Query 030113
Match_columns 183
No_of_seqs 154 out of 1823
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 13:56:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 3E-39 1E-43 216.3 20.6 181 1-182 1-181 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 5.2E-39 1.8E-43 214.3 19.8 180 1-180 1-181 (183)
3 2x77_A ADP-ribosylation factor 100.0 6.3E-39 2.1E-43 215.0 19.6 181 1-181 3-186 (189)
4 1ksh_A ARF-like protein 2; sma 100.0 1.2E-37 4.2E-42 208.2 22.3 178 1-180 3-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 5.6E-38 1.9E-42 210.9 20.1 175 6-180 18-192 (192)
6 1fzq_A ADP-ribosylation factor 100.0 5.1E-37 1.8E-41 204.4 21.7 167 15-181 14-180 (181)
7 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-36 4.4E-41 200.5 22.2 167 15-181 5-171 (171)
8 1r8s_A ADP-ribosylation factor 100.0 8.6E-37 2.9E-41 200.1 20.3 163 18-180 1-163 (164)
9 1m2o_B GTP-binding protein SAR 100.0 4.8E-36 1.7E-40 201.2 20.7 165 13-177 19-190 (190)
10 1zd9_A ADP-ribosylation factor 100.0 8.9E-36 3E-40 199.6 21.2 169 13-181 18-187 (188)
11 2h17_A ADP-ribosylation factor 100.0 6.4E-36 2.2E-40 199.1 19.5 164 14-177 18-181 (181)
12 4dkx_A RAS-related protein RAB 100.0 7.9E-38 2.7E-42 213.0 9.9 162 13-180 9-177 (216)
13 4bas_A ADP-ribosylation factor 100.0 4.8E-36 1.6E-40 202.4 18.3 171 11-181 11-191 (199)
14 1f6b_A SAR1; gtpases, N-termin 100.0 1.6E-35 5.5E-40 199.8 19.3 165 13-177 21-197 (198)
15 2h57_A ADP-ribosylation factor 100.0 8.6E-35 2.9E-39 195.0 19.7 167 14-180 18-188 (190)
16 3o47_A ADP-ribosylation factor 100.0 8.3E-35 2.9E-39 209.8 19.0 168 14-181 162-329 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 2.3E-33 7.8E-38 212.8 20.9 169 14-182 319-487 (497)
18 3q72_A GTP-binding protein RAD 100.0 4.3E-34 1.5E-38 187.6 12.5 159 17-180 2-165 (166)
19 2nzj_A GTP-binding protein REM 100.0 1.7E-33 5.7E-38 186.2 11.5 162 15-181 2-171 (175)
20 3ihw_A Centg3; RAS, centaurin, 100.0 6.8E-33 2.3E-37 184.9 14.4 161 12-181 15-182 (184)
21 1ek0_A Protein (GTP-binding pr 100.0 2.4E-33 8.3E-38 184.5 11.4 158 16-179 2-169 (170)
22 2fg5_A RAB-22B, RAS-related pr 100.0 5.5E-32 1.9E-36 181.7 17.5 165 12-182 18-189 (192)
23 3t5g_A GTP-binding protein RHE 100.0 3.9E-33 1.3E-37 185.5 10.6 163 15-182 4-172 (181)
24 1x3s_A RAS-related protein RAB 100.0 8.3E-32 2.8E-36 181.0 17.2 162 15-181 13-180 (195)
25 3oes_A GTPase rhebl1; small GT 100.0 2.1E-33 7.3E-38 189.8 9.1 166 12-182 19-190 (201)
26 2hup_A RAS-related protein RAB 100.0 9E-32 3.1E-36 181.9 16.7 162 15-182 27-196 (201)
27 3kkq_A RAS-related protein M-R 100.0 8.5E-32 2.9E-36 179.3 16.0 163 13-180 14-183 (183)
28 1c1y_A RAS-related protein RAP 100.0 6.6E-32 2.3E-36 177.2 15.2 159 16-178 2-166 (167)
29 3reg_A RHO-like small GTPase; 100.0 1.8E-32 6.1E-37 184.3 12.5 163 13-182 19-191 (194)
30 3t1o_A Gliding protein MGLA; G 100.0 3.6E-32 1.2E-36 183.1 14.0 163 12-181 9-194 (198)
31 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-32 9.5E-37 180.9 13.1 158 14-180 4-170 (178)
32 2efe_B Small GTP-binding prote 100.0 2.4E-31 8.1E-36 176.8 17.5 164 13-182 8-178 (181)
33 1r2q_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 180.5 11.6 160 14-179 3-169 (170)
34 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-31 4.4E-36 177.5 16.0 164 14-181 4-176 (177)
35 4dsu_A GTPase KRAS, isoform 2B 100.0 5.7E-32 1.9E-36 180.9 14.2 162 15-180 2-167 (189)
36 2fn4_A P23, RAS-related protei 100.0 1.4E-32 4.6E-37 182.7 11.0 164 13-181 5-174 (181)
37 2fh5_B SR-beta, signal recogni 100.0 1.5E-31 5.2E-36 182.3 16.2 164 14-177 4-214 (214)
38 3bc1_A RAS-related protein RAB 100.0 2.5E-31 8.4E-36 178.5 16.7 163 13-180 7-186 (195)
39 3tkl_A RAS-related protein RAB 100.0 5.2E-32 1.8E-36 182.2 13.4 163 14-182 13-182 (196)
40 2atv_A RERG, RAS-like estrogen 100.0 5.4E-32 1.9E-36 182.2 13.2 168 8-181 19-193 (196)
41 1u8z_A RAS-related protein RAL 100.0 1.6E-31 5.5E-36 175.3 15.1 161 15-180 2-168 (168)
42 2hxs_A RAB-26, RAS-related pro 100.0 1.3E-31 4.3E-36 177.7 14.4 164 14-182 3-176 (178)
43 3cbq_A GTP-binding protein REM 100.0 3.6E-32 1.2E-36 183.0 11.8 163 14-181 20-190 (195)
44 2g6b_A RAS-related protein RAB 100.0 4.6E-31 1.6E-35 175.2 16.5 162 14-181 7-176 (180)
45 2f7s_A C25KG, RAS-related prot 100.0 4.2E-31 1.4E-35 180.5 16.3 161 15-180 23-200 (217)
46 2ew1_A RAS-related protein RAB 100.0 5.3E-31 1.8E-35 178.0 16.6 160 15-180 24-190 (201)
47 3dz8_A RAS-related protein RAB 100.0 8.9E-33 3.1E-37 185.4 7.8 162 15-182 21-189 (191)
48 1z0j_A RAB-22, RAS-related pro 100.0 9E-32 3.1E-36 177.0 12.5 159 15-179 4-169 (170)
49 1z0f_A RAB14, member RAS oncog 100.0 7.2E-31 2.4E-35 174.1 16.7 161 13-179 11-178 (179)
50 1g16_A RAS-related protein SEC 100.0 1.1E-31 3.7E-36 176.6 12.6 160 16-181 2-167 (170)
51 1z06_A RAS-related protein RAB 100.0 4.4E-31 1.5E-35 176.8 15.6 162 13-179 16-188 (189)
52 2a9k_A RAS-related protein RAL 100.0 2E-31 7E-36 177.9 13.8 165 12-181 13-183 (187)
53 2il1_A RAB12; G-protein, GDP, 100.0 8.1E-31 2.8E-35 176.0 16.7 161 15-180 24-191 (192)
54 2bov_A RAla, RAS-related prote 100.0 5.9E-31 2E-35 178.3 16.1 164 12-180 9-178 (206)
55 3q3j_B RHO-related GTP-binding 100.0 1.7E-31 5.8E-36 182.1 13.5 162 13-181 23-205 (214)
56 3tw8_B RAS-related protein RAB 100.0 5.4E-32 1.9E-36 179.8 10.8 160 14-180 6-172 (181)
57 3q85_A GTP-binding protein REM 100.0 5.4E-31 1.8E-35 173.2 15.2 159 17-180 2-168 (169)
58 1z2a_A RAS-related protein RAB 100.0 1.6E-31 5.6E-36 175.5 12.7 158 15-179 3-167 (168)
59 1kao_A RAP2A; GTP-binding prot 100.0 2.2E-32 7.4E-37 179.3 8.4 159 16-179 2-166 (167)
60 2g3y_A GTP-binding protein GEM 100.0 1.1E-31 3.6E-36 182.3 12.0 161 15-180 35-204 (211)
61 4djt_A GTP-binding nuclear pro 100.0 1E-31 3.6E-36 183.6 12.0 163 13-181 7-177 (218)
62 1z08_A RAS-related protein RAB 100.0 3.9E-31 1.3E-35 174.0 14.3 159 15-179 4-169 (170)
63 3clv_A RAB5 protein, putative; 100.0 1.1E-30 3.8E-35 176.7 17.0 161 14-182 4-207 (208)
64 2bme_A RAB4A, RAS-related prot 100.0 1.3E-30 4.5E-35 173.9 16.9 160 15-180 8-174 (186)
65 2oil_A CATX-8, RAS-related pro 100.0 1.4E-30 4.7E-35 174.9 17.1 160 15-180 23-189 (193)
66 2gf9_A RAS-related protein RAB 100.0 6.6E-31 2.3E-35 175.9 15.1 160 15-180 20-186 (189)
67 2a5j_A RAS-related protein RAB 100.0 4.5E-31 1.5E-35 177.1 14.3 160 15-180 19-185 (191)
68 2y8e_A RAB-protein 6, GH09086P 100.0 6.2E-32 2.1E-36 179.2 9.9 161 14-180 11-178 (179)
69 2fu5_C RAS-related protein RAB 100.0 2.1E-31 7.3E-36 177.4 12.5 160 15-180 6-172 (183)
70 2p5s_A RAS and EF-hand domain 100.0 3E-31 1E-35 179.0 13.3 163 12-180 23-198 (199)
71 2bcg_Y Protein YP2, GTP-bindin 100.0 1.5E-30 5.1E-35 176.4 16.8 161 15-181 6-173 (206)
72 1zbd_A Rabphilin-3A; G protein 100.0 2.1E-30 7.1E-35 175.3 17.4 159 15-179 6-171 (203)
73 1vg8_A RAS-related protein RAB 100.0 4.7E-31 1.6E-35 178.9 13.9 163 14-180 5-176 (207)
74 1ky3_A GTP-binding protein YPT 100.0 1.3E-31 4.4E-36 178.1 10.9 164 14-181 5-180 (182)
75 2gf0_A GTP-binding protein DI- 100.0 3E-31 1E-35 178.8 12.8 164 13-181 4-173 (199)
76 2ce2_X GTPase HRAS; signaling 100.0 9.8E-31 3.3E-35 171.2 14.5 159 16-179 2-165 (166)
77 3cph_A RAS-related protein SEC 100.0 8.8E-31 3E-35 178.4 14.0 161 14-180 17-183 (213)
78 3con_A GTPase NRAS; structural 100.0 1.3E-30 4.3E-35 174.6 14.5 164 13-181 17-185 (190)
79 4gzl_A RAS-related C3 botulinu 100.0 4.9E-31 1.7E-35 178.6 12.6 166 10-177 23-203 (204)
80 2erx_A GTP-binding protein DI- 100.0 1E-31 3.5E-36 177.0 8.9 161 16-181 2-169 (172)
81 3gj0_A GTP-binding nuclear pro 100.0 2E-31 6.7E-36 182.7 10.6 162 13-181 11-177 (221)
82 3cpj_B GTP-binding protein YPT 100.0 2.2E-31 7.5E-36 182.7 10.6 161 15-181 11-178 (223)
83 2yc2_C IFT27, small RAB-relate 100.0 3.6E-31 1.2E-35 179.5 11.4 161 15-180 18-193 (208)
84 2o52_A RAS-related protein RAB 100.0 1.3E-30 4.6E-35 176.0 14.0 160 15-180 23-189 (200)
85 2fv8_A H6, RHO-related GTP-bin 100.0 2.4E-30 8.3E-35 175.6 15.0 166 14-181 22-202 (207)
86 3c5c_A RAS-like protein 12; GD 100.0 7.9E-31 2.7E-35 175.4 12.3 163 12-180 16-187 (187)
87 2atx_A Small GTP binding prote 100.0 3.6E-30 1.2E-34 173.0 15.3 158 15-179 16-193 (194)
88 1mh1_A RAC1; GTP-binding, GTPa 100.0 3E-30 1E-34 172.1 14.8 166 15-182 3-183 (186)
89 3llu_A RAS-related GTP-binding 100.0 3.6E-31 1.2E-35 178.2 10.5 163 12-177 15-195 (196)
90 1m7b_A RND3/RHOE small GTP-bin 100.0 3.1E-30 1.1E-34 172.0 14.5 160 14-179 4-183 (184)
91 2gco_A H9, RHO-related GTP-bin 100.0 7.1E-30 2.4E-34 172.6 16.2 164 14-179 22-200 (201)
92 2q3h_A RAS homolog gene family 100.0 3.2E-30 1.1E-34 174.1 13.7 162 13-180 16-196 (201)
93 1gwn_A RHO-related GTP-binding 100.0 4.2E-30 1.5E-34 174.1 14.1 160 14-179 25-204 (205)
94 2j1l_A RHO-related GTP-binding 100.0 3.6E-30 1.2E-34 175.6 13.7 165 15-181 32-211 (214)
95 2j0v_A RAC-like GTP-binding pr 100.0 2.7E-30 9.1E-35 175.9 12.6 162 14-181 6-182 (212)
96 3bwd_D RAC-like GTP-binding pr 100.0 2.1E-31 7.3E-36 177.2 6.9 159 14-179 5-181 (182)
97 3l0i_B RAS-related protein RAB 100.0 5E-32 1.7E-36 182.8 3.6 162 15-180 31-197 (199)
98 2zej_A Dardarin, leucine-rich 100.0 1.1E-30 3.7E-35 174.3 9.6 163 17-181 2-180 (184)
99 2cjw_A GTP-binding protein GEM 100.0 1.8E-30 6E-35 174.3 10.0 160 15-179 4-172 (192)
100 2lkc_A Translation initiation 100.0 7.4E-29 2.5E-33 164.3 15.9 163 13-181 4-173 (178)
101 3r7w_B Gtpase2, GTP-binding pr 100.0 5.1E-30 1.7E-34 182.1 10.4 159 19-181 1-176 (331)
102 1svi_A GTP-binding protein YSX 100.0 6.7E-29 2.3E-33 166.8 13.7 159 12-178 18-194 (195)
103 2qu8_A Putative nucleolar GTP- 100.0 2E-28 6.8E-33 168.5 15.3 163 15-180 27-206 (228)
104 3pqc_A Probable GTP-binding pr 100.0 7.2E-29 2.5E-33 166.6 12.7 160 13-179 19-194 (195)
105 3th5_A RAS-related C3 botulinu 99.9 3.8E-31 1.3E-35 179.2 0.0 164 12-177 25-203 (204)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 2.1E-28 7.1E-33 175.0 14.0 162 16-180 2-182 (307)
107 2gj8_A MNME, tRNA modification 100.0 3.9E-28 1.3E-32 160.2 12.3 154 15-180 2-167 (172)
108 2dyk_A GTP-binding protein; GT 100.0 7.3E-28 2.5E-32 157.0 12.6 148 18-177 2-160 (161)
109 2wji_A Ferrous iron transport 100.0 3.9E-27 1.3E-31 154.4 15.3 148 16-178 2-164 (165)
110 3iev_A GTP-binding protein ERA 100.0 2.4E-27 8.3E-32 169.5 14.2 165 12-182 5-185 (308)
111 1wf3_A GTP-binding protein; GT 100.0 5.7E-27 1.9E-31 166.8 15.4 158 15-181 5-175 (301)
112 2wkq_A NPH1-1, RAS-related C3 99.9 7.9E-27 2.7E-31 168.7 15.4 159 15-180 153-331 (332)
113 2cxx_A Probable GTP-binding pr 99.9 3.6E-28 1.2E-32 162.6 7.1 162 18-182 2-187 (190)
114 4dhe_A Probable GTP-binding pr 99.9 3E-27 1E-31 162.0 11.1 165 12-181 24-213 (223)
115 2f9l_A RAB11B, member RAS onco 99.9 5E-27 1.7E-31 158.3 11.4 159 15-179 3-168 (199)
116 3c5h_A Glucocorticoid receptor 99.9 1.8E-27 6.1E-32 166.2 9.5 162 13-178 15-254 (255)
117 3a1s_A Iron(II) transport prot 99.9 3.6E-27 1.2E-31 164.6 9.3 149 15-178 3-166 (258)
118 2wjg_A FEOB, ferrous iron tran 99.9 5.8E-26 2E-30 151.7 14.4 152 15-181 5-171 (188)
119 3iby_A Ferrous iron transport 99.9 3.4E-27 1.2E-31 164.5 7.3 144 18-176 2-164 (256)
120 3i8s_A Ferrous iron transport 99.9 2.9E-27 1E-31 166.5 7.0 150 16-180 2-170 (274)
121 1oix_A RAS-related protein RAB 99.9 7.1E-26 2.4E-30 151.7 11.9 157 15-177 27-190 (191)
122 3b1v_A Ferrous iron uptake tra 99.9 9.4E-27 3.2E-31 163.4 7.8 149 16-179 2-164 (272)
123 3sjy_A Translation initiation 99.9 7.1E-26 2.4E-30 167.5 12.6 164 13-179 4-192 (403)
124 2hjg_A GTP-binding protein ENG 99.9 4.1E-26 1.4E-30 170.3 11.4 159 16-179 174-349 (436)
125 3dpu_A RAB family protein; roc 99.9 3.1E-25 1.1E-29 169.4 13.0 158 14-181 38-210 (535)
126 3gee_A MNME, tRNA modification 99.9 3E-25 1E-29 166.3 12.6 151 16-178 232-397 (476)
127 1cip_A Protein (guanine nucleo 99.9 1.1E-24 3.7E-29 157.7 14.0 134 47-180 179-345 (353)
128 4dcu_A GTP-binding protein ENG 99.9 2E-25 6.9E-30 167.4 10.4 161 15-180 193-370 (456)
129 3ohm_A Guanine nucleotide-bind 99.9 4.1E-24 1.4E-28 152.6 16.3 135 47-181 153-320 (327)
130 2hjg_A GTP-binding protein ENG 99.9 9.4E-25 3.2E-29 163.0 13.1 151 18-180 4-166 (436)
131 3k53_A Ferrous iron transport 99.9 7.3E-24 2.5E-28 149.2 16.5 151 16-180 2-167 (271)
132 1nrj_B SR-beta, signal recogni 99.9 2.2E-26 7.5E-31 157.2 3.5 117 14-135 9-137 (218)
133 1lnz_A SPO0B-associated GTP-bi 99.9 3.6E-25 1.2E-29 159.6 10.0 159 18-182 159-333 (342)
134 1s0u_A EIF-2-gamma, translatio 99.9 5.2E-24 1.8E-28 157.8 16.3 161 14-179 5-198 (408)
135 2e87_A Hypothetical protein PH 99.9 5.7E-24 2E-28 155.0 15.8 158 15-179 165-336 (357)
136 1mky_A Probable GTP-binding pr 99.9 2.5E-24 8.6E-29 160.8 13.7 150 18-179 2-166 (439)
137 1xzp_A Probable tRNA modificat 99.9 2.1E-24 7.1E-29 161.9 12.9 150 16-178 242-404 (482)
138 1ega_A Protein (GTP-binding pr 99.9 4.8E-24 1.6E-28 152.0 13.9 159 15-181 6-177 (301)
139 3qq5_A Small GTP-binding prote 99.9 8.7E-25 3E-29 161.4 10.0 154 14-179 31-196 (423)
140 3tr5_A RF-3, peptide chain rel 99.9 1.7E-23 5.7E-28 158.7 16.1 113 16-133 12-149 (528)
141 1wb1_A Translation elongation 99.9 4.3E-24 1.5E-28 160.8 12.7 160 14-178 16-188 (482)
142 1kk1_A EIF2gamma; initiation o 99.9 8.4E-24 2.9E-28 156.8 13.6 162 13-179 6-200 (410)
143 4dcu_A GTP-binding protein ENG 99.9 2.2E-24 7.7E-29 161.8 10.5 161 8-180 14-186 (456)
144 1zcb_A G alpha I/13; GTP-bindi 99.9 2.2E-23 7.5E-28 151.3 15.1 132 48-179 188-353 (362)
145 3geh_A MNME, tRNA modification 99.9 7.1E-24 2.4E-28 158.4 12.5 152 16-181 223-386 (462)
146 1mky_A Probable GTP-binding pr 99.9 1.3E-23 4.4E-28 157.0 13.4 159 16-179 179-355 (439)
147 4fid_A G protein alpha subunit 99.9 1.3E-23 4.4E-28 150.6 12.8 133 47-179 147-328 (340)
148 3j2k_7 ERF3, eukaryotic polype 99.9 3.7E-24 1.3E-28 159.6 10.0 154 14-171 14-217 (439)
149 2ywe_A GTP-binding protein LEP 99.9 8.7E-23 3E-27 156.2 16.9 159 15-180 4-185 (600)
150 2elf_A Protein translation elo 99.9 1.4E-23 4.7E-28 153.2 11.8 146 19-178 23-179 (370)
151 3izy_P Translation initiation 99.9 5.7E-25 2E-29 166.2 4.7 158 16-178 3-167 (537)
152 3cb4_D GTP-binding protein LEP 99.9 6.8E-23 2.3E-27 157.0 15.6 157 16-179 3-182 (599)
153 2xtp_A GTPase IMAP family memb 99.9 5.9E-23 2E-27 143.8 14.1 162 14-181 19-210 (260)
154 1jny_A EF-1-alpha, elongation 99.9 4.3E-24 1.5E-28 159.3 8.7 152 14-169 3-203 (435)
155 2qtf_A Protein HFLX, GTP-bindi 99.9 5.8E-23 2E-27 149.5 14.3 162 17-181 178-356 (364)
156 3p26_A Elongation factor 1 alp 99.9 1.7E-23 5.9E-28 157.9 11.7 152 14-168 30-227 (483)
157 1g7s_A Translation initiation 99.9 1.2E-23 3.9E-28 161.4 10.5 156 15-178 3-217 (594)
158 1zun_B Sulfate adenylate trans 99.9 4E-23 1.4E-27 154.1 12.8 153 13-169 20-214 (434)
159 3lxw_A GTPase IMAP family memb 99.9 4.6E-23 1.6E-27 143.1 12.3 165 12-180 16-209 (247)
160 1d2e_A Elongation factor TU (E 99.9 4.6E-23 1.6E-27 152.1 12.8 159 16-179 2-195 (397)
161 2c78_A Elongation factor TU-A; 99.9 1.2E-22 4E-27 150.4 14.2 160 14-178 8-211 (405)
162 2ged_A SR-beta, signal recogni 99.9 5.7E-24 1.9E-28 142.5 5.9 129 14-143 45-181 (193)
163 3izq_1 HBS1P, elongation facto 99.9 1.6E-23 5.6E-28 161.3 9.1 153 14-169 164-362 (611)
164 2xtz_A Guanine nucleotide-bind 99.9 3.8E-23 1.3E-27 149.6 9.4 121 59-179 181-345 (354)
165 3t5d_A Septin-7; GTP-binding p 99.9 8E-23 2.7E-27 144.1 8.8 159 14-178 5-203 (274)
166 1f60_A Elongation factor EEF1A 99.9 8E-23 2.7E-27 153.2 8.8 152 14-169 4-202 (458)
167 1zo1_I IF2, translation initia 99.9 8.4E-24 2.9E-28 158.7 3.4 156 15-176 2-164 (501)
168 3lxx_A GTPase IMAP family memb 99.9 6.8E-22 2.3E-26 136.8 12.6 161 12-179 24-214 (239)
169 2aka_B Dynamin-1; fusion prote 99.9 3E-22 1E-26 142.8 10.8 157 15-176 24-250 (299)
170 2h5e_A Peptide chain release f 99.9 2.4E-21 8.3E-26 147.0 14.8 114 15-133 11-149 (529)
171 1pui_A ENGB, probable GTP-bind 99.9 4.1E-21 1.4E-25 130.3 13.0 162 12-181 21-201 (210)
172 1r5b_A Eukaryotic peptide chai 99.9 2.4E-23 8.1E-28 156.4 1.8 156 11-170 37-243 (467)
173 3avx_A Elongation factor TS, e 99.9 2.6E-21 8.9E-26 155.3 13.4 160 14-178 293-485 (1289)
174 3mca_A HBS1, elongation factor 99.9 3.9E-24 1.3E-28 164.3 -2.6 162 13-178 173-396 (592)
175 1dar_A EF-G, elongation factor 99.9 1.1E-20 3.8E-25 147.7 16.3 114 15-133 10-144 (691)
176 2dy1_A Elongation factor G; tr 99.9 5.8E-20 2E-24 143.1 17.6 113 14-131 6-139 (665)
177 2qag_A Septin-2, protein NEDD5 99.8 2.8E-22 9.6E-27 146.0 3.9 162 14-182 34-236 (361)
178 1jwy_B Dynamin A GTPase domain 99.8 2.7E-20 9.3E-25 133.6 13.0 162 15-181 22-264 (315)
179 2xex_A Elongation factor G; GT 99.8 7.1E-20 2.4E-24 143.2 16.3 116 13-133 6-142 (693)
180 2rdo_7 EF-G, elongation factor 99.8 2.3E-19 7.9E-24 140.4 17.5 115 14-133 7-149 (704)
181 2j69_A Bacterial dynamin-like 99.8 2.6E-20 8.8E-25 145.7 12.0 161 15-179 67-325 (695)
182 1azs_C GS-alpha; complex (lyas 99.8 1.4E-20 4.7E-25 137.8 9.0 133 47-179 203-385 (402)
183 3def_A T7I23.11 protein; chlor 99.8 6.5E-20 2.2E-24 128.4 10.5 117 15-132 34-165 (262)
184 1udx_A The GTP-binding protein 99.8 4.6E-19 1.6E-23 130.6 12.7 159 18-182 158-328 (416)
185 3vqt_A RF-3, peptide chain rel 99.8 3.4E-18 1.1E-22 130.4 16.6 113 16-133 30-167 (548)
186 2x2e_A Dynamin-1; nitration, h 99.8 1.4E-19 4.8E-24 131.7 7.8 155 16-175 30-254 (353)
187 3t34_A Dynamin-related protein 99.8 2.7E-19 9.1E-24 130.6 8.4 149 17-172 34-254 (360)
188 1h65_A Chloroplast outer envel 99.8 8.7E-19 3E-23 123.2 8.6 118 15-133 37-169 (270)
189 1wxq_A GTP-binding protein; st 99.8 2.4E-20 8.3E-25 137.1 0.4 80 18-97 1-114 (397)
190 3p32_A Probable GTPase RV1496/ 99.8 2.4E-19 8.3E-24 130.5 4.8 154 14-179 76-284 (355)
191 3l82_B F-box only protein 4; T 99.8 4.5E-18 1.5E-22 112.7 9.3 176 5-182 4-226 (227)
192 2qnr_A Septin-2, protein NEDD5 99.8 2.7E-19 9.2E-24 127.4 3.6 162 14-182 15-217 (301)
193 2wsm_A Hydrogenase expression/ 99.7 3.4E-18 1.1E-22 116.8 6.7 152 14-180 27-215 (221)
194 1u0l_A Probable GTPase ENGC; p 99.7 1.9E-18 6.5E-23 123.1 4.3 134 32-175 32-169 (301)
195 2www_A Methylmalonic aciduria 99.7 1.5E-17 5E-22 120.7 8.5 152 15-178 72-278 (349)
196 1n0u_A EF-2, elongation factor 99.7 1.8E-17 6.1E-22 132.1 9.3 113 14-131 16-163 (842)
197 2qpt_A EH domain-containing pr 99.7 2.5E-17 8.5E-22 125.8 9.3 114 15-133 63-233 (550)
198 2qag_C Septin-7; cell cycle, c 99.7 1.1E-17 3.8E-22 123.4 5.6 158 14-178 28-226 (418)
199 3j25_A Tetracycline resistance 99.7 1.5E-17 5.3E-22 129.1 6.1 157 18-179 3-239 (638)
200 3zvr_A Dynamin-1; hydrolase, D 99.7 2.5E-16 8.4E-21 123.1 12.8 155 16-175 50-274 (772)
201 2p67_A LAO/AO transport system 99.7 1E-17 3.6E-22 121.2 4.7 108 59-178 147-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.7 4.1E-17 1.4E-21 114.1 7.2 118 61-179 109-257 (262)
203 4a9a_A Ribosome-interacting GT 99.7 1E-15 3.5E-20 111.3 13.0 113 16-130 71-194 (376)
204 4fn5_A EF-G 1, elongation fact 99.7 3.2E-15 1.1E-19 117.5 16.2 113 15-132 11-151 (709)
205 3l2o_B F-box only protein 4; s 99.7 1.2E-16 4.1E-21 110.8 7.0 113 68-182 194-311 (312)
206 1jal_A YCHF protein; nucleotid 99.7 4.4E-15 1.5E-19 107.5 14.2 79 18-96 3-108 (363)
207 2hf9_A Probable hydrogenase ni 99.6 2.2E-15 7.6E-20 103.1 9.0 152 14-180 35-225 (226)
208 2qm8_A GTPase/ATPase; G protei 99.6 4.3E-15 1.5E-19 107.3 7.1 153 14-178 52-260 (337)
209 2dby_A GTP-binding protein; GD 99.6 4.5E-14 1.6E-18 102.7 11.8 79 18-96 2-111 (368)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 4.1E-13 1.4E-17 98.1 6.3 84 15-98 20-130 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 2E-12 6.8E-17 92.1 5.2 99 71-175 66-165 (302)
212 2j37_W Signal recognition part 99.2 2.4E-11 8.3E-16 91.6 7.7 154 15-176 99-310 (504)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 9.3E-11 3.2E-15 85.9 9.1 82 15-96 18-127 (392)
214 2qag_B Septin-6, protein NEDD5 99.1 2.9E-10 9.9E-15 83.9 8.7 145 10-161 35-218 (427)
215 3ec1_A YQEH GTPase; atnos1, at 99.1 8.7E-12 3E-16 91.1 0.5 112 17-133 162-289 (369)
216 3h2y_A GTPase family protein; 99.1 1.9E-10 6.6E-15 84.0 6.6 101 70-177 55-158 (368)
217 1tq4_A IIGP1, interferon-induc 99.0 2.5E-09 8.7E-14 78.9 10.9 159 16-181 68-255 (413)
218 3ec1_A YQEH GTPase; atnos1, at 99.0 3.6E-10 1.2E-14 82.6 5.6 102 70-178 57-161 (369)
219 3h2y_A GTPase family protein; 99.0 8.9E-11 3E-15 85.7 2.1 117 17-138 160-293 (368)
220 3sop_A Neuronal-specific septi 99.0 7.1E-10 2.4E-14 77.7 5.0 112 17-133 2-155 (270)
221 1puj_A YLQF, conserved hypothe 98.9 1.4E-09 4.8E-14 76.6 6.0 101 66-178 4-105 (282)
222 1puj_A YLQF, conserved hypothe 98.9 1.8E-09 6.1E-14 76.1 4.4 57 14-71 117-175 (282)
223 3cnl_A YLQF, putative uncharac 98.9 6.1E-10 2.1E-14 77.6 2.0 55 18-72 100-155 (262)
224 1f5n_A Interferon-induced guan 98.7 4E-08 1.4E-12 75.6 7.0 59 14-72 35-102 (592)
225 3szr_A Interferon-induced GTP- 98.6 7.4E-08 2.5E-12 74.8 7.4 26 18-43 46-71 (608)
226 2v3c_C SRP54, signal recogniti 98.6 7.2E-08 2.5E-12 71.7 5.9 109 16-132 98-252 (432)
227 3dm5_A SRP54, signal recogniti 98.5 2.5E-07 8.4E-12 68.8 6.6 110 16-132 99-253 (443)
228 3cnl_A YLQF, putative uncharac 98.3 1.2E-07 4.1E-12 66.1 1.3 93 68-175 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.3 2.3E-06 8E-11 63.5 8.1 110 16-132 96-252 (433)
230 1j8m_F SRP54, signal recogniti 98.3 1.1E-06 3.9E-11 62.3 5.1 66 59-132 179-253 (297)
231 1t9h_A YLOQ, probable GTPase E 98.2 7.2E-07 2.5E-11 63.4 2.6 84 80-172 82-170 (307)
232 3e70_C DPA, signal recognition 98.1 4.7E-06 1.6E-10 59.9 5.4 110 15-131 127-281 (328)
233 2xxa_A Signal recognition part 98.1 8.1E-06 2.8E-10 60.8 6.6 110 16-133 99-255 (433)
234 3q5d_A Atlastin-1; G protein, 98.1 6.2E-06 2.1E-10 61.5 5.9 26 14-39 64-89 (447)
235 1bif_A 6-phosphofructo-2-kinas 98.1 2.9E-07 9.8E-12 69.5 -1.5 85 14-98 36-134 (469)
236 2rcn_A Probable GTPase ENGC; Y 97.9 1.7E-05 5.9E-10 57.5 5.9 86 81-173 127-213 (358)
237 1ye8_A Protein THEP1, hypothet 97.9 7.4E-06 2.5E-10 53.7 2.7 22 19-40 2-23 (178)
238 2px0_A Flagellar biosynthesis 97.8 7E-05 2.4E-09 53.0 7.7 23 16-38 104-126 (296)
239 1zp6_A Hypothetical protein AT 97.7 2.5E-05 8.6E-10 51.5 3.6 26 15-40 7-32 (191)
240 1lvg_A Guanylate kinase, GMP k 97.7 1.6E-05 5.6E-10 52.9 2.5 22 18-39 5-26 (198)
241 1kgd_A CASK, peripheral plasma 97.7 2.2E-05 7.5E-10 51.5 3.0 23 18-40 6-28 (180)
242 3c8u_A Fructokinase; YP_612366 97.7 2.2E-05 7.6E-10 52.6 3.1 27 14-40 19-45 (208)
243 1t9h_A YLOQ, probable GTPase E 97.7 5.3E-06 1.8E-10 59.0 -0.3 26 17-42 173-198 (307)
244 3ec2_A DNA replication protein 97.6 2.9E-05 1E-09 50.8 3.0 33 8-40 29-61 (180)
245 1znw_A Guanylate kinase, GMP k 97.6 2.2E-05 7.6E-10 52.6 2.5 24 17-40 20-43 (207)
246 3tif_A Uncharacterized ABC tra 97.6 2.7E-05 9.4E-10 53.3 2.9 25 18-42 32-56 (235)
247 3tr0_A Guanylate kinase, GMP k 97.6 2.3E-05 7.7E-10 52.3 2.4 23 18-40 8-30 (205)
248 2ffh_A Protein (FFH); SRP54, s 97.6 0.00019 6.4E-09 53.3 7.4 66 60-132 180-251 (425)
249 3a00_A Guanylate kinase, GMP k 97.6 2.5E-05 8.4E-10 51.5 2.4 21 20-40 4-24 (186)
250 4gp7_A Metallophosphoesterase; 97.6 2.8E-05 9.7E-10 50.5 2.7 21 18-38 10-30 (171)
251 2pcj_A ABC transporter, lipopr 97.6 3.4E-05 1.2E-09 52.4 2.9 23 19-41 32-54 (224)
252 1z6g_A Guanylate kinase; struc 97.6 2.9E-05 9.9E-10 52.5 2.5 24 17-40 23-46 (218)
253 3asz_A Uridine kinase; cytidin 97.6 3.7E-05 1.3E-09 51.5 3.0 25 15-39 4-28 (211)
254 1s96_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 52.5 2.4 24 18-41 17-40 (219)
255 1uf9_A TT1252 protein; P-loop, 97.6 4.7E-05 1.6E-09 50.6 3.3 26 15-40 6-31 (203)
256 1htw_A HI0065; nucleotide-bind 97.6 3.5E-05 1.2E-09 49.4 2.5 27 15-41 31-57 (158)
257 2bbw_A Adenylate kinase 4, AK4 97.5 4.9E-05 1.7E-09 52.3 3.2 23 16-38 26-48 (246)
258 2onk_A Molybdate/tungstate ABC 97.5 4.3E-05 1.5E-09 52.5 2.8 24 18-41 25-48 (240)
259 3ney_A 55 kDa erythrocyte memb 97.5 5.4E-05 1.9E-09 50.3 3.2 27 14-40 16-42 (197)
260 1b0u_A Histidine permease; ABC 97.5 4.5E-05 1.5E-09 53.1 2.9 24 18-41 33-56 (262)
