccc---------ceeEEEEEcCeEEEEEEcCCChh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVG---------SNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
...++++|++|+|||||+|++.+........... .....+.... ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3468899999999999999998765433221111 1112222222 347899999653
No 396
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.28 E-value=5.6e-06 Score=58.84 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred cCeEEEEEEcCCChhhHhhH----Hh---hc-----cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEe
Q 030113 59 KNIRFEAWDVGGQERLRTSW----AT---YY-----RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~----~~---~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~n 126 (183)
.+..+.++||||........ .. .. ..+|..++|+|++... +.. .....+.... .+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 34689999999965422221 11 11 1379999999997542 222 2223322211 23578999
Q ss_pred CCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 127 KQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 127 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
|.|.....- ...+.... +.|+..++ +|++++.+-.
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCcc
Confidence 999754322 12222221 34566666 6777766543
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=5e-06 Score=61.30 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---------ccC---------------cccceeEEEE-----------EcCe
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---------THP---------------TVGSNVEELV-----------YKNI 61 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---------~~~---------------~~~~~~~~~~-----------~~~~ 61 (183)
.-.++++|++|+||||++.+|....... ... ..++...... ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4577899999999999999886421100 000 1122221111 1356
Q ss_pred EEEEEEcCCChhhHhh---HHhhc---cCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCCC
Q 030113 62 RFEAWDVGGQERLRTS---WATYY---RGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQH-SVVLIFANKQDLKD 132 (183)
Q Consensus 62 ~~~~~D~~g~~~~~~~---~~~~~---~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~~ 132 (183)
.+.++||+|....... ....+ ....-.++|++++... .+......+..........- .+-=+|.||.|-..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8999999995532221 11222 2345668899987543 33444444444322110000 12357789999654
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=6.7e-06 Score=60.76 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=60.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc----------cccc------------CcccceeEEEEE--------------c
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV----------VTTH------------PTVGSNVEELVY--------------K 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~----------~~~~------------~~~~~~~~~~~~--------------~ 59 (183)
+...|+++|++|+||||++.+|+..-. ..+. ...++....... .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 346899999999999999998853110 0000 011111111100 1
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|.... ...+...+ ...+.+++|+|++-.. .........+-. . ..--+++||.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-~----~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-I----HIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-C----CCCEEEEEcccCCC
Confidence 358999999995332 12223333 2357889999985331 222333333221 1 22368899999754
No 399
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=2e-06 Score=61.00 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
..+++|.+|+|||||+|+|.+..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 55799999999999999998744
No 400
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=8.6e-06 Score=56.90 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=73.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEE--c--CeEEEEEEcCCC-------hh
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVY--K--NIRFEAWDVGGQ-------ER 73 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~--~--~~~~~~~D~~g~-------~~ 73 (183)
.+....-.++|+-+|..|.|||||+..+.+-.+... .+.+......+.. . ..++.++||.|- +.
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S 114 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS 114 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc
Confidence 334456779999999999999999999988776432 2333333333333 1 367899999981 11
Q ss_pred h-------HhhHHhh-------------c--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 74 L-------RTSWATY-------------Y--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 74 ~-------~~~~~~~-------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+ ......| + ...++++|.+.++. -++..+......-+. ..+.+|-++-|.|-.
T Consensus 115 yk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 115 YKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 1 1111111 1 23488888888875 345555544444333 246788889999965
Q ss_pred C
Q 030113 132 D 132 (183)
Q Consensus 132 ~ 132 (183)
.
