BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030114
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D +Q +L+ +P+L+D+ A+WC C + P LE +AAE+ K++ +++++
Sbjct: 13 DSFEQDVLKND---KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT 69
Query: 144 LVKRGNISI-----WKDGEMKSEVIGGHKAWLVIEEVREMI 179
K G +SI ++ GE+ ++G ++ ++ + I
Sbjct: 70 AAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140
++ D D + +A+E + ++ID+ ASWC C ++ P + A +F + F VDV+++
Sbjct: 20 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDEL 78
Query: 141 SKDLVKRGNIS------IWKDGEMKSEVIGGHK 167
K++ ++ N+ KDG +V+G K
Sbjct: 79 -KEVAEKYNVEAMPTFLFIKDGAEADKVVGARK 110
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136
L ++DSD L ++ PI+I + SWC+ C +KP E++A++ + ++F Y+D
Sbjct: 1 LRSLSDSD----FQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMD 56
Query: 137 VNKVSKDLVKRG-----NISIWKDGEMKSEVIGG 165
K + + +++++ DG M EV G
Sbjct: 57 AEDAEKTMAELNIRTLPSLALFVDG-MIREVFSG 89
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC C + P +EK A ++ + FY +DV++VS D+ ++ +S +
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 79
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ + V+G + A +
Sbjct: 80 KGGKEVTRVVGANPAAI 96
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC C + P +EK A ++ + FY +DV++VS D+ ++ +S +
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 86
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ + V+G + A +
Sbjct: 87 KGGKEVTRVVGANPAAI 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD-----LVKRGNIS 151
++P+L+D+ A+WC C + P LE++A E T L +DV+ + +V +
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 84
Query: 152 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182
++KDG+ ++G ++ E+ +++
Sbjct: 85 LFKDGQPVKRIVGAKGKAALLRELSDVVPNL 115
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD-----LVKRGNIS 151
++P+L+D+ A+WC C + P LE++A E T L +DV+ + +V +
Sbjct: 30 NKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 89
Query: 152 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182
++KDG+ ++G ++ E+ +++
Sbjct: 90 LFKDGQPVKRIVGAKGKAALLRELSDVVPNL 120
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
E++ +NDS + +L E P+++D+ A WC C + P +++LA E+ K+ Y +
Sbjct: 1 EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKL 56
Query: 136 DVNKVSKDLVKRGNIS------IWKDGEMKSEVIGG 165
+ ++ + + + NI +K+GE K +IG
Sbjct: 57 NTDE-APGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISIW 153
+P ++D+ A WC C + P LE+L+ E+ K+ Y V+V+K +++D +G +IW
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIW 110
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV 145
D + ++ + ++ID+ ASWC C + P + A +F + F VDV+++ KD+
Sbjct: 17 FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDEL-KDVA 74
Query: 146 KRGNIS------IWKDGEMKSEVIGGHK 167
+ N+ KDGE V+GG K
Sbjct: 75 EAYNVEAMPTFLFIKDGEKVDSVVGGRK 102
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
+NDS + +L E P+++D+ A WC C + P +++LA E+ K+ Y ++ ++
Sbjct: 4 VNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 59
Query: 140 VSKDLVKRGNIS------IWKDGEMKSEVIGG 165
+ + + NI +K+GE K +IG
Sbjct: 60 -APGIATQYNIRSIPTVLFFKNGERKESIIGA 90
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC C + P +EK + ++ + FY +DV+++ D+ ++ +S ++
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 78
Query: 154 KDGEMKSEVIGGHKAWL 170
K+G+ ++V+G + A +
Sbjct: 79 KNGKEVAKVVGANPAAI 95
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 47/77 (61%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC C + P +EK + ++ + FY +DV+++ D+ ++ +S ++
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 84
Query: 154 KDGEMKSEVIGGHKAWL 170
K+G+ ++V+G + A +
Sbjct: 85 KNGKEVAKVVGANPAAI 101
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WK 154
+L D+ A WC C + P LE+L E KLK +DV++ + K G +SI K
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 155 DGEMKSEVIG 164
DGE+ +G
Sbjct: 80 DGEVVETSVG 89
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WKD 155
L+D+ A+WC C + P LE+LAA+++ K +DV++ K +SI +KD
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 156 GEMKSEVIG 164
G+ +V+G
Sbjct: 83 GQPVDKVVG 91
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WKD 155
L+D+ A+WC C + P LE+LAA+++ K +DV++ K +SI +KD
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 156 GEMKSEVIG 164