261 1sgw_A Putative ABC transporte 97.5 4.7E-05 1.6E-09 51.3 2.9 23 19-41 37-59 (214)
262 3gfo_A Cobalt import ATP-bindi 97.5 4.5E-05 1.6E-09 53.4 2.9 24 18-41 35-58 (275)
263 2cbz_A Multidrug resistance-as 97.5 5.2E-05 1.8E-09 52.0 3.2 24 18-41 32-55 (237)
264 3tqc_A Pantothenate kinase; bi 97.5 8.4E-05 2.9E-09 53.2 4.2 32 8-39 83-114 (321)
265 4dzz_A Plasmid partitioning pr 97.5 0.00082 2.8E-08 44.6 8.9 68 60-131 75-143 (206)
266 1g6h_A High-affinity branched- 97.5 5.1E-05 1.7E-09 52.7 2.9 24 18-41 34-57 (257)
267 4g1u_C Hemin import ATP-bindin 97.5 5.1E-05 1.7E-09 52.9 2.9 24 18-41 38-61 (266)
268 2ff7_A Alpha-hemolysin translo 97.5 5.9E-05 2E-09 52.0 3.2 24 18-41 36-59 (247)
269 4eun_A Thermoresistant glucoki 97.5 5.4E-05 1.9E-09 50.4 2.8 25 15-39 27-51 (200)
270 2pze_A Cystic fibrosis transme 97.5 6.1E-05 2.1E-09 51.3 3.1 23 19-41 36-58 (229)
271 3tau_A Guanylate kinase, GMP k 97.5 6.3E-05 2.1E-09 50.4 3.1 27 15-41 6-32 (208)
272 1ji0_A ABC transporter; ATP bi 97.5 5.7E-05 1.9E-09 51.9 2.9 23 19-41 34-56 (240)
273 2olj_A Amino acid ABC transpor 97.5 5.6E-05 1.9E-09 52.6 2.9 24 18-41 51-74 (263)
274 1kag_A SKI, shikimate kinase I 97.5 4.8E-05 1.6E-09 49.3 2.4 23 18-40 5-27 (173)
275 1mv5_A LMRA, multidrug resista 97.5 9.3E-05 3.2E-09 50.9 3.9 24 18-41 29-52 (243)
276 2rcn_A Probable GTPase ENGC; Y 97.5 8.3E-05 2.8E-09 53.9 3.7 25 18-42 216-240 (358)
277 1vpl_A ABC transporter, ATP-bi 97.5 6E-05 2E-09 52.3 2.9 24 18-41 42-65 (256)
278 2qi9_C Vitamin B12 import ATP- 97.5 7E-05 2.4E-09 51.7 3.1 23 19-41 28-50 (249)
279 2ghi_A Transport protein; mult 97.5 7.2E-05 2.5E-09 52.0 3.2 24 18-41 47-70 (260)
280 2ihy_A ABC transporter, ATP-bi 97.5 7.2E-05 2.5E-09 52.5 3.1 24 18-41 48-71 (279)
281 2d2e_A SUFC protein; ABC-ATPas 97.5 6.5E-05 2.2E-09 51.9 2.8 22 19-40 31-52 (250)
282 2j41_A Guanylate kinase; GMP, 97.5 7.3E-05 2.5E-09 49.8 3.0 25 17-41 6-30 (207)
283 2i3b_A HCR-ntpase, human cance 97.4 5E-05 1.7E-09 50.2 2.1 22 19-40 3-24 (189)
284 2ixe_A Antigen peptide transpo 97.4 7.7E-05 2.6E-09 52.2 3.2 24 18-41 46-69 (271)
285 3b85_A Phosphate starvation-in 97.4 5.2E-05 1.8E-09 50.9 2.2 22 19-40 24-45 (208)
286 2bdt_A BH3686; alpha-beta prot 97.4 6.2E-05 2.1E-09 49.6 2.5 21 19-39 4-24 (189)
287 1y63_A LMAJ004144AAA protein; 97.4 0.00011 3.7E-09 48.3 3.6 26 15-40 8-33 (184)
288 1knq_A Gluconate kinase; ALFA/ 97.4 0.0001 3.4E-09 47.9 3.4 24 16-39 7-30 (175)
289 2yz2_A Putative ABC transporte 97.4 7.5E-05 2.6E-09 52.1 2.9 24 18-41 34-57 (266)
290 2zu0_C Probable ATP-dependent 97.4 8E-05 2.7E-09 52.0 3.0 23 18-40 47-69 (267)
291 2nq2_C Hypothetical ABC transp 97.4 8.6E-05 2.9E-09 51.4 3.1 24 19-42 33-56 (253)
292 1u0l_A Probable GTPase ENGC; p 97.4 9.8E-05 3.3E-09 52.5 3.4 26 18-43 170-195 (301)
293 3kb2_A SPBC2 prophage-derived 97.4 8.8E-05 3E-09 47.9 2.9 21 19-39 3-23 (173)
294 2v9p_A Replication protein E1; 97.4 7.5E-05 2.6E-09 53.0 2.7 25 15-39 124-148 (305)
295 2eyu_A Twitching motility prot 97.4 7.3E-05 2.5E-09 52.0 2.5 26 15-40 23-48 (261)
296 2pjz_A Hypothetical protein ST 97.4 9.7E-05 3.3E-09 51.4 3.1 23 19-41 32-54 (263)
297 3aez_A Pantothenate kinase; tr 97.4 9.7E-05 3.3E-09 52.7 3.1 27 14-40 87-113 (312)
298 3end_A Light-independent proto 97.4 0.0022 7.6E-08 45.5 10.2 69 60-130 156-225 (307)
299 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.5E-09 48.5 3.6 27 13-39 16-42 (201)
300 3lw7_A Adenylate kinase relate 97.4 0.00011 3.6E-09 47.5 3.0 20 18-37 2-21 (179)
301 2jeo_A Uridine-cytidine kinase 97.4 0.00011 3.7E-09 50.6 3.2 25 15-39 23-47 (245)
302 1ex7_A Guanylate kinase; subst 97.4 9.3E-05 3.2E-09 48.7 2.7 21 20-40 4-24 (186)
303 2qor_A Guanylate kinase; phosp 97.4 9E-05 3.1E-09 49.5 2.7 23 18-40 13-35 (204)
304 1aky_A Adenylate kinase; ATP:A 97.4 0.00011 3.7E-09 49.7 3.1 25 15-39 2-26 (220)
305 2if2_A Dephospho-COA kinase; a 97.4 9.3E-05 3.2E-09 49.3 2.7 22 18-39 2-23 (204)
306 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.7E-09 48.9 3.0 26 15-40 23-48 (200)
307 1ly1_A Polynucleotide kinase; 97.4 0.00012 4.1E-09 47.6 3.1 22 18-39 3-24 (181)
308 1cke_A CK, MSSA, protein (cyti 97.4 0.00011 3.8E-09 49.7 3.0 22 18-39 6-27 (227)
309 1jjv_A Dephospho-COA kinase; P 97.4 0.00012 4.2E-09 48.8 3.2 22 18-39 3-24 (206)
310 1rz3_A Hypothetical protein rb 97.3 0.00014 4.9E-09 48.4 3.4 26 14-39 19-44 (201)
311 3t61_A Gluconokinase; PSI-biol 97.3 9.4E-05 3.2E-09 49.2 2.5 23 17-39 18-40 (202)
312 3trf_A Shikimate kinase, SK; a 97.3 0.00012 4.2E-09 47.9 3.0 23 17-39 5-27 (185)
313 3fvq_A Fe(3+) IONS import ATP- 97.3 0.0001 3.5E-09 53.5 2.8 24 19-42 32-55 (359)
314 1jbk_A CLPB protein; beta barr 97.3 0.00021 7.3E-09 46.6 4.2 33 8-40 34-66 (195)
315 2bbs_A Cystic fibrosis transme 97.3 0.00013 4.3E-09 51.6 3.1 24 18-41 65-88 (290)
316 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4.1E-09 48.7 2.8 24 16-39 24-47 (199)
317 2qt1_A Nicotinamide riboside k 97.3 0.00016 5.6E-09 48.3 3.5 25 16-40 20-44 (207)
318 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5E-09 47.5 3.2 23 17-39 4-26 (186)
319 1sq5_A Pantothenate kinase; P- 97.3 0.0002 6.9E-09 51.0 4.0 25 15-39 78-102 (308)
320 2rhm_A Putative kinase; P-loop 97.3 0.00017 5.7E-09 47.5 3.3 23 17-39 5-27 (193)
321 4a74_A DNA repair and recombin 97.3 0.00011 3.8E-09 49.8 2.5 22 18-39 26-47 (231)
322 3fb4_A Adenylate kinase; psych 97.3 0.00015 5E-09 48.8 3.0 21 19-39 2-22 (216)
323 1z47_A CYSA, putative ABC-tran 97.3 0.00013 4.3E-09 53.0 2.8 24 19-42 43-66 (355)
324 3lnc_A Guanylate kinase, GMP k 97.3 7.1E-05 2.4E-09 51.0 1.5 24 17-40 27-51 (231)
325 3nh6_A ATP-binding cassette SU 97.3 8.7E-05 3E-09 52.8 1.9 24 18-41 81-104 (306)
326 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.4E-09 48.6 3.0 21 19-39 2-22 (216)
327 2yyz_A Sugar ABC transporter, 97.3 0.00013 4.6E-09 52.9 2.8 23 19-41 31-53 (359)
328 1odf_A YGR205W, hypothetical 3 97.3 0.00019 6.4E-09 50.7 3.4 27 13-39 27-53 (290)
329 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.9E-09 47.2 2.7 22 18-39 4-25 (178)
330 2yv5_A YJEQ protein; hydrolase 97.3 0.00019 6.5E-09 51.0 3.5 23 18-41 166-188 (302)
331 2ehv_A Hypothetical protein PH 97.3 0.00014 4.7E-09 49.9 2.7 21 18-38 31-51 (251)
332 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.6E-09 47.4 3.0 22 18-39 4-25 (192)
333 2it1_A 362AA long hypothetical 97.3 0.00014 4.8E-09 52.9 2.8 25 18-42 30-54 (362)
334 1nks_A Adenylate kinase; therm 97.3 0.00016 5.6E-09 47.5 2.9 21 19-39 3-23 (194)
335 3rlf_A Maltose/maltodextrin im 97.3 0.00014 4.9E-09 53.1 2.8 24 19-42 31-54 (381)
336 3tui_C Methionine import ATP-b 97.3 0.00015 5E-09 52.8 2.8 24 18-41 55-78 (366)
337 2x8a_A Nuclear valosin-contain 97.3 0.00013 4.5E-09 51.1 2.5 21 20-40 47-67 (274)
338 1ukz_A Uridylate kinase; trans 97.2 0.00024 8.3E-09 47.2 3.7 26 14-39 12-37 (203)
339 2yvu_A Probable adenylyl-sulfa 97.2 0.00022 7.6E-09 46.8 3.4 26 14-39 10-35 (186)
340 1tev_A UMP-CMP kinase; ploop, 97.2 0.00019 6.6E-09 47.2 3.1 23 17-39 3-25 (196)
341 1g29_1 MALK, maltose transport 97.2 0.00015 5.2E-09 52.9 2.8 24 19-42 31-54 (372)
342 3tlx_A Adenylate kinase 2; str 97.2 0.00022 7.4E-09 49.0 3.5 25 15-39 27-51 (243)
343 2jaq_A Deoxyguanosine kinase; 97.2 0.00017 6E-09 47.8 2.9 21 19-39 2-22 (205)
344 1v43_A Sugar-binding transport 97.2 0.00015 5.3E-09 52.9 2.8 24 18-41 38-61 (372)
345 2f1r_A Molybdopterin-guanine d 97.2 6.6E-05 2.3E-09 48.8 0.8 22 19-40 4-25 (171)
346 1lw7_A Transcriptional regulat 97.2 0.00011 3.9E-09 53.5 2.1 25 17-41 170-194 (365)
347 2kjq_A DNAA-related protein; s 97.2 0.00011 3.7E-09 46.6 1.7 25 16-40 35-59 (149)
348 1np6_A Molybdopterin-guanine d 97.2 0.00015 5.2E-09 47.2 2.4 23 18-40 7-29 (174)
349 1zd8_A GTP:AMP phosphotransfer 97.2 0.00019 6.4E-09 48.7 3.0 23 16-38 6-28 (227)
350 2plr_A DTMP kinase, probable t 97.2 0.00024 8.2E-09 47.4 3.4 23 17-39 4-26 (213)
351 4e22_A Cytidylate kinase; P-lo 97.2 0.00025 8.7E-09 49.0 3.6 24 15-38 25-48 (252)
352 3sr0_A Adenylate kinase; phosp 97.2 0.0002 7E-09 47.9 3.0 21 19-39 2-22 (206)
353 2c95_A Adenylate kinase 1; tra 97.2 0.00023 7.7E-09 47.0 3.2 24 16-39 8-31 (196)
354 4b4t_L 26S protease subunit RP 97.2 0.0058 2E-07 45.6 10.8 29 12-40 210-238 (437)
355 2p65_A Hypothetical protein PF 97.2 0.00025 8.7E-09 46.1 3.2 32 9-40 35-66 (187)
356 3jvv_A Twitching mobility prot 97.2 0.00016 5.6E-09 52.5 2.5 22 19-40 125-146 (356)
357 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00021 7.3E-09 51.4 3.0 24 18-41 172-195 (330)
358 1e4v_A Adenylate kinase; trans 97.2 0.00023 7.9E-09 47.8 3.0 21 19-39 2-22 (214)
359 1ixz_A ATP-dependent metallopr 97.2 0.00018 6.2E-09 49.6 2.5 21 20-40 52-72 (254)
360 3iij_A Coilin-interacting nucl 97.2 0.00025 8.5E-09 46.2 3.0 23 16-38 10-32 (180)
361 3be4_A Adenylate kinase; malar 97.2 0.0002 7E-09 48.2 2.6 24 16-39 4-27 (217)
362 2v54_A DTMP kinase, thymidylat 97.2 0.00029 9.9E-09 46.8 3.3 24 17-40 4-27 (204)
363 1gvn_B Zeta; postsegregational 97.2 0.00029 1E-08 49.7 3.4 25 15-39 31-55 (287)
364 1rj9_A FTSY, signal recognitio 97.2 0.00027 9.4E-09 50.2 3.3 24 16-39 101-124 (304)
365 3gd7_A Fusion complex of cysti 97.1 0.00021 7.3E-09 52.5 2.8 24 18-41 48-71 (390)
366 3d31_A Sulfate/molybdate ABC t 97.1 0.00012 4.3E-09 52.9 1.5 24 19-42 28-51 (348)
367 1nn5_A Similar to deoxythymidy 97.1 0.00029 1E-08 47.1 3.3 24 16-39 8-31 (215)
368 1via_A Shikimate kinase; struc 97.1 0.0002 6.9E-09 46.5 2.3 21 19-39 6-26 (175)
369 2vp4_A Deoxynucleoside kinase; 97.1 0.00033 1.1E-08 47.7 3.5 26 15-40 18-43 (230)
370 1xjc_A MOBB protein homolog; s 97.1 0.00026 8.9E-09 45.8 2.8 23 17-39 4-26 (169)
371 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8.1E-09 48.0 2.7 23 17-39 5-27 (222)
372 2vli_A Antibiotic resistance p 97.1 0.00019 6.5E-09 46.8 2.1 24 16-39 4-27 (183)
373 2gza_A Type IV secretion syste 97.1 0.00024 8.2E-09 51.8 2.7 25 17-41 175-199 (361)
374 2wwf_A Thymidilate kinase, put 97.1 0.00031 1.1E-08 46.9 3.1 24 16-39 9-32 (212)
375 3t15_A Ribulose bisphosphate c 97.1 0.00028 9.5E-09 49.9 2.8 26 15-40 34-59 (293)
376 3b9q_A Chloroplast SRP recepto 97.1 0.00034 1.2E-08 49.7 3.3 24 16-39 99-122 (302)
377 2ze6_A Isopentenyl transferase 97.1 0.00024 8.3E-09 49.1 2.5 21 19-39 3-23 (253)
378 1ak2_A Adenylate kinase isoenz 97.1 0.00036 1.2E-08 47.6 3.2 25 15-39 14-38 (233)
379 2ewv_A Twitching motility prot 97.1 0.00026 8.9E-09 51.8 2.7 26 15-40 134-159 (372)
380 3r20_A Cytidylate kinase; stru 97.1 0.00033 1.1E-08 47.8 3.0 24 15-38 7-30 (233)
381 1in4_A RUVB, holliday junction 97.1 0.00025 8.6E-09 51.1 2.5 23 18-40 52-74 (334)
382 1qf9_A UMP/CMP kinase, protein 97.1 0.00049 1.7E-08 45.2 3.7 23 17-39 6-28 (194)
383 1oxx_K GLCV, glucose, ABC tran 97.1 0.00013 4.3E-09 53.0 0.8 25 18-42 32-56 (353)
384 2bwj_A Adenylate kinase 5; pho 97.1 0.00032 1.1E-08 46.4 2.7 23 17-39 12-34 (199)
385 2pez_A Bifunctional 3'-phospho 97.0 0.00038 1.3E-08 45.3 3.0 24 16-39 4-27 (179)
386 1iy2_A ATP-dependent metallopr 97.0 0.00028 9.5E-09 49.4 2.5 21 20-40 76-96 (278)
387 2pt5_A Shikimate kinase, SK; a 97.0 0.00038 1.3E-08 44.7 3.0 21 19-39 2-22 (168)
388 2xb4_A Adenylate kinase; ATP-b 97.0 0.00036 1.2E-08 47.3 2.9 21 19-39 2-22 (223)
389 2f6r_A COA synthase, bifunctio 97.0 0.00047 1.6E-08 48.5 3.5 24 15-38 73-96 (281)
390 3umf_A Adenylate kinase; rossm 97.0 0.00048 1.7E-08 46.5 3.4 22 18-39 30-51 (217)
391 2p5t_B PEZT; postsegregational 97.0 0.00028 9.5E-09 48.8 2.2 25 15-39 30-54 (253)
392 1uj2_A Uridine-cytidine kinase 97.0 0.00046 1.6E-08 47.6 3.3 25 15-39 20-44 (252)
393 1p9r_A General secretion pathw 97.0 0.0003 1E-08 52.2 2.5 26 15-40 165-190 (418)
394 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00073 2.5E-08 48.9 4.4 29 11-39 18-46 (359)
395 2oap_1 GSPE-2, type II secreti 97.0 0.00037 1.3E-08 53.1 3.0 24 18-41 261-284 (511)
396 3bos_A Putative DNA replicatio 97.0 0.00057 1.9E-08 46.4 3.7 24 16-39 51-74 (242)
397 1vht_A Dephospho-COA kinase; s 97.0 0.00052 1.8E-08 46.2 3.4 23 17-39 4-26 (218)
398 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00048 1.6E-08 47.8 3.2 23 17-39 4-26 (260)
399 2pbr_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 45.3 3.0 21 19-39 2-22 (195)
400 2z0h_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 45.4 3.0 21 19-39 2-22 (197)
401 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00033 1.1E-08 52.6 2.5 26 16-41 137-162 (460)
402 1d2n_A N-ethylmaleimide-sensit 97.0 0.0009 3.1E-08 46.6 4.5 27 14-40 61-87 (272)
403 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00037 1.3E-08 47.1 2.5 22 18-39 24-45 (235)
404 2og2_A Putative signal recogni 97.0 0.00052 1.8E-08 49.9 3.3 24 16-39 156-179 (359)
405 2iyv_A Shikimate kinase, SK; t 96.9 0.00046 1.6E-08 45.1 2.7 21 19-39 4-24 (184)
406 3kta_A Chromosome segregation 96.9 0.00047 1.6E-08 45.0 2.8 21 19-39 28-48 (182)
407 1e6c_A Shikimate kinase; phosp 96.9 0.00046 1.6E-08 44.5 2.7 21 19-39 4-24 (173)
408 1lv7_A FTSH; alpha/beta domain 96.9 0.00039 1.3E-08 48.0 2.4 24 17-40 45-68 (257)
409 3h4m_A Proteasome-activating n 96.9 0.00071 2.4E-08 47.4 3.7 26 15-40 49-74 (285)
410 2yhs_A FTSY, cell division pro 96.9 0.00057 2E-08 51.6 3.3 25 15-39 291-315 (503)
411 1zuh_A Shikimate kinase; alpha 96.9 0.00058 2E-08 43.9 2.9 22 18-39 8-29 (168)
412 2obl_A ESCN; ATPase, hydrolase 96.9 0.00047 1.6E-08 49.9 2.7 26 16-41 70-95 (347)
413 4eaq_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 46.1 3.4 25 15-39 24-48 (229)
414 2w58_A DNAI, primosome compone 96.9 0.001 3.5E-08 44.1 4.2 23 18-40 55-77 (202)
415 1tue_A Replication protein E1; 96.9 0.00065 2.2E-08 45.3 3.1 22 18-39 59-80 (212)
416 1gtv_A TMK, thymidylate kinase 96.9 0.00019 6.5E-09 48.1 0.5 21 19-39 2-22 (214)
417 1cr0_A DNA primase/helicase; R 96.9 0.00046 1.6E-08 48.8 2.5 22 18-39 36-57 (296)
418 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00076 2.6E-08 51.8 3.8 26 17-42 47-72 (538)
419 1m7g_A Adenylylsulfate kinase; 96.9 0.00076 2.6E-08 45.2 3.3 25 15-39 23-47 (211)
420 3ozx_A RNAse L inhibitor; ATP 96.9 0.00094 3.2E-08 51.2 4.1 33 10-42 18-50 (538)
421 3nwj_A ATSK2; P loop, shikimat 96.8 0.00047 1.6E-08 47.6 2.1 23 17-39 48-70 (250)
422 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.0006 2E-08 43.2 2.5 19 20-38 26-44 (149)
423 2grj_A Dephospho-COA kinase; T 96.8 0.00083 2.8E-08 44.4 3.2 25 15-39 10-34 (192)
424 1sxj_E Activator 1 40 kDa subu 96.8 0.00079 2.7E-08 48.7 3.4 22 18-39 37-58 (354)
425 3b60_A Lipid A export ATP-bind 96.8 0.00067 2.3E-08 52.6 3.1 24 18-41 370-393 (582)
426 2chg_A Replication factor C sm 96.8 0.00079 2.7E-08 45.0 3.1 21 19-39 40-60 (226)
427 2cvh_A DNA repair and recombin 96.8 0.00061 2.1E-08 45.7 2.5 22 18-39 21-42 (220)
428 3cf0_A Transitional endoplasmi 96.8 0.001 3.5E-08 47.2 3.7 26 15-40 47-72 (301)
429 3euj_A Chromosome partition pr 96.8 0.00056 1.9E-08 51.6 2.5 22 18-39 30-51 (483)
430 2dpy_A FLII, flagellum-specifi 96.8 0.00064 2.2E-08 50.8 2.7 27 15-41 155-181 (438)
431 1n0w_A DNA repair protein RAD5 96.8 0.00066 2.2E-08 46.3 2.5 23 18-40 25-47 (243)
432 3j16_B RLI1P; ribosome recycli 96.8 0.00093 3.2E-08 52.0 3.5 27 16-42 102-128 (608)
433 1svm_A Large T antigen; AAA+ f 96.8 0.00065 2.2E-08 49.7 2.5 25 15-39 167-191 (377)
434 3bk7_A ABC transporter ATP-bin 96.8 0.0011 3.8E-08 51.6 3.9 27 16-42 116-142 (607)
435 4b4t_M 26S protease regulatory 96.8 0.0012 4E-08 49.3 3.8 27 14-40 212-238 (434)
436 3co5_A Putative two-component 96.8 0.00076 2.6E-08 42.3 2.5 25 16-40 26-50 (143)
437 3n70_A Transport activator; si 96.7 0.0009 3.1E-08 42.1 2.8 26 15-40 22-47 (145)
438 3cwq_A Para family chromosome 96.7 0.015 5.2E-07 38.8 9.0 67 60-132 67-134 (209)
439 4a82_A Cystic fibrosis transme 96.7 0.00069 2.4E-08 52.5 2.5 24 18-41 368-391 (578)
440 3b9p_A CG5977-PA, isoform A; A 96.7 0.0007 2.4E-08 47.7 2.4 25 16-40 53-77 (297)
441 3b5x_A Lipid A export ATP-bind 96.7 0.0011 3.7E-08 51.5 3.6 24 18-41 370-393 (582)
442 1nij_A Hypothetical protein YJ 96.7 0.0008 2.7E-08 48.1 2.7 23 18-40 5-27 (318)
443 1p5z_B DCK, deoxycytidine kina 96.7 0.00092 3.2E-08 46.4 2.9 28 13-40 20-47 (263)
444 2yl4_A ATP-binding cassette SU 96.7 0.0007 2.4E-08 52.7 2.4 24 18-41 371-394 (595)
445 1a7j_A Phosphoribulokinase; tr 96.7 0.00053 1.8E-08 48.4 1.6 25 15-39 3-27 (290)
446 1q3t_A Cytidylate kinase; nucl 96.7 0.001 3.6E-08 45.3 3.0 25 15-39 14-38 (236)
447 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0013 4.5E-08 50.5 3.8 25 18-42 313-337 (538)
448 3ozx_A RNAse L inhibitor; ATP 96.7 0.0014 4.7E-08 50.3 3.9 24 19-42 296-319 (538)
449 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0048 1.7E-07 46.1 6.6 25 14-38 64-88 (457)
450 3qf4_B Uncharacterized ABC tra 96.7 0.0008 2.7E-08 52.4 2.6 25 17-41 381-405 (598)
451 1sxj_C Activator 1 40 kDa subu 96.7 0.00093 3.2E-08 48.1 2.8 22 19-40 48-69 (340)
452 3syl_A Protein CBBX; photosynt 96.7 0.0011 3.7E-08 47.0 3.1 26 14-39 64-89 (309)
453 2qgz_A Helicase loader, putati 96.7 0.002 6.8E-08 45.9 4.4 24 16-39 151-174 (308)
454 4b4t_K 26S protease regulatory 96.7 0.0015 5E-08 48.6 3.8 26 15-40 204-229 (428)
455 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0012 4E-08 45.6 3.2 24 16-39 38-61 (262)
456 1sxj_D Activator 1 41 kDa subu 96.7 0.0015 5E-08 47.1 3.7 23 18-40 59-81 (353)
457 3qf4_A ABC transporter, ATP-bi 96.7 0.00093 3.2E-08 51.9 2.8 24 18-41 370-393 (587)
458 1ltq_A Polynucleotide kinase; 96.7 0.00097 3.3E-08 47.1 2.7 22 18-39 3-24 (301)
459 3bk7_A ABC transporter ATP-bin 96.6 0.0015 5E-08 50.9 3.8 24 19-42 384-407 (607)
460 3gmt_A Adenylate kinase; ssgci 96.6 0.0013 4.3E-08 44.8 2.9 24 16-39 7-30 (230)
461 1nlf_A Regulatory protein REPA 96.6 0.00099 3.4E-08 46.6 2.5 22 18-39 31-52 (279)
462 1njg_A DNA polymerase III subu 96.6 0.001 3.5E-08 45.0 2.5 21 19-39 47-67 (250)
463 1l8q_A Chromosomal replication 96.6 0.00097 3.3E-08 47.7 2.4 24 17-40 37-60 (324)
464 3crm_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 46.6 3.4 22 18-39 6-27 (323)
465 4b4t_J 26S protease regulatory 96.6 0.0014 4.9E-08 48.2 3.1 27 14-40 179-205 (405)
466 3te6_A Regulatory protein SIR3 96.6 0.00076 2.6E-08 48.2 1.7 31 10-40 38-68 (318)
467 3pxg_A Negative regulator of g 96.6 0.0014 4.6E-08 49.5 3.1 29 12-40 196-224 (468)
468 2qmh_A HPR kinase/phosphorylas 96.6 0.0014 4.7E-08 43.5 2.7 24 17-40 34-57 (205)
469 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0012 4.2E-08 48.1 2.7 22 16-38 23-44 (365)
470 3zvl_A Bifunctional polynucleo 96.5 0.002 6.8E-08 47.9 3.7 25 16-40 257-281 (416)
471 3j16_B RLI1P; ribosome recycli 96.5 0.0013 4.5E-08 51.2 2.8 25 19-43 380-404 (608)
472 3ake_A Cytidylate kinase; CMP 96.5 0.0017 5.7E-08 43.2 3.0 21 19-39 4-24 (208)
473 3a8t_A Adenylate isopentenyltr 96.5 0.0021 7.3E-08 46.2 3.6 23 18-40 41-63 (339)
474 1vma_A Cell division protein F 96.5 0.002 7E-08 45.8 3.4 24 16-39 103-126 (306)
475 1fnn_A CDC6P, cell division co 96.5 0.0014 4.8E-08 47.8 2.6 22 19-40 46-67 (389)
476 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0013 4.6E-08 47.1 2.4 25 16-40 44-68 (322)
477 2qby_B CDC6 homolog 3, cell di 96.5 0.002 7E-08 46.9 3.4 26 15-40 43-68 (384)
478 4fcw_A Chaperone protein CLPB; 96.4 0.002 6.9E-08 45.6 3.3 23 18-40 48-70 (311)
479 3v9p_A DTMP kinase, thymidylat 96.4 0.0015 5.3E-08 44.3 2.5 24 16-39 24-47 (227)
480 2qby_A CDC6 homolog 1, cell di 96.4 0.0014 4.8E-08 47.7 2.5 26 15-40 43-68 (386)
481 1c9k_A COBU, adenosylcobinamid 96.4 0.002 6.9E-08 42.0 2.9 21 20-40 2-22 (180)
482 2dr3_A UPF0273 protein PH0284; 96.4 0.0017 5.8E-08 44.3 2.7 20 19-38 25-44 (247)
483 1ofh_A ATP-dependent HSL prote 96.4 0.0017 5.8E-08 45.9 2.7 23 17-39 50-72 (310)
484 4b4t_I 26S protease regulatory 96.4 0.0027 9.1E-08 47.1 3.8 27 14-40 213-239 (437)
485 1pzn_A RAD51, DNA repair and r 96.4 0.0015 5.2E-08 47.3 2.5 24 17-40 131-154 (349)
486 3eie_A Vacuolar protein sortin 96.4 0.002 6.9E-08 46.1 3.1 25 16-40 50-74 (322)
487 3d3q_A TRNA delta(2)-isopenten 96.4 0.0018 6.1E-08 46.7 2.7 22 18-39 8-29 (340)
488 2v1u_A Cell division control p 96.4 0.0014 4.7E-08 47.8 2.0 26 15-40 42-67 (387)
489 3foz_A TRNA delta(2)-isopenten 96.4 0.0028 9.6E-08 45.0 3.5 23 17-39 10-32 (316)
490 3exa_A TRNA delta(2)-isopenten 96.4 0.0025 8.5E-08 45.4 3.2 23 18-40 4-26 (322)
491 4b4t_H 26S protease regulatory 96.3 0.0025 8.5E-08 47.7 3.3 28 13-40 239-266 (467)
492 2ocp_A DGK, deoxyguanosine kin 96.3 0.0027 9.2E-08 43.4 3.2 23 17-39 2-24 (241)
493 3qks_A DNA double-strand break 96.3 0.0024 8.1E-08 42.6 2.8 19 20-38 26-44 (203)
494 2r62_A Cell division protease 96.3 0.001 3.6E-08 46.1 1.1 21 19-39 46-66 (268)
495 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0018 6.3E-08 49.1 2.4 22 19-40 66-87 (499)
496 2iw3_A Elongation factor 3A; a 96.3 0.0022 7.4E-08 52.5 3.0 24 18-41 462-485 (986)
497 3uk6_A RUVB-like 2; hexameric 96.3 0.0031 1.1E-07 45.8 3.4 22 18-39 71-92 (368)
498 2z4s_A Chromosomal replication 96.3 0.002 6.9E-08 48.2 2.4 23 17-39 130-152 (440)
499 3m6a_A ATP-dependent protease 96.2 0.002 6.8E-08 49.6 2.4 25 16-40 107-131 (543)
500 2qp9_X Vacuolar protein sortin 96.2 0.0021 7.3E-08 46.7 2.5 24 17-40 84-107 (355)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-39 Score=216.27 Aligned_cols=181 Identities=59% Similarity=1.009 Sum_probs=153.5
Q ss_pred CchhhHHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHh
Q 030113 1 MGALVSKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
||++++++++ ++.++.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++++...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8999888888 777899999999999999999999999888777778888888888889999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999999987644467999999999999876666777666655434456779999999
Q ss_pred ccCCCHHHHHHHHHHhhhccCC
Q 030113 161 LTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++|.|++++++++.+.+.+.++
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC---
T ss_pred CCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999877654
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-39 Score=214.26 Aligned_cols=180 Identities=46% Similarity=0.845 Sum_probs=156.6
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
||++++++++.++. ++.++|+++|++|+|||||++++.++.+..+.++.+.....+.+++..+.+|||||++++...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89999999998887 89999999999999999999999988887788888888888888899999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999988765557899999999999987766777777776555555678999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=6.3e-39 Score=215.01 Aligned_cols=181 Identities=51% Similarity=0.901 Sum_probs=157.6
Q ss_pred CchhhHHHhh--hcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhh
Q 030113 1 MGALVSKFWF--MLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (183)
||++++++++ .++. ++.++|+++|++|+|||||++++.++.+..+.+|.+.....+..+...+.+|||||++++...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 7887777777 5666 789999999999999999999999888877788888888888889999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+.....++.+.++.......++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999999887766678999999999999877666777777765555566789999
Q ss_pred eecccCCCHHHHHHHHHHhhhccC
Q 030113 158 CSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+||+++.|++++++++.+.+.++.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ccCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987764
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.2e-37 Score=208.21 Aligned_cols=178 Identities=41% Similarity=0.747 Sum_probs=146.8
Q ss_pred CchhhHHHhhhcCC-CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHH
Q 030113 1 MGALVSKFWFMLFP-GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (183)
|| +++ .+..+.. ++.++|+++|++|+|||||++++.++....+.+|.+.....+..+...+.+|||||++++...+.