T Consensus 190 s 190 (406)
T KOG3859|consen 190 S 190 (406)
T ss_pred h
Confidence 4
No 401
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=1.9e-05 Score=65.68 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=64.0
Q ss_pred EEEEcCCCCCHHHHHHHhccCCccccc-------CcccceeEEEEEcCeEEEEEEcCCC--------hhhHhhHHhhc--
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTH-------PTVGSNVEELVYKNIRFEAWDVGGQ--------ERLRTSWATYY-- 82 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~-- 82 (183)
-+|||++|+||||++..- +..|+... ...++.... -+-.-.-.++||.|. +.-...|..++
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 469999999999998654 33333211 111101000 112345678899982 22344555442
Q ss_pred -------cCCCEEEEEEeCCCccc---------HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 83 -------RGTHAVIVVIDSTDRAR---------ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 83 -------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+-.++||+.+|+++.-. ...++.-+.++.... ....||.+++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEecccccc
Confidence 34599999999974421 122333344443332 24699999999999865
No 402
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.15 E-value=1e-05 Score=53.96 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=42.1
Q ss_pred eEEEEEEcCCChhhHhhH-----HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSW-----ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
....++.+.|...-.... ....-..+.++.|+|+............+...+.... ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 567888988855433331 1112245899999999765444455566666665533 8999999987554
No 403
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.14 E-value=1.3e-06 Score=63.60 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g 70 (183)
++.++++|+|-|++||||+||.|.....+...++.|++...-.. -+..+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence 57899999999999999999999988887777777765433222 356788999999
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.14 E-value=1.2e-05 Score=60.70 Aligned_cols=110 Identities=26% Similarity=0.235 Sum_probs=59.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC------c----ccc-cC-----------cccceeEEEE---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE------V----VTT-HP-----------TVGSNVEELV--------------- 57 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~------~----~~~-~~-----------~~~~~~~~~~--------------- 57 (183)
.....|+++|++|+||||.+..++..- . ... .+ ..+.......
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346788999999999999988774210 0 000 00 0111111000
Q ss_pred EcCeEEEEEEcCCChhhHhh----HHh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTS----WAT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~----~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
.....+.++||+|....... ... ....+|.+++|+|++.... .......+.... ...-+|.||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l----~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV----GIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC----CCCEEEEecccCC
Confidence 01347899999996543221 111 2346789999999976532 222222221111 1235778999964
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.13 E-value=3.2e-05 Score=51.28 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=38.2
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++|++|.... ......+. ...+.+++|+|+....+ .......+..... ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~----~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG----ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC----CCEEEEECCcCCC
Confidence 456889999996432 11112111 34899999999875432 2233333332211 2467779999754
No 406
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.12 E-value=3.2e-05 Score=56.77 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=49.2
Q ss_pred eEEEEEEcCCChhhHhhHHhhc-------cCCCEEEEEEeCCCccc--H--------------------HHHHHHHHHHh
Q 030113 61 IRFEAWDVGGQERLRTSWATYY-------RGTHAVIVVIDSTDRAR--I--------------------SIMKDELFRLL 111 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~~~~~~~ 111 (183)
....++++.|...-......+. -..|+++.|+|+.+... + ..+...+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4677889998766544444331 13489999999974311 0 00112222222
Q ss_pred CCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 112 GHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 112 ~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
... =++++||+|+.+......+.+.+... .....++++++
T Consensus 173 ~~A------D~IvlnK~Dl~~~~~l~~~~~~l~~~--~~~~a~i~~~~ 212 (341)
T TIGR02475 173 ACA------DLVILNKADLLDAAGLARVRAEIAAE--LPRAVKIVEAS 212 (341)
T ss_pred HhC------CEEEEeccccCCHHHHHHHHHHHHHh--CCCCCEEEEcc
Confidence 221 28999999998765544554444321 11233566554
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=98.12 E-value=2.7e-05 Score=58.76 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=36.2
Q ss_pred CeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.++||+|.... ....... ....+.+++|+|+..... .......+.... ...-+|.||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~----~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL----GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 467999999995432 1111111 125688899999875432 223333332211 1235677999953
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=1.7e-05 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc----ccc-----c---------------CcccceeEEE-----------EEcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV----VTT-----H---------------PTVGSNVEEL-----------VYKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~----~~~-----~---------------~~~~~~~~~~-----------~~~~ 60 (183)
..-.++++|++|+||||++.+|.+... ... . ...++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999998865310 000 0 0111111100 1124
Q ss_pred eEEEEEEcCCChhhH----hhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLR----TSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