G+ +V+G
Sbjct: 84 GQPVDKVVG 92
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC + P +EK A ++ + FY +DV++VS D+ ++ +S +
Sbjct: 22 VVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 79
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ + V+G + A +
Sbjct: 80 KGGKEVTRVVGANPAAI 96
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WKD 155
L+D+ A+WC C + P LE+LAA+++ K +DV++ K +SI +KD
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 156 GEMKSEVIG 164
G+ +V+G
Sbjct: 84 GQPVDKVVG 92
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC + P +EK A ++ + FY +DV++VS D+ ++ +S +
Sbjct: 30 VVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVS-DVAQKAEVSSMPTLIFY 87
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ + V+G + A +
Sbjct: 88 KGGKEVTRVVGANPAAI 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
+E +ND D ++L E S P+L+D+ A WC C + P ++++A E+ KLK
Sbjct: 1 MEAGAVND-DTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVK 56
Query: 135 VDVNKVSKDLVKRG-----NISIWKDGEMKSEVIGGHKAWLVIEEVREMIK 180
++ ++ + G I ++K G+ +IG +++ V + +
Sbjct: 57 LNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
E +P ++D+ A WC C + P L++LA E+D ++ Y VD K
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEK 80
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD-----LVKRGNIS 151
++P+L+D+ A+WC + P LE++A E T L +DV+ + +V +
Sbjct: 27 NKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI 86
Query: 152 IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182
++KDG+ ++G ++ E+ +++
Sbjct: 87 LFKDGQPVKRIVGAKGKAALLRELSDVVPNL 117
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSKDLVKRGNISIW 153
+P ++D+ A WC C + P LE+L+ E+ K+ Y V+V+K +++D + +IW
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIW 110
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYV 135
E++ +NDS + +L E P+++D+ A WC + P +++LA E+ K+ Y +
Sbjct: 1 EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKL 56
Query: 136 DVNKVSKDLVKRGNIS------IWKDGEMKSEVIGG 165
+ ++ + + + NI +K+GE K +IG
Sbjct: 57 NTDE-APGIATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
++ID+ A+WC C ++P L KL + ++F DV++ S D+ K ++ +
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDVDE-SPDIAKECEVTAMPTFVLG 90
Query: 154 KDGEMKSEVIGGHKAWL 170
KDG++ ++IG + L
Sbjct: 91 KDGQLIGKIIGANPTAL 107
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P LE++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK 146
D L + +E +PI++D+ A+WC C + P E L+ ++ K+ F VDV+ V+
Sbjct: 14 DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA 73
Query: 147 RG-----NISIWKDGEMKSEVIG 164
G ++KDG +++G
Sbjct: 74 AGITAMPTFHVYKDGVKADDLVG 96
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WK 154
+L+D+ A WC C + P LE++A E++ KL +DV++ K + SI +K
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 155 DGEMKSEVIGGH 166
DG+ ++G
Sbjct: 82 DGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WK 154
+L+D+ A WC C + P LE++A E++ KL +DV++ K + SI +K
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 155 DGEMKSEVIGGH 166
DG+ ++G
Sbjct: 81 DGQPVEVLVGAQ 92
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------S 151
+P+++D WC C + PK EKLA E+ + F +D N+ +K L K I
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 96
Query: 152 IWKDGEMKSEVIGG 165
I K+ + EV G
Sbjct: 97 ILKENSVVGEVTGA 110
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------S 151
+P+++D WC C + PK EKLA E+ + F +D N+ +K L K I
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 84
Query: 152 IWKDGEMKSEVIGG 165
I K+ + EV G
Sbjct: 85 ILKENSVVGEVTGA 98
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 51/89 (57%), Gaps = 13/89 (14%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A WC C + P E+ + + TK+ F VDV++VS ++ ++ NI+ ++
Sbjct: 29 VIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVS-EVTEKENITSMPTFKVY 86
Query: 154 KDGEMKSEVIGGHKAWLVIEEVREMIKKF 182
K+G ++G + + L +++I+K+
Sbjct: 87 KNGSSVDTLLGANDSAL-----KQLIEKY 110
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---V 140
D D L++A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDLVKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 141 SKDLVKRG--NISIWKDGEMKSEVIG 164
+ ++RG + ++K+GE+ + +G
Sbjct: 67 APKYIERGIPTLLLFKNGEVAATKVG 92