T Consensus 3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 56 444 4444454 78899999999999999999999988866677888888888888999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 99999999999999999999999999999988765556799999999999987767677777666544445678999999
Q ss_pred cccCCCHHHHHHHHHHhhhcc
Q 030113 160 ALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~ 180 (183)
|+++.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988765
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=5.6e-38 Score=210.91 Aligned_cols=175 Identities=47% Similarity=0.868 Sum_probs=150.0
Q ss_pred HHHhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 6 SKFWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 6 ~~~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
.++++.+..++.++|+++|++|+|||||++++.++.+..+.+|.+.....+......+.+|||||++++...+..+++++
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 97 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNT 97 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTC
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 45667777889999999999999999999999998887777888888888888999999999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999999999988765556799999999999987766777777777655556678899999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++++++.+.+.++
T Consensus 178 i~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 178 LYDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988754
No 6
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=5.1e-37 Score=204.42 Aligned_cols=167 Identities=43% Similarity=0.782 Sum_probs=144.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
.+.++|+++|++|+|||||++++.+..+..+.++.+.....+..++..+.+|||||++.+...+..+++++|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++.....|+..++......+.|+++|+||+|+.+.....++.+.++........++++++||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999999998887765456799999999999987766666766665544445677899999999999999999999
Q ss_pred HhhhccC
Q 030113 175 QRVTGKA 181 (183)
Q Consensus 175 ~~~~~~~ 181 (183)
+.+.+++
T Consensus 174 ~~~~~~~ 180 (181)
T 1fzq_A 174 KNVNAKK 180 (181)
T ss_dssp HTC----
T ss_pred HHHHhcc
Confidence 9887653
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.3e-36 Score=200.50 Aligned_cols=167 Identities=46% Similarity=0.871 Sum_probs=149.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDS 94 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (183)
++.++|+++|++|+|||||++++.++.+....++.+.....+.++...+.+|||||++++...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999998888888888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 95 TDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+++.++.....++..++......+.|+++|+||+|+.+.....++.+.+........+++++++||++|.|++++++++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999988765456799999999999987766677777776555556678999999999999999999999
Q ss_pred HhhhccC
Q 030113 175 QRVTGKA 181 (183)
Q Consensus 175 ~~~~~~~ 181 (183)
+.+.+++
T Consensus 165 ~~i~~~q 171 (171)
T 1upt_A 165 ETLKSRQ 171 (171)
T ss_dssp HHHHTCC
T ss_pred HHHhhcC
Confidence 9987754
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=8.6e-37 Score=200.10 Aligned_cols=163 Identities=53% Similarity=0.972 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (183)
+||+++|++|+|||||++++.++.+....+|.+.....+......+.+|||||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 98 ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|++++++++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999988765556799999999999987766677777776555555678899999999999999999999988
Q ss_pred hcc
Q 030113 178 TGK 180 (183)
Q Consensus 178 ~~~ 180 (183)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 765
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=4.8e-36 Score=201.16 Aligned_cols=165 Identities=31% Similarity=0.532 Sum_probs=140.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
...+.++|+++|++|+|||||++++.++.+..+.++.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34677899999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc-------cCCCceEEEEeecccCCC
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS-------IKNHDWHIQACSALTGDG 165 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~S~~~~~g 165 (183)
|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.... .....++++++||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999988765556799999999999987666666666654322 223567899999999999
Q ss_pred HHHHHHHHHHhh
Q 030113 166 LVDGLEWISQRV 177 (183)
Q Consensus 166 i~~~~~~i~~~~ 177 (183)
++++|+++.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=8.9e-36 Score=199.56 Aligned_cols=169 Identities=30% Similarity=0.554 Sum_probs=145.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..++.++|+|+|++|+|||||++++.++.+. .+.++.+..+..+......+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 3457799999999999999999999988775 467888888888888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.+........+++++++||++|.|++++|+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999999988764446799999999999987666667766666554455678899999999999999999
Q ss_pred HHHHhhhccC
Q 030113 172 WISQRVTGKA 181 (183)
Q Consensus 172 ~i~~~~~~~~ 181 (183)
++.+.+.+++
T Consensus 178 ~l~~~~~~~~ 187 (188)
T 1zd9_A 178 WLIQHSKSRR 187 (188)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhhc
Confidence 9999887654
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=6.4e-36 Score=199.11 Aligned_cols=164 Identities=62% Similarity=1.038 Sum_probs=143.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+.++|+++|++|+|||||++++.++.+....++.+.....+.+++..+.+|||||++++...+..+++++|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999988777888888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++.....|+..+.......+.|+++|+||+|+.+.....++.+.++.......+++++++||++|.|++++|++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999998876444679999999999998776677777777655545567799999999999999999999
Q ss_pred HHhh
Q 030113 174 SQRV 177 (183)
Q Consensus 174 ~~~~ 177 (183)
.+.+
T Consensus 178 ~~~l 181 (181)
T 2h17_A 178 MSRL 181 (181)
T ss_dssp HTC-
T ss_pred HhhC
Confidence 8753
No 12
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.9e-38 Score=212.96 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=122.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEE--EE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEEL--VY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.|.+.+||+|+|++|||||||++++..+.+.. +.+|++..+... .. ..+.+++|||+|++++..++..+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 35678999999999999999999999988865 567877655433 23 34789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+. ....+..+.. ...+++|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBS
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHH-----HHhCCeeEEEeCCCCcC
Confidence 999999999999999999999886543 357999999999998653 2333322221 22346799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
|+++|+.|++.+.+.
T Consensus 163 V~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 163 VKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.8e-36 Score=202.39 Aligned_cols=171 Identities=34% Similarity=0.623 Sum_probs=142.8
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc--cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT--HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+...++|+|+|++|+|||||++++.+..+... .+|.+.....+......+.+|||||++++...+..+++++|++
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34556889999999999999999999999887653 7888988888888999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCC-------CCCeEEEEEeCCCCCCCCCHHHHHhhcCcCcc-CCCceEEEEeec
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDL-------QHSVVLIFANKQDLKDAMTPAEITDALSLHSI-KNHDWHIQACSA 160 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S~ 160 (183)
|+|||++++.+|..+..|+..+...... .+.|+++|+||+|+.......++.+.++.... ...+++++++||
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 170 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG 170 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence 9999999999999999999988765221 27899999999999887777777776664433 446789999999
Q ss_pred ccCCCHHHHHHHHHHhhhccC
Q 030113 161 LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~~ 181 (183)
+++.|++++|++|.+.+.++.
T Consensus 171 ~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 171 LKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTBTHHHHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.6e-35 Score=199.81 Aligned_cols=165 Identities=28% Similarity=0.525 Sum_probs=133.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVI 92 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (183)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 45678999999999999999999999988877778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc---------c---CCCceEEEEeec
Q 030113 93 DSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS---------I---KNHDWHIQACSA 160 (183)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~S~ 160 (183)
|+++++++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.... . ....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999988765456799999999999987666666666554321 0 124678999999
Q ss_pred ccCCCHHHHHHHHHHhh
Q 030113 161 LTGDGLVDGLEWISQRV 177 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~ 177 (183)
++|+|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-35 Score=195.04 Aligned_cols=167 Identities=38% Similarity=0.730 Sum_probs=139.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
..+.++|+++|++|+|||||++++.+.. ...+.++.+.....+.+++..+.+|||||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3577999999999999999999999887 33466788888888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCC--CCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDL--QHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++.....|+..+...... .+.|+++|+||+|+.+.....++.+.+........+++++++||+++.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999999888766444 57999999999999877666666666653333345778999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
++++.+.+.+.
T Consensus 178 ~~~l~~~i~~~ 188 (190)
T 2h57_A 178 VDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=209.76 Aligned_cols=168 Identities=52% Similarity=0.948 Sum_probs=146.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.++.++|+|+|++|+|||||++++.+..+....+|.+.....+......+.+|||||++.+...+..+++.+|++|+|||
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999988777789998888888999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++..+..++..++......+.|+++|+||+|+.+.....++...++.......+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999887666689999999999998877778888888776666778899999999999999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+.+++
T Consensus 322 ~~~l~~~k 329 (329)
T 3o47_A 322 SNQLRNQK 329 (329)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99987753
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=2.3e-33 Score=212.76 Aligned_cols=169 Identities=48% Similarity=0.916 Sum_probs=150.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
..+.++|+++|.+|+|||||++++.+..+..+.+|.+.....+.+++..+.+|||||++.+...+..+++++|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 35679999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
++++.++..+..|+..++......++|+++|+||+|+.+.....++.+.++........++++++||++|+|++++|++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999877655689999999999998877778888887766666678899999999999999999999
Q ss_pred HHhhhccCC
Q 030113 174 SQRVTGKAP 182 (183)
Q Consensus 174 ~~~~~~~~~ 182 (183)
.+.+.+..+
T Consensus 479 ~~~~~~~~~ 487 (497)
T 3lvq_E 479 TSNYKSKLA 487 (497)
T ss_dssp HHHCC----
T ss_pred HHHHHhcCC
Confidence 998876654
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.3e-34 Score=187.59 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEe
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVID 93 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (183)
.+||+++|++|+|||||++++.+.......++.+..+. .+.. ....+.+||+||++.+...+..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 58999999999999999999998776665666665543 2223 35688999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHH
Q 030113 94 STDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+... +. ...+++++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-CA----VVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH-HH----HHTTCEEEECBGGGTBSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH-HH----HHhCCcEEEeccCCCCCHHHHHH
Confidence 999999999999999988765567899999999999865432 222222 11 12346899999999999999999
Q ss_pred HHHHhhhcc
Q 030113 172 WISQRVTGK 180 (183)
Q Consensus 172 ~i~~~~~~~ 180 (183)
++.+.+.++
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988765
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=186.21 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=117.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEEEcC--eEEEEEEcCCChh--hHhhHHhhccCCCEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER--LRTSWATYYRGTHAV 88 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (183)
.+.++|+++|++|+|||||++++.+..+....++.+.+. ..+..++ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999988776666666543 3344443 5789999999987 556677888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence 99999999999999988888776654445799999999999965422 22222211 112457999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++|+++.+.+.+++
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 157 AELFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999886543
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=6.8e-33 Score=184.92 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=125.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.+.+||+++|++|+|||||++++.++.+.. +.++.+.....+...+ +.+.+|||+|++.+. +++.+|++
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 445688999999999999999999999888765 3445443334455554 678889999998876 67889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.. .....+..+.... ...++++++||++|.
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGL 165 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTB
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCC
Confidence 99999999999999999999887765446799999999999842 2233333322221 123579999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++++.+.+++
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-33 Score=184.47 Aligned_cols=158 Identities=22% Similarity=0.365 Sum_probs=125.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999887654 456666544 333443 4689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-----CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-----MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999988887776543 357999999999998643 1222222211 12345899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-32 Score=181.67 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=128.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
-...+.+||+|+|++|+|||||++++.+..+. ...++.+.++..... ....+.+|||||++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 33467899999999999999999999988865 456777765543322 4578999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ .....+..+... ..+++++++||+++.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCc
Confidence 9999999999999999988887775532 35799999999999864 223333333322 234689999999999
Q ss_pred CHHHHHHHHHHhhhccCC
Q 030113 165 GLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~~ 182 (183)
|++++++++.+.+.+.++
T Consensus 172 gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 172 NIEELFQGISRQIPPLDP 189 (192)
T ss_dssp SHHHHHHHHHHTCC----
T ss_pred CHHHHHHHHHHHHHhhCC
Confidence 999999999999987765
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.9e-33 Score=185.52 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=126.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. ..++.+..+ ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 567999999999999999999999776644 445665544 2233444 678999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHH
Confidence 99999999999999998888766555679999999999985432 2233222222 2345799999999999999
Q ss_pred HHHHHHHhhhccCC
Q 030113 169 GLEWISQRVTGKAP 182 (183)
Q Consensus 169 ~~~~i~~~~~~~~~ 182 (183)
+|+++.+.+.+++.
T Consensus 159 l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 159 VFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
No 24
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=180.98 Aligned_cols=162 Identities=25% Similarity=0.350 Sum_probs=129.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 356999999999999999999999887654 4566554443 3333 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999999999999888888776555679999999999995432 2233222221 2346799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+|+++.+.+.+.+
T Consensus 168 l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 168 AFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887653
No 25
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=189.82 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=125.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE---EEEcCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE---LVYKNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
....+.+||+++|++|+|||||++++.+..+.. +.++.+..+.. .......+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 344678999999999999999999999888755 34555544322 22256889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence 99999999999999999999999877666689999999999986432 222222221 12345799999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++|+++.+.+.+...
T Consensus 174 v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 174 TQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998876643
No 26
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=9e-32 Score=181.87 Aligned_cols=162 Identities=22% Similarity=0.347 Sum_probs=124.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+..++ ..+.+|||||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 456999999999999999999999887654 45665543 34455554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCce-EEEEeecccCCCH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDW-HIQACSALTGDGL 166 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~gi 166 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..++ +++++||+++.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999998888887776543 357999999999998652 23333333322 1234 7999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++|+++.+.+.++..
T Consensus 181 ~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 181 EEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877643
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=8.5e-32 Score=179.32 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=127.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.+||+++|++|+|||||++++.+..+.. ..++.+..+. .....+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999877654 4455554432 233333 5677899999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecc-cCCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSAL-TGDG 165 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~g 165 (183)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+ ++.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCC
Confidence 999999999999999988888866544567999999999998653 23333322222 123569999999 9999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++.+.+.++
T Consensus 169 v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988764
No 28
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.6e-32 Score=177.16 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=125.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. +.++.+..+.. +.. ....+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887654 44555544332 222 346899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ...+.+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999999888888777654444679999999999986432 2233322221 123568999999999999999
Q ss_pred HHHHHHhhh
Q 030113 170 LEWISQRVT 178 (183)
Q Consensus 170 ~~~i~~~~~ 178 (183)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 29
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.8e-32 Score=184.30 Aligned_cols=163 Identities=23% Similarity=0.276 Sum_probs=124.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.+||+++|++|+|||||++++.+..+.. +.++.+..+.. +... ...+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34567999999999999999999999988754 45666655443 2333 46679999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHH-HHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceE-EEEeeccc
Q 030113 89 IVVIDSTDRARISIMKD-ELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWH-IQACSALT 162 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~ 162 (183)
++|||++++.++..+.. |+..+... ..+.|+++|+||+|+.+. ....+..+.... .+++ ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----LGCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----HTCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-----cCCCEEEEeecCC
Confidence 99999999999998744 44444322 257999999999998643 223332222211 1233 99999999
Q ss_pred CCCHHHHHHHHHHhhhccCC
Q 030113 163 GDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~~~ 182 (183)
|.|++++|+++.+.+.++++
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999988765
No 30
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=3.6e-32 Score=183.05 Aligned_cols=163 Identities=23% Similarity=0.247 Sum_probs=126.1
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----------cCcccceeEEE-----EEcCeEEEEEEcCCChhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----------HPTVGSNVEEL-----VYKNIRFEAWDVGGQERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----------~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 75 (183)
....+.+||+++|++|+|||||++.+.+.....+ .++.+.++... ......+.+|||||++++.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456789999999999999999987765543332 23444333221 1134689999999999999
Q ss_pred hhHHhhccCCCEEEEEEeCC------CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC
Q 030113 76 TSWATYYRGTHAVIVVIDST------DRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK 149 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (183)
..+..+++++|++++|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+.....+..+....
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 162 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP---- 162 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh----
Confidence 99999999999999999999 4566777777777763 23467999999999999877666666655543
Q ss_pred CCce-EEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 150 NHDW-HIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ~~~~-~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.++ +++++||++|.|++++|+++.+.+.++.
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 234 7999999999999999999999887653
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.8e-32 Score=180.92 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=119.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..+.+||+++|++|+|||||++++.++.+..+.++.+..+. .+..+ ...+.+|||||+++ ..+++++|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45789999999999999999999999888776677765542 33343 36789999999887 456788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHh--CCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 91 VIDSTDRARISIMKDELFRLL--GHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
|||++++.++..+..|+..+. ......+.|+++|+||+|+.+ .....+..+... ...+++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 999999999999888643332 222235799999999999842 222333322221 1135689999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+++++.+.+.
T Consensus 155 ~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTL 170 (178)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.4e-31 Score=176.78 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=127.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+.+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+... ...+.+|||||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34677999999999999999999999887655 345555443 333343 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCC
Confidence 999999999999999888888776543 3579999999999986432 2333333221 2345799999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++++++.+.+.+.++
T Consensus 162 i~~l~~~l~~~~~~~~~ 178 (181)
T 2efe_B 162 VKEIFYEIARRLPRVQP 178 (181)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999887764
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.6e-32 Score=180.49 Aligned_cols=160 Identities=23% Similarity=0.366 Sum_probs=126.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.++|+++|++|+|||||++++.++.+.. ..++.+.... .+... ...+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3567999999999999999999999877654 4456665443 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999888888776543 257999999999998543 2223332222 123568999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030113 167 VDGLEWISQRVTG 179 (183)
Q Consensus 167 ~~~~~~i~~~~~~ 179 (183)
++++++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 34
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.3e-31 Score=177.46 Aligned_cols=164 Identities=20% Similarity=0.341 Sum_probs=126.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 4567999999999999999999999887654 456666554 3344444 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCC---CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGH---EDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|+|++++.++..+..|+..+... ....+.|+++|+||+|+.+. ....+..+... .....+++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 9999999999998887777766532 22356899999999998632 23333333222 1234579999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++.+.+.+++
T Consensus 160 gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 160 NVAAAFEEAVRRVLATE 176 (177)
T ss_dssp THHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999987653
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.7e-32 Score=180.91 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=124.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-cCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-HPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+... .++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998876543 33433222 2333443 568889999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
|||++++.++..+..|+..+.......+.|+++|+||+|+.+.....+..+.+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877655578999999999998654332222222221 123469999999999999999
Q ss_pred HHHHHhhhcc
Q 030113 171 EWISQRVTGK 180 (183)
Q Consensus 171 ~~i~~~~~~~ 180 (183)
+++.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (189)
T 4dsu_A 158 YTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 36
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.4e-32 Score=182.68 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=129.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.+.+.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..++ ..+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34678999999999999999999999887654 4455554433 234443 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999888888655444679999999999986532 222222221 123568999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++++++.+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 37
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=100.00 E-value=1.5e-31 Score=182.34 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=121.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEc---CeEEEEEEcCCChhhHh-hHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYK---NIRFEAWDVGGQERLRT-SWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+....++.......+.++ ...+.+|||||++++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4577999999999999999999999988877666666666666665 68899999999999988 7888899999999
Q ss_pred EEEeCCCcc-cHHHHHHHHHHHhCC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---------------------
Q 030113 90 VVIDSTDRA-RISIMKDELFRLLGH--EDLQHSVVLIFANKQDLKDAMTPAEITDALSL--------------------- 145 (183)
Q Consensus 90 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--------------------- 145 (183)
+|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+.....+..+.+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 455666666655432 12346899999999999766544333222210
Q ss_pred --CccC---------C--CceEEEEeecccC------CCHHHHHHHHHHhh
Q 030113 146 --HSIK---------N--HDWHIQACSALTG------DGLVDGLEWISQRV 177 (183)
Q Consensus 146 --~~~~---------~--~~~~~~~~S~~~~------~gi~~~~~~i~~~~ 177 (183)
.... . ..++|++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1788999999999 99999999998753
No 38
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.98 E-value=2.5e-31 Score=178.49 Aligned_cols=163 Identities=20% Similarity=0.312 Sum_probs=129.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEc-----------CeEEEEEEcCCChhhHhh
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYK-----------NIRFEAWDVGGQERLRTS 77 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~ 77 (183)
.....++|+|+|++|+|||||++++.+..+.. ..++.+..+. .+... ...+.+|||||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 34567999999999999999999999877643 4566666554 23333 468999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEE
Q 030113 78 WATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
+..+++++|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.... .++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCE
Confidence 99999999999999999999999998888888776544467999999999998652 223333322211 23469
Q ss_pred EEeecccCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++||+++.|+++++++|.+.+.++
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 39
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=5.2e-32 Score=182.19 Aligned_cols=163 Identities=22% Similarity=0.338 Sum_probs=128.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 3567999999999999999999999887654 445555443 4444544 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP--AEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.... .+..+... ..+++++++||+++.|+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAKNATNV 166 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCCCH
Confidence 99999999999999888887775443 357999999999998654322 22222221 22357999999999999
Q ss_pred HHHHHHHHHhhhccCC
Q 030113 167 VDGLEWISQRVTGKAP 182 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~~ 182 (183)
+++|+++.+.+.++.+
T Consensus 167 ~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 167 EQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999877643
No 40
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-32 Score=182.24 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=126.1
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEEc--CeEEEEEEcCCChhhHhhHHhhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVYK--NIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
+++...+.+.++|+++|++|+|||||++++.+..+.. +.++.+..+.. +... ...+.+|||||++. ...+..+++
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~ 97 (196)
T 2atv_A 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMR 97 (196)
T ss_dssp --------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred chhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence 4555566788999999999999999999999887654 44555544432 3333 47799999999988 777888899
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+
T Consensus 98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSAC 172 (196)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCC
Confidence 99999999999999999988888877765444467999999999998653 22233222221 124579999999
Q ss_pred cCC-CHHHHHHHHHHhhhccC
Q 030113 162 TGD-GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~-gi~~~~~~i~~~~~~~~ 181 (183)
++. |++++|+++.+.+.+++
T Consensus 173 ~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhhc
Confidence 999 99999999999987654
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=1.6e-31 Score=175.35 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=124.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+...+ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 457999999999999999999999887654 3445444432 233433 689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 9999999999999888888876554457999999999998643 22333333222 2245799999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++.+.+.++
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988653
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=1.3e-31 Score=177.66 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=127.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEEcC---eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVYKN---IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+...+ ..+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4678999999999999999999999887654 445665 3345555554 899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
+++|+|++++.++..+..|+..+..... ....|+++|+||+|+.+. ....+..+... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999999888877776654210 122448999999998643 22233222221 12457999999999
Q ss_pred CCHHHHHHHHHHhhhccCC
Q 030113 164 DGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~~ 182 (183)
.|++++|+++.+.+.+++.
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999988764
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.98 E-value=3.6e-32 Score=182.99 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cccCccc--ceeEEEEEc--CeEEEEEEcCCChhhHh-hHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHPTVG--SNVEELVYK--NIRFEAWDVGGQERLRT-SWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~~~~--~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 87 (183)
....++|+++|++|||||||++++.+.... ...++.+ .....+..+ ...+.+|||+|++.+.. .+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 356799999999999999999999754332 1222222 233334444 46789999999988765 77788899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCCCCCC
Confidence 99999999999999999998887654433579999999999996532 2223222211 1245799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++++.+.+++
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987654
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.6e-31 Score=175.22 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=119.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc--cccCcccceeEE--EEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV--TTHPTVGSNVEE--LVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.++.++|+++|++|+|||||++++.+..+. ...++.+..+.. +...+ ..+.+|||||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988874 345666665543 23343 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999999888888877755432 579999999999987543 2223222221 1234699999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++++++.+.+.++.
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
No 45
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=4.2e-31 Score=180.52 Aligned_cols=161 Identities=21% Similarity=0.358 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc------------CeEEEEEEcCCChhhHhhHH
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK------------NIRFEAWDVGGQERLRTSWA 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (183)
.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+. .+.+. ...+.+|||||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 456999999999999999999999887643 4455554432 23332 57899999999999999999
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEE
Confidence 999999999999999999999999888887765544467999999999998653 22233322221 12356999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||+++.|++++|+++.+.+.++
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 46
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.3e-31 Score=177.98 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=126.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.++.+.. ..++.+..+. .+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 456999999999999999999999887654 4566665443 344444 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999998888887765432 356999999999998643 22233222221 123579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
No 47
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=8.9e-33 Score=185.36 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=127.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+||+|+|++|+|||||++++.+..+.. ..++.+..... +.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356999999999999999999999877644 34555544433 332 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999999888887777553 23579999999999985432 222222221 1224579999999999999
Q ss_pred HHHHHHHHhhhccCC
Q 030113 168 DGLEWISQRVTGKAP 182 (183)
Q Consensus 168 ~~~~~i~~~~~~~~~ 182 (183)
++|+++.+.+.++.+
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877654
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=9e-32 Score=177.00 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=125.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.... .+... ...+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999888644 4566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ...+..... ...+.+++++||+++.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999998888877776543 23679999999999986432 222222222 1234689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=7.2e-31 Score=174.05 Aligned_cols=161 Identities=24% Similarity=0.349 Sum_probs=126.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
...+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 44577999999999999999999999887654 445555443 333343 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999988888877765432 257999999999998543 22233333222 2346899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=1.1e-31 Score=176.61 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=121.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
..++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999887643 4455554443 33333 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999999988888887775543 2578999999999995432 2222222221 12346999999999999999
Q ss_pred HHHHHHhhhccC
Q 030113 170 LEWISQRVTGKA 181 (183)
Q Consensus 170 ~~~i~~~~~~~~ 181 (183)
++++.+.+.++.