..+.++||+|..... .....+. ....-.++|+|++.. ...+......+. .. ..-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~-~~----~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ-GH----GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc-CC----CCCEEEEEeeeCCC
Confidence 578999999955422 2222221 224567899998743 223333333321 11 22367899999654
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.11 E-value=2e-05 Score=58.17 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=58.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccc-----------------------ceeEEE-----------EEcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG-----------------------SNVEEL-----------VYKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~-----------------------~~~~~~-----------~~~~ 60 (183)
+.-.|+++||+|+||||-+.+|+.... ......++ +...-+ ....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 366788999999999999888754332 11111111 111110 1125
Q ss_pred eEEEEEEcCCChhh----HhhHHhhccCC--CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERL----RTSWATYYRGT--HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~----~~~~~~~~~~~--d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++.++||.|.... ...+..++... .-..+|++++.. ...+..-+..+... ..-=+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC
Confidence 68999999995433 23334444332 445567777643 22333333333211 11247789999654
No 410
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.06 E-value=9.5e-05 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.-.+-|.|+||..+|||||+.++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 356889999999999999999994
No 411
>PRK13695 putative NTPase; Provisional
Probab=98.05 E-value=9.9e-05 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.430 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998643
No 412
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.02 E-value=2e-05 Score=41.51 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=27.3
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
-.++++|++|++..+ +.+.....+..+.... .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 358999999999765 4555556666665442 4799999999998
No 413
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.5e-05 Score=60.17 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC------------cccc---cCcccceeEEE--------------------EE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE------------VVTT---HPTVGSNVEEL--------------------VY 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~------------~~~~---~~~~~~~~~~~--------------------~~ 58 (183)
..+-.++.||.+...|||||...+.... +..+ ....++++..- ..
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3456789999999999999998885432 1111 11111221110 11
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
.+.-+.++|.||+.+|.+..-..++-.|+.++|+|..+.-.... ...+.+.+... +.-+++.||+|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~ER----IkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAER----IKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHhh----ccceEEeehhhH
Confidence 24678999999999999999999999999999999876643322 12333333332 334688999994
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.5e-05 Score=59.15 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=58.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC--------Ccc--c--cc------------CcccceeEEEE-----------EcC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG--------EVV--T--TH------------PTVGSNVEELV-----------YKN 60 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~--------~~~--~--~~------------~~~~~~~~~~~-----------~~~ 60 (183)
..-.++++|++|+||||++.+|... ... . .+ ...++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3467889999999999999887531 110 0 00 01111111111 125
Q ss_pred eEEEEEEcCCChhhHhh----HH--hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTS----WA--TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
..+.++||+|....... .. .... ....++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 68999999995432211 11 1111 2356777777642 3333333333321 135679999999743
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.01 E-value=5.8e-05 Score=44.71 Aligned_cols=69 Identities=20% Similarity=0.132 Sum_probs=45.4
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh-HHhhccCCCEEEEEEeCCCc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS-WATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~ 97 (183)
+++.|.+|+||||+...+...-.. .+.....+. .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999998887543211 112221121 8899999986543321 23456678999999988754
No 416
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=5.1e-05 Score=55.97 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=19.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..-.++++|++|+||||++.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999998885
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.98 E-value=5.8e-05 Score=56.93 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=36.5
Q ss_pred CeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.++||+|.... ......+ .-..+.+++|+|+..... .......+.... ...-+|.||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 457899999995322 1222111 235789999999875532 222223322111 1235778999953
No 418
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.97 E-value=3.5e-05 Score=52.67 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=38.1
Q ss_pred EEEEEEcC-CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCC-CeEEEEEeCCCCC
Q 030113 62 RFEAWDVG-GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQH-SVVLIFANKQDLK 131 (183)
Q Consensus 62 ~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~vilv~nK~Dl~ 131 (183)
.+.++||- |-++|.+ ...+++|.+|.|+|++.. ++... ....++... .+ .++.+|.||+|-.