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
+A + +P+L+D+ A+WC C + P LE+ A K+ ++V++ + + G +S
Sbjct: 12 QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMS 71
Query: 152 I-----WKDGEMKSEVIG 164
I +K GE ++IG
Sbjct: 72 IPTLILFKGGEPVKQLIG 89
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----W 153
P+L+D+ A+WC C + P LE+ A K+ ++V++ + + G +SI +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 154 KDGEMKSEVIG 164
K GE ++IG
Sbjct: 79 KGGEPVKQLIG 89
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
P+++D+ A WC C L P+LEK+ A+ K+ VD++
Sbjct: 33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 72
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 11 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 68 APKYGIRGTPTLLLFKNGEVAATKVG 93
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 20 DSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 76
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 77 APKYGIRGIPTLLLFKNGEVAATKVG 102
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRGNISI-----WKDGEMKSEVIG 164
K G SI +K+GE+ + +G
Sbjct: 67 APKYGIRSIPTLLLFKNGEVAATKVG 92
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
+++D+ A+WC + P +EK + ++ + FY +DV+++ D+ ++ +S ++
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLDVDELG-DVAQKNEVSAMPTLLLF 84
Query: 154 KDGEMKSEVIGGHKAWL 170
K+G+ ++V+G + A +
Sbjct: 85 KNGKEVAKVVGANPAAI 101
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WK 154
+L D+ A WC + P LE+L E KLK +DV++ + K G +SI K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 155 DGEMKSEVIG 164
DGE+ +G
Sbjct: 80 DGEVVETSVG 89
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
+ D LD L +A + +++D+ A+WC C + PKL +L+ +F + VDV++
Sbjct: 10 VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67
Query: 140 VSKDLVKRGNIS 151
+D+ NIS
Sbjct: 68 -CEDIAMEYNIS 78
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WKD 155
L+D+ A+WC + P LE+LAA+++ K +DV++ K +SI +KD
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 156 GEMKSEVIG 164
G+ +V+G
Sbjct: 84 GQPVDKVVG 92
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WK 154
+L D+ A WC + P LE+L E KLK +DV++ + K G +SI K
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79
Query: 155 DGEMKSEVIG 164
DGE+ +G
Sbjct: 80 DGEVVETSVG 89
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
+ D LD L +A + +++D+ A+WC C + PKL +L+ +F + VDV++
Sbjct: 5 VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 140 VSKDLVKRGNIS 151
+D+ NIS
Sbjct: 63 -CEDIAMEYNIS 73
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----WKD 155
L+D+ A+ C C + P LE+LAA+++ K +DV++ K +SI +KD
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 156 GEMKSEVIG 164
G+ +V+G
Sbjct: 83 GQPVDKVVG 91
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+ +A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG-----NISIWK 154
IL+D+ A WC C + P L+++A E+ KL +++++ K G + ++K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 155 DGEMKSEVIG 164
+GE+ + +G
Sbjct: 83 NGEVAATKVG 92
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG-----NISIWK 154
IL+D+ A WC C + P L+++A E+ KL +++++ K G + ++K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82
Query: 155 DGEMKSEVIG 164
+GE+ + +G
Sbjct: 83 NGEVAATKVG 92
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAACKVG 92
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 89 ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
IL RA+ P+L+D+ A WC C + P+ + AA +++ +D
Sbjct: 56 ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQ 105
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+G++ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGDVAATKVG 92
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A ++ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISI-----W 153
P+L+D+ A+WC C + P LE+ A K+ ++V++ + + G +SI +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 154 KDGEMKSEVIG 164
K G ++IG
Sbjct: 79 KGGRPVKQLIG 89
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
+A + +P+L+D+ A+WC C + P LE+ A K+ ++V++ + + G +S
Sbjct: 12 QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMS 71
Query: 152 I-----WKDGEMKSEVIG 164
I +K G ++IG
Sbjct: 72 IPTLILFKGGRPVKQLIG 89
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK 146