T Consensus 156 ~~~l~~~~~~~~ 167 (170)
T 1g16_A 156 FFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.98 E-value=4.4e-31 Score=176.83 Aligned_cols=162 Identities=25% Similarity=0.369 Sum_probs=123.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhH-hhHHhhccCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLR-TSWATYYRGTH 86 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (183)
...+.+||+++|++|+|||||++++.++.+.. ..++.+..+ ..+...+ ..+.+|||||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34577999999999999999999999887754 445655443 3444444 789999999999998 88899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccC-
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTG- 163 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~- 163 (183)
++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCC
Confidence 999999999999999998888888766545679999999999985432 2222222221 23457999999999
Q ss_pred --CCHHHHHHHHHHhhhc
Q 030113 164 --DGLVDGLEWISQRVTG 179 (183)
Q Consensus 164 --~gi~~~~~~i~~~~~~ 179 (183)
.|++++|+++.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=2e-31 Score=177.85 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=128.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+|||||++++...+..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 334577999999999999999999999887654 3444444432 234443 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCC
Confidence 9999999999999999888888876554457999999999998643 23333333322 2345799999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++|+++.+.+.+++
T Consensus 168 i~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 168 VDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887653
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.1e-31 Score=175.98 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=121.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. ..++.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887654 445555443 3444444 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..+... ...+.+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHH
Confidence 999999999998888776665433 23579999999999986432 2223222221 1235689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=5.9e-31 Score=178.31 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=129.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345678999999999999999999999887654 345555443 3344443 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCC
Confidence 9999999999999999988888876654567999999999998653 22333333322 1245799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++.+.+.++
T Consensus 164 i~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 164 VDKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999988653
No 55
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.7e-31 Score=182.14 Aligned_cols=162 Identities=19% Similarity=0.172 Sum_probs=123.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE---EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE---LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....+||+++|++|+|||||++++.++.+.. +.++.+..+.. +......+.+|||+|++++...+..+++++|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34567999999999999999999999888765 45666655432 222457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHH-HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCce
Q 030113 89 IVVIDSTDRARISI-MKDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (183)
|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.++ ....+..+... ..++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCC
Confidence 99999999999998 566666665432 57999999999998642 22222222221 2244
Q ss_pred -EEEEeecccCCC-HHHHHHHHHHhhhccC
Q 030113 154 -HIQACSALTGDG-LVDGLEWISQRVTGKA 181 (183)
Q Consensus 154 -~~~~~S~~~~~g-i~~~~~~i~~~~~~~~ 181 (183)
++++|||++|.| ++++|+++++.+.++.
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 799999999998 9999999999887654
No 56
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.4e-32 Score=179.76 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=125.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 4567999999999999999999999887653 445555433 4455555 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999999988888876542 479999999999986532 2222222221 12346999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
+++++++.+.+.+.
T Consensus 159 ~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 159 EEMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 57
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=5.4e-31 Score=173.23 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=115.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc--CeEEEEEEcCCChhhHh-hHHhhccCCCEEEE
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK--NIRFEAWDVGGQERLRT-SWATYYRGTHAVIV 90 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (183)
.+||+++|++|+|||||++++.+..... ..++.......+... ...+.+||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998765433 222333333444444 46788999999998876 66777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 91 VIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
|||+++++++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999877655557999999999998632 2333322222 22345899999999999999
Q ss_pred HHHHHHHhhhcc
Q 030113 169 GLEWISQRVTGK 180 (183)
Q Consensus 169 ~~~~i~~~~~~~ 180 (183)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.6e-31 Score=175.46 Aligned_cols=158 Identities=19% Similarity=0.336 Sum_probs=125.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+..++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999887654 456655443 333433 468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999999988888887776543 56899999999998643 22333333221 124579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2.2e-32 Score=179.35 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=124.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce-eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN-VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999887654 33444432 23334443 5699999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999999888888765555679999999999985432 2222222221 12346999999999999999
Q ss_pred HHHHHHhhhc
Q 030113 170 LEWISQRVTG 179 (183)
Q Consensus 170 ~~~i~~~~~~ 179 (183)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-31 Score=182.30 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=119.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cccccCccccee--EEEEEcC--eEEEEEEcCCChh-hHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER-LRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (183)
...+||+++|++|+|||||++++.+.. +....++.+... ..+..++ ..+.+|||+|++. .......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456999999999999999999998644 333334444332 3344444 5678999999887 45566777889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||+++..+|..+..|+..+.......++|+++|+||+|+.+. ....+.. .+. ...++++++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a----~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA----VVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHH----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999888887765433357999999999998642 2222211 111 12245799999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++|+++++.+..+
T Consensus 190 v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 190 VKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1e-31 Score=183.64 Aligned_cols=163 Identities=24% Similarity=0.347 Sum_probs=126.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEc----C-eEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYK----N-IRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~----~-~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
.....+||+++|++|+|||||+++++++.+.. ..++.+......... . ..+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45678999999999999999999999877654 456666655554441 1 78999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYEYFEISAKTAH 160 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCEEEEEBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCcEEEEecCCCC
Confidence 9999999999999988887777765432 2458999999999986532 222222222 3345689999999999
Q ss_pred CHHHHHHHHHHhhhccC
Q 030113 165 GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~~ 181 (183)
|++++|+++.+.+.+..
T Consensus 161 gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTTHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999987754
No 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=3.9e-31 Score=174.03 Aligned_cols=159 Identities=21% Similarity=0.292 Sum_probs=118.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. ..++.+..+. .+..+ ...+.+|||||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 567999999999999999999999887654 4566665543 33333 468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999999998888877664322 246899999999998653 22333333221 234679999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=1.1e-30 Score=176.69 Aligned_cols=161 Identities=22% Similarity=0.371 Sum_probs=127.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEcC------------------------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYKN------------------------------ 60 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~~------------------------------ 60 (183)
.++.++|+|+|++|+|||||++++++..+.. ..++.+..+.. +...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3578999999999999999999999887654 44555544332 22222
Q ss_pred ---------eEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 61 ---------IRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 61 ---------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|+.
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence 789999999999999999999999999999999999999998888888776542 38999999999943
Q ss_pred C-CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 132 D-AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
. .....+..+.... .+++++++||+++.|++++++++.+.+.++.+
T Consensus 161 ~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 161 KFQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 2 2333444333322 34589999999999999999999998877644
No 64
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.3e-30 Score=173.94 Aligned_cols=160 Identities=23% Similarity=0.388 Sum_probs=126.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 467999999999999999999999887754 445555443 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999998888887665432 257999999999998542 2223332222 2234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 162 ~l~~~l~~~~~~~ 174 (186)
T 2bme_A 162 EAFVQCARKILNK 174 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 65
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=174.94 Aligned_cols=160 Identities=24% Similarity=0.399 Sum_probs=127.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+|+|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 456999999999999999999999887764 4456565443 2333 3578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+..... ...+++++++||+++.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888888876643 357999999999998643 2223332222 1234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 66
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=6.6e-31 Score=175.95 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=126.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. ..++.+..+. .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 456999999999999999999999887654 4566665543 3333 3578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 173 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINVK 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCHH
Confidence 9999999999988888877765432 3579999999999986432 2222222221 123579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++++++.+.+.++
T Consensus 174 ~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 174 QVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=4.5e-31 Score=177.07 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=124.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.+||+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 466999999999999999999999887654 345555433 3444443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+... ..+++++++||+++.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775532 357999999999998642 22333322221 224579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 173 EAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=6.2e-32 Score=179.19 Aligned_cols=161 Identities=20% Similarity=0.360 Sum_probs=125.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
+.+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+|||||++.+...+..+++++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999877654 445555443 3344444 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 99999999999998888887775432 2569999999999986432 2222222221 22458999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 030113 167 VDGLEWISQRVTGK 180 (183)
Q Consensus 167 ~~~~~~i~~~~~~~ 180 (183)
+++++++.+.+.++
T Consensus 165 ~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 165 KQLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
No 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=2.1e-31 Score=177.40 Aligned_cols=160 Identities=21% Similarity=0.357 Sum_probs=99.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+..++ ..+.+|||||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 457999999999999999999999877653 445665443 3444554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||+++.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887776532 2579999999999996532 2333332221 224579999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 160 ~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 160 NAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3e-31 Score=179.01 Aligned_cols=163 Identities=21% Similarity=0.337 Sum_probs=116.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
...++.++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+..+ ...+.+|||||++++...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 445678999999999999999999999887643 455555443 334444 367999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC--------CCCHHHHHhhcCcCccCCCceEEEEe
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD--------AMTPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
++++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....+..+.. ...+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEEe
Confidence 999999999999999888877766432 224689999999999852 11222222211 1224589999
Q ss_pred ecccCCCHHHHHHHHHHhhhcc
Q 030113 159 SALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
||++|.|++++|+++++.+.++
T Consensus 177 SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC-
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.5e-30 Score=176.44 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=127.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567999999999999999999999887754 445655444 3444443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999988887775433 3579999999999997532 2223222221 234579999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.++.
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 72
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-30 Score=175.33 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=125.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE--EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE--ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. ..++.+..+. .+... ...+.+|||||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 457999999999999999999999988754 4566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+..+... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 9999999999998888887775432 3579999999999996532 2222222221 123579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=4.7e-31 Score=178.93 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=125.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE--EEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE--LVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
..+.++|+|+|++|+|||||++++.+..+.. +.++.+..... +... ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999887654 44565544433 3333 36899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCC
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGD 164 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 164 (183)
++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.+.. ...+...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999988887777665432 12468999999999986432 2223222221 1235579999999999
Q ss_pred CHHHHHHHHHHhhhcc
Q 030113 165 GLVDGLEWISQRVTGK 180 (183)
Q Consensus 165 gi~~~~~~i~~~~~~~ 180 (183)
|++++|+++.+.+.++
T Consensus 161 gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 161 NVEQAFQTIARNALKQ 176 (207)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.3e-31 Score=178.10 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=114.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEc---CeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYK---NIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.++|+++|++|+|||||++++.+..+.. +.++.+... ..+... ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4678999999999999999999999887654 445555433 333333 4789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCC---CHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAM---TPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+++|+|++++.++..+..|+..+.... ...+.|+++|+||+|+.... ...+..+... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999988888877765432 23578999999999985321 2223222221 1235579999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+|.|++++|+++.+.+.++.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887653
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3e-31 Score=178.84 Aligned_cols=164 Identities=14% Similarity=0.184 Sum_probs=124.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
.....++|+++|++|+|||||++++.++.+.. +.++.+..+.. +.. ....+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34677999999999999999999999877654 44555544332 222 246899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNV 158 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCH
Confidence 999999999998888777655543221 2468999999999986532 222222221 112357999999999999
Q ss_pred HHHHHHHHHhhhccC
Q 030113 167 VDGLEWISQRVTGKA 181 (183)
Q Consensus 167 ~~~~~~i~~~~~~~~ 181 (183)
+++++++.+.+.++.
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 159 KELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999887654
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=9.8e-31 Score=171.20 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=123.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 45899999999999999999999887654 334444332 223333 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+..+... ..+++++++|++++.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHH
Confidence 9999999999888888777655444579999999999986532 2233222221 123469999999999999999
Q ss_pred HHHHHhhhc
Q 030113 171 EWISQRVTG 179 (183)
Q Consensus 171 ~~i~~~~~~ 179 (183)
+++.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T 2ce2_X 157 YTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=8.8e-31 Score=178.35 Aligned_cols=161 Identities=22% Similarity=0.338 Sum_probs=124.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
....++|+|+|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3567999999999999999999999887643 445555443 3455555 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ...+..+... ..+++++++||+++.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 170 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVN 170 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999999988888877775532 2468999999999984332 2222222211 123469999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 171 ~l~~~l~~~~~~~ 183 (213)
T 3cph_A 171 EIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 78
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.3e-30 Score=174.65 Aligned_cols=164 Identities=17% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 34577999999999999999999999887654 334444333 2333433 6699999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 89 IVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA-MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ....+..+.... .+++++++||+++.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 999999999999988888777765443457999999999998653 233333332221 23469999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++++++.+.+.+.+
T Consensus 172 ~l~~~l~~~~~~~~ 185 (190)
T 3con_A 172 DAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=4.9e-31 Score=178.63 Aligned_cols=166 Identities=22% Similarity=0.272 Sum_probs=117.4
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
+.....+.+||+++|++|+|||||++++.++.+.. ..++.+..+. .+.. ....+.+|||||++++...+..+++++
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 34455788999999999999999999999877654 3444443322 2223 346677999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc---------Ccc-CCCceE
Q 030113 86 HAVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL---------HSI-KNHDWH 154 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~---------~~~-~~~~~~ 154 (183)
|++++|||++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+....... ... .....+
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999999887 4554444332 57999999999998654221111111000 000 112347
Q ss_pred EEEeecccCCCHHHHHHHHHHhh
Q 030113 155 IQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++++||++|.|++++|+++.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999865
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-31 Score=177.00 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=122.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEE-EEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEE-LVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++|+|||||++++.++.+.. ..++.+..+.. ... ....+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999887643 44555544432 222 236789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCC-CCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHE-DLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999999888877776664421 124689999999999864322 22222211 12245799999999999999
Q ss_pred HHHHHHHhhhccC
Q 030113 169 GLEWISQRVTGKA 181 (183)
Q Consensus 169 ~~~~i~~~~~~~~ 181 (183)
+++++.+.+.+++
T Consensus 157 l~~~l~~~~~~~~ 169 (172)
T 2erx_A 157 LFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999999887654
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2e-31 Score=182.66 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=129.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEE----cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVY----KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
.+...+||+++|++|+|||||+++++.+.+.. +.++.+.+...... ....+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45677999999999999999999977665443 56777666554433 45789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+ ........+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888886643 4789999999999965433221 111122345689999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.+.+
T Consensus 164 ~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 164 KPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999987764
No 82
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=182.68 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=122.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+|+|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999887754 445555443 3445554 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 357899999999998643 2223332222 1234689999999999999
Q ss_pred HHHHHHHHhhhccC
Q 030113 168 DGLEWISQRVTGKA 181 (183)
Q Consensus 168 ~~~~~i~~~~~~~~ 181 (183)
++|+++.+.+.++.
T Consensus 165 ~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 165 KAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 83
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=3.6e-31 Score=179.55 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=96.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Ccc-cccCccc--ceeEEEEEc----CeEEEEEEcCCChhhHhhHHhhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EVV-TTHPTVG--SNVEELVYK----NIRFEAWDVGGQERLRTSWATYYRGT 85 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~~-~~~~~~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (183)
...++|+++|++|+|||||++++.+. .+. .+.++.+ .....+... ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 554 3455665 334445554 56899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCC-C--CCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKD-A--MTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
|++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+ . ....+..+... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999988888765433 25799999999999965 2 22333333322 12368999999
Q ss_pred cc-CCCHHHHHHHHHHhhhcc
Q 030113 161 LT-GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~-~~gi~~~~~~i~~~~~~~ 180 (183)
++ +.|++++|+++.+.+.++
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp -------CHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 99 999999999999987654
No 84
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=175.99 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=120.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.++|+|+|++|+|||||++++.++.+.. +.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 466999999999999999999999887654 445555333 3444444 78999999999999989999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..+.. ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 257999999999998543 2223322222 1234689999999999999
Q ss_pred HHHHHHHHhhhcc
Q 030113 168 DGLEWISQRVTGK 180 (183)
Q Consensus 168 ~~~~~i~~~~~~~ 180 (183)
++|+++.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (200)
T 2o52_A 177 EAFLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 85
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=175.58 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=119.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...++|+++|++|+|||||++++.+..+.. +.++.+..+ ..+...+ ..+.+|||||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4567999999999999999999999887754 335555443 2234443 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC---------ccCCCc-eEEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH---------SIKNHD-WHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~ 158 (183)
+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+.....+....+... .....+ .+++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999998884 454444332 2479999999999986542111111111000 001112 279999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++++++.+.+.++.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 86
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=175.35 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=119.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
..+.+.+||+++|++|+|||||++++.++.+.. +.++.+..+. .+.. ....+.+|||||++.+... ..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 445678999999999999999999999887654 4566665432 2333 3478899999999887764 678899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeec-cc
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHED--LQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSA-LT 162 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~ 162 (183)
+++|||++++.++..+..|+..+..... ..+.|+++|+||+|+... ....+..+... ..+++++++|| ++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~ 169 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLD 169 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCc
Confidence 9999999999999999888887765321 146899999999998543 22233322221 12457999999 89
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
+.|++++|+++++.+.++
T Consensus 170 g~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 170 FEHVQHVFHEAVREARRE 187 (187)
T ss_dssp SHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHhhC
Confidence 999999999999988653
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.6e-30 Score=173.01 Aligned_cols=158 Identities=19% Similarity=0.175 Sum_probs=121.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+...+ ..+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 467999999999999999999999887654 4455554432 333333 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhcCcCccCCCc-eE
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM--------------TPAEITDALSLHSIKNHD-WH 154 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 154 (183)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. ...+..+... ..+ .+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~ 168 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-----EIGACC 168 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----HHTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----HcCCcE
Confidence 99999999999887 5655554432 479999999999996531 1111111111 112 26
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++++||++|.|++++|+++.+.+.+
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998753
No 88
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=3e-30 Score=172.10 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=122.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+... ...+.+|||||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567999999999999999999999877654 3455543332 23333 4678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhc---------CcCccCCCc-eEEEEee
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDAL---------SLHSIKNHD-WHIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (183)
|||++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..... ........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999998887 4555554332 379999999999986432111100000 000011123 3899999
Q ss_pred cccCCCHHHHHHHHHHhhhccCC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
|++|.|++++|+++.+.+.+.++
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCCccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999987654
No 89
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=3.6e-31 Score=178.22 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=115.4
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee--EEEE---EcCeEEEEEEcCCChhhHhhH---Hhhcc
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV--EELV---YKNIRFEAWDVGGQERLRTSW---ATYYR 83 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 83 (183)
..+++.+||+++|++|+|||||++++.+.............. .... .....+.+|||||++++.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445678999999999999999999887754433222222221 2222 345899999999999987766 89999
Q ss_pred CCCEEEEEEeCCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHh----hcCcCccCCCce
Q 030113 84 GTHAVIVVIDSTDR--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITD----ALSLHSIKNHDW 153 (183)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~----~~~~~~~~~~~~ 153 (183)
++|++++|||++++ +++..+..|+...... ..+.|+++|+||+|+.+... ..++.. .+........++
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999997 5667777777766322 25799999999999865311 122222 222222225578
Q ss_pred EEEEeecccCCCHHHHHHHHHHhh
Q 030113 154 HIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
+++++||++ .|++++|+.+++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999999876
No 90
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=3.1e-30 Score=171.98 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...++|+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4678999999999999999999999887754 4455554432 2222 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCceE
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. ....+..+.... ....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence 99999999999888 4555555332 247999999999998642 122222221111 12357
Q ss_pred EEEeecc-cCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSAL-TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~-~~~gi~~~~~~i~~~~~~ 179 (183)
++++||+ ++.|++++|+++.+.+.+
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998765
No 91
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=7.1e-30 Score=172.55 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=120.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
+...+||+++|++|+|||||++++.+..+.. +.++.+..+ ..+..+ ...+.+|||||++++...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4567999999999999999999999887654 345555443 234444 368999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC---------cCccCCCce-EEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS---------LHSIKNHDW-HIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~ 158 (183)
+|||++++.++..+. .|+..+... ..+.|+++|+||+|+.+.....+...... .......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999998884 444444332 14799999999999975421111100000 000011223 79999
Q ss_pred ecccCCCHHHHHHHHHHhhhc
Q 030113 159 SALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~ 179 (183)
||++|.|++++++++.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 92
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=174.15 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=116.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAV 88 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (183)
...+.++|+++|++|+|||||++++.+..+.. +.++.+..+. .+..++ ..+.+|||||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34678999999999999999999999887654 3455554432 334444 5788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCce
Q 030113 89 IVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (183)
++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. ....+....... ....
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~ 169 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKAA 169 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCCc
Confidence 9999999999999887 5665554432 47999999999998642 111122111110 1123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++++||+++.|++++|+++.+.+.+.
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999988654
No 93
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=4.2e-30 Score=174.10 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=120.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEE--cCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVY--KNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
....+||+++|++|+|||||++++.+..+.. +.++.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4577999999999999999999999987754 3455554442 2222 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhcCcCccCCCceE
Q 030113 90 VVIDSTDRARISIM-KDELFRLLGHEDLQHSVVLIFANKQDLKDA--------------MTPAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (183)
+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ....+..+.... ....+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCE
Confidence 99999999999888 4565555432 247999999999998632 122222111111 11357
Q ss_pred EEEeecc-cCCCHHHHHHHHHHhhhc
Q 030113 155 IQACSAL-TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 155 ~~~~S~~-~~~gi~~~~~~i~~~~~~ 179 (183)
+++|||+ ++.|++++|+++.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998764
No 94
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=175.61 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee-EEEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV-EELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
.+.++|+++|++|+|||||++++.++.+.. +.++.+..+ ..+... ...+.+|||||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 467999999999999999999999887654 334444333 223333 4589999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh---------cCcCccCCCc-eEEEEee
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA---------LSLHSIKNHD-WHIQACS 159 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (183)
|||++++.++..+. .|+..+... ..+.|+++|+||+|+.......+.... .........+ .+++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999999887 455555432 246899999999998654211111000 0000111123 3799999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|++|.|++++|+++.+.+.+.+
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987664
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=2.7e-30 Score=175.94 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=121.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEc--CeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYK--NIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+.. +.++.+..+. .+..+ ...+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3578999999999999999999999887654 4456654432 23333 368999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----------CHHHHHhhcCcCccCCCceEEEEe
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM----------TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.. ...+..+.... ....+++++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~ 159 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ----IGAAAYIEC 159 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH----HTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH----cCCceEEEc
Confidence 999999999999887 5655554332 479999999999986532 12222211111 112379999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++|+++++.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC-
T ss_pred cCCCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999887654
No 96
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=2.1e-31 Score=177.15 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
..+.++|+++|++|+|||||++++.++.+.. +.++.+..+. ........+.+|||||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4678999999999999999999999877644 3344442221 12234567889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC------------HHHHHhhcCcCccCCCc-eEE
Q 030113 90 VVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMT------------PAEITDALSLHSIKNHD-WHI 155 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (183)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+... ..+..+.. ...+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK-----KLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH-----HHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH-----HHcCCCEE
Confidence 999999999998887 4555554332 3799999999999864321 11111111 1112 379
Q ss_pred EEeecccCCCHHHHHHHHHHhhhc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+++||++|.|++++|+++.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=5e-32 Score=182.82 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=118.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccc--ceeEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVG--SNVEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
.+.+||+++|++|+|||||++++.+..+.. ..++.+ .....+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999999887654 334444 3344455554 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..... ...........+++++++||+++.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVD---YTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCC---SCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCC---HHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999998888876543 3579999999999986432110 00111111223457999999999999999
Q ss_pred HHHHHHhhhcc
Q 030113 170 LEWISQRVTGK 180 (183)
Q Consensus 170 ~~~i~~~~~~~ 180 (183)
|+++.+.+.++
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.1e-30 Score=174.25 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC--Cccc-ccCcccceeEEEEE-------cCeEEEEEEcCCChhhHhhHHhhccCCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG--EVVT-THPTVGSNVEELVY-------KNIRFEAWDVGGQERLRTSWATYYRGTH 86 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~--~~~~-~~~~~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (183)
.+||+++|++|||||||++++++. .+.. +.+|.+..+..... ....+.+|||+|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3333 45677766544332 4678999999999999988899999999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce----EEEEeecc
Q 030113 87 AVIVVIDSTDR-ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW----HIQACSAL 161 (183)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~S~~ 161 (183)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888888765432 4689999999999865322111111111111122223 49999999
Q ss_pred cCC-CHHHHHHHHHHhhhccC
Q 030113 162 TGD-GLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~-gi~~~~~~i~~~~~~~~ 181 (183)
++. |++++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 996 99999999999887764
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.8e-30 Score=174.32 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=113.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cccccCccccee--EEEEEcC--eEEEEEEcCCChh-hHhhHHhhccCCCE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VVTTHPTVGSNV--EELVYKN--IRFEAWDVGGQER-LRTSWATYYRGTHA 87 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (183)
...+||+++|++|+|||||++++.+.. +....++.+... ..+..++ ..+.+|||+|++. .......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567999999999999999999998633 333333344332 3344444 5678999999876 44456677888999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 88 VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
+++|||+++..+|.....|+..+.......+.|+++|+||+|+... ....+. ..+. ...++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a----~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXA----VVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHH----HHhCCceEEeccccCCC
Confidence 9999999999999998888776654333357899999999998542 222211 1111 12345799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030113 166 LVDGLEWISQRVTG 179 (183)
Q Consensus 166 i~~~~~~i~~~~~~ 179 (183)
++++|+++++.+..
T Consensus 159 v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 159 VKELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=7.4e-29 Score=164.30 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=120.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-c--CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-H--PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...+.++|+++|++|+|||||++++.+..+... . .+.......+..++..+.+|||||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 346789999999999999999999998876542 2 2333445567778889999999999999888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC--ccCC--CceEEEEeecccCCC
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH--SIKN--HDWHIQACSALTGDG 165 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~S~~~~~g 165 (183)
+|+|++++...... ..+.... ..+.|+++|+||+|+.+. ...++...+... .... ...+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999885332222 2223322 146899999999999764 233333333221 1111 237899999999999
Q ss_pred HHHHHHHHHHhhhccC
Q 030113 166 LVDGLEWISQRVTGKA 181 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~ 181 (183)
++++++++.+.+...+
T Consensus 158 v~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999999877654
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=5.1e-30 Score=182.07 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHh---hHHhhccCCCEEEEE
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRT---SWATYYRGTHAVIVV 91 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (183)
||+++|+.|+|||||++++.++..+. ..+|.++....+. ..+++++|||+||+++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887665433 4578887776652 458999999999999964 468899999999999
Q ss_pred EeCCCc--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhcCcCccCC----CceEEEEeecc
Q 030113 92 IDSTDR--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEITDALSLHSIKN----HDWHIQACSAL 161 (183)
Q Consensus 92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~S~~ 161 (183)
||+++. +++.....|+..+... .++.|+++++||+|+..+... +++.+..+...++. .+++|++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2222233333333221 257999999999999754321 23444333333332 57899999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+ .||.++|..+++.+.++.
T Consensus 158 d-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTH
T ss_pred C-CcHHHHHHHHHHHHHhhH
Confidence 8 589999999999887653
No 102
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=6.7e-29 Score=166.84 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=109.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeE--EEEEcCeEEEEEEcCC----------ChhhHhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVE--ELVYKNIRFEAWDVGG----------QERLRTSW 78 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~D~~g----------~~~~~~~~ 78 (183)
......++|+++|++|+|||||++++.+..+ ....++.+.+.. .... +.++.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445789999999999999999999998874 334444443322 2222 34799999999 77777778
Q ss_pred HhhccCC---CEEEEEEeCCCcccHHHHH--HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCce
Q 030113 79 ATYYRGT---HAVIVVIDSTDRARISIMK--DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 79 ~~~~~~~---d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 153 (183)
..+++.+ |++++|+|++++.++.... .++.. .+.|+++|+||+|+.+........+.+..........
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 8887776 9999999999887765532 22222 4689999999999976543333222222211123467
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhh
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+++++||+++.|++++++++.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998875
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2e-28 Score=168.48 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=112.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCC------hhh---HhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQ------ERL---RTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 82 (183)
.+.++|+|+|++|+|||||++++++..+... ..+.......+......+.+|||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 4679999999999999999999998876421 12344445555667889999999998 331 12234457
Q ss_pred cCCCEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCC--ceEEEE
Q 030113 83 RGTHAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNH--DWHIQA 157 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 157 (183)
..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+.+...... ...... ...... .+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 7889999999999987764 233455555443 24689999999999965432211 111111 111112 268999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||++|.|++++|+++.+.+.+.
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 104
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=7.2e-29 Score=166.55 Aligned_cols=160 Identities=20% Similarity=0.230 Sum_probs=115.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEE-EEEcCeEEEEEEcCC----------ChhhHhhHHhh
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEE-LVYKNIRFEAWDVGG----------QERLRTSWATY 81 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 81 (183)
.....++|+++|++|+|||||++++.+.......++.+.+... ....+.++.+||||| ++.+...+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3456789999999999999999999998866555555544322 222356789999999 66677777777
Q ss_pred ccCC---CEEEEEEeCCCcccHH--HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEE
Q 030113 82 YRGT---HAVIVVIDSTDRARIS--IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 82 ~~~~---d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
++.+ |++++|+|+++..+.. .+..|+... +.|+++|+||+|+.+........+...........++++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 7665 9999999998764432 233333332 589999999999976544433333332222222456799
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
++||++|.|++++|+++.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=3.8e-31 Score=179.18 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=119.6
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE---EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCE
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE---ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHA 87 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (183)
+...+.++|+++|++|+|||||++++.++.+.. ..++.+..+. ........+.+|||||++++...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445678999999999999999999999877644 2334332221 122245678899999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---------HHHhhcCcCccCCCce-EEE
Q 030113 88 VIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---------EITDALSLHSIKNHDW-HIQ 156 (183)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (183)
+++|+|++++.++.... .|+..+... . .+.|+++|+||+|+.+..... .+............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999998887 444444332 1 379999999999986532111 1111111222223344 799
Q ss_pred EeecccCCCHHHHHHHHHHhh
Q 030113 157 ACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~ 177 (183)
++||++|.|++++|+++.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998765
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=2.1e-28 Score=175.00 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=122.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cc--cccCcccceeEEEEE-cCeEEEEEEcCCChhh-----HhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VV--TTHPTVGSNVEELVY-KNIRFEAWDVGGQERL-----RTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~--~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (183)
..+||+++|++|+|||||++++.++. +. .+.+|.+.....+.. +...+.+|||||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998773 22 356788888777775 6789999999999988 67788889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHH---HHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhcCcCccCCC---ceEEE
Q 030113 86 HAVIVVIDSTDRARISIMKDEL---FRLLGHEDLQHSVVLIFANKQDLKDAMTPAE---ITDALSLHSIKNH---DWHIQ 156 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~ 156 (183)
|++++|||++++.++..+..|. ..+... .++.|+++|+||+|+.......+ ............. .++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999998886553 333222 25799999999999875222210 1111111111222 47899
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++||++ .|+.++|..+++.+...
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred EeeecC-ChHHHHHHHHHHHHcCC
Confidence 999999 89999999998876543
No 107
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=3.9e-28 Score=160.18 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=109.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHh--------hHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRT--------SWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 82 (183)
++..+|+++|++|+|||||++++.+...... ..+.......+..++..+.+|||||+.+... ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 3568999999999999999999998764321 2233344456667788899999999864211 122457
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998887653 34554444322 24689999999999853211 11122456899999999
Q ss_pred CCCHHHHHHHHHHhhhcc
Q 030113 163 GDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~~ 180 (183)
+.|++++|+++.+.+...
T Consensus 150 g~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp CTTHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999887543
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=7.3e-28 Score=156.98 Aligned_cols=148 Identities=20% Similarity=0.141 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (183)
++|+++|++|+|||||++++.+..+... ..+.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 6899999999999999999998764322 2233344556667788999999999876 4566777889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCH
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGL 166 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi 166 (183)
++++|+|++++.+.. ..++...+.. .+.|+++|+||+|+.+.. .+.. ........+++++||+++.|+
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-----~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-----PLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-----GGGGGSSCSCEECBTTTTBSH
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-----HHHhCCCCCeEEEecccCCCh
Confidence 999999999864432 2233333222 468999999999986431 1111 111111126999999999999
Q ss_pred HHHHHHHHHhh
Q 030113 167 VDGLEWISQRV 177 (183)
Q Consensus 167 ~~~~~~i~~~~ 177 (183)
+++|+++.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999876
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=3.9e-27 Score=154.37 Aligned_cols=148 Identities=25% Similarity=0.296 Sum_probs=106.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccC--cccceeEEEEEcCeEEEEEEcCCChhhH------hhHHhhcc--C
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THP--TVGSNVEELVYKNIRFEAWDVGGQERLR------TSWATYYR--G 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 84 (183)
+.++|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||+.++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 45899999999999999999999865432 222 2333445566678899999999988763 33455554 8
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+.... ...++.+.+ +++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 999999999987543 3345555433 368999999999974321 122222222 246999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.4e-27 Score=169.50 Aligned_cols=165 Identities=20% Similarity=0.096 Sum_probs=121.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEc-CeEEEEEEcCCChh----------hHh
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYK-NIRFEAWDVGGQER----------LRT 76 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~D~~g~~~----------~~~ 76 (183)
..+...-.|+++|.+|+|||||+|++++..+...++ |........... +.++.+|||||+.+ +..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345677899999999999999999999988654333 333333445566 89999999999844 335
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhcCcCccCCCceEE
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK-DAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
.+..+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+. +.....+..+.+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 667788999999999999998887776655555543 468999999999986 3333333333332211 123569
Q ss_pred EEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+++||++|.|++++++++.+.+.+.++
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999876543
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=5.7e-27 Score=166.83 Aligned_cols=158 Identities=18% Similarity=0.081 Sum_probs=114.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChh--------hHhhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQER--------LRTSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (183)
.+..+|+++|++|+|||||+|++++..+...++ |.......+..++.++.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999987653222 22222233456789999999999765 556667889
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+++|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 9999999999998875433 345444433321 4689999999999865422 11222222 233469999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
+|.|++++++++.+.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 156 DERQVAELKADLLALMPEGP 175 (301)
T ss_dssp CHHHHHHHHHHHHTTCCBCC
T ss_pred CCCCHHHHHHHHHHhcccCC
Confidence 99999999999999876543
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=7.9e-27 Score=168.66 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=118.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeE-EEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVE-ELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVIV 90 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (183)
...++|+++|++|+|||||++++.++.+.. +.++.+..+. .+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 456999999999999999999999877644 3445443332 233343 566799999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhcCcCccCCCc-eE
Q 030113 91 VIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKDAM--------------TPAEITDALSLHSIKNHD-WH 154 (183)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~ 154 (183)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. ...+..+.. ...+ .+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 305 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-----KEIGAVK 305 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-----HHTTCSE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH-----HHcCCcE
Confidence 99999999998887 4444443322 379999999999985431 111111111 1123 37
Q ss_pred EEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 155 IQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++++||++|.|++++|+++.+.+.+.