T Consensus 135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHH---hCCceEEEEEeeccch
Confidence 56666664 4555443 234678999999999853 33222 222333222 23 7899999999954
No 419
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=1.7e-05 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
--++|.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999997653
No 420
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.94 E-value=1.3e-05 Score=56.83 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=38.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCc-----ccccCcccceeEE---EEE-cCeEEEEEEcCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEV-----VTTHPTVGSNVEE---LVY-KNIRFEAWDVGG 70 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~-----~~~~~~~~~~~~~---~~~-~~~~~~~~D~~g 70 (183)
..++++.|+|-||+|||||+|++..... .......|++... +.+ ....+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 4679999999999999999998854332 2233444443322 222 456689999999
No 421
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=0.0001 Score=52.58 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCC--------------
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQ-------------- 71 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------------- 71 (183)
...+......+...++++|++|.|||++++++.....+..... . ..+.+..+..|..
T Consensus 50 ~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~--------~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 50 EELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-A--------ERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-C--------ccccEEEEecCCCCChHHHHHHHHHHh
Confidence 4455666677789999999999999999999987553322111 0 1234555555531
Q ss_pred ----------hhhHhhHHhhccCCCEEEEEEeCCCc---ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 72 ----------ERLRTSWATYYRGTHAVIVVIDSTDR---ARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 72 ----------~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
.+........++....-++++|=-.. .+....+..+..+....+...+|++.+|++-
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 12223334556777888899985321 1222222222222222233569999998764
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.91 E-value=0.00033 Score=44.56 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=25.3
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
............+++.|++|+|||++++.+...-
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3333334455678899999999999999997653
No 423
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.91 E-value=8.2e-05 Score=55.30 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----c------ccc------------cCcccceeEEEE--------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----V------VTT------------HPTVGSNVEELV-------------- 57 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~------~~~------------~~~~~~~~~~~~-------------- 57 (183)
.+++..|+++|-.|+||||.+-+|+..- . ... ...+++.+....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 4567889999999999999987774210 0 000 011222222111
Q ss_pred ---EcCeEEEEEEcCCChhhHhhH----Hh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 58 ---YKNIRFEAWDVGGQERLRTSW----AT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 58 ---~~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
.....+.++||+|........ .. -.-+.|-+++|+|+.-++.-.+....+.+.+.. .=+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 024689999999954443322 11 134679999999998876555555555555433 24677888
Q ss_pred CCC
Q 030113 129 DLK 131 (183)
Q Consensus 129 Dl~ 131 (183)
|-.
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 864
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00021 Score=53.31 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc---------c-----cc------------cCcccceeEEEE-----------Ec
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV---------V-----TT------------HPTVGSNVEELV-----------YK 59 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~---------~-----~~------------~~~~~~~~~~~~-----------~~ 59 (183)
...|+++|++|+||||.+.+++..-. . .+ ....++...... ..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45788999999999999887753110 0 00 011122111111 13
Q ss_pred CeEEEEEEcCCChhhH----hhHHhhccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLR----TSWATYYRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|..... .....++.. ..-.++|+|++.. ...+...+..+... .+--+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 5789999999954321 122333332 2368899999865 33344444443211 23468899999643
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=3.7e-05 Score=61.52 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc------------cc------------CcccceeEEE-----------EEcCeE
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT------------TH------------PTVGSNVEEL-----------VYKNIR 62 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~------------~~------------~~~~~~~~~~-----------~~~~~~ 62 (183)
-.++++|+.|+||||.+.+++...... +. ...++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 467899999999999999887532100 00 0111111100 112458
Q ss_pred EEEEEcCCChh----hHhhHHhh--ccCCCEEEEEEeCCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 63 FEAWDVGGQER----LRTSWATY--YRGTHAVIVVIDSTDR-ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 63 ~~~~D~~g~~~----~~~~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+.++||+|... ........ ....+-.++|+|++.. +.+.++...+...... .+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence 99999999322 22222221 2345678899998743 3344444444332110 12357899999653
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.2e-05 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-++++|++|||||||++.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999987554
No 427
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=8.1e-05 Score=56.29 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=36.9
Q ss_pred CeEEEEEEcCCChhhH----hhHHhhcc---CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLR----TSWATYYR---GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++||+|..... .....++. ...-.++|++++.. ...+...+..+- .. .+--++.||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~----~~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL----PLDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC----CCCEEEEecccccc
Confidence 4689999999964332 22333333 23467788888643 223333333331 11 12368899999743
No 428
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=54.20 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCChhhH------hhHHhhccCCCEEEEEEeCC------CcccHHHHHH-HHHHHhCCCCCCCCeEEEEEe
Q 030113 60 NIRFEAWDVGGQERLR------TSWATYYRGTHAVIVVIDST------DRARISIMKD-ELFRLLGHEDLQHSVVLIFAN 126 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~------~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~n 126 (183)
..++.++|+|||-++. ..+...+++.+.-+.++... +|..|-.... .+..++ + ...|=+=|..