D L + +E +PI++ + A+WC C + P E L+ ++ K+ F VDV+ V+
Sbjct: 14 DAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA 73
Query: 147 RG-----NISIWKDGEMKSEVIG 164
G ++KDG +++G
Sbjct: 74 AGITAMPTFHVYKDGVKADDLVG 96
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
++ID+ ASWC C + P LA +F + F VDV+++ K + ++ ++
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDEL-KPIAEQFSVEAMPTFLFM 94
Query: 154 KDGEMKSEVIGGHK 167
K+G++K V+G K
Sbjct: 95 KEGDVKDRVVGAIK 108
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
++DS DQ +L+A L +L+D+ A WC C + P L ++ EF K+ V+++
Sbjct: 7 VSDS-SFDQDVLKASGL---VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID 61
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA-AEFDTKLKFYYVDVNKVSKDLVKRG-----NISIW 153
++ID+ A+WC C + P EK++ K+ FY VDV++ S+ + G +
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFF 95
Query: 154 KDGEMKSEVIGGHKAWL 170
K+G+ V+G + L
Sbjct: 96 KNGQKIDTVVGADPSKL 112
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWC-RKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142
D D +L+A IL+D+ A WC R C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG 66
Query: 143 DLVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 TAPKYGIRGIPTLLLFKNGEVAATKVG 93
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141
D++ +Q++ + L+ + C C + P LE+L ++ FYYVDV +
Sbjct: 10 DTNTFEQLIYDE---GKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE-E 65
Query: 142 KDLVKRGN------ISIWKDGEMKSEVIG 164
K L +R + I +KDGE K + G
Sbjct: 66 KTLFQRFSLKGVPQILYFKDGEYKGKXAG 94
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
I++D+ A WC C + PK+E LA E +++F VDV++
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQ 60
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 93 AQELS-QPI-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
AQE++ P+ L+D+ A WC C + P LE+LA + +LK V+V++
Sbjct: 44 AQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE 92
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------S 151
+P+++D WC + PK EKLA E+ + F +D N+ +K L K I
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFK 83
Query: 152 IWKDGEMKSEVIGG 165
I K+ + EV G
Sbjct: 84 ILKENSVVGEVTGA 97
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
++ +Q +L++ +P+L+D+ A WC C + P +E+LA E++ K+K V+V++
Sbjct: 9 ENFEQEVLKS---DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT 65
Query: 144 LVKRGNISI-----WKDGEMKSEVIGGH 166
+ G SI +K+G++ ++G
Sbjct: 66 AAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 96 LSQPIL-IDWM-ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-----DLVKRG 148
+S+ IL + W A WC C ++ +EK+A EF T +KF VD + S+ +++
Sbjct: 34 MSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT-VKFAKVDADNNSEIVSKCRVLQLP 92
Query: 149 NISIWKDGEMKSEVIGGHKAWLVIEEVREMIK 180
I + G+M VIG + L +++R++IK
Sbjct: 93 TFIIARSGKMLGHVIGANPGMLR-QKLRDIIK 123
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC + P L+++A E+ KL +++++
Sbjct: 30 DSFDTDVLKAD---GAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 86
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 87 APKYGIRGIPTLLLFKNGEVAATKVG 112
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 30 SGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQI 89
SG + +L+K A + + ++ + + VR E PD + P V L + ++ D++
Sbjct: 88 SGYPTIKILKKGQAVDYEGSRTQEEIVAK-VR-EVSQPDWTPPPEVTL--VLTKENFDEV 143
Query: 90 LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVSKDLVK 146
+ A IL+++ A WC C L P+ EK A E + + VD DL K
Sbjct: 144 VNDADI----ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT-AETDLAK 198
Query: 147 RGNISIW 153
R ++S +
Sbjct: 199 RFDVSGY 205
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA 123
+L+++ A WC C P+ EK+A
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIA 58
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC C + L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG-----NISIWK 154
+++D+ A+WC C +KP L+ ++ + + F VDV+ K G + ++K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFK 81
Query: 155 DGEMKSEVIG 164
+GE+ + +G
Sbjct: 82 NGEVAATKVG 91
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD 143
D D +L+A IL+D+ A WC + P L+++A E+ KL +++++
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 66
Query: 144 LVKRG-----NISIWKDGEMKSEVIG 164
K G + ++K+GE+ + +G