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999988654
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=3.6e-28 Score=162.57 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEEEcCeEEEEEEcCC-----------ChhhHhhHHhhccC-
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELVYKNIRFEAWDVGG-----------QERLRTSWATYYRG- 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (183)
++|+++|++|+|||||++++.+..+.. ..++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887643 334434444444444 789999999 67777777777776
Q ss_pred CCEEEEEEeCCCcccHHHHH-HHHHH--------HhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCce
Q 030113 85 THAVIVVIDSTDRARISIMK-DELFR--------LLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDW 153 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~-~~~~~--------~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 153 (183)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... ...++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 66666666666667776653 33221 1111112468999999999997643 1122222222110 00123
Q ss_pred EEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 154 HIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 154 ~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
+++++||++|.|++++|+++.+.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 58999999999999999999999877653
No 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=3e-27 Score=161.95 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=109.4
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccc----ceeEEEE-EcCeEEEEEEcCCC----------hhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVG----SNVEELV-YKNIRFEAWDVGGQ----------ERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~----~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 75 (183)
..+...++|+|+|++|+|||||++++++... .....+.+ .....+. .++..+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3445679999999999999999999998862 23322222 2233332 24588999999993 4445
Q ss_pred hhHHhhccC---CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC---
Q 030113 76 TSWATYYRG---THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK--- 149 (183)
Q Consensus 76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~--- 149 (183)
..+..+++. +|++++|+|++++.+. ....+...+.. .+.|+++|+||+|+.+.....+..+.+......
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 566666655 6789999999876432 22222233222 468999999999987543322222211111111
Q ss_pred ---CCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 150 ---NHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 ---~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
....+++++||++|.|+++++++|.+.+....
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 35678999999999999999999999887653
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=5e-27 Score=158.30 Aligned_cols=159 Identities=22% Similarity=0.366 Sum_probs=120.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccce--eEEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSN--VEELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+.. ...+...+ +.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 456899999999999999999999987654 34555543 33455554 57889999999998888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|+++..++..+..|+..+... ...+.|+++++||+|+.+.. ...+..... ...++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999998888877777655332 22468999999999986432 222222211 2245679999999999999
Q ss_pred HHHHHHHHhhhc
Q 030113 168 DGLEWISQRVTG 179 (183)
Q Consensus 168 ~~~~~i~~~~~~ 179 (183)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-27 Score=166.16 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=111.8
Q ss_pred CCCcceEEEEEcCC---------CCCHHHHHHHhcc---CCccc-ccCcc-ccee--E----------------EEEEcC
Q 030113 13 FPGKDYKIIIVGLD---------NAGKTTTLYKLHL---GEVVT-THPTV-GSNV--E----------------ELVYKN 60 (183)
Q Consensus 13 ~~~~~~~i~viG~~---------~~GKStl~~~l~~---~~~~~-~~~~~-~~~~--~----------------~~~~~~ 60 (183)
...+.+||+++|++ |||||||++++.+ ..+.. +.++. +..+ . .+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34577999999999 9999999999998 33322 22332 2110 0 023356
Q ss_pred eEEEEEE-----------------------cCCChhhHhhHHhhcc---------------------CCCEEEEEEeCCC
Q 030113 61 IRFEAWD-----------------------VGGQERLRTSWATYYR---------------------GTHAVIVVIDSTD 96 (183)
Q Consensus 61 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 96 (183)
+.+.+|| ++|++++...+..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 6666666666667766 7999999999999
Q ss_pred c--ccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHH
Q 030113 97 R--ARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
+ .++..+..|+..+.......+.|+++|+||+|+.......+..+.. . ...+++++++||+++.|++++|++++
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~---~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA-L---SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH-H---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH-H---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 8999998888877654223469999999999985432222211111 1 11356799999999999999999999
Q ss_pred Hhhh
Q 030113 175 QRVT 178 (183)
Q Consensus 175 ~~~~ 178 (183)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8774
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=3.6e-27 Score=164.61 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=109.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhc--c
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYY--R 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 83 (183)
.+.++|+++|++|+|||||++++.+..+.. .. .+.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 567999999999999999999999876532 22 233334445566789999999999876643 224444 5
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.+.. ...++.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 89999999999987543 234455543 368999999999974321 122333332 35799999
Q ss_pred cccCCCHHHHHHHHHHhhh
Q 030113 160 ALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~ 178 (183)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999999775
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=5.8e-26 Score=151.66 Aligned_cols=152 Identities=24% Similarity=0.282 Sum_probs=111.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc-cccC--cccceeEEEEEcCeEEEEEEcCCChhhH------hhHHhhcc--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TTHP--TVGSNVEELVYKNIRFEAWDVGGQERLR------TSWATYYR-- 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (183)
.+.++|+++|++|+|||||++++.+..+. ...+ +.......+..++..+.+|||||+..+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46799999999999999999999986542 2223 2334445566778999999999988763 34555554
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.... ...++.+.+ +++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEEE
Confidence 5999999999865 4555666666654 468999999999974321 222222222 24699999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|+++.|++++|+++.+.+.+..
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999887654
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=3.4e-27 Score=164.52 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhHh----------hHHhhc--
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLRT----------SWATYY-- 82 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (183)
.+|+++|++|+|||||+|++.+..... .. .|.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999876422 22 333344556677888999999999876543 445566
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEEEe
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
.++|++++|+|+++.++...+..+ +.. .+.|+++|+||+|+.+.. ....+.+.+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 899999999999886554433332 222 368999999999975322 122232222 3579999
Q ss_pred ecccCCCHHHHHHHHHHh
Q 030113 159 SALTGDGLVDGLEWISQR 176 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~ 176 (183)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999886
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=2.9e-27 Score=166.54 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=109.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-cc--CcccceeEEEEEcCeEEEEEEcCCChhhH----------hhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-TH--PTVGSNVEELVYKNIRFEAWDVGGQERLR----------TSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 82 (183)
+.++|+++|++|+|||||+|++.+..+.. .. .|.......+...+..+.+|||||+.++. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 46899999999999999999999887422 22 23334445566677899999999987654 1223333
Q ss_pred --cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhcCcCccCCCceEEE
Q 030113 83 --RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM----TPAEITDALSLHSIKNHDWHIQ 156 (183)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
+.+|++++|+|+++.++......++... +.|+++|+||+|+.+.. ....+.+.+ +++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEE
Confidence 7899999999998866554444444433 58999999999975322 122222222 35799
Q ss_pred EeecccCCCHHHHHHHHHHhhhcc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
++||++|.|++++++++.+.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999887654
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=7.1e-26 Score=151.75 Aligned_cols=157 Identities=22% Similarity=0.380 Sum_probs=119.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCccccee--EEEEEcC--eEEEEEEcCCChhhHhhHHhhccCCCEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNV--EELVYKN--IRFEAWDVGGQERLRTSWATYYRGTHAVI 89 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (183)
...++|+++|++|+|||||++++.+..+.. +.++.+... ..+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 345899999999999999999999987653 556666443 3455554 45677999999998888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEeecccCCCHH
Q 030113 90 VVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQACSALTGDGLV 167 (183)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~ 167 (183)
+|+|.++..++..+..|+..+... ...+.|+++++||.|+.+.. ...+.. .+. ...++.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l~----~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AFA----EKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHH----HHcCCEEEEEeCCCCCCHH
Confidence 999999998888777776654332 22468999999999986422 222222 221 2245679999999999999
Q ss_pred HHHHHHHHhh
Q 030113 168 DGLEWISQRV 177 (183)
Q Consensus 168 ~~~~~i~~~~ 177 (183)
++++++.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=9.4e-27 Score=163.41 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc-ccccCcccceeEEEEEc-CeEEEEEEcCCChhhH------hhHHhhcc--CC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNVEELVYK-NIRFEAWDVGGQERLR------TSWATYYR--GT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (183)
..++|+++|++|||||||++++.+... ....+..........+. +..+.+|||||+.++. .....++. ++
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 357999999999999999999998652 22223222222222222 6789999999988764 34555665 69
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA----MTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+... .....+.+.+ +++++++||+
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~ 146 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSAL 146 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBTT
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEcc
Confidence 999999999876543 334444432 36899999999997432 1223333332 3579999999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++|+++.+.+.+
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987653
No 123
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=7.1e-26 Score=167.45 Aligned_cols=164 Identities=16% Similarity=0.072 Sum_probs=115.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCccccc----Cccc-------------------ceeEEEEEcCeEEEEEEcC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVG-------------------SNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~D~~ 69 (183)
..++.++|+++|++++|||||+++|.+....... .+.+ ............+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4567899999999999999999999875432210 0000 0000001122689999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCc--Cc
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSL--HS 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~--~~ 147 (183)
|++++...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.+.....+..+.+.. ..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887666666666554322 22589999999999754322222222211 11
Q ss_pred cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 148 IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.....++++++||++|+|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 12246789999999999999999999987754
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=4.1e-26 Score=170.32 Aligned_cols=159 Identities=19% Similarity=0.108 Sum_probs=115.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCC----------hhhHhhHH-h
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQ----------ERLRTSWA-T 80 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 80 (183)
..++|+++|++|+|||||+|++++....... .|.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999988754222 2333444566778889999999997 44444332 4
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++.+|++++|+|++++.++... .++..+.. .++|+++|+||+|+.+... ..+..+.+.........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 78889999999999998887665 34444432 4699999999999876433 23333333332223346689999
Q ss_pred ecccCCCHHHHHHHHHHhhhc
Q 030113 159 SALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~ 179 (183)
||++|.|++++|+.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=3.1e-25 Score=169.44 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccceeEEEE------------EcCeEEEEEEcCCChhhHhhHHh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGSNVEELV------------YKNIRFEAWDVGGQERLRTSWAT 80 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~~~~~~~~ 80 (183)
..+.+||+++|++|+|||||++++.+..+.. ..++.+..+.... .....+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4677999999999999999999999887644 4567666655432 12589999999999999999999
Q ss_pred hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhcCcCccCCCceEEEEe
Q 030113 81 YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM--TPAEITDALSLHSIKNHDWHIQAC 158 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (183)
+++.+|++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+.+.. ...+..+... ..+.+++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 99999999999999876544 44444443322 368999999999986533 2333333332 223469999
Q ss_pred ecccCCCHHHHHHHHHHhhhccC
Q 030113 159 SALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 159 S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
||++|.|++++++++.+.+.+.+
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTT
T ss_pred ecCcccCHHHHHHHHHHHHhccc
Confidence 99999999999999999887654
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=3e-25 Score=166.32 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=97.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 83 (183)
..++|+++|++|+|||||+|++.+.+.... ..|.......+..++..+.+|||||+.++...+ ..+++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 568999999999999999999998764322 233344456677789999999999987765443 34678
Q ss_pred CCCEEEEEEeCCCcccHHH---HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 84 GTHAVIVVIDSTDRARISI---MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
.+|++++|+|++++.++.. ...++..+ .+.|+++|+||+|+.+...... +.+... ...+++++||
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSA 379 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISA 379 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEE
Confidence 9999999999999877642 33333332 2689999999999976543221 111111 0136999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|.|++++++++.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
No 127
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=1.1e-24 Score=157.65 Aligned_cols=134 Identities=18% Similarity=0.306 Sum_probs=107.2
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+.+|||+|+++++..|..++++++++|+|+|+++ .+++.+...|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35666667777889999999999999999999999999999999999998 56799999999999887555
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHHHHHhhcCc-----Ccc-CCCceEEEEeecccCCCHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKD-----------------AMTPAEITDALSL-----HSI-KNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~-----------------~~~~~~~~~~~~~-----~~~-~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
.+.|+++++||.|+.. .....+..+.... ... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 6799999999999842 1233333332221 000 1356789999999999999999999
Q ss_pred HHhhhcc
Q 030113 174 SQRVTGK 180 (183)
Q Consensus 174 ~~~~~~~ 180 (183)
.+.+.+.
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2e-25 Score=167.43 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=114.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCC----------ChhhHhhHH-
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGG----------QERLRTSWA- 79 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (183)
...++|+++|++|+|||||++++.+...... ..+.......+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 4569999999999999999999997763222 2233344456777888999999999 677666544
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|+|++++.+. ...++...+.. .++|+++|+||+|+.+... ..+..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~--~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIE--QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCH--HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478899999999999876432 22333333222 4689999999999875432 2333333333322234568999
Q ss_pred eecccCCCHHHHHHHHHHhhhcc
Q 030113 158 CSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+||++|.|++++|+++.+.+.+.
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 129
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=4.1e-24 Score=152.64 Aligned_cols=135 Identities=17% Similarity=0.249 Sum_probs=108.2
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+++|||+||++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 4677777788889999999999999999999999999999999999654 677899999999999887666
Q ss_pred CCCeEEEEEeCCCCCC------------------CCCHHHHHhhc-----CcCccCCCceEEEEeecccCCCHHHHHHHH
Q 030113 117 QHSVVLIFANKQDLKD------------------AMTPAEITDAL-----SLHSIKNHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
.+.|+++++||.|+.. ....++..+.. .........+.+++|||+++.||+++|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v 312 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 312 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence 7899999999999743 12223322221 111123456789999999999999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+.+++
T Consensus 313 ~~~Il~~~ 320 (327)
T 3ohm_A 313 KDTILQLN 320 (327)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99887654
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=9.4e-25 Score=162.98 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccce----eEEEEEcCeEEEEEEcCCCh--------hhHhhHHhhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSN----VEELVYKNIRFEAWDVGGQE--------RLRTSWATYYRGT 85 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 85 (183)
++|+++|.+|+|||||+|++.+.......++.+++ +....+.+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987765544455543 33344467889999999985 5677788889999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 86 HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
|++++|+|++++.+.. ..++...+.. .++|+++|+||+|+.+... ... ........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~-~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIY-DFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-----------CCC-SSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh------hHH-HHHHcCCCCeEEEeCcCCCC
Confidence 9999999999876543 3445555443 4689999999999864311 111 11111112589999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 030113 166 LVDGLEWISQRVTGK 180 (183)
Q Consensus 166 i~~~~~~i~~~~~~~ 180 (183)
++++++++.+.+.+.
T Consensus 152 v~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHhcCcc
Confidence 999999999988753
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=7.3e-24 Score=149.17 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=110.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc-ccC--cccceeEEEEEcCeEEEEEEcCCChhhHh------hHHhhc--cC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THP--TVGSNVEELVYKNIRFEAWDVGGQERLRT------SWATYY--RG 84 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 84 (183)
+.++|+++|++|+|||||++++.+..+.. ..+ +.......+.+.+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 46899999999999999999999887622 223 33344455666888999999999877654 455555 68
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 85 THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD----AMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
+|++++|+|+++.. ....++..+... ...|+++|+||+|+.+ ......+.+.+ +++++++|+
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999998753 333444444432 2389999999999642 12233333333 346999999
Q ss_pred ccCCCHHHHHHHHHHhhhcc
Q 030113 161 LTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~~ 180 (183)
++|.|++++++++.+.+.+.
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887654
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.2e-26 Score=157.20 Aligned_cols=117 Identities=26% Similarity=0.329 Sum_probs=94.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc----cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC----C
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT----HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG----T 85 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (183)
..+.++|+++|++|+|||||++++.+..+... .++.+..+ ....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 45779999999999999999999998876442 23332222 56789999999999998888888877 8
Q ss_pred CEEEEEEeCC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCCC
Q 030113 86 HAVIVVIDST-DRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAMT 135 (183)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~~ 135 (183)
|++++|+|++ ++.++.....|+..++... ...+.|+++|+||+|+.....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8888988888888876532 225799999999999977654
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=3.6e-25 Score=159.60 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChh----hHhhHH---hhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQER----LRTSWA---TYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~---~~~~~~d 86 (183)
.+|+++|.+|+|||||++++++.... . ...|...+...+.+.+ ..+.+|||||... ...+.. ..++.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36889999999999999999876532 1 2245555555566664 7899999999533 222333 3345699
Q ss_pred EEEEEEeCCC---cccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecc
Q 030113 87 AVIVVIDSTD---RARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++++|+|+++ ..++..+..|+..+..+.. ..++|+++|+||+|+..... ..++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 6778888777777655422 35799999999999864311 1122222221 1469999999
Q ss_pred cCCCHHHHHHHHHHhhhccCC
Q 030113 162 TGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++.|+++++++|.+.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCCC
T ss_pred CCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999887654
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=5.2e-24 Score=157.76 Aligned_cols=161 Identities=19% Similarity=0.083 Sum_probs=105.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc------ccCcccceeEEEEE---------------c--------CeEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT------THPTVGSNVEELVY---------------K--------NIRFE 64 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~------~~~~~~~~~~~~~~---------------~--------~~~~~ 64 (183)
++..++|+++|+.++|||||+++|.+..... ...|....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4678999999999999999999998543211 11244443332221 1 16899
Q ss_pred EEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030113 65 AWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEIT 140 (183)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~ 140 (183)
+|||||++++...+...+..+|++++|+|++++.+.......+..+... ...|+++++||+|+.+... ..++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999988888889999999999999653222222222222111 2257999999999976432 22333
Q ss_pred hhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 141 DALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+.+... ....++++++||++|+|+++++++|.+.+..
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 333221 1245689999999999999999999987754
No 135
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=5.7e-24 Score=155.04 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=115.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEcCeEEEEEEcCCChhhH---------hhHHhhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYKNIRFEAWDVGGQERLR---------TSWATYY 82 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 82 (183)
...++|+++|++|+|||||++++.+..... ...+.......+...+..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999876422 2344455556666678899999999974321 2223445
Q ss_pred cCCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeec
Q 030113 83 RGTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSA 160 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 160 (183)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+.......+..+... ..+.+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998876 6777777777665432 2689999999999865422222222211 23457999999
Q ss_pred ccCCCHHHHHHHHHHhhhc
Q 030113 161 LTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~~ 179 (183)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=2.5e-24 Score=160.80 Aligned_cols=150 Identities=20% Similarity=0.151 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChh---------hHhhHHhhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQER---------LRTSWATYYRG 84 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 84 (183)
.+|+++|.+|||||||+|++.+....... .|....+..+.+.+..+.+|||||.+. +...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987643322 233345667778889999999999653 45567788999
Q ss_pred CCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 85 THAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+|++++|+|++++.+... +..++.. .++|+++|+||+|+.+.. ..+....+. .....+++++||++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~~~~-~~~~~~~~~----~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENLREF-EREVKPELY----SLGFGEPIPVSAEH 149 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSHHHH-HHHTHHHHG----GGSSCSCEECBTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCcccc-HHHHHHHHH----hcCCCCEEEEeccC
Confidence 999999999987654332 3333332 258999999999974220 111101111 11111489999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030113 163 GDGLVDGLEWISQRVTG 179 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~~ 179 (183)
|.|++++++++.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999998864
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=2.1e-24 Score=161.89 Aligned_cols=150 Identities=25% Similarity=0.313 Sum_probs=112.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCCh-hhH--------hhHHhhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQE-RLR--------TSWATYY 82 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 82 (183)
..++|+++|.+|+|||||+|++.+.+... ...|.......+..++..+.+|||||.. ... .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 34899999999999999999999876432 2234445566777889999999999987 432 2245678
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeeccc
Q 030113 83 RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALT 162 (183)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 162 (183)
+.+|++++|+|++++.++... ..+ ..+ .++|+++|+||+|+.+.....++.+... ...+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 899999999999988777553 222 222 3589999999999976544444433321 124599999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030113 163 GDGLVDGLEWISQRVT 178 (183)
Q Consensus 163 ~~gi~~~~~~i~~~~~ 178 (183)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=4.8e-24 Score=151.95 Aligned_cols=159 Identities=20% Similarity=0.121 Sum_probs=108.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCCh-h--------hHhhHHhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQE-R--------LRTSWATY 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~-~--------~~~~~~~~ 81 (183)
.+..+|+++|++|+|||||++++++......+. |.......+..++.++.+|||||+. . +......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999987643222 2222233455678899999999987 3 22333556
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
++.+|++++|+|+++. .....++...+.. .+.|+++++||+|+... ...+.+.+...........++++||+
T Consensus 86 l~~~D~vl~Vvd~~~~---~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 86 IGDVELVIFVVEGTRW---TPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp CCCEEEEEEEEETTCC---CHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HhcCCEEEEEEeCCCC---CHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECC
Confidence 7888999999999762 2233344444332 46899999999998752 22222222111101112369999999
Q ss_pred cCCCHHHHHHHHHHhhhccC
Q 030113 162 TGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~~~ 181 (183)
++.|++++++++.+.+.+.+
T Consensus 158 ~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBCC
T ss_pred CCCCHHHHHHHHHHhCCcCC
Confidence 99999999999998876543
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=8.7e-25 Score=161.42 Aligned_cols=154 Identities=19% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCe-EEEEEEcCCChhhHhh-------HHhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNI-RFEAWDVGGQERLRTS-------WATY 81 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~ 81 (183)
+...++|+|+|+.|+|||||++++.+..+.. ...|.......+.+... .+.+|||||+.++... +..+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 3467999999999999999999999887642 22344455566666554 9999999998765433 4567
Q ss_pred ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 82 YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
+..+|++++|+|+.... ....|+..+... +.|+++|+||+|+...... +..+.+. ...+++++++||+
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECC
Confidence 88999999999994332 233444444332 6899999999999766544 3333332 2234579999999
Q ss_pred cCCCHHHHHHHHHHhhhc
Q 030113 162 TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 ~~~gi~~~~~~i~~~~~~ 179 (183)
+|.|++++++++.+.+.+
T Consensus 179 tg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTSTTTHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999998854
No 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.91 E-value=1.7e-23 Score=158.71 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=88.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------------------CCcc-------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------------------GEVV-------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
+..+|+|+|++|+|||||+++|+. .... ....+.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 568999999999999999999961 1111 122355566677888899999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.++...+..+++.+|++++|+|++++.+..... .|..... .++|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999876655543 3333332 36899999999999654
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=4.3e-24 Score=160.80 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=111.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC----cc------cccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE----VV------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR 83 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (183)
..+.++|+++|++++|||||+++|.+.. .. ....|....+..+.+++..+.+|||||++++...+..++.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 3567999999999999999999998766 21 1224555555667778899999999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--c-CCCceEEEEeec
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--I-KNHDWHIQACSA 160 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~S~ 160 (183)
.+|++++|+|++++..- ....++..+.. .+.|+++++||+|+.+.....+..+.+.... . .....+++++||
T Consensus 96 ~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKT-QTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp SCCEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hCCEEEEEEecCCCccH-HHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 99999999999874211 11222222211 3578899999999975322222222221110 0 112568999999
Q ss_pred ccCCCHHHHHHHHHHhhh
Q 030113 161 LTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 161 ~~~~gi~~~~~~i~~~~~ 178 (183)
++|+|+++++++|.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999999764
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=8.4e-24 Score=156.77 Aligned_cols=162 Identities=20% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc----c--ccCcccceeEEEEEc-----------------------CeEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----T--THPTVGSNVEELVYK-----------------------NIRF 63 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----~--~~~~~~~~~~~~~~~-----------------------~~~~ 63 (183)
.++..++|+++|+.++|||||+++|.+.... + ...|....+...... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3467799999999999999999999854321 1 122554443332220 1689
Q ss_pred EEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH----HHH
Q 030113 64 EAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP----AEI 139 (183)
Q Consensus 64 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~----~~~ 139 (183)
.+|||||++++...+...+..+|++++|+|++++.+.......+...... ...|+++++||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999999988888889999999999999653112222222221111 22579999999999754221 122
Q ss_pred HhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 140 TDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+... ....++++++||++|.|+++++++|.+.+..
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2222211 1245789999999999999999999987753
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=2.2e-24 Score=161.77 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=104.3
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccccCccccee----EEEEEcCeEEEEEEcCC--------ChhhH
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNV----EELVYKNIRFEAWDVGG--------QERLR 75 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~g--------~~~~~ 75 (183)
...........+|+++|.+|||||||+|+|.+..+.....+.+++. ....+.+..+.+||||| ++.+.
T Consensus 14 ~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~ 93 (456)
T 4dcu_A 14 LVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIR 93 (456)
T ss_dssp ---------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHH
T ss_pred CCCChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHH
Confidence 3344455567899999999999999999999887654444445443 33334578999999999 77788
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEE
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHI 155 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (183)
..+..+++.+|++++|+|..++ +.....++...+.. .++|+++|+||+|+.+.. ....+.. .......
T Consensus 94 ~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~-----~lg~~~~ 161 (456)
T 4dcu_A 94 QQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-----SLGFGEP 161 (456)
T ss_dssp HHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSG-----GGSSSSE
T ss_pred HHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHH-----HcCCCce
Confidence 8888999999999999998764 33344555565544 579999999999986431 1111111 1111135
Q ss_pred EEeecccCCCHHHHHHHHHHhhhcc
Q 030113 156 QACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 156 ~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
+++||++|.|++++++++.+.+...
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred EEeecccccchHHHHHHHHhhcccc
Confidence 7999999999999999999887643
No 144
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.91 E-value=2.2e-23 Score=151.31 Aligned_cols=132 Identities=16% Similarity=0.287 Sum_probs=97.7
Q ss_pred cccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCCC
Q 030113 48 TVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (183)
|.|+....+..+.+.+.+|||+|++.++..|..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4556666677788999999999999999999999999999999999999 778999999999998875556
Q ss_pred CCeEEEEEeCCCCCC------------------CCCHHHHHhhc-----CcCccC-CCceEEEEeecccCCCHHHHHHHH
Q 030113 118 HSVVLIFANKQDLKD------------------AMTPAEITDAL-----SLHSIK-NHDWHIQACSALTGDGLVDGLEWI 173 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~S~~~~~gi~~~~~~i 173 (183)
+.|+++++||.|+.. .....+..+.. ...... ...+.+++|||+++.||+++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 799999999999852 12333333322 111111 345789999999999999999999
Q ss_pred HHhhhc
Q 030113 174 SQRVTG 179 (183)
Q Consensus 174 ~~~~~~ 179 (183)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=7.1e-24 Score=158.39 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=102.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcCeEEEEEEcCCChhhHhhH--------Hhhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKNIRFEAWDVGGQERLRTSW--------ATYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~ 83 (183)
..++|+++|++|+|||||+|++.+..... ...|.......+..++..+.+|||||..+....+ ..+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 45899999999999999999998865432 1223334445667788999999999986654333 23578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTG 163 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 163 (183)
.+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+....... ... . .....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~-~--~~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLE-Y--PENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCC-C--CTTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHH-H--hccCCcEEEEECCCC
Confidence 8999999999998766543 2333333 2 36999999999986542211 111 1 113457999999999
Q ss_pred CCHHHHHHHHHHhhhccC
Q 030113 164 DGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 164 ~gi~~~~~~i~~~~~~~~ 181 (183)
.|++++++++.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999886543
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.3e-23 Score=156.96 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=107.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhh------------HH
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTS------------WA 79 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (183)
..++|+++|++|+|||||++++++....... .|.......+.+.+..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999988653222 2223334556778889999999997543221 13
Q ss_pred hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhcCcCccCCCceEEEE
Q 030113 80 TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT--PAEITDALSLHSIKNHDWHIQA 157 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (183)
.+++.+|++++|+|++++.+.... ++...+.. .++|+++|+||+|+.+... ..+..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 456789999999999987665432 22222222 4689999999999865422 2333333322222334567999
Q ss_pred eecccCCCHHHHHHHHHHhhhc
Q 030113 158 CSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 147
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.91 E-value=1.3e-23 Score=150.56 Aligned_cols=133 Identities=21% Similarity=0.286 Sum_probs=105.4
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|.|+....+..+.+.+++|||+||++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4677777788888999999999999999999999999999999999998 678899999999999887666
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhcCc-----------CccCC-----------CceEEEE
Q 030113 117 QHSVVLIFANKQDLKDA-----------------MTPAEITDALSL-----------HSIKN-----------HDWHIQA 157 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~-----------------~~~~~~~~~~~~-----------~~~~~-----------~~~~~~~ 157 (183)
.+.|+++++||.|+..+ ....+..+.+.. ..... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998531 112222221111 11111 3578999
Q ss_pred eecccCCCHHHHHHHHHHhhhc
Q 030113 158 CSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 158 ~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
|||+++.||+.+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=3.7e-24 Score=159.62 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=105.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|+..... ....|.......+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 456799999999999999999999543110 0123444555566777
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCccc---H---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRAR---I---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~ 132 (183)
+..+.+|||||++++...+..++..+|++++|+|++++.. | ......+..... .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999998632 1 122223222222 2455 999999999854
Q ss_pred CCC----HHHHHh----hcCcCccC-CCceEEEEeecccCCCHHHHHH
Q 030113 133 AMT----PAEITD----ALSLHSIK-NHDWHIQACSALTGDGLVDGLE 171 (183)
Q Consensus 133 ~~~----~~~~~~----~~~~~~~~-~~~~~~~~~S~~~~~gi~~~~~ 171 (183)
... ..+..+ .+...... ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 112222 11111111 1257899999999999999654
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=8.7e-23 Score=156.19 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=112.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQ 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (183)
.+..+|+++|+.++|||||+++|+... .. . ...|.......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 10 0 111222222344443 378999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNH 151 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 151 (183)
.++...+..+++.+|++++|+|++++.+......|..... .+.|+++|+||+|+.... ..+..+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999999999999999999999999877766665554442 368999999999997543 333333332211 112
Q ss_pred ceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 152 DWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 152 ~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
..+++++||++|.|++++++++++.+...
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 22489999999999999999999988653
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=1.4e-23 Score=153.15 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
+|+++|++++|||||+++|. ....|.+..+..+..++..+.+|||||++++...+...++.+|++++|+| ++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 99999999999999999998 44556666666677778899999999999998888888999999999999 543
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeE-EEEEe-CCCCCCCCCHH----HHHhhcCcCccCCCceEEEE--eeccc---CCCHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVV-LIFAN-KQDLKDAMTPA----EITDALSLHSIKNHDWHIQA--CSALT---GDGLV 167 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~v-ilv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~S~~~---~~gi~ 167 (183)
.+.....++..... .+.|. ++++| |+|+ +..... ++.+.+... ....+++++ +||++ ++|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 34444555544432 24666 88899 9999 432222 222222211 124578999 99999 99999
Q ss_pred HHHHHHHHhhh
Q 030113 168 DGLEWISQRVT 178 (183)
Q Consensus 168 ~~~~~i~~~~~ 178 (183)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988765
No 151
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=5.7e-25 Score=166.23 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=112.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
+.++|+++|++++|||||+++|.+..+... ..|..+....+.. .+..+.+|||||++.+...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 568899999999999999999987654321 1222233333333 456899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhcCcCccCCCceEEEEeecccCCCHHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT---PAEITDALSLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
+|++++...... ..+..... .+.|+++++||+|+.+... ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999986554333 33333332 3589999999999864321 122222111111112457899999999999999
Q ss_pred HHHHHHHhhh
Q 030113 169 GLEWISQRVT 178 (183)
Q Consensus 169 ~~~~i~~~~~ 178 (183)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999998765
No 152
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=6.8e-23 Score=157.01 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC--cc---------c-------ccCcccceeEEEEEc-----CeEEEEEEcCCCh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE--VV---------T-------THPTVGSNVEELVYK-----NIRFEAWDVGGQE 72 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~--~~---------~-------~~~~~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (183)
+..+|+|+|+.++|||||+++|+... .. . ...|.......+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997521 10 0 011222223344443 3789999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCc
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHD 152 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 152 (183)
++...+..+++.+|++++|+|++++.+......|..... .+.|+++|+||+|+.... ..+..+.+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 999999999999999999999998877666655554442 358999999999997643 333222222111 1112
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
.+++++||++|.|++++++++.+.+..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 248999999999999999999998865
No 153
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=5.9e-23 Score=143.78 Aligned_cols=162 Identities=13% Similarity=0.158 Sum_probs=106.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc-cc-cc---CcccceeEEEEEcCeEEEEEEcCCChhh-----------Hhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VT-TH---PTVGSNVEELVYKNIRFEAWDVGGQERL-----------RTS 77 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 77 (183)
..+.++|+|+|++|+|||||++++++... .. .. .|.........+.+.++.+|||||+.++ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999998763 22 11 3444555566778899999999997553 223
Q ss_pred HHhhccCCCEEEEEEeCCCcccHH-HHHHHHHHHhCCCCCCCCeEEEEEe-CCCCCCCCCHHH------------HHhhc
Q 030113 78 WATYYRGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSVVLIFAN-KQDLKDAMTPAE------------ITDAL 143 (183)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vilv~n-K~Dl~~~~~~~~------------~~~~~ 143 (183)
...+++.+|++++|+|+++..... .+..++....... ...|+++++| |+|+... .... +...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 344678999999999998633322 2334444443321 1356666666 9999743 2222 11122
Q ss_pred CcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 144 SLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 144 ~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.... ..+..+++||+++.|++++|+++.+.+....