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl-~---melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML-H---MELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH-h---hcccchhhhh
Confidence 4578999999975532 22334455566655555543 3433322221 111111 1 2356677889
Q ss_pred CCCCC
Q 030113 127 KQDLK 131 (183)
Q Consensus 127 K~Dl~ 131 (183)
|+|+.
T Consensus 172 K~Dl~ 176 (290)
T KOG1533|consen 172 KADLL 176 (290)
T ss_pred HhHHH
Confidence 99974
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.3e-05 Score=49.85 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999654
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=7.2e-05 Score=54.74 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=56.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--------------cc-----c---ccCcccceeE-E----------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--------------VV-----T---THPTVGSNVE-E---------------- 55 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--------------~~-----~---~~~~~~~~~~-~---------------- 55 (183)
.++--|.++|-.|+||||.+.+++... |. + .....++.++ .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 355668899999999999988774211 10 0 0001111111 1
Q ss_pred EEEcCeEEEEEEcCCChhhHh----hHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhC
Q 030113 56 LVYKNIRFEAWDVGGQERLRT----SWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLG 112 (183)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~ 112 (183)
+.-+...+.++||.|..+... .+... .-+.|-+|+|.|++-.+.-......+.....
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 111367899999999543222 22111 2357999999999877654444455555443
No 431
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00014 Score=54.52 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcc-----------cc------------cCcccceeEEE----------EEcCeEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVV-----------TT------------HPTVGSNVEEL----------VYKNIRF 63 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~-----------~~------------~~~~~~~~~~~----------~~~~~~~ 63 (183)
...++++|++|+||||++.+|+..... .. ....+...... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 356889999999999999888642100 00 01111111111 0135688
Q ss_pred EEEEcCCChhh----HhhHHhhcc-----CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 64 EAWDVGGQERL----RTSWATYYR-----GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 64 ~~~D~~g~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.++||+|.... ...+..++. ...-.++|+|++... ..+......+ ... -+--+|.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCC
Confidence 99999995321 122222222 234688999988653 2232222222 211 22368899999643
No 432
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=6.7e-05 Score=53.40 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=57.3
Q ss_pred ccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 82 YRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
..+.|-.++++.+.+|+- ..-+...+... .. .++..++|+||+|+.++..... .+.+ ......+++.+.+|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecC
Confidence 344677777777777753 33333333333 22 4567788899999987654443 1111 122346778999999
Q ss_pred ccCCCHHHHHHHHHHh
Q 030113 161 LTGDGLVDGLEWISQR 176 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~ 176 (183)
+++.|++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999999887654
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=1.5e-05 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|++|+|||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.80 E-value=2.1e-05 Score=42.44 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
..+|.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.79 E-value=0.00013 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.--++++|++|+||||.+.+|+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 35688999999999999998864
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.78 E-value=2e-05 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|+||+||||+..+|+..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999765
No 437
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=2e-05 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00011 Score=52.03 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=61.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-----c-----------------cccCcccceeEEEE--------------Ec
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-----V-----------------TTHPTVGSNVEELV--------------YK 59 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-----~-----------------~~~~~~~~~~~~~~--------------~~ 59 (183)
+.-+++++|++|+||||++..+...-. . ......++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 446999999999999999887743210 0 00011111111100 02
Q ss_pred CeEEEEEEcCCChhh----HhhHHhhc--cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERL----RTSWATYY--RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
+..+.++||+|.... ...+..++ ...+-.++|+|++.. .......+..+-. . .+--++.||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-~----~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-C----CCCEEEEEeecCCC
Confidence 468999999996532 22222322 245778999998633 2233333333321 1 23468899999754
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.77 E-value=2.7e-05 Score=51.30 Aligned_cols=28 Identities=29% Similarity=0.214 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