Sbjct: 67 APKYGIRGIPTLLLFKNGEVAATKVG 92
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKV 140
D+ D ++ A IL+++ A WC C L P+ EK A E + + VD +
Sbjct: 15 DNFDDVVNNADI----ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 141 SKDLVKRGNISIW 153
+ DL KR ++S +
Sbjct: 71 T-DLAKRFDVSGY 82
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151
++ID+ A+WC C + PKLE+L+ + + F VDV++ +D+ + I+
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDE-CEDIAQDNQIA 72
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153
++ID+ ASWC + P LA +F + F VDV+++ K + ++ ++
Sbjct: 40 VVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDEL-KPIAEQFSVEAMPTFLFM 97
Query: 154 KDGEMKSEVIGGHK 167
K+G++K V+G K
Sbjct: 98 KEGDVKDRVVGAIK 111
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139
+ +L R +E +L+D+ A+WC C L L + AE + + F VDV+K
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSI-AEANKDVTFIKVDVDK 64
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ ++D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-AQDVASEAEVKATPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDVN +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVND-CQDVASECEVKCMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAA-----EFDTKLKFYYVD--VNKVSKDLVKRGNISI 152
+LI++ A WC C L PK E+L A EF ++ VD N V ++ I +
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKL 87
Query: 153 WKDG 156
+ G
Sbjct: 88 YPAG 91
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137
P +ID+ A WC C P + AAE K++F V+
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNT 95
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
IN+S+ L Q+L Q ++ P+L + + + C+ L P LE LAA+++ + +D +
Sbjct: 12 INESN-LQQVL--EQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCD 67
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASESEVKSMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
QP+L+ + ASWC C + P + A + +LK ++++
Sbjct: 26 QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID 66
>pdb|1WA4|A Chain A, Crystal Structure Of The M131f L135a Evad Double Mutant
Length = 205
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 38 LQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPI-NDSDHLDQILLRAQEL 96
L+ ++ F ++ ASRS + ++ + AL P L P + +EPI +D D + L AQ
Sbjct: 125 LEDDTVFSYM--ASRSYVTQDELALSALDPALGLPIDIGVEPIVSDRDRVAITLAEAQR- 181
Query: 97 SQPILIDWMAS 107
Q +L D+ S
Sbjct: 182 -QGLLPDYTTS 191
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKSMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKCTPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC------IYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC C + P+++K A+
Sbjct: 9 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD 65
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC------IYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC C + P+++K A+
Sbjct: 6 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD 62
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-CQDVASEXEVKCMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC C +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDD-CQDVASECEVKCMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 78 EPINDSDHLD---QILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYY 134
EP+ D LD Q + A +S+P +I + ASWC C P L ++A E T + FY
Sbjct: 9 EPLPDFLLLDPKGQPVTPAT-VSKPAVIVFWASWCTVCKAEFPGLHRVAEE--TGVPFYV 65
Query: 135 V 135
+
Sbjct: 66 I 66
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+++ D+I+ ++ +LI++ A WC C L+PK ++L
Sbjct: 359 AENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELG 396
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 86 LDQILLRAQELSQPILIDW-MASWCRKCIYLKPKLEKLAAEF 126
+D ++ + ++I W MA+WC C+Y+ L++L ++
Sbjct: 25 IDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY 66
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+++ D+I+ ++ +LI++ A WC C L+PK ++L
Sbjct: 34 AENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELG 71
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC +KP L+ ++ + + F VDV+ S+D+ + +
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD-SQDVASESEVKSMPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 22/100 (22%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWC--------------RKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 11 DSFDTDVLKAD---GAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK 67