T Consensus 176 ~~~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRI---CAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCE---EECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeE---EEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 1110 0011178999999999999999999887643
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=4.3e-24 Score=159.27 Aligned_cols=152 Identities=14% Similarity=0.196 Sum_probs=101.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.++.++|+++|++++|||||+++|+.. .+. ....|.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356799999999999999999999764 221 1123444445556677
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHH-------HHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIM-------KDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-------~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.+|||||++++...+..++..+|++++|+|+++ .+|+.. ...+...... .-.|+++++||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 8899999999999999999999999999999999998 556532 2222222111 1246899999999976
Q ss_pred CC-CH-------HHHHhhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 133 AM-TP-------AEITDALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 133 ~~-~~-------~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.. .. .++.+.+.........++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 31 11 122222222211122478999999999999754
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=5.8e-23 Score=149.48 Aligned_cols=162 Identities=22% Similarity=0.171 Sum_probs=106.1
Q ss_pred ceE-EEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCeEEEEEEcCCC---------hhhHhhHHhhcc
Q 030113 17 DYK-IIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNIRFEAWDVGGQ---------ERLRTSWATYYR 83 (183)
Q Consensus 17 ~~~-i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~ 83 (183)
.++ |+++|++|+|||||++++.+.... ...+|.+.....+.+.+..+.+|||+|. +.+...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 344 999999999999999999987652 2345555666778888889999999996 2233333 3578
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhh--cCcCccCCCceEEEEee
Q 030113 84 GTHAVIVVIDSTDRA--RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDA--LSLHSIKNHDWHIQACS 159 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S 159 (183)
.+|++++|+|++++. .......+ ...+......+.|+++|.||+|+............ +... ......+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEEE
Confidence 899999999999875 33333222 22222222346899999999998654311111111 0000 001244689999
Q ss_pred cccCCCHHHHHHHHHHhhhccC
Q 030113 160 ALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 160 ~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
|+++.|+++++++|.+.+....
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHhcccC
Confidence 9999999999999998776543
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.90 E-value=1.7e-23 Score=157.90 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCc--c--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEV--V--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~--~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++... . ....+.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 45679999999999999999999965411 0 0123444555667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHH------HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISI------MKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
...+.+|||||++++...+..++..+|++++|+|++++.++.. ....+...... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence 8999999999999999999999999999999999998643321 22222221111 22569999999999753
Q ss_pred CC--HHHHHhhc----CcCccCCCceEEEEeecccCCCHHH
Q 030113 134 MT--PAEITDAL----SLHSIKNHDWHIQACSALTGDGLVD 168 (183)
Q Consensus 134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~ 168 (183)
.. ..+..+.+ .........++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 21 12222222 1111122367899999999999874
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.90 E-value=1.2e-23 Score=161.35 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=108.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEE----------------EcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELV----------------YKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 73 (183)
.+.++|+++|++++|||||++++.+..+... .++.+..+.... +....+.+|||||+++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999987544322 223333332211 1122699999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCC---cccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCH--------------
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTD---RARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTP-------------- 136 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-------------- 136 (183)
|...+..+++.+|++++|+|+++ ++++..+. .+.. .+.|+++++||+|+......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99988888999999999999998 44444332 1211 46899999999998642110
Q ss_pred H-----------HHHhhcCcCcc----------CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 137 A-----------EITDALSLHSI----------KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
. ++.+.+..... ....++++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11111211110 134568999999999999999999998765
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=4e-23 Score=154.10 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=103.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCc---cc---------------------------------ccCcccceeEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEV---VT---------------------------------THPTVGSNVEEL 56 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~---~~---------------------------------~~~~~~~~~~~~ 56 (183)
..+..++|+++|++++|||||+++|++... .. ...|....+..+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 345669999999999999999999975431 00 012233334455
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT- 135 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~- 135 (183)
......+.+|||||++++...+..++..+|++++|+|++++... ....++...... ...|+++|+||+|+.+...
T Consensus 100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence 56788999999999999999999999999999999999986432 233333322221 1246999999999975321
Q ss_pred -HHHHHhhcC----cCccCCCceEEEEeecccCCCHHHH
Q 030113 136 -PAEITDALS----LHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 136 -~~~~~~~~~----~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
..+..+... ........++++++||++|.|++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 111222111 1110123578999999999999874
No 159
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=4.6e-23 Score=143.15 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=104.3
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCC--------hhhHhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQ--------ERLRTSW 78 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~ 78 (183)
......++|+++|.+|+|||||+|++++...... ..|...........+..+.+|||||. +.+...+
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3446789999999999999999999998775432 24445556667778999999999995 3333333
Q ss_pred Hhhc----cCCCEEEEEEeCCCcccHH-HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHH--------HhhcCc
Q 030113 79 ATYY----RGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEI--------TDALSL 145 (183)
Q Consensus 79 ~~~~----~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~--------~~~~~~ 145 (183)
..++ ..+|++++|+|+++....+ .+..++...... ...+.|+++++||.|+........+ ......
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 3333 8999999999998543222 233445444332 1235899999999999654222111 111111
Q ss_pred CccCCCceEEEEeecc---cCCCHHHHHHHHHHhhhcc
Q 030113 146 HSIKNHDWHIQACSAL---TGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 146 ~~~~~~~~~~~~~S~~---~~~gi~~~~~~i~~~~~~~ 180 (183)
. ...+.+|..++. ++.|++++++.+.+.+.++
T Consensus 175 ~---g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 C---GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp T---TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c---CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 1 112223333332 2689999999999888764
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.90 E-value=4.6e-23 Score=152.15 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=110.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC-------cc------------cccCcccceeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE-------VV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
+.++|+++|++++|||||+++|.+.. +. ....|.+.....+......+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999997631 11 111233333344555678999999999999998
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhcCcCccCC
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-----AEITDALSLHSIKN 150 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~ 150 (183)
.+..++..+|++++|+|+++..... ...++..+.. .++| +++++||+|+.+.... .++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999864332 2333333222 3577 7899999999742111 12222222222122
Q ss_pred CceEEEEeecccCCC----------HHHHHHHHHHhhhc
Q 030113 151 HDWHIQACSALTGDG----------LVDGLEWISQRVTG 179 (183)
Q Consensus 151 ~~~~~~~~S~~~~~g----------i~~~~~~i~~~~~~ 179 (183)
..++++++||++|.| ++++++.+.+.+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 346899999999764 89999999887753
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=1.2e-22 Score=150.45 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=112.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--------Cccc------------ccCcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--------EVVT------------THPTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
.+..++|+++|++++|||||+++|.+. .+.. ...|.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457799999999999999999999863 1111 12233444445556778999999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhcCcCc
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMT-PA----EITDALSLHS 147 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 147 (183)
+...+..++..+|++++|+|++++... ....++..+.. .+.| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999886533 33444444332 2577 899999999974211 11 1222222221
Q ss_pred cCCCceEEEEeecccCCC------------------HHHHHHHHHHhhh
Q 030113 148 IKNHDWHIQACSALTGDG------------------LVDGLEWISQRVT 178 (183)
Q Consensus 148 ~~~~~~~~~~~S~~~~~g------------------i~~~~~~i~~~~~ 178 (183)
......+++++||++|.| ++++++.+.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112346899999999987 8888888888765
No 162
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.7e-24 Score=142.55 Aligned_cols=129 Identities=28% Similarity=0.327 Sum_probs=94.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccC----CCEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRG----THAVI 89 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 89 (183)
..+.++|+++|++|+|||||++++.+..+.....+..... ...+....+.+|||||+..+...+..++.. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 3567999999999999999999999887543211111111 012256789999999999887777777765 89999
Q ss_pred EEEeCC-CcccHHHHHHHHHHHhCCC---CCCCCeEEEEEeCCCCCCCCCHHHHHhhc
Q 030113 90 VVIDST-DRARISIMKDELFRLLGHE---DLQHSVVLIFANKQDLKDAMTPAEITDAL 143 (183)
Q Consensus 90 ~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~vilv~nK~Dl~~~~~~~~~~~~~ 143 (183)
+|+|++ +..++.....|+..+.... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 999999 8888988888888776432 12469999999999998776665555544
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-23 Score=161.32 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc----------------------------------ccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------------------------------THPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++..... ...|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567999999999999999999998653211 123445555667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cH---HHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RI---SIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
..++.+|||||++++...+..++..+|++|+|+|++++. ++ ......+...... ...|+++|+||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccch
Confidence 899999999999999999999999999999999998742 00 1122222222221 22569999999999753
Q ss_pred CC--HHHHH----hhcCcCccCCCceEEEEeecccCCCHHHH
Q 030113 134 MT--PAEIT----DALSLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 134 ~~--~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
.. ..+.. ..+.........++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 21 11112 22211111223578999999999999865
No 164
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=3.8e-23 Score=149.59 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=92.2
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCC----------CcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDST----------DRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
+.+.+.+|||+|+++++..|..++++++++|+|||++ +.+++.+...|+..+.......+.|+++|+||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999998 778999999999999876555679999999999
Q ss_pred CCCCC----CC-------------------HHHHHhhcCcCc------c-----CCCceEEEEeecccCCCHHHHHHHHH
Q 030113 129 DLKDA----MT-------------------PAEITDALSLHS------I-----KNHDWHIQACSALTGDGLVDGLEWIS 174 (183)
Q Consensus 129 Dl~~~----~~-------------------~~~~~~~~~~~~------~-----~~~~~~~~~~S~~~~~gi~~~~~~i~ 174 (183)
|+..+ .. ..+..+...... . ....+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97421 00 111111111100 0 02345679999999999999999999
Q ss_pred Hhhhc
Q 030113 175 QRVTG 179 (183)
Q Consensus 175 ~~~~~ 179 (183)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 165
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=8e-23 Score=144.07 Aligned_cols=159 Identities=14% Similarity=0.227 Sum_probs=89.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc--c-------cCcccceeEEEEE--c--CeEEEEEEcCCCh-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT--T-------HPTVGSNVEELVY--K--NIRFEAWDVGGQE-------R 73 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~--~-------~~~~~~~~~~~~~--~--~~~~~~~D~~g~~-------~ 73 (183)
+...++|+++|.+|+|||||+|++++..... . .++.+........ + ...+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 3567999999999999999999987765322 1 4555555554444 2 2589999999962 2
Q ss_pred hHhhH-------Hhhcc-------------CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSW-------ATYYR-------------GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.... ..++. .+|+++++++.+... +......+...+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 22222 33333 368999999877532 22222333333332 6899999999998644
Q ss_pred CCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 134 MTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
.......+.+... ....+++++++|+++++|++++++++.+.++
T Consensus 160 ~e~~~~~~~i~~~-l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQIMKE-IQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHH-HHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHH-HHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3332222222111 1224556999999999999999999988654
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.88 E-value=8e-23 Score=153.16 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEEEEc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEELVYK 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~~~~ 59 (183)
.+..++|+++|++++|||||+++|++. .+. ....|....+..+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356799999999999999999999753 111 1224555556667778
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cHH---HHHHHHHHHhCCCCCCCC-eEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RIS---IMKDELFRLLGHEDLQHS-VVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~vilv~nK~Dl~~ 132 (183)
...+.+|||||++++...+..++..+|++++|+|++++. +|+ ....++..... .+. ++++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 899999999999999999999999999999999998752 111 22233322221 235 4999999999973
Q ss_pred CCC--HHHHHhhc----CcCccCCCceEEEEeecccCCCHHHH
Q 030113 133 AMT--PAEITDAL----SLHSIKNHDWHIQACSALTGDGLVDG 169 (183)
Q Consensus 133 ~~~--~~~~~~~~----~~~~~~~~~~~~~~~S~~~~~gi~~~ 169 (183)
... ..+..+.+ .........++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 11122211 11111112468999999999998743
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=8.4e-24 Score=158.72 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=107.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVV 91 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (183)
.+.++|+++|++++|||||++++.+..+... ..|.......+.+++..+.+|||||++.|...+..++..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999976543221 1222222233444667899999999999999988889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCc--cC--CCceEEEEeecccCCCHH
Q 030113 92 IDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHS--IK--NHDWHIQACSALTGDGLV 167 (183)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~S~~~~~gi~ 167 (183)
+|++++.... ....+..... .+.|+++++||+|+..... ..+.+.+.... .. ...++++++||++|.|++
T Consensus 82 Vda~~g~~~q-T~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQ-TIEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTT-THHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHH-HHHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 9998742211 1122222211 3689999999999864321 11222221110 01 124789999999999999
Q ss_pred HHHHHHHHh
Q 030113 168 DGLEWISQR 176 (183)
Q Consensus 168 ~~~~~i~~~ 176 (183)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998764
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.8e-22 Score=136.75 Aligned_cols=161 Identities=16% Similarity=0.180 Sum_probs=100.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc-----cCcccceeEEEEEcCeEEEEEEcCCC-----------hhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-----HPTVGSNVEELVYKNIRFEAWDVGGQ-----------ERLR 75 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~ 75 (183)
......++|+++|++|+|||||++++++..+... ..+..+....+.+.+..+.+|||||. ..+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 3445779999999999999999999998776432 23444555667778899999999993 3455
Q ss_pred hhHHhhccCCCEEEEEEeCCCcccHH-HHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH--------HHHhhcCcC
Q 030113 76 TSWATYYRGTHAVIVVIDSTDRARIS-IMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA--------EITDALSLH 146 (183)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~--------~~~~~~~~~ 146 (183)
..+..+++.+|++++|+|+++..... ....++....... ...|+++|+||+|+....... .+.+....
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~- 180 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI- 180 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH-
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH-
Confidence 55566677899999999997654421 1222222222110 236899999999986543222 12222111
Q ss_pred ccCCCceEEEEeecc-----cCCCHHHHHHHHHHhhhc
Q 030113 147 SIKNHDWHIQACSAL-----TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~-----~~~gi~~~~~~i~~~~~~ 179 (183)
.+.+++.++.. +..++.++++.+.+.+.+
T Consensus 181 ----~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 ----FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp ----HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 11235555444 347899999998887754
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=3e-22 Score=142.79 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=101.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccc-------cCcc-----------------c---ce---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT-------HPTV-----------------G---SN--------------- 52 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~-------~~~~-----------------~---~~--------------- 52 (183)
...++|+|+|.+|+|||||++++++..+.+. .++. + .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999998876311 1110 0 00
Q ss_pred ------------eEEEEE-cCeEEEEEEcCCCh-------------hhHhhHHhhccCCCEEE-EEEeCCCcccHHHHHH
Q 030113 53 ------------VEELVY-KNIRFEAWDVGGQE-------------RLRTSWATYYRGTHAVI-VVIDSTDRARISIMKD 105 (183)
Q Consensus 53 ------------~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (183)
...+.. ...++.+|||||.. .+...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111 13789999999953 45567778888888776 6999987644333323
Q ss_pred HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHh
Q 030113 106 ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQR 176 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~ 176 (183)
++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||+++.|++++++++.+.
T Consensus 184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 22 4689999999999875432 12211110 01111123579999999999999999998764
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=2.4e-21 Score=147.05 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=83.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--cc-----------------------cccCcccceeEEEEEcCeEEEEEEcC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--VV-----------------------TTHPTVGSNVEELVYKNIRFEAWDVG 69 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~D~~ 69 (183)
.+..+|+|+|++++|||||+++|+... .. ....+.......+.+++..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 01122333445677788999999999
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
|+.++...+..++..+|++++|+|++++... .....+... .. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~~---~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-RL---RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-TT---TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-HH---cCCCEEEEEcCcCCccc
Confidence 9999988888999999999999999876432 222233322 22 46899999999998754
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.87 E-value=4.1e-21 Score=130.26 Aligned_cols=162 Identities=16% Similarity=0.150 Sum_probs=98.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccCCc-ccccCccccee--EEEEEcCeEEEEEEcCCChh----------hHhhH
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV-VTTHPTVGSNV--EELVYKNIRFEAWDVGGQER----------LRTSW 78 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~ 78 (183)
+...+..+|+++|++|+|||||++++++..+ ....++.|... ..+...+ .+.+|||||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4456778999999999999999999998763 23344444332 2233333 688999999732 33333
Q ss_pred Hhhc---cCCCEEEEEEeCCCcccHHH--HHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhcCcCccCCCc
Q 030113 79 ATYY---RGTHAVIVVIDSTDRARISI--MKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE-ITDALSLHSIKNHD 152 (183)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 152 (183)
..++ ..++++++|+|++++.+... +..++.. .+.|++++.||+|+......+. +.............
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 3444 46799999999998765432 2222221 3588999999999764322111 11111111101134
Q ss_pred eEEEEeecccCCCHHHHHHHHHHhhhccC
Q 030113 153 WHIQACSALTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 153 ~~~~~~S~~~~~gi~~~~~~i~~~~~~~~ 181 (183)
..++++|++++.|++++++++.+.+.+.+
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 67899999999999999999998876543
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=2.4e-23 Score=156.36 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=91.9
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhccC--Ccc--------------------------------cccCcccceeEEE
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHLG--EVV--------------------------------TTHPTVGSNVEEL 56 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~~--~~~--------------------------------~~~~~~~~~~~~~ 56 (183)
....+..++|+++|++++|||||+++|+.. .+. ....|++..+..+
T Consensus 37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 344577899999999999999999998641 110 1123444445556
Q ss_pred EEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cHH---HHHHHHHHHhCCCCCCCCe-EEEEEeCCC
Q 030113 57 VYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RIS---IMKDELFRLLGHEDLQHSV-VLIFANKQD 129 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-vilv~nK~D 129 (183)
..++..+.+|||||+++|...+..++..+|++|+|+|++++. +|. .....+..... .++| +++++||+|
T Consensus 117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~D 192 (467)
T 1r5b_A 117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMD 192 (467)
T ss_dssp ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTT
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECcc
Confidence 667889999999999999999999999999999999999862 221 12222222211 3466 999999999
Q ss_pred CCCCC-CH---H----HHHhhcCcC-ccC-CCceEEEEeecccCCCHHHHH
Q 030113 130 LKDAM-TP---A----EITDALSLH-SIK-NHDWHIQACSALTGDGLVDGL 170 (183)
Q Consensus 130 l~~~~-~~---~----~~~~~~~~~-~~~-~~~~~~~~~S~~~~~gi~~~~ 170 (183)
+.... .. . ++.+.+... ... ...++++++||++|.|+.+++
T Consensus 193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 96421 11 1 122222111 111 126789999999999998754
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=2.6e-21 Score=155.29 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=109.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC-------cc------------cccCcccceeEEEEEcCeEEEEEEcCCChhh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE-------VV------------TTHPTVGSNVEELVYKNIRFEAWDVGGQERL 74 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (183)
.+..++|+++|++++|||||+++|.+.. +. ....|.......+......+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999997631 00 0111222233345556789999999999999
Q ss_pred HhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhcCcCcc
Q 030113 75 RTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQDLKDAMTP-----AEITDALSLHSI 148 (183)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~~~~~~-----~~~~~~~~~~~~ 148 (183)
...+..++..+|++|+|+|++++... ....++..+.. .++| +++++||+|+.+.... .++.+.+.....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 99999999999999999999986432 23333333321 2467 7899999999752111 122222222221
Q ss_pred CCCceEEEEeecccC--------CCHHHHHHHHHHhhh
Q 030113 149 KNHDWHIQACSALTG--------DGLVDGLEWISQRVT 178 (183)
Q Consensus 149 ~~~~~~~~~~S~~~~--------~gi~~~~~~i~~~~~ 178 (183)
....++++++||++| .|++++++++.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 223578999999999 579999999988765
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.9e-24 Score=164.33 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccCCcc----------------------------------cccCcccceeEEEEE
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLGEVV----------------------------------TTHPTVGSNVEELVY 58 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~ 58 (183)
..+..++|+++|++++|||||+++|++.... ....|.......+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456789999999999999999999532100 112233344445555
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc---cH---HHHHHHHHHHhCCCCCCCCe-EEEEEeCCCCC
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA---RI---SIMKDELFRLLGHEDLQHSV-VLIFANKQDLK 131 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-vilv~nK~Dl~ 131 (183)
.+..+.+|||||++++...+..++..+|++|+|+|++++. .+ ......+..... .++| +++|+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccc
Confidence 6789999999999999888888899999999999998642 11 111122222211 2354 89999999986
Q ss_pred CCCC--HH----HHHhhc-CcCccCCCceEEEEeecccCCCHH--------------HHHHHHHHhhh
Q 030113 132 DAMT--PA----EITDAL-SLHSIKNHDWHIQACSALTGDGLV--------------DGLEWISQRVT 178 (183)
Q Consensus 132 ~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~S~~~~~gi~--------------~~~~~i~~~~~ 178 (183)
+... .. ++...+ .........++++++||++|.|+. ++++.|.+.+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 5221 11 222222 222222246789999999999998 68888776554
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.86 E-value=1.1e-20 Score=147.66 Aligned_cols=114 Identities=23% Similarity=0.154 Sum_probs=87.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC--Cc------------c-------cccCcccceeEEEEEcCeEEEEEEcCCChh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG--EV------------V-------TTHPTVGSNVEELVYKNIRFEAWDVGGQER 73 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (183)
.+..+|+|+|++|+|||||+++++.. .+ . ....|.......+.+.+..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56799999999999999999999731 11 0 123455566667777899999999999999
Q ss_pred hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+...+..+++.+|++++|+|+++..+......|.. ... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998877665544433 322 36899999999998754
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.85 E-value=5.8e-20 Score=143.14 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=85.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc---------------------cccCcccceeEEEEEcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV---------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|+.|+|||||++++++.... ....+.......+......+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 356789999999999999999999843211 01123334455566788999999999999
Q ss_pred hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 73 RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
++...+..+++.+|++++|+|+++.-... ...++..... .+.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 99999999999999999999998764432 2234444332 368999999999987
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.8e-22 Score=146.03 Aligned_cols=162 Identities=15% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cc---------cCcccceeEEEEE--cC--eEEEEEEcCCC-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TT---------HPTVGSNVEELVY--KN--IRFEAWDVGGQ-------E 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~---------~~~~~~~~~~~~~--~~--~~~~~~D~~g~-------~ 72 (183)
....++|+|+|++|+|||||++++.+.... .. .++.+.....+.. .+ ..+.+|||||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 356699999999999999999998665322 11 1333333322222 22 47899999998 5
Q ss_pred hhHhhHH-------hhccCC-------------CEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWA-------TYYRGT-------------HAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.+...+. .+++.+ |+++|+++.+ ..++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 5544443 444332 3566666542 2345445444444432 4689999999999865
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
........+... ......+++++++||+++.| ++.|.++.+.+.+..|
T Consensus 189 ~~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 189 LKERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 422222111221 12233467899999999998 8888888887766544
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.84 E-value=2.7e-20 Score=133.63 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc-----Ccc---ccee---------------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-----PTV---GSNV--------------------------------- 53 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-----~~~---~~~~--------------------------------- 53 (183)
...++|+|+|++|+|||||+|++++..+.... ... ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999988752111 000 0000
Q ss_pred -------------------EE---EEEcCeEEEEEEcCCChh-------------hHhhHHhhccCCCEEEEEEeCCCcc
Q 030113 54 -------------------EE---LVYKNIRFEAWDVGGQER-------------LRTSWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 54 -------------------~~---~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
.. ......++.+|||||..+ +......++..+|++++|+|+++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 111346899999999653 4566778889999999999974322
Q ss_pred cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC--CCceEEEEeeccc---CCCHHHHHHHH
Q 030113 99 RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK--NHDWHIQACSALT---GDGLVDGLEWI 173 (183)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~---~~gi~~~~~~i 173 (183)
........+...+.. .+.|+++|+||+|+.+.... ..+.+...... ....++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 110111122222222 46899999999998654331 11111111111 2334555666777 89999999999
Q ss_pred HHhhhccC
Q 030113 174 SQRVTGKA 181 (183)
Q Consensus 174 ~~~~~~~~ 181 (183)
.+.+...+
T Consensus 257 ~~~~~~~~ 264 (315)
T 1jwy_B 257 ILYFKNHP 264 (315)
T ss_dssp HHHHHTCT
T ss_pred HHHHhCCC
Confidence 88876543
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=7.1e-20 Score=143.18 Aligned_cols=116 Identities=20% Similarity=0.152 Sum_probs=87.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc--CCcc-------------------cccCcccceeEEEEEcCeEEEEEEcCCC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL--GEVV-------------------TTHPTVGSNVEELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 71 (183)
...+..+|+|+|++|+|||||+++|+. +.+. ....|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 346779999999999999999999984 1110 1123444555667778899999999999
Q ss_pred hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 72 ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
.++...+..+++.+|++++|+|++++.+......| ..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999999987766554433 33322 36899999999998754
No 180
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.84 E-value=2.3e-19 Score=140.43 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC--cc-------------------cccCcccceeEEEEEcC-------eEEEE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE--VV-------------------TTHPTVGSNVEELVYKN-------IRFEA 65 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~--~~-------------------~~~~~~~~~~~~~~~~~-------~~~~~ 65 (183)
..+..+|+|+|+.++|||||+++|+... +. ....|+......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999996421 11 01123333344555555 89999
Q ss_pred EEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 66 WDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
|||||+.+|...+..+++.+|++|+|+|+++....... ..|..... .+.|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999987554333 23333322 36899999999998653
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=2.6e-20 Score=145.68 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=105.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccc--------------ee---------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGS--------------NV--------------------------- 53 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~--------------~~--------------------------- 53 (183)
...++|+|+|++|+|||||+|+|++..........++ +.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 4679999999999999999999998775432211111 00
Q ss_pred ----------------EEEEEcC----eEEEEEEcCCChh---hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHH
Q 030113 54 ----------------EELVYKN----IRFEAWDVGGQER---LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRL 110 (183)
Q Consensus 54 ----------------~~~~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (183)
..+.+.. ..+.+|||||... ....+..+++++|++++|+|++++.+......+. ..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-NY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-HH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-HH
Confidence 0000100 4689999999654 3456677889999999999999887766554333 23
Q ss_pred hCCCCCCCCeEEEEEeCCCCCCCC-----CHHH-------HHh----hcCcCcc----CCCceEEEEeecc---------
Q 030113 111 LGHEDLQHSVVLIFANKQDLKDAM-----TPAE-------ITD----ALSLHSI----KNHDWHIQACSAL--------- 161 (183)
Q Consensus 111 ~~~~~~~~~~vilv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~----~~~~~~~~~~S~~--------- 161 (183)
+.. .+.|+++|+||+|+.... ...+ +.+ .+..... .....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 222 357899999999985431 1001 111 1111100 0123469999999
Q ss_pred -----cCCCHHHHHHHHHHhhhc
Q 030113 162 -----TGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 162 -----~~~gi~~~~~~i~~~~~~ 179 (183)
++.|++++++++.+.+.+
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 182
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=1.4e-20 Score=137.75 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=104.8
Q ss_pred CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCC----------cccHHHHHHHHHHHhCCCCC
Q 030113 47 PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTD----------RARISIMKDELFRLLGHEDL 116 (183)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (183)
+|+|+....+..+++.+++|||+|+++++..|..++++++++|+|||+++ .++|.+...|+..+......
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 46777777788889999999999999999999999999999999999999 88999999999999887656
Q ss_pred CCCeEEEEEeCCCCCCCCC--------------------------------HHHHHhhc----CcCc----cCCCceEEE
Q 030113 117 QHSVVLIFANKQDLKDAMT--------------------------------PAEITDAL----SLHS----IKNHDWHIQ 156 (183)
Q Consensus 117 ~~~~vilv~nK~Dl~~~~~--------------------------------~~~~~~~~----~~~~----~~~~~~~~~ 156 (183)
.+.|++||+||.|+..... ..+..... .... .....+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 7899999999999732100 01111110 0000 012356788
Q ss_pred EeecccCCCHHHHHHHHHHhhhc
Q 030113 157 ACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 157 ~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+|||+++.||+++|+++.+.+..
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887764
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=6.5e-20 Score=128.41 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccccc----CcccceeEEEEEcCeEEEEEEcCCChhhHhhHHhhcc-------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH----PTVGSNVEELVYKNIRFEAWDVGGQERLRTSWATYYR------- 83 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------- 83 (183)
.+.++|+++|++|+|||||++++++....... .+.......+...+..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 47899999999999999999999988753322 2444555566778899999999998766443333222
Q ss_pred --CCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCC-CCCCeEEEEEeCCCCCC
Q 030113 84 --GTHAVIVVIDSTDRARISIMK-DELFRLLGHED-LQHSVVLIFANKQDLKD 132 (183)
Q Consensus 84 --~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~~vilv~nK~Dl~~ 132 (183)
.+|++++|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 679999999987643 33222 23333222111 11258999999999853
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=4.6e-19 Score=130.65 Aligned_cols=159 Identities=22% Similarity=0.242 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc--c-ccCcccceeEEEEEcC-eEEEEEEcCCChhh-------HhhHHhhccCCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV--T-THPTVGSNVEELVYKN-IRFEAWDVGGQERL-------RTSWATYYRGTH 86 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~--~-~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (183)
-.|+++|++|+|||||++++++.... . ...+...+...+...+ ..+.+||+||.... ........+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35789999999999999999886421 1 1123334444455554 78999999996321 112223456799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCC
Q 030113 87 AVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDG 165 (183)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~g 165 (183)
.+++++|++ ..++..+..+..+...... ....|.++++||+|+.......++.+.+. ..+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 5556666655555443210 12478999999999865411122222221 2245699999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030113 166 LVDGLEWISQRVTGKAP 182 (183)
Q Consensus 166 i~~~~~~i~~~~~~~~~ 182 (183)
++++++++.+.+.+.++
T Consensus 312 i~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 312 LPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999876553
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.80 E-value=3.4e-18 Score=130.42 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=85.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC------------------cc-------cccCcccceeEEEEEcCeEEEEEEcCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE------------------VV-------TTHPTVGSNVEELVYKNIRFEAWDVGG 70 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~g 70 (183)
+..+|+|+|+.++|||||..+|+... .. +...|+......+.+++..+.++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 56899999999999999999985210 11 122455566677889999999999999
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+.+|.......++-+|++++|+|+.++-.-... ..|..... .++|.++++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999877433332 33344333 46999999999998643
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.79 E-value=1.4e-19 Score=131.73 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=94.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc-------Cc----------------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-------PT---------------------------------------- 48 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~-------~~---------------------------------------- 48 (183)
..++|+|+|.+|+|||||+++|++..+.+.. ++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999998763111 11
Q ss_pred ---cccee----EEEEE-cCeEEEEEEcCCCh-------------hhHhhHHhhccCCCEEEE-EEeCCCcccHHHHHHH
Q 030113 49 ---VGSNV----EELVY-KNIRFEAWDVGGQE-------------RLRTSWATYYRGTHAVIV-VIDSTDRARISIMKDE 106 (183)
Q Consensus 49 ---~~~~~----~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~~ 106 (183)
.++.. ..+.. ...++.+|||||.. .+...+..++..++.+++ |.|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00000 01111 24689999999952 345566777776665554 6666543221112122
Q ss_pred HHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 107 LFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 107 ~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..+ . ..+.|+++|+||+|+.+... ..+..+.. .........+++++||+++.|++++++++.+
T Consensus 190 ~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh-C---cCCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3232 2 24689999999999875432 12221111 1111122357899999999999999998876
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=2.7e-19 Score=130.63 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-Cccc---------------------------------------------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-PTVG--------------------------------------------- 50 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-~~~~--------------------------------------------- 50 (183)
-.+|+|+|++|+|||||++++.+..+.+.. .+..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 359999999999999999999997752211 1000
Q ss_pred -------c--eeEEEE---EcCeEEEEEEcCCChhh-------------HhhHHhhccCCCEEEEEEeCCCcccHHHHHH
Q 030113 51 -------S--NVEELV---YKNIRFEAWDVGGQERL-------------RTSWATYYRGTHAVIVVIDSTDRARISIMKD 105 (183)
Q Consensus 51 -------~--~~~~~~---~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 105 (183)
+ ....+. .....+.+|||||..++ ......+++++|++++|+|..+.........