..-+++|+|++|+|||||+|.+.+-..+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 3457899999999999999999876554
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=2.8e-05 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
-++|+|++|||||||+|.+.+-..+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5789999999999999999665433
No 441
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=4.1e-05 Score=51.76 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++|+||+|||||||++.+.+-+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 334678999999999999999966544
No 442
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.71 E-value=0.00027 Score=42.64 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=47.5
Q ss_pred EEEEc-CCCCCHHHHHHHhccCCcccccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 20 IIIVG-LDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 20 i~viG-~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
|++.| ..|+||||+...+...-.. .+....-+.. ....+.++|+|+..... ....+..+|.++++.+.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~- 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP- 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-
Confidence 56666 5699999998766432111 1111111111 11678999999865432 2366778999999998864
Q ss_pred ccHHHHHHHH
Q 030113 98 ARISIMKDEL 107 (183)
Q Consensus 98 ~s~~~~~~~~ 107 (183)
.++......+
T Consensus 74 ~s~~~~~~~~ 83 (104)
T cd02042 74 LDLDGLEKLL 83 (104)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 443
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00036 Score=50.31 Aligned_cols=111 Identities=23% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------cc------------cCcccceeEEEEE-------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------TT------------HPTVGSNVEELVY------------- 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------~~------------~~~~~~~~~~~~~------------- 58 (183)
..+.+-|+++|-.|+||||-+-+++..-.. .+ ....++....-..
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 346889999999999999998887431100 00 0111122111111
Q ss_pred ----cCeEEEEEEcCCChhhHh----h---HHhhccC-----CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE
Q 030113 59 ----KNIRFEAWDVGGQERLRT----S---WATYYRG-----THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL 122 (183)
Q Consensus 59 ----~~~~~~~~D~~g~~~~~~----~---~~~~~~~-----~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi 122 (183)
.+..+.++||+|.-+... . +...++. .+-+++++|++-++.=-+....+...... -=
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ce
Confidence 367899999999433211 1 1122222 24588899998775433334455555432 25
Q ss_pred EEEeCCCCC
Q 030113 123 IFANKQDLK 131 (183)
Q Consensus 123 lv~nK~Dl~ 131 (183)
++.||.|..
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 889999953
No 444
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.70 E-value=3.9e-05 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4678999999999999999987754
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.68 E-value=3.5e-05 Score=49.30 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHhcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~ 39 (183)
|+++|++|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999863
No 446
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.66 E-value=0.00056 Score=47.45 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=27.8
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+..+-....+..++++.|+.|+||||++++++..
T Consensus 41 ~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 41 ENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 33444455677889999999999999999999754
No 447
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.66 E-value=4.8e-05 Score=52.06 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+...|+|.|++|||||||++.+...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999988653
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=5.3e-05 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999654
No 449
>PRK06547 hypothetical protein; Provisional
Probab=97.63 E-value=9.2e-05 Score=49.03 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=26.7
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
............|+|.|++||||||+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334455678889999999999999999999654
No 450
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.62 E-value=5.3e-05 Score=51.78 Aligned_cols=27 Identities=33% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+++..-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999653
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.60 E-value=5.9e-05 Score=49.73 Aligned_cols=132 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcC--eEEEEEEc-CCC----------------------hh
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKN--IRFEAWDV-GGQ----------------------ER 73 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~-~g~----------------------~~ 73 (183)
+|++.|++|+||||++.+++..-.....+..|+....+..++ .-+.+.|. .|. +.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 689999999999999999864321112233333333333222 23444444 220 11
Q ss_pred hHh----hHHhhccCCCEEEEEEeCCCccc--HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc
Q 030113 74 LRT----SWATYYRGTHAVIVVIDSTDRAR--ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS 147 (183)
Q Consensus 74 ~~~----~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~ 147 (183)
+.. .....+..+| ++++|=-.+=. -......+..+++ .++|++.++.+... ..-.+++..