Query: 130 LKFYYVDVNKVSKDLVKRG-----NISIWKDGEMKSEVIG 164
L +++++ K G + ++K+GE+ + +G
Sbjct: 68 LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 107
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWC------RKCIYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC K + P+++K A+
Sbjct: 9 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVASKEFEKYTFSDPQVQKALAD 65
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF---DTKLKFYYVDVNKVSK-----DLVKRGNIS 151
+L+++ A WC C P+ EK+A+ D + +D S D+ I
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIK 96
Query: 152 IWKDGEMKSEVIGGHKAWLVIEEVREM 178
I K G+ + G ++ +VRE+
Sbjct: 97 ILKKGQA-VDYDGSRTQEEIVAKVREV 122
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEK----LAAEF--DTKLKFYYV 135
D++++D+IL A L+++ A WCR L P E+ + EF + ++ F V
Sbjct: 11 DTENIDEILNNADV----ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 136 DVNKVSKDLVKRGNISIW 153
D ++ S D+ +R IS +
Sbjct: 67 DCDQHS-DIAQRYRISKY 83
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC +KP L+ ++ + + F VDV+ ++D+ + +
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKY-SNVIFLEVDVDD-AQDVASEAEVKATPTFQFF 80
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 81 KKGQKVGEFSGANKEKL 97
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138
IN+S+ L Q L Q + P+L + + + C+ L P LE LAA++ + +D +
Sbjct: 12 INESN-LQQTL--EQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCD 67
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK----VSKDLVKR-GNISIWK 154
+++D+ A+WC +KP L+ ++ + + F VDV+ S+ VKR +K
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDCQDVASECEVKRMPTFQFFK 81
Query: 155 DGEMKSEVIGGHKAWL 170
G+ E G +K L
Sbjct: 82 KGQKVGEFSGANKEKL 97
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF--YYVDVNKVSKDLVKRGNIS---IWK 154
+L+D A WC C +P +K+A ++ K F VD N+ D NI I+
Sbjct: 24 VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFV 83
Query: 155 DGEMKSEVIGG 165
+G++ ++G
Sbjct: 84 NGQLVDSLVGA 94
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|1OFN|A Chain A, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
pdb|1OFN|B Chain B, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
pdb|1OI6|A Chain A, Structure Determination Of The Tmp-Complex Of Evad
pdb|1OI6|B Chain B, Structure Determination Of The Tmp-Complex Of Evad
Length = 205
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 51 SRSKSARRDVRVEALWPDLSRPTSVELEPI-NDSDHLDQILLRAQELSQPILIDWMAS 107
SRS + ++ + AL P L P + +EPI +D D + L AQ Q +L D+ S
Sbjct: 136 SRSYVTQDELALSALDPALGLPIDIGVEPIVSDRDRVAITLAEAQR--QGLLPDYTTS 191
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 214 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 245
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 228
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 228
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 203 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 234
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 228
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 220 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 251
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 233
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 233
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 228
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 232
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 232
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 135 VDVNKVSKDLVKRGN-ISIWKDGEMKSEVIGG 165
VD+N + + + R + + ++KDG++K +VIGG
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKDGKLKYQVIGG 228
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNI------SIW 153
+++D+ A+WC +KP L+ ++ + + F VDV+ +D+ + +
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDC-QDVASECEVKSMPTFQFF 91
Query: 154 KDGEMKSEVIGGHKAWL 170
K G+ E G +K L
Sbjct: 92 KKGQKVGEFSGANKEKL 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,218,492
Number of Sequences: 62578
Number of extensions: 194790
Number of successful extensions: 626
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 132
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)