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 0 000111 12457899999997665 6677888999999999998765432221111
Q ss_pred HHHHHhCCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHH
Q 030113 106 ELFRLLGHEDLQHSVVLIFANKQDLKDAMT-PAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEW 172 (183)
Q Consensus 106 ~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~ 172 (183)
.+... ....+.|+++|+||+|+.+... ..+..+.. ....+.+++++|+..+.++++.+..
T Consensus 194 ~l~~~---~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 194 KISRE---VDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHH---SCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHH---hcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 12222 2234689999999999875432 11211111 1234457899999988887765443
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=8.7e-19 Score=123.21 Aligned_cols=118 Identities=10% Similarity=0.069 Sum_probs=78.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcccccC----cccceeEEEEEcCeEEEEEEcCCChhhHh-------hHHhh--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHP----TVGSNVEELVYKNIRFEAWDVGGQERLRT-------SWATY-- 81 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 81 (183)
.+.++|+++|++|+|||||++++++..+..... +...........+..+.+|||||..++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467999999999999999999999887543222 22233344566788999999999865432 22222
Q ss_pred ccCCCEEEEEEeCCCcccHHHHH-HHHHHHhCCCC-CCCCeEEEEEeCCCCCCC
Q 030113 82 YRGTHAVIVVIDSTDRARISIMK-DELFRLLGHED-LQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~~vilv~nK~Dl~~~ 133 (183)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998653 333322 33333322111 112699999999998643
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=2.4e-20 Score=137.10 Aligned_cols=80 Identities=29% Similarity=0.247 Sum_probs=47.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-ccc--CcccceeEEEE---------------------Ec---CeEEEEEEcCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-TTH--PTVGSNVEELV---------------------YK---NIRFEAWDVGG 70 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~~~--~~~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (183)
++|+++|.+|+|||||+|++.+.... ... .|...+..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987621 111 22222222111 11 36799999999
Q ss_pred Chhh----HhhH---HhhccCCCEEEEEEeCCCc
Q 030113 71 QERL----RTSW---ATYYRGTHAVIVVIDSTDR 97 (183)
Q Consensus 71 ~~~~----~~~~---~~~~~~~d~ii~v~d~~~~ 97 (183)
..+. .... ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7531 2222 2456899999999999875
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.76 E-value=2.4e-19 Score=130.50 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=95.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC------Ccc--ccc---Cc------------------ccceeE----------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG------EVV--TTH---PT------------------VGSNVE---------- 54 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~------~~~--~~~---~~------------------~~~~~~---------- 54 (183)
..+..+|+++|++|+|||||++++... ... ... +. .+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 356789999999999999999998532 100 000 00 000000
Q ss_pred ----------EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 55 ----------ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 55 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
.+...+..+.+|||||.... .......+|++++|+|+.....+..+. ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 00124578999999995432 223458899999999987654331111 11134689999
Q ss_pred EeCCCCCCCCCHHHHHhhcCc----Cc--cCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 125 ANKQDLKDAMTPAEITDALSL----HS--IKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 125 ~nK~Dl~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
+||+|+.+..........+.. .. ......+++++||++|+|++++++++.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998643222221122211 10 00124579999999999999999999988754
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=112.68 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=116.8
Q ss_pred hHHHhhhcCCCcceEEEEEcCC-CCCHHHHHHHhccCCc-cc----c-c--Ccc--cceeE-----EEEE----------
Q 030113 5 VSKFWFMLFPGKDYKIIIVGLD-NAGKTTTLYKLHLGEV-VT----T-H--PTV--GSNVE-----ELVY---------- 58 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~i~viG~~-~~GKStl~~~l~~~~~-~~----~-~--~~~--~~~~~-----~~~~---------- 58 (183)
+.+|++++.++..+++++.||. ..=+.+|+.++...+. .+ . . .-+ |+.+. .++.
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 3578899999999999999964 2345578887765541 11 0 0 011 11110 1111
Q ss_pred -c-----C----eEEEEE------EcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHH---HHHhCCCC-CCC
Q 030113 59 -K-----N----IRFEAW------DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDEL---FRLLGHED-LQH 118 (183)
Q Consensus 59 -~-----~----~~~~~~------D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (183)
+ + -++-.. +.+||.+++..|..|++++|++|||+|.+|.+.++ ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 0 0 122222 33489999999999999999999999999887654 55555 44554432 367
Q ss_pred CeEEEEEeCC-CCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 119 SVVLIFANKQ-DLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 119 ~~vilv~nK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
.|++|+.||. |+.......++.+.++.... ...+.+..|||++|+|+.+.++|+.+.+..+++
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~~ 226 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 226 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC--
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhcC
Confidence 9999999995 78877888999999987765 478999999999999999999999999887654
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.7e-19 Score=127.38 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=80.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC-Cccccc---------CcccceeEEEEE----cCeEEEEEEcCCC-------h
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG-EVVTTH---------PTVGSNVEELVY----KNIRFEAWDVGGQ-------E 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~-~~~~~~---------~~~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (183)
....++|+|+|++|+|||||++++.+. .++... ++.......+.. ....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 456699999999999999999998775 333221 222222222222 2468999999997 4
Q ss_pred hhHhhHH-------hhccC-------------CCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 73 RLRTSWA-------TYYRG-------------THAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 73 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.+..... .++.. +++++|+.+++.. +++.....+...+. ...|+++|+||.|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 4433332 33322 3446666665421 23333222222222 3578999999999864
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
........+.. .......+++++++||+++ |++++|.++.+.+.+..|
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32211111111 1111223567999999999 999999999998876654
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.74 E-value=3.4e-18 Score=116.79 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=93.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-------ccCcc----------cceeEEE------------------EE
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-------THPTV----------GSNVEEL------------------VY 58 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-------~~~~~----------~~~~~~~------------------~~ 58 (183)
..+..+|+++|++|+|||||++++++..... ..+.. +.....+ ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 3466899999999999999999997642110 00000 1111111 11
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--MTP 136 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~~~ 136 (183)
....+.+|||+|+..... .+....+.+++|+|+++.... ...+ ... .+.|+++|+||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence 345789999999521111 111356899999999765421 1111 111 13678999999998532 234
Q ss_pred HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 137 AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
.++.+.+... ....+++++|+++|.|++++++++.+.+...
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4444433221 2346899999999999999999999887654
No 194
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1.9e-18 Score=123.12 Aligned_cols=134 Identities=18% Similarity=0.103 Sum_probs=99.5
Q ss_pred HHHHHhccCCcc--cccCcccceeEEEEE-cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHH
Q 030113 32 TTLYKLHLGEVV--TTHPTVGSNVEELVY-KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDEL 107 (183)
Q Consensus 32 tl~~~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (183)
+++.+++.+.|. .+.+|+|..+. ... .+.++++||+ ++++..++..+++++|++|+|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888775 36688885544 332 2337999999 8999999999999999999999999987 688888887
Q ss_pred HHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 108 FRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 108 ~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+.. .++|+++|+||+|+.+.....+..+..... ... ++++++||++|.|++++|+++..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76543 469999999999996542211122222111 111 57999999999999999988754
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=120.72 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=88.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--------cccCc---------------------ccceeE-----------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--------TTHPT---------------------VGSNVE----------- 54 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--------~~~~~---------------------~~~~~~----------- 54 (183)
.....|+++|++|+|||||+|++.+.... ...++ ......
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999752100 00000 000000
Q ss_pred ---------EEEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEE
Q 030113 55 ---------ELVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFA 125 (183)
Q Consensus 55 ---------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~ 125 (183)
.+...+..+.++||+|.... .......+|.+++|+|++.+.....+.. .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 00124568899999995322 2334678999999999986532211111 11 235789999
Q ss_pred eCCCCCCCCCH----HHHHhhcCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 126 NKQDLKDAMTP----AEITDALSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 126 nK~Dl~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
||+|+.+.... .++...+..... .....+++.+|++++.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99998532111 112222221110 012457899999999999999999988653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=1.8e-17 Score=132.08 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=85.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCC------------cc-------cccCcccceeEEEEEc---------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGE------------VV-------TTHPTVGSNVEELVYK--------------- 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~------------~~-------~~~~~~~~~~~~~~~~--------------- 59 (183)
..+..+|+|+|+.++|||||+++++... +. ....|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999997531 11 0112444444444443
Q ss_pred -CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC
Q 030113 60 -NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~ 131 (183)
+..+.+|||||+.++...+..+++.+|++|+|+|++++.++.....|.. ... .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999999877766544433 322 358999999999975
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=2.5e-17 Score=125.78 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=79.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCcc--c--ccCcccceeEEEEE--------------------------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVV--T--THPTVGSNVEELVY-------------------------------- 58 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~--~--~~~~~~~~~~~~~~-------------------------------- 58 (183)
...++|+|+|.+|+|||||+|+|++..+. . ..++... ...+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCCT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 35689999999999999999999998753 1 1111111 000000
Q ss_pred -------cC---eEEEEEEcCCChh-----------hHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCC
Q 030113 59 -------KN---IRFEAWDVGGQER-----------LRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQ 117 (183)
Q Consensus 59 -------~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (183)
.. ..+.+|||||... +...+..++..+|++++|+|+++.........++..+.. .
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~ 217 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----H 217 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----C
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----c
Confidence 00 3689999999764 456677788999999999999875444445555544422 3
Q ss_pred CCeEEEEEeCCCCCCC
Q 030113 118 HSVVLIFANKQDLKDA 133 (183)
Q Consensus 118 ~~~vilv~nK~Dl~~~ 133 (183)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 5889999999998754
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=123.42 Aligned_cols=158 Identities=14% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccc---------cCcccceeEEEEE----cCeEEEEEEcCCChhhH-----
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---------HPTVGSNVEELVY----KNIRFEAWDVGGQERLR----- 75 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~D~~g~~~~~----- 75 (183)
..-.++|+|+|++|+|||||++.|++..++.. .++.+.....+.. ....+.+||++|.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 34568999999999999999999998765321 1122211111111 13478999999975431
Q ss_pred --hh-------H-----------HhhccCCC--EEEEEEeCCCcccHHHHH-HHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 76 --TS-------W-----------ATYYRGTH--AVIVVIDSTDRARISIMK-DELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 76 --~~-------~-----------~~~~~~~d--~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
.. . ..++.+++ +++|+.+++. .+++... .++..+ . .+.|+|+|+||+|+..
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 11 0 12234444 4555554431 2344443 344443 2 2689999999999864
Q ss_pred CCCHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 133 AMTPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
........+... ......+++++++|++++.++++++..+.+.++
T Consensus 182 ~~ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 322222111111 111223567999999999999998888776543
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.70 E-value=1.5e-17 Score=129.05 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC--C------------ccc-------ccCcccceeEEEEEcCeEEEEEEcCCChhhHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG--E------------VVT-------THPTVGSNVEELVYKNIRFEAWDVGGQERLRT 76 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~--~------------~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (183)
.+|+|+|+.++|||||..+|+.. . +.. ...|+......+.+++..+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 57899999999999999998521 0 000 12344444556677889999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhcCcC-------
Q 030113 77 SWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA---EITDALSLH------- 146 (183)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~---~~~~~~~~~------- 146 (183)
.+...++-+|++++|+|+.++-.-. ....|..... .++|.++++||+|........ ++.+.+...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9999999999999999998763222 2233333333 358889999999976443222 111111100
Q ss_pred -------------------------------------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 147 -------------------------------------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 147 -------------------------------------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
.....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0011235788999999999999999999876
Q ss_pred hc
Q 030113 178 TG 179 (183)
Q Consensus 178 ~~ 179 (183)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.70 E-value=2.5e-16 Score=123.13 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=97.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc--Ccc--------------------------------------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTV-------------------------------------------- 49 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~-------------------------------------------- 49 (183)
..++|+|+|.+++|||||+|++.+..+.+.. .+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4589999999999999999999987652111 000
Q ss_pred ----cce----eEEEEE-cCeEEEEEEcCCChh-------------hHhhHHhhc-cCCCEEEEEEeCCCcccHHHHHHH
Q 030113 50 ----GSN----VEELVY-KNIRFEAWDVGGQER-------------LRTSWATYY-RGTHAVIVVIDSTDRARISIMKDE 106 (183)
Q Consensus 50 ----~~~----~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~ 106 (183)
++. ...+.. ...++.++||||-.. ....+..++ ..+|++++|+|++.+..-......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 000 011111 234689999999332 334445555 578999999999865322222122
Q ss_pred HHHHhCCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 107 LFRLLGHEDLQHSVVLIFANKQDLKDAMTP-AEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 107 ~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
+..+ .. .+.|+++|+||+|+.+.... ..+.. ...........+++.+||++|.|++++++.+.+
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222 22 46899999999998754332 12211 111111224457899999999999999999886
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.69 E-value=1e-17 Score=121.24 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=66.5
Q ss_pred cCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHH-
Q 030113 59 KNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPA- 137 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~- 137 (183)
.+..+.++||||....... ....+|++++|+|++....+..+.. .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 3678999999996654332 3588999999999975532111100 00 136789999999986432222
Q ss_pred ---HHHhhcCcCcc--CCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 138 ---EITDALSLHSI--KNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
++.+.+..... .....+++++||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111110 111357999999999999999999988764
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.69 E-value=4.1e-17 Score=114.12 Aligned_cols=118 Identities=14% Similarity=-0.078 Sum_probs=70.6
Q ss_pred eEEEEEEcCCChhhHhhH------HhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC
Q 030113 61 IRFEAWDVGGQERLRTSW------ATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM 134 (183)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~ 134 (183)
..+.+|||||+....... ...+.+ +++++++|+....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 489999999987654321 234566 8999999986443322222111111000011357899999999986542
Q ss_pred CHHHHHhhcCc------C-------------------ccCCCceEEEEeecccCCCHHHHHHHHHHhhhc
Q 030113 135 TPAEITDALSL------H-------------------SIKNHDWHIQACSALTGDGLVDGLEWISQRVTG 179 (183)
Q Consensus 135 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~ 179 (183)
...++.+.+.. . .......+++++||++++|++++++++.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22112221100 0 000122468999999999999999999987754
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1e-15 Score=111.28 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=77.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCcc---cccCcccceeEEEEEcCeEEEEEEcCCChh-------hHhhHHhhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVV---TTHPTVGSNVEELVYKNIRFEAWDVGGQER-------LRTSWATYYRGT 85 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 85 (183)
...+|+++|.||+|||||+|+|.+.... ....|.......+.+.+.+++++||||-.. ........++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4479999999999999999999886532 134566677777888999999999999321 223445567889
Q ss_pred CEEEEEEeCCCcccH-HHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 86 HAVIVVIDSTDRARI-SIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 86 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
|++++|+|++++..- ..+...+.... ......|.+++.||.|.
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 999999999987432 22223332221 11123556666777764
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.67 E-value=3.2e-15 Score=117.53 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=79.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC--------------cc-------cccCcccceeEEEEEc-------CeEEEEE
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE--------------VV-------TTHPTVGSNVEELVYK-------NIRFEAW 66 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~--------------~~-------~~~~~~~~~~~~~~~~-------~~~~~~~ 66 (183)
.+-.+|+|+|+..+|||||..+|+... +. +...|+......+.++ +..++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 355799999999999999999885211 00 0112333344445553 5789999
Q ss_pred EcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 67 DVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
|||||.+|.......++-+|++|+|+|+.++-.-. ....|..... .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999998764322 2233333333 3589999999999754
No 205
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=110.82 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=89.3
Q ss_pred cCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHH---HHhCCCC-CCCCeEEEEEeC-CCCCCCCCHHHHHhh
Q 030113 68 VGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELF---RLLGHED-LQHSVVLIFANK-QDLKDAMTPAEITDA 142 (183)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~vilv~nK-~Dl~~~~~~~~~~~~ 142 (183)
.+||.+.+..|..|++++|++|||+|.+|.++++ ....+. .++.... ..+.|++|+.|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4689999999999999999999999999988754 334332 4444321 357899999997 588888888999999
Q ss_pred cCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhccCC
Q 030113 143 LSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGKAP 182 (183)
Q Consensus 143 ~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~~~ 182 (183)
++..... ..+.+..|||.+|+|+.|.++|+.+.+.++.+
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~~ 311 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC---
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhcC
Confidence 9877654 78999999999999999999999999877653
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=4.4e-15 Score=107.46 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc-c--ccCcccceeEEEEEcC-----------------eEEEEEEcCCChhhH--
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV-T--THPTVGSNVEELVYKN-----------------IRFEAWDVGGQERLR-- 75 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~-~--~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~-- 75 (183)
++|+++|.+|+|||||+|++.+.... . ..+|.+.+...+.+.+ ..+++|||||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986631 1 1234444444444433 579999999986542
Q ss_pred -----hhHHhhccCCCEEEEEEeCCC
Q 030113 76 -----TSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 76 -----~~~~~~~~~~d~ii~v~d~~~ 96 (183)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 233456789999999999986
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=2.2e-15 Score=103.09 Aligned_cols=152 Identities=24% Similarity=0.173 Sum_probs=86.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCccc-ccCcccc----------------eeEEEEEc-----------------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVT-THPTVGS----------------NVEELVYK----------------- 59 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~-~~~~~~~----------------~~~~~~~~----------------- 59 (183)
..+.++|+++|++|+|||||+++++...+.. ..++++. ....+..+
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 3567999999999999999999998654322 1111111 11111100
Q ss_pred ---CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC--C
Q 030113 60 ---NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA--M 134 (183)
Q Consensus 60 ---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~--~ 134 (183)
...+.++|++|.-... ..+-...+..+.++|........ ...... ...|.++|+||+|+.+. .
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~---~~~~~~------~~~~~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI---EKHPGI------MKTADLIVINKIDLADAVGA 182 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT---TTCHHH------HTTCSEEEEECGGGHHHHTC
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH---hhhhhH------hhcCCEEEEeccccCchhHH
Confidence 1145566666531110 01112345566677753221110 000111 13677999999998542 2
Q ss_pred CHHHHHhhcCcCccCCCceEEEEeecccCCCHHHHHHHHHHhhhcc
Q 030113 135 TPAEITDALSLHSIKNHDWHIQACSALTGDGLVDGLEWISQRVTGK 180 (183)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~~~ 180 (183)
...+..+.+... ....+++++||++|.|++++|+++.+.+...
T Consensus 183 ~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 183 DIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp CHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 333333333211 2345899999999999999999999887653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=4.3e-15 Score=107.29 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=88.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc------CCcc--c--cc--Cc----------cc-----ceeEE-----------
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL------GEVV--T--TH--PT----------VG-----SNVEE----------- 55 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~------~~~~--~--~~--~~----------~~-----~~~~~----------- 55 (183)
-.+...++++|++|+|||||++.+.+ +... . .. .. .+ .....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35667899999999999999999973 2210 0 00 00 00 00000
Q ss_pred -----------EEEcCeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEE
Q 030113 56 -----------LVYKNIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIF 124 (183)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv 124 (183)
+...+..+.++||+|...-.. .....+|.+++|+|+........+.... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 112467899999999654322 2347899999999986543211111111 12345778
Q ss_pred EeCCCCCCCCC-----HHHHHhhcCcCccC--CCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 125 ANKQDLKDAMT-----PAEITDALSLHSIK--NHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 125 ~nK~Dl~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
+||+|+..... .+++...+...... ....+++.+|++++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 11222222111100 01346888999999999999999988654
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=4.5e-14 Score=102.69 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc-cc--ccCcccceeEEEEE---------------------cCeEEEEEEcCCChh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV-VT--THPTVGSNVEELVY---------------------KNIRFEAWDVGGQER 73 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~-~~--~~~~~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (183)
++|+++|.+|+|||||++++.+... .. ...|...+...... ....+++|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5789999999999999999987531 11 11233333322222 245799999999754
Q ss_pred h-------HhhHHhhccCCCEEEEEEeCCC
Q 030113 74 L-------RTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 74 ~-------~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
. ......+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2344556899999999999986
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=98.15 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=52.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc---ccCcccceeEEEEEc-----------------CeEEEEEEcCCChhh
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT---THPTVGSNVEELVYK-----------------NIRFEAWDVGGQERL 74 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (183)
....+|+++|.+|+|||||++++.+..... ...|...+...+.+. ...+++|||||..+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999875421 223344444444432 235999999997654
Q ss_pred Hh-------hHHhhccCCCEEEEEEeCCCcc
Q 030113 75 RT-------SWATYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 75 ~~-------~~~~~~~~~d~ii~v~d~~~~~ 98 (183)
.. .+..+++++|++++|+|+++..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 32 5677889999999999998643
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.30 E-value=2e-12 Score=92.10 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=71.7
Q ss_pred ChhhHhhHHhhccCCCEEEEEEeCCCcc-cHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccC
Q 030113 71 QERLRTSWATYYRGTHAVIVVIDSTDRA-RISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIK 149 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 149 (183)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+........+.... ..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~--~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI--YR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH--HH
Confidence 6666677778899999999999999886 78877787775533 46999999999999653210111111111 11
Q ss_pred CCceEEEEeecccCCCHHHHHHHHHH
Q 030113 150 NHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 150 ~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
..+++++++||+++.|++++++.+..
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 12457999999999999999987654
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.23 E-value=2.4e-11 Score=91.63 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=87.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc------cCCccc----c-cC-----------cccceeEEE----------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH------LGEVVT----T-HP-----------TVGSNVEEL---------------- 56 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~------~~~~~~----~-~~-----------~~~~~~~~~---------------- 56 (183)
.+...|+++|.+|+||||++++|+ +....- . .+ ..++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 446789999999999999999997 433210 0 00 001111110
Q ss_pred -EEcCeEEEEEEcCCChhh----HhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeE-EEEEeCC
Q 030113 57 -VYKNIRFEAWDVGGQERL----RTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVV-LIFANKQ 128 (183)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~v-ilv~nK~ 128 (183)
...+..+.++||||.... ....... ...+|.+++|+|+............+... .|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~--------~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDK--------VDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHH--------HCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhh--------cCceEEEEeCC
Confidence 114678999999996532 1111111 23789999999998764322222222221 454 8999999
Q ss_pred CCCCCCCH-HHHHhhcCcCc--------cC--CCceEEEEeecccCCC-HHHHHHHHHHh
Q 030113 129 DLKDAMTP-AEITDALSLHS--------IK--NHDWHIQACSALTGDG-LVDGLEWISQR 176 (183)
Q Consensus 129 Dl~~~~~~-~~~~~~~~~~~--------~~--~~~~~~~~~S~~~~~g-i~~~~~~i~~~ 176 (183)
|....... .......+.-. .. ....+...+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98644321 22222221100 00 0111245579999999 99999998865
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=9.3e-11 Score=85.92 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=59.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----ccCcccceeEEEEEcC-----------------eEEEEEEcCCC--
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----THPTVGSNVEELVYKN-----------------IRFEAWDVGGQ-- 71 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~-- 71 (183)
.+..+++++|++|+|||||+|++.+..... ...+...+...+...+ ..+.+||+||.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 456899999999999999999999865411 2224444445555543 46899999993
Q ss_pred -----hhhHhhHHhhccCCCEEEEEEeCCC
Q 030113 72 -----ERLRTSWATYYRGTHAVIVVIDSTD 96 (183)
Q Consensus 72 -----~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (183)
+.+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2244456677889999999999874
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=2.9e-10 Score=83.93 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=73.5
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCcccc---cCcccceeEE--EEEc--C--eEEEEEEcCCChhh------
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTT---HPTVGSNVEE--LVYK--N--IRFEAWDVGGQERL------ 74 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~---~~~~~~~~~~--~~~~--~--~~~~~~D~~g~~~~------ 74 (183)
....+...++++|+|++|+|||||++.+++...... ....+..... +... . ..+.++|++|-...
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 344455567799999999999999999988653221 1111111111 1111 1 36889999974211
Q ss_pred --------HhhH----Hhh---------ccCC--CE-EEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 75 --------RTSW----ATY---------YRGT--HA-VIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 75 --------~~~~----~~~---------~~~~--d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
...+ ..+ ..++ |+ ++++.|...+- ......+...+. .+.|+|+|.||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l--~~~Dieilk~L~----~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL--KSLDLVTMKKLD----SKVNIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC--CHHHHHHHHHHh----hCCCEEEEEcchhc
Confidence 1111 111 1122 33 45556654432 222233334433 46899999999997
Q ss_pred CCCCCHHHHHhhcCcCccCCCceEEEEeecc
Q 030113 131 KDAMTPAEITDALSLHSIKNHDWHIQACSAL 161 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 161 (183)
........+...+... ....+++++.+|..
T Consensus 189 Lt~~E~~~l~~~I~~~-L~~~gi~I~~is~~ 218 (427)
T 2qag_B 189 ISKSELTKFKIKITSE-LVSNGVQIYQFPTD 218 (427)
T ss_dssp SCHHHHHHHHHHHHHH-HBTTBCCCCCCC--
T ss_pred cchHHHHHHHHHHHHH-HHHcCCcEEecCCC
Confidence 6543333333333221 12345667777643
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=8.7e-12 Score=91.10 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC-----CcccccCcccceeEEEEE-cCeEEEEEEcCCChhhH--------hhHHhhc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG-----EVVTTHPTVGSNVEELVY-KNIRFEAWDVGGQERLR--------TSWATYY 82 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~--------~~~~~~~ 82 (183)
..+++++|.+|+|||||+|++.+. .....+...+++.....+ -...+.++||||-.... .....++
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 357999999999999999999876 222223333333222222 12347999999943211 1112222
Q ss_pred --cCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 83 --RGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
+..+.+++++++...--+..+.. +......+.|+++++||.|....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 67899999999843211111100 12222246899999999997643
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=1.9e-10 Score=83.98 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=68.3
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCc-
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHS- 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~- 147 (183)
.+++|...+..+.+.++++++|+|++++. ......+.... .+.|+++|+||+|+.+.. ...+..+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 46889999999999999999999998863 12222233332 368999999999986543 2233333221110
Q ss_pred -cCCCceEEEEeecccCCCHHHHHHHHHHhh
Q 030113 148 -IKNHDWHIQACSALTGDGLVDGLEWISQRV 177 (183)
Q Consensus 148 -~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~ 177 (183)
......+++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 011122699999999999999999997654
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.04 E-value=2.5e-09 Score=78.89 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=86.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCccccc--Ccccce----eEEEEEcC-eEEEEEEcCCChh----hHhhHH-hhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEVVTTH--PTVGSN----VEELVYKN-IRFEAWDVGGQER----LRTSWA-TYYR 83 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~~~~~--~~~~~~----~~~~~~~~-~~~~~~D~~g~~~----~~~~~~-~~~~ 83 (183)
....++++|++|+|||||+|.+.+-..+... ...+.. ........ ..+.++|++|-.. ...... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3458999999999999999999884322211 000100 01111111 3688999998432 111111 1233
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCC---------CCCCHHHHHhhcCcCc-----cC
Q 030113 84 GTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLK---------DAMTPAEITDALSLHS-----IK 149 (183)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~---------~~~~~~~~~~~~~~~~-----~~ 149 (183)
..+..++ ++...+.. .+..+...+.. .+.|+++|.||.|+. +.....++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~~~k---qrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCccH---HHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 77652221 12222222222 258999999999963 2223333333332211 00
Q ss_pred -CCceEEEEeec--ccCCCHHHHHHHHHHhhhccC
Q 030113 150 -NHDWHIQACSA--LTGDGLVDGLEWISQRVTGKA 181 (183)
Q Consensus 150 -~~~~~~~~~S~--~~~~gi~~~~~~i~~~~~~~~ 181 (183)
.....++.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 11235788899 566679999999998887654
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=3.6e-10 Score=82.58 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhcCcCc-
Q 030113 70 GQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAM-TPAEITDALSLHS- 147 (183)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~-~~~~~~~~~~~~~- 147 (183)
.+++|...+..+...++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+.. ....+.+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 478899999998899999999999998763 1112223332 368999999999986543 2333333322111
Q ss_pred -cCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 148 -IKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 148 -~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
......+++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1111236899999999999999999977553
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=8.9e-11 Score=85.74 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC------cccccCcccceeEEEEEc-CeEEEEEEcCCChhhH--------hhHHhh
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE------VVTTHPTVGSNVEELVYK-NIRFEAWDVGGQERLR--------TSWATY 81 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------~~~~~~ 81 (183)
..+++++|.+|+|||||+|++.+.. ....+...+++.....+. ...+.++||||-.... .....+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 3689999999999999999998752 222233333332222221 2238999999943211 111222
Q ss_pred --ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030113 82 --YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAE 138 (183)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~ 138 (183)
.+..+.+++++++....-+..+.. +......+.|+++++||.|.........
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHH
T ss_pred ccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHH
Confidence 356789999998842211111100 1122224689999999999865444333
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=7.1e-10 Score=77.66 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCccccc-------C-cccceeEEEEE------cCeEEEEEEcCCChh---------
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEVVTTH-------P-TVGSNVEELVY------KNIRFEAWDVGGQER--------- 73 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~~~~~-------~-~~~~~~~~~~~------~~~~~~~~D~~g~~~--------- 73 (183)
.++++++|++|+|||||++.+++...+... + ........+.+ -...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999874332211 0 00000111111 123778999997211
Q ss_pred -hHh--------hHHh----------hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCC
Q 030113 74 -LRT--------SWAT----------YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDA 133 (183)
Q Consensus 74 -~~~--------~~~~----------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~ 133 (183)
... .... .+..+++.++++|.... .++.....+...+.. . .++++|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 110 0011 12235888999996521 122222222222222 2 899999999997654
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.93 E-value=1.4e-09 Score=76.62 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=67.9
Q ss_pred EEcCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcC
Q 030113 66 WDVGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALS 144 (183)
Q Consensus 66 ~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~ 144 (183)
-..||+. +....+...++.+|+++.|+|+.++.+... ..+..++ .++|.++|.||+|+.+....+...+.+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~ 76 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE 76 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 3568865 567778888999999999999998866432 1222332 3689999999999975322112222221
Q ss_pred cCccCCCceEEEEeecccCCCHHHHHHHHHHhhh
Q 030113 145 LHSIKNHDWHIQACSALTGDGLVDGLEWISQRVT 178 (183)
Q Consensus 145 ~~~~~~~~~~~~~~S~~~~~gi~~~~~~i~~~~~ 178 (183)
..+.+++.+||+++.|++++++.+.+.+.