T Consensus 81 fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~~--~~~l~~i~~------ 146 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRSD--NPFLEEIKR------ 146 (168)
T ss_dssp HHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS----SCCHHHHHT------
T ss_pred HHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCCC--cHHHHHHHh------
Confidence 111 1111123444 77888543311 1223445555554 45888888888731 122233322
Q ss_pred cCCCceEEEEeecccCCCH
Q 030113 148 IKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi 166 (183)
..++.+++++..+.+-+
T Consensus 147 --~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 --RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp --TTTSEEEE--TTTCCCH
T ss_pred --CCCcEEEEeChhHHhhH
Confidence 22345888876665543
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.59 E-value=3.8e-05 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999654
No 453
>PF05729 NACHT: NACHT domain
Probab=97.59 E-value=0.0005 Score=44.92 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++|.|++|+||||++.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 678999999999999988653
No 454
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=5.3e-05 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|+||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999976
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.58 E-value=6.9e-05 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHhccCCc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~ 42 (183)
++++||+|||||||++.++|-+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57999999999999999987554
No 456
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.56 E-value=0.00011 Score=52.67 Aligned_cols=31 Identities=32% Similarity=0.201 Sum_probs=24.1
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
|......+..+-|+|.|++||||||+++.+.
T Consensus 53 f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 53 FLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4333334567899999999999999998764
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=97.55 E-value=7.3e-05 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987543
No 458
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.54 E-value=0.00042 Score=42.07 Aligned_cols=97 Identities=15% Similarity=0.025 Sum_probs=53.2
Q ss_pred cCCCCCHHHHHHHhccCCcccccCcccceeEEEEE---cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH
Q 030113 24 GLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY---KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI 100 (183)
Q Consensus 24 G~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (183)
+..|+||||+...+...-.... +....-++. .+..+.++|+|+..... ....+..+|.++++.+.+. .++
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~ 79 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSI 79 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHH
Confidence 6778999998766632211110 000000000 11288999999865432 3356788999999998764 344
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEEEeC
Q 030113 101 SIMKDELFRLLGHEDLQHSVVLIFANK 127 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~vilv~nK 127 (183)
......+..+..........+.+|+|+
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 80 RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 444444444333221113456677775
No 459
>PHA00729 NTP-binding motif containing protein
Probab=97.53 E-value=0.00015 Score=49.81 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+....+....-.+|+|.|+||+|||+|+.++...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444455555579999999999999999988653
No 460
>PRK06217 hypothetical protein; Validated
Probab=97.53 E-value=7.8e-05 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998644
No 461
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.52 E-value=6.9e-05 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999755
No 462
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.51 E-value=7.2e-05 Score=49.56 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=29.1
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~ 135 (183)
|++++|+|+.++.+- ....+...+. ....++|+++|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~--~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGC--RCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCC--CCHHHHHHHH-hccCCCCEEEEEehhhcCCHHH
Confidence 789999999876321 1122222211 1113589999999999975433
No 463
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00047 Score=52.79 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++.=||+|+|++||||||+++.++.