T Consensus 77 -----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 -----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 12346999999999999999998877664
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=1.8e-09 Score=76.10 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeE--EEEEcCeEEEEEEcCCC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVE--ELVYKNIRFEAWDVGGQ 71 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~ 71 (183)
....++++++|.+|+|||||+|++.+..........+++.. .+.. +..+.++||||-
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~ 175 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGI 175 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCc
Confidence 35678999999999999999999998775544444333321 1222 347899999994
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.86 E-value=6.1e-10 Score=77.64 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEE-EcCeEEEEEEcCCCh
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELV-YKNIRFEAWDVGGQE 72 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~ 72 (183)
++++++|.+|+|||||+|++.+.......++.+++..... .-+..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence 6999999999999999999998776555544443322111 124578999999954
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.68 E-value=4e-08 Score=75.56 Aligned_cols=59 Identities=20% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcc-cc-c----CcccceeEEEE---EcCeEEEEEEcCCCh
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVV-TT-H----PTVGSNVEELV---YKNIRFEAWDVGGQE 72 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~-~~-~----~~~~~~~~~~~---~~~~~~~~~D~~g~~ 72 (183)
..+..+|+|+|.+|+|||||+|++.+.... .. . .|.+...+... ..+..+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 467789999999999999999999987632 21 1 22222222111 146789999999954
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.64 E-value=7.4e-08 Score=74.78 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
..++|+|++|+|||||++.+.|-..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC
Confidence 35999999999999999999886533
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.59 E-value=7.2e-08 Score=71.75 Aligned_cols=109 Identities=23% Similarity=0.187 Sum_probs=62.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC------cc----ccc------------------------Cccc---ceeEEE-E
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE------VV----TTH------------------------PTVG---SNVEEL-V 57 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~------~~----~~~------------------------~~~~---~~~~~~-~ 57 (183)
+...|+++|++|+||||+++.+.... .. ... .+.. .....+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 34679999999999999999886421 00 000 0000 000000 0
Q ss_pred EcCeEEEEEEcCCChhhHhh----HHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCC-e-EEEEEeCCC
Q 030113 58 YKNIRFEAWDVGGQERLRTS----WATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHS-V-VLIFANKQD 129 (183)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-vilv~nK~D 129 (183)
.....+.++||||....... .... +..+|.+++|+|+..... .......+. ... | ..+|+||+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----EAVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----TTSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----hcccCCeEEEEeCCC
Confidence 14578999999996543211 1111 236899999999976542 222222221 123 4 789999999
Q ss_pred CCC
Q 030113 130 LKD 132 (183)
Q Consensus 130 l~~ 132 (183)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 854
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.49 E-value=2.5e-07 Score=68.78 Aligned_cols=110 Identities=24% Similarity=0.175 Sum_probs=63.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------CCcc----ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------GEVV----TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------~~~~----~~~------------~~~~~~~~~~----------------- 56 (183)
+...|+++|++|+||||++.+++. .... ... ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467889999999999999988862 2110 000 0111111110
Q ss_pred EEcCeEEEEEEcCCChhhH----hhHH--hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCC
Q 030113 57 VYKNIRFEAWDVGGQERLR----TSWA--TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDL 130 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl 130 (183)
...+..+.++||+|..... .... .....+|.+++|+|++....-......+... -.+..+|.||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~-------~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA-------TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHS-------CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhh-------CCCeEEEEECCCC
Confidence 0024789999999943211 1111 1134579999999998764433333333322 1345789999998
Q ss_pred CC
Q 030113 131 KD 132 (183)
Q Consensus 131 ~~ 132 (183)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=1.2e-07 Score=66.08 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=59.5
Q ss_pred cCCCh-hhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcC
Q 030113 68 VGGQE-RLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLH 146 (183)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~ 146 (183)
.|||. +....+...+.++|+++.|+|+.++.+.... .+. . . ++|.++|.||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 36654 3456677788999999999999988543221 011 1 1 6899999999999754222222222211
Q ss_pred ccCCCceEEEEeecccCCCHHHHHHHHHH
Q 030113 147 SIKNHDWHIQACSALTGDGLVDGLEWISQ 175 (183)
Q Consensus 147 ~~~~~~~~~~~~S~~~~~gi~~~~~~i~~ 175 (183)
.+.++ .+|++++.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 23457 9999999999999887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=2.3e-06 Score=63.54 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=64.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc------CCcc----ccc------------CcccceeEEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL------GEVV----TTH------------PTVGSNVEEL----------------- 56 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~------~~~~----~~~------------~~~~~~~~~~----------------- 56 (183)
+...|+++|++|+||||++..++. .... ... ...+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356788999999999999988852 1110 000 0111111100
Q ss_pred EEcCeEEEEEEcCCChh------hHhhHHhh--ccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCC
Q 030113 57 VYKNIRFEAWDVGGQER------LRTSWATY--YRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQ 128 (183)
Q Consensus 57 ~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~ 128 (183)
......+.++||||... ........ ....+.+++|+|+............+.... .+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-------~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-------PIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-------SSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-------CCcEEEEecc
Confidence 01256889999999543 11111111 225699999999987654434444444332 3468899999
Q ss_pred CCCC
Q 030113 129 DLKD 132 (183)
Q Consensus 129 Dl~~ 132 (183)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9753
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.26 E-value=1.1e-06 Score=62.26 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=40.2
Q ss_pred cCeEEEEEEcCCChh--hHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCCC
Q 030113 59 KNIRFEAWDVGGQER--LRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQD 129 (183)
Q Consensus 59 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~D 129 (183)
....+.++||||... ... .+. .....+|.+++|+|+....... .....+.. ..+ ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---DLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---HHHHHHHh-----hCCCCEEEEeCCC
Confidence 456899999999766 322 111 1245789999999987543222 22222211 134 678899999
Q ss_pred CCC
Q 030113 130 LKD 132 (183)
Q Consensus 130 l~~ 132 (183)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.18 E-value=7.2e-07 Score=63.40 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=55.5
Q ss_pred hhccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhcCcCccCCCceE
Q 030113 80 TYYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMT----PAEITDALSLHSIKNHDWH 154 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~ 154 (183)
..+.++|.+++|+|+.+|.. ...+...+..... .++|.++|+||+|+.+... ...+.+.+. ..+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCe
Confidence 46889999999999987653 3333333333222 4688999999999976532 122222221 12346
Q ss_pred EEEeecccCCCHHHHHHH
Q 030113 155 IQACSALTGDGLVDGLEW 172 (183)
Q Consensus 155 ~~~~S~~~~~gi~~~~~~ 172 (183)
++.+|+.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998877654
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=4.7e-06 Score=59.87 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=60.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCCccc----------c------------cCcccceeEEEE---------------
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGEVVT----------T------------HPTVGSNVEELV--------------- 57 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~~~~----------~------------~~~~~~~~~~~~--------------- 57 (183)
.+.-.++++|++|+||||+++.+++...+. . ....++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456788999999999999999886421110 0 001111111000
Q ss_pred --EcCeEEEEEEcCCChhhHh----hHHh--hccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCC
Q 030113 58 --YKNIRFEAWDVGGQERLRT----SWAT--YYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQD 129 (183)
Q Consensus 58 --~~~~~~~~~D~~g~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~D 129 (183)
.....+.++|++|...... .... -.-..|-.+++.|+............+.... ....+++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~-------~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV-------KIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS-------CCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc-------CCCEEEEeCcC
Confidence 0234677899999543221 1111 1124789999999876543333323332221 12378899999
Q ss_pred CC
Q 030113 130 LK 131 (183)
Q Consensus 130 l~ 131 (183)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 64
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.07 E-value=8.1e-06 Score=60.83 Aligned_cols=110 Identities=18% Similarity=0.148 Sum_probs=62.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc-------cCCcc----ccc-C-----------cccceeEE-----------------
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH-------LGEVV----TTH-P-----------TVGSNVEE----------------- 55 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~-------~~~~~----~~~-~-----------~~~~~~~~----------------- 55 (183)
+...|+++|.+|+||||++..|+ +.... ... + ..++....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678889999999999988885 32211 000 0 00111100
Q ss_pred EEEcCeEEEEEEcCCChhhHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCe-EEEEEeCC
Q 030113 56 LVYKNIRFEAWDVGGQERLRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSV-VLIFANKQ 128 (183)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-vilv~nK~ 128 (183)
....+..+.++||||...... ... ..+..++.+++|+|+............+..- .+ .-+|.||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~--------l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA--------LPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHH--------SCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhcc--------CCCeEEEEecC
Confidence 011357899999999644321 111 1234689999999998654332222222221 22 34789999
Q ss_pred CCCCC
Q 030113 129 DLKDA 133 (183)
Q Consensus 129 Dl~~~ 133 (183)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.07 E-value=6.2e-06 Score=61.51 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+..-|+|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 45678899999999999999999985
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.06 E-value=2.9e-07 Score=69.47 Aligned_cols=85 Identities=24% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccCCcccccCcccceeEEEEE----cCeEEEEEEcCCChh--hHhhH--------H
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVY----KNIRFEAWDVGGQER--LRTSW--------A 79 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~--------~ 79 (183)
......|+++|.+|+||||+.++|.........++..+....+.. ......+||..|++. ....+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999754221111221111000000 113446788888732 23333 5
Q ss_pred hhccCCCEEEEEEeCCCcc
Q 030113 80 TYYRGTHAVIVVIDSTDRA 98 (183)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~ 98 (183)
.++...++.++|+|.++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 5666778999999999873
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.93 E-value=1.7e-05 Score=57.49 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=53.0
Q ss_pred hccCCCEEEEEEeCCCccc-HHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhcCcCccCCCceEEEEee
Q 030113 81 YYRGTHAVIVVIDSTDRAR-ISIMKDELFRLLGHEDLQHSVVLIFANKQDLKDAMTPAEITDALSLHSIKNHDWHIQACS 159 (183)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (183)
...++|.+++|... .|.. ...+..++..... .++|.++|+||+|+.+......+.+.... ....+++++.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence 46889999988665 4543 3333333332211 35788999999999764321112222221 123355699999
Q ss_pred cccCCCHHHHHHHH
Q 030113 160 ALTGDGLVDGLEWI 173 (183)
Q Consensus 160 ~~~~~gi~~~~~~i 173 (183)
+.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999987653
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.86 E-value=7.4e-06 Score=53.67 Aligned_cols=22 Identities=45% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.84 E-value=7e-05 Score=53.04 Aligned_cols=23 Identities=48% Similarity=0.576 Sum_probs=19.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+.-.++++|++|+||||++..++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578899999999999998875
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.71 E-value=2.5e-05 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.-.++++|++|+||||+++.+++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34456899999999999999999775
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.70 E-value=1.6e-05 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999975
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.2e-05 Score=51.45 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++|+|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999764
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.69 E-value=2.2e-05 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...++|+|++|+|||||++.+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988654
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=5.3e-06 Score=58.96 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.-.++++|++|+|||||+|.+.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 35789999999999999999987643
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.64 E-value=2.9e-05 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...+...+.-.++++|++|+|||||++.+++.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 334444344567899999999999999988654
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.64 E-value=2.2e-05 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.--++|+|++|+|||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999764
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.64 E-value=2.7e-05 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++-..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3578999999999999999987543
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=2.3e-05 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45789999999999999999764
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=0.00019 Score=53.33 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCChhhHh-hHH-----hhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQERLRT-SWA-----TYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++||||...... ... .....++.+++|+|+............+...+ ...-+|.||.|...
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l-------~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-------GVTGLVLTKLDGDA 251 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHT-------CCCEEEEESGGGCS
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcC-------CceEEEEeCcCCcc
Confidence 56799999998543211 111 11236899999999875432222222222211 12467889999653
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.62 E-value=2.5e-05 Score=51.48 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999754
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.62 E-value=2.8e-05 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
--++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 356899999999999999654
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.59 E-value=3.4e-05 Score=52.43 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|+.|+|||||++.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.59 E-value=2.9e-05 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-.++|+|++|+|||||++.+.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999764
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.59 E-value=3.7e-05 Score=51.54 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|+.|+|||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999998866
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=3e-05 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
--++|+|++|+|||||++.+.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999997643
No 255
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.58 E-value=4.7e-05 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.100 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 56678999999999999999998754
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.57 E-value=3.5e-05 Score=49.41 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.-.++++|+.|+|||||++.+++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468899999999999999998754
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.54 E-value=4.9e-05 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+.-.|+|+|++||||||+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.54 E-value=4.3e-05 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|+.|+|||||++.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998754
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=5.4e-05 Score=50.27 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.+.-.|+|+|++|+|||||+++|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 345556889999999999999999754
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.54 E-value=4.5e-05 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.53 E-value=4.7e-05 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.53 E-value=4.5e-05 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998754
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.53 E-value=5.2e-05 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999998764
No 264
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.52 E-value=8.4e-05 Score=53.17 Aligned_cols=32 Identities=34% Similarity=0.235 Sum_probs=24.9
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
|.........+-|+|+|++|||||||++.+.+
T Consensus 83 ~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 83 FLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33333455678899999999999999988854
No 265
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.52 E-value=0.00082 Score=44.60 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=45.8
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCC-CCCCeEEEEEeCCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHED-LQHSVVLIFANKQDLK 131 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~vilv~nK~Dl~ 131 (183)
...+.++|+|+... ......+..+|.+++++..+... ......+..+..... ..+.++.+|.|+.|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 46899999997652 33445567799999999987543 445444444433221 2456789999999854
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.51 E-value=5.1e-05 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998754
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.51 E-value=5.1e-05 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998754
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.51 E-value=5.9e-05 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.50 E-value=5.4e-05 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.|+|+|++|+||||+++.+.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998864
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.50 E-value=6.1e-05 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.50 E-value=6.3e-05 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+..-|+++|++|+||||+++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568899999999999999997653
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.49 E-value=5.7e-05 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 273
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.49 E-value=5.6e-05 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 357899999999999999998754
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.49 E-value=4.8e-05 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+++|++||||||+++.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998653
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.49 E-value=9.3e-05 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998753
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.48 E-value=8.3e-05 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4689999999999999999988654
No 277
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.48 E-value=6e-05 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.47 E-value=7e-05 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|+.|+|||||++.+++-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998764
No 279
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.46 E-value=7.2e-05 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 367899999999999999998753
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.46 E-value=7.2e-05 Score=52.53 Aligned_cols=24 Identities=50% Similarity=0.522 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.45 E-value=6.5e-05 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|+.|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.45 E-value=7.3e-05 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
...++++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999997653
No 283
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=5e-05 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998764
No 284
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.45 E-value=7.7e-05 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.44 E-value=5.2e-05 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++++|+.|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999876
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.44 E-value=6.2e-05 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999975
No 287
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.43 E-value=0.00011 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999988654
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.43 E-value=0.0001 Score=47.89 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|++|+||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998854
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.43 E-value=7.5e-05 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.43 E-value=8e-05 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
=.++|+|+.|+|||||++.+++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999885
No 291
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.42 E-value=8.6e-05 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|+.|+|||||++.+++-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987643
No 292
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.41 E-value=9.8e-05 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
-.++++|++|+|||||++.+.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 46789999999999999999876543
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=8.8e-05 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.40 E-value=7.5e-05 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.=.++|+|++|+|||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3445689999999999999998875
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.40 E-value=7.3e-05 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.=.++|+|++|+||||+++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34456899999999999999998763
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.40 E-value=9.7e-05 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++|+|+.|+|||||++.+++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998865
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.39 E-value=9.7e-05 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+...++|+|++|+|||||++.+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456678999999999999999998763
No 298
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.39 E-value=0.0022 Score=45.47 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCChhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEE-EEEeCCCC
Q 030113 60 NIRFEAWDVGGQERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVL-IFANKQDL 130 (183)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vi-lv~nK~Dl 130 (183)
...+.++|+|+...... ....+..+|.+++|...+. .++......+..+.......+.+++ +|.|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999987543221 2345678999999997653 4455555555555443333456655 89999984
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.38 E-value=0.00013 Score=48.49 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.....|++.|++|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999998854
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=0.00011 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHh
Q 030113 18 YKIIIVGLDNAGKTTTLYKL 37 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l 37 (183)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
No 301
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.38 E-value=0.00011 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557799999999999999998865
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.38 E-value=9.3e-05 Score=48.72 Aligned_cols=21 Identities=43% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998643
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.37 E-value=9e-05 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998653
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.37 E-value=0.00011 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
++...|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988853
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.37 E-value=9.3e-05 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+|+|+|++||||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999876
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.37 E-value=0.00011 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=21.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+...|+++|++|+||||+++.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45677899999999999999988653
No 307
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.36 E-value=0.00012 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4588999999999999999976
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=0.00011 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.190 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++||||||+++.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.35 E-value=0.00012 Score=48.80 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 310
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.35 E-value=0.00014 Score=48.40 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+...|+|+|++|+||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999998864
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.35 E-value=9.4e-05 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|+|++|+||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998854
No 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.34 E-value=0.00012 Score=47.89 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 313
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.34 E-value=0.0001 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 468999999999999999987543
No 314
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.00021 Score=46.62 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred HhhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 8 FWFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...........+++.|++|+|||++++.+...
T Consensus 34 l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 34 TIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 334444455567899999999999999988653
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.33 E-value=0.00013 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+++-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998754
No 316
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.00012 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.|+++|++||||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998863
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.32 E-value=0.00016 Score=48.27 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...|+|+|++|+||||+++.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999764
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.32 E-value=0.00015 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 319
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.31 E-value=0.0002 Score=51.00 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|++|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998876
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00017 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+|+||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998854
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.30 E-value=0.00011 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||++.+++
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999976
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.30 E-value=0.00015 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998843
No 323
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.29 E-value=0.00013 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 468999999999999999987543
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.29 E-value=7.1e-05 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=15.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhc-cC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLH-LG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~-~~ 40 (183)
.-.++|+|++|+||||+++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468899999999999999998 54
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.28 E-value=8.7e-05 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|++|+|||||++.+++-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 468999999999999999997643
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.28 E-value=0.00016 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.28 E-value=0.00013 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHhccCC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998754
No 328
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.27 E-value=0.00019 Score=50.72 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=22.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+...|+|.|++|||||||++.+.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999988754
No 329
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00014 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|++.|++|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999865
No 330
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.27 E-value=0.00019 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 54
No 331
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.27 E-value=0.00014 Score=49.93 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~ 38 (183)
=-++++|++|+|||||++.++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 456899999999999999886
No 332
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00017 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998854
No 333
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00014 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|||||||++.+++-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3568999999999999999987543
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.26 E-value=0.00016 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.26 E-value=0.00014 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+.+-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 468999999999999999987543
No 336
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.25 E-value=0.00015 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|++|+|||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 356899999999999999998754
No 337
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.00013 Score=51.10 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999764
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.25 E-value=0.00024 Score=47.20 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.+...|++.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999988853
No 339
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.25 E-value=0.00022 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+...|+++|.+|+||||+++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567889999999999999998854
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00019 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988853
No 341
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.24 E-value=0.00015 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 468999999999999999987643
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.24 E-value=0.00022 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+..+|++.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998853
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.24 E-value=0.00017 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 344
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.24 E-value=0.00015 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+++-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 356899999999999999998754
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.23 E-value=6.6e-05 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999754
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.23 E-value=0.00011 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-+++|+|++|+|||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997753
No 347
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.00011 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..-.++++|++|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999764
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.23 E-value=0.00015 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++++|++|+|||||++++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46789999999999999999764
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.22 E-value=0.00019 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+...|++.|++||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999885
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00024 Score=47.43 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.21 E-value=0.00025 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+...|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 352
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.21 E-value=0.0002 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+++|+|||||+|...+|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998854
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00023 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998853
No 354
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0058 Score=45.60 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+--...--|++.||||+|||+|++++++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 33445567899999999999999999754
No 355
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00025 Score=46.11 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=24.1
Q ss_pred hhhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 9 WFMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 9 ~~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...........+++.|++|+|||++++.+...
T Consensus 35 ~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 35 IQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33334455567899999999999999888643
No 356
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.18 E-value=0.00016 Score=52.48 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|+|++|+||||+++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999998653
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.18 E-value=0.00021 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++|+|++|+|||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.17 E-value=0.00023 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.380 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 359
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00018 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.16 E-value=0.00025 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
+...|++.|++|+||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44578899999999999999886
No 361
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.16 E-value=0.0002 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998853
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.16 E-value=0.00029 Score=46.79 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|++.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.15 E-value=0.00029 Score=49.66 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|++.|++|+||||+++++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999864
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00027 Score=50.21 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999998863
No 365
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|||||||++.+++-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 357899999999999999998743
No 366
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.15 E-value=0.00012 Score=52.90 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++++|++|||||||++.+++-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 568999999999999999987543
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.14 E-value=0.00029 Score=47.14 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.0002 Score=46.48 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 369
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.13 E-value=0.00033 Score=47.67 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+..-|+|.|+.|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578899999999999999999764
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.13 E-value=0.00026 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+.++|++|+|||||+.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999865
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00024 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998853
No 372
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.00019 Score=46.81 Aligned_cols=24 Identities=38% Similarity=0.289 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998853
No 373
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.11 E-value=0.00024 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.-.++|+|++|+|||||++.+.+-.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3478899999999999999997753
No 374
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.10 E-value=0.00031 Score=46.94 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|++.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 375
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.09 E-value=0.00028 Score=49.90 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=21.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...-+++.|+||+|||+|++.++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44456778899999999999998653
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00034 Score=49.69 Aligned_cols=24 Identities=50% Similarity=0.623 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||+++.+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999998864
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.09 E-value=0.00024 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|+|++|||||||...|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998854
No 378
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.08 E-value=0.00036 Score=47.58 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998853
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.08 E-value=0.00026 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.-.++|+|++|+||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999763
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.07 E-value=0.00033 Score=47.76 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+.+.|+|.|++|+||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 381
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.07 E-value=0.00025 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.++++|++|+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999764
No 382
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00049 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998853
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.06 E-value=0.00013 Score=53.01 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++++|++|||||||++.+++-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3568999999999999999987543
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.05 E-value=0.00032 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988854
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.05 E-value=0.00038 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+...|+++|.+|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999998865
No 386
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.04 E-value=0.00028 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++++|++|+|||||++.+++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999764
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.00038 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.04 E-value=0.00036 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.03 E-value=0.00047 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
.+...|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.03 E-value=0.00048 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--|+|+|+|||||+|...+|+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999988854
No 391
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00028 Score=48.79 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.....|+++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457889999999999999998754
No 392
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.02 E-value=0.00046 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988854
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.01 E-value=0.0003 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+.=.++|+|++|+||||+++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 33346889999999999999998763
No 394
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=0.00073 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.3
Q ss_pred hcCCCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 11 MLFPGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+....+|+++|++|+||||+...+++
T Consensus 18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 18 RIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34455667899999999999999987754
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.01 E-value=0.00037 Score=53.12 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
-.++|+|++||||||+++.+++--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999997643
No 396
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.00 E-value=0.00057 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.00 E-value=0.00052 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.99 E-value=0.00048 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.98 E-value=0.00047 Score=45.31 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.98 E-value=0.00048 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999864
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00033 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
..-.++|+|+.|+|||||++.+++-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44578999999999999999987643
No 402
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.97 E-value=0.0009 Score=46.62 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 566778999999999999999998653
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00037 Score=47.12 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++++|++|+|||||+..+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999998864
No 404
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.00052 Score=49.88 Aligned_cols=24 Identities=50% Similarity=0.623 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||+++.+++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999998864
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.95 E-value=0.00046 Score=45.10 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988853
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.95 E-value=0.00047 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998854
No 407
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.00046 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988854
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00039 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345899999999999999999653
No 409
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00071 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.....+++.|++|+|||++++.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44556899999999999999999654
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.92 E-value=0.00057 Score=51.61 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.++|+|++|+|||||++.|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456789999999999999998864
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.91 E-value=0.00058 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998853
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.90 E-value=0.00047 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
+.-+++++|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998764
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.90 E-value=0.0007 Score=46.07 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|++.|++|+||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567889999999999999998864
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.90 E-value=0.001 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+++.|++|+|||+|+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999988653
No 415
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.90 E-value=0.00065 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.+++.|+||+|||+++.+++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999887754
No 416
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.89 E-value=0.00019 Score=48.06 Aligned_cols=21 Identities=48% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.88 E-value=0.00046 Score=48.75 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||+..+++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3568999999999999988864
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.88 E-value=0.00076 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.=.++++|+.|+|||||++.+.+-..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34679999999999999999987543
No 419
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.85 E-value=0.00076 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+++|.+|+||||+++.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456788999999999999998854
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00094 Score=51.23 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=26.0
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
....+.+.=.++++|+.|+|||||++.+++-..
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334455566789999999999999999987543
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00047 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.|+++|++|+||||+.+.+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998854
No 422
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.0006 Score=43.17 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3699999999999999874
No 423
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.83 E-value=0.00083 Score=44.43 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.+.|++.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999998854
No 424
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.00079 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+++.|++|+||||+++.+++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999998866
No 425
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.82 E-value=0.00067 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 468999999999999999997754
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.81 E-value=0.00079 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 427
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.81 E-value=0.00061 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++++|++|+|||||+..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
No 428
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.80 E-value=0.001 Score=47.17 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34456899999999999999999754
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.80 E-value=0.00056 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
-.++|+|++|+|||||++.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999998865
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.79 E-value=0.00064 Score=50.80 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.+.=+++|+|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345678999999999999999998754
No 431
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.00066 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
--++|+|++|+|||||+..++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999999998763
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00093 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++++|+.|+|||||++.+.+-..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 344689999999999999999987543
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.76 E-value=0.00065 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=21.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445788999999999999999975
No 434
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.76 E-value=0.0011 Score=51.61 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
+.=.++++|+.|+|||||++.+.+...
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 334679999999999999999987543
No 435
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0012 Score=49.25 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345567999999999999999999754
No 436
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.75 E-value=0.00076 Score=42.30 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....|++.|++|+|||++++.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3456899999999999999999654
No 437
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.75 E-value=0.0009 Score=42.05 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.....|++.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34466899999999999999998654
No 438
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.74 E-value=0.015 Score=38.77 Aligned_cols=67 Identities=7% Similarity=-0.013 Sum_probs=44.3
Q ss_pred CeEEEEEEcCCC-hhhHhhHHhhccCCCEEEEEEeCCCcccHHHHHHHHHHHhCCCCCCCCeEEEEEeCCCCCC
Q 030113 60 NIRFEAWDVGGQ-ERLRTSWATYYRGTHAVIVVIDSTDRARISIMKDELFRLLGHEDLQHSVVLIFANKQDLKD 132 (183)
Q Consensus 60 ~~~~~~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~vilv~nK~Dl~~ 132 (183)
...+.++|+|+. ... .....+..+|.+++++..+. .++......+..+.... +.++.+|.|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 468899999986 432 23455678999999998753 34444444444443211 456889999998654
No 439
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.73 E-value=0.00069 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 478999999999999999997654
No 440
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.72 E-value=0.0007 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||++++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467899999999999999999753
No 441
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.72 E-value=0.0011 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997754
No 442
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.72 E-value=0.0008 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-++|+|+.|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35678899999999999999865
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.71 E-value=0.00092 Score=46.38 Aligned_cols=28 Identities=32% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..++...|+|.|..|+||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3345678999999999999999988654
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.70 E-value=0.0007 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 468999999999999999997754
No 445
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.70 E-value=0.00053 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+.+.|+|.|+.||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999988753
No 446
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.70 E-value=0.001 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.+...|+|+|++|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998864
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0013 Score=50.49 Aligned_cols=25 Identities=40% Similarity=0.224 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCCc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
=.++|+|+.|+|||||++.+++-..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999999987643
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.0014 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++|+|+.|+|||||++.+++-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 449
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.69 E-value=0.0048 Score=46.10 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..+..-|.|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4567788899999999999999553
No 450
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.68 E-value=0.0008 Score=52.36 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccCC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
.=.++++|++|+|||||++.+.+-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3578999999999999999997754
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.00093 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.+++.|++|+||||+++.+++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.67 E-value=0.0011 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhcc
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999987654
No 453
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.002 Score=45.88 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999988864
No 454
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0015 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...--+++.||||+|||+|++++++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999999753
No 455
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.66 E-value=0.0012 Score=45.58 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999865
No 456
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0015 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..+++.|++|+|||++++.+...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999988654
No 457
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.66 E-value=0.00093 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++++|++|+|||||++.+.+-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999997644
No 458
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.65 E-value=0.00097 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+++|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.65 E-value=0.0015 Score=50.94 Aligned_cols=24 Identities=42% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEV 42 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~ 42 (183)
.++|+|+.|+|||||++.+.+-..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999988543
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.62 E-value=0.0013 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
-..+++++|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999988853
No 461
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.61 E-value=0.00099 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
--++|+|++|+|||||+..+++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999988864
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.60 E-value=0.001 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998864
No 463
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.60 E-value=0.00097 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-.+++.|++|+|||+|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999998653
No 464
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.57 E-value=0.0016 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988864
No 465
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0014 Score=48.23 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344566899999999999999999754
No 466
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.00076 Score=48.19 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.9
Q ss_pred hhcCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 10 FMLFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
........-.++|.|+||+|||++++.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344567788999999999999999988653
No 467
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.56 E-value=0.0014 Score=49.53 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 12 LFPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+.....-.++++|++|+|||++++.++..
T Consensus 196 l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33345567899999999999999988643
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.56 E-value=0.0014 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998754
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.55 E-value=0.0012 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHhc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~ 38 (183)
..+ .+|+|+.|+|||||+++++
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 345 4599999999999999886
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.52 E-value=0.002 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-|+++|.+||||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4466888999999999999998653
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0013 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHhccCCcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLGEVV 43 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~~~~ 43 (183)
.++|+|+.|+|||||++.+.+-..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3789999999999999999876543
No 472
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.51 E-value=0.0017 Score=43.18 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.50 E-value=0.0021 Score=46.15 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
..|+|+|++|+|||||...|+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988654
No 474
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.47 E-value=0.002 Score=45.76 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+.-.++++|++|+||||++..+++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345688999999999999988853
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.0014 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988653
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.0013 Score=47.05 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457899999999999999999754
No 477
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.002 Score=46.94 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44457899999999999999988653
No 478
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.45 E-value=0.002 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999988653
No 479
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.44 E-value=0.0015 Score=44.32 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=17.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHhcc
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~ 39 (183)
+..-|++.|++|+||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999998854
No 480
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0014 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457889999999999999998753
No 481
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.42 E-value=0.002 Score=42.04 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhccC
Q 030113 20 IIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~~~ 40 (183)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999754
No 482
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0017 Score=44.30 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHhc
Q 030113 19 KIIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~ 38 (183)
-++|+|++|+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999977664
No 483
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.41 E-value=0.0017 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 484
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0027 Score=47.13 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 14 PGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 14 ~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
-...--|++.||||+|||+|++++++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 345567999999999999999999754
No 485
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.41 E-value=0.0015 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.--+.|+|++|+|||||++.++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999998764
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.41 E-value=0.002 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
....+++.|++|+|||+++++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999653
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.40 E-value=0.0018 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4688999999999999988854
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0014 Score=47.81 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 15 GKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 15 ~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...-.++|.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44567889999999999999988653
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.36 E-value=0.0028 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
..-|+|+|++|||||||...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34578899999999999998864
No 490
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.36 E-value=0.0025 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHhccC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~ 40 (183)
.-|+|+|++|||||||...++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45789999999999999988643
No 491
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0025 Score=47.73 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=23.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHhccC
Q 030113 13 FPGKDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 13 ~~~~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
--...--|++.|+||+|||+|++++++.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3355667899999999999999999754
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0027 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
...|++.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35688999999999999998864
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.30 E-value=0.0024 Score=42.59 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHhc
Q 030113 20 IIIVGLDNAGKTTTLYKLH 38 (183)
Q Consensus 20 i~viG~~~~GKStl~~~l~ 38 (183)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999873
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.001 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhcc
Q 030113 19 KIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~ 39 (183)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999865
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.30 E-value=0.0018 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHhccC
Q 030113 19 KIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 19 ~i~viG~~~~GKStl~~~l~~~ 40 (183)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.30 E-value=0.0022 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHhccCC
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHLGE 41 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~~~ 41 (183)
=.++|+|+.|+|||||++.+.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999998643
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0031 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHhcc
Q 030113 18 YKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 18 ~~i~viG~~~~GKStl~~~l~~ 39 (183)
..+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 498
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.25 E-value=0.002 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHhcc
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHL 39 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~ 39 (183)
.-.+++.|++|+|||||++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999865
No 499
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.25 E-value=0.002 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHhccC
Q 030113 16 KDYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 16 ~~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
+...++++|++|+|||||++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457899999999999999988653
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.24 E-value=0.0021 Score=46.66 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHhccC
Q 030113 17 DYKIIIVGLDNAGKTTTLYKLHLG 40 (183)
Q Consensus 17 ~~~i~viG~~~~GKStl~~~l~~~ 40 (183)
...|++.|++|+|||+|++.++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998653
Done!