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=9.2e-05 Score=46.80 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
..++++|++|+||||++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999976644
No 465
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.51 E-value=0.00055 Score=43.71 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccH
Q 030113 22 IVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARI 100 (183)
Q Consensus 22 viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~ 100 (183)
.-|.+|+||||+.-.+...-......+.-+... ....-...+.++|+|+... ......+..+|.++++.+.+. .++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hHH
Confidence 457899999999766532211000000000000 0000016789999997432 233466888999999999864 334
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 101 SIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
......+..+.... ...++.+|+|+.+-
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 33333333332221 34567899999973
No 466
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.50 E-value=8.8e-05 Score=47.41 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998654
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.50 E-value=9.3e-05 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999996653
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.50 E-value=0.00011 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-|+|.|.+|+|||||.+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999653
No 469
>PRK14530 adenylate kinase; Provisional
Probab=97.49 E-value=0.0001 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|+|||||||+.+.|+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 470
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.49 E-value=7.9e-05 Score=51.70 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=23.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-...++++|+|++|||||+|+..++..
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 33456789999999999999998887643
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=9.6e-05 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999765
No 472
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=0.00013 Score=48.61 Aligned_cols=27 Identities=33% Similarity=0.278 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.-.++++|+.|+|||||++.+++-..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 345788999999999999999987643
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.47 E-value=0.0001 Score=46.08 Aligned_cols=21 Identities=38% Similarity=0.385 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988654
No 474
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.47 E-value=0.00011 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3467899999999999999998764
No 475
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=8.5e-05 Score=50.24 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.++|||+|||||||++.+.
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4899999999999998774
No 476
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.47 E-value=0.0015 Score=46.56 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=17.8
Q ss_pred EEEcCCCCCHHHHHHHhccCC
Q 030113 21 IIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 21 ~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.|.-|+|||||+|.++.+.
T Consensus 61 IITGyLGaGKtTLLn~Il~~~ 81 (391)
T KOG2743|consen 61 IITGYLGAGKTTLLNYILTGQ 81 (391)
T ss_pred EEEecccCChHHHHHHHHccC
Confidence 477999999999999997543
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.46 E-value=0.00011 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~ 38 (183)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3457899999999999999975
No 478
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.00012 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++|+|+.|+|||||++.+.+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 445788999999999999998863
No 479
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00011 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+|+++|.+|+||||+..+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988654
No 480
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0001 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=-++++|++|||||||+|.+.+-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 34679999999999999999764
No 481
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00013 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHhccCCcc
Q 030113 20 IIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
++++||+||||||+++.++|-+.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 579999999999999999876544
No 482
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.44 E-value=0.00015 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-.|+|.|++|+||||+++.++..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhh
Confidence 4678999999999999999999753
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.44 E-value=0.00012 Score=50.32 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++++|++|+|||||++.+++-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999998764
No 484
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.43 E-value=0.00013 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|+.|+|||||++.+++..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00013 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998764
No 486
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.43 E-value=0.00017 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.143 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998864
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.43 E-value=0.0001 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++||||||+++.++..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.42 E-value=0.00014 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+.+-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998764
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.42 E-value=0.00013 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~ 38 (183)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999997
No 490
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00018 Score=49.20 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+..-|+|+|++|+|||||++++...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345667788999999999999999643
No 491
>PRK13949 shikimate kinase; Provisional
Probab=97.42 E-value=0.00012 Score=48.37 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|+|++|+||||+.+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 492
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00012 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|++|+|||||++.+++-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 493
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00012 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-++|+||.|+|||||+..+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999883
No 494
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.41 E-value=0.00014 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++|+|+.|+|||||++.+++-.
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999998764
No 495
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.41 E-value=0.00014 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|+.|+|||||++.+++..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998764
No 496
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00014 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.195 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.=.++|+|+.|+|||||++.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33457899999999999999998864
No 497
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.41 E-value=0.00011 Score=49.83 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 498
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00013 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 499
>PRK05439 pantothenate kinase; Provisional
Probab=97.40 E-value=0.00024 Score=51.31 Aligned_cols=33 Identities=27% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 7 KFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 7 ~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+........+-|+|.|++||||||+++.+..
T Consensus 76 ~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 76 QFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444556789999999999999999988854
No 500
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.40 E-value=0.00015 Score=49.76 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.-.++++|+.|+|||||++.+++..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33467899999999999999998764
Done!