Query 030114
Match_columns 183
No_of_seqs 236 out of 1522
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 6.4E-25 1.4E-29 157.5 11.0 99 77-183 44-148 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 1.6E-21 3.4E-26 134.6 11.5 93 83-182 7-105 (106)
3 PHA02278 thioredoxin-like prot 99.9 3.4E-21 7.4E-26 132.6 11.7 90 81-178 2-100 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 8.7E-22 1.9E-26 137.0 7.8 83 83-168 2-90 (114)
5 PLN00410 U5 snRNP protein, DIM 99.9 7.6E-21 1.7E-25 137.1 11.2 86 77-165 5-98 (142)
6 COG3118 Thioredoxin domain-con 99.9 4.3E-21 9.4E-26 151.3 10.3 100 77-183 25-130 (304)
7 cd02948 TRX_NDPK TRX domain, T 99.8 3.3E-20 7.1E-25 127.5 12.1 92 79-181 3-101 (102)
8 cd02985 TRX_CDSP32 TRX family, 99.8 3.9E-20 8.6E-25 127.4 12.0 92 82-181 2-101 (103)
9 PF00085 Thioredoxin: Thioredo 99.8 1.8E-19 3.8E-24 123.0 12.6 93 82-182 5-103 (103)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.2E-19 2.6E-24 126.8 11.8 95 77-178 11-112 (113)
11 cd02956 ybbN ybbN protein fami 99.8 2.1E-19 4.6E-24 121.7 11.2 89 85-180 2-96 (96)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1E-19 2.3E-24 124.6 9.5 92 77-178 3-100 (101)
13 cd03065 PDI_b_Calsequestrin_N 99.8 2.5E-19 5.5E-24 126.2 10.9 96 77-182 11-118 (120)
14 PRK09381 trxA thioredoxin; Pro 99.8 5.7E-19 1.2E-23 122.5 12.6 99 76-183 4-108 (109)
15 cd02989 Phd_like_TxnDC9 Phosdu 99.8 6.2E-19 1.3E-23 123.4 12.0 98 76-179 5-112 (113)
16 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.1E-19 6.7E-24 122.7 9.8 93 78-179 4-104 (104)
17 PRK10996 thioredoxin 2; Provis 99.8 9.1E-19 2E-23 126.9 12.4 93 82-183 41-139 (139)
18 cd02963 TRX_DnaJ TRX domain, D 99.8 5.1E-19 1.1E-23 123.4 10.4 95 82-182 10-111 (111)
19 cd02999 PDI_a_ERp44_like PDIa 99.8 1.7E-18 3.7E-23 118.6 10.1 78 95-179 16-100 (100)
20 KOG0908 Thioredoxin-like prote 99.8 8.3E-19 1.8E-23 134.7 8.7 98 76-182 2-105 (288)
21 cd02957 Phd_like Phosducin (Ph 99.8 1.7E-18 3.6E-23 121.2 8.5 99 76-179 5-112 (113)
22 cd02994 PDI_a_TMX PDIa family, 99.8 8.4E-18 1.8E-22 114.9 11.8 92 77-181 3-101 (101)
23 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.9E-18 1.1E-22 117.7 10.6 93 77-179 3-108 (108)
24 cd02950 TxlA TRX-like protein 99.8 6.4E-18 1.4E-22 122.9 11.5 92 83-182 10-109 (142)
25 PTZ00051 thioredoxin; Provisio 99.8 7.7E-18 1.7E-22 114.4 10.9 90 77-177 2-97 (98)
26 cd03005 PDI_a_ERp46 PDIa famil 99.8 6.2E-18 1.3E-22 115.5 10.4 91 78-179 3-102 (102)
27 cd02984 TRX_PICOT TRX domain, 99.8 9.6E-18 2.1E-22 113.6 10.9 90 82-179 1-96 (97)
28 cd02987 Phd_like_Phd Phosducin 99.8 1E-17 2.2E-22 125.7 11.6 105 74-182 61-174 (175)
29 cd02965 HyaE HyaE family; HyaE 99.8 1.1E-17 2.3E-22 115.8 10.6 86 82-176 16-109 (111)
30 cd02986 DLP Dim1 family, Dim1- 99.7 1.6E-17 3.4E-22 115.0 10.6 75 83-160 2-82 (114)
31 TIGR01068 thioredoxin thioredo 99.7 3.6E-17 7.8E-22 111.0 12.1 93 83-183 3-101 (101)
32 cd02949 TRX_NTR TRX domain, no 99.7 5.8E-17 1.2E-21 110.2 12.0 87 86-180 5-97 (97)
33 cd02962 TMX2 TMX2 family; comp 99.7 5.2E-17 1.1E-21 119.0 12.4 88 75-166 28-128 (152)
34 TIGR01126 pdi_dom protein disu 99.7 3.7E-17 8.1E-22 111.3 10.6 93 82-183 2-102 (102)
35 cd02997 PDI_a_PDIR PDIa family 99.7 5.3E-17 1.2E-21 111.1 11.3 92 78-179 3-104 (104)
36 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.7E-17 1E-21 112.5 9.9 92 79-179 4-108 (109)
37 PTZ00443 Thioredoxin domain-co 99.7 5.8E-17 1.3E-21 125.7 11.0 101 76-182 31-138 (224)
38 cd02953 DsbDgamma DsbD gamma f 99.7 4.2E-17 9E-22 112.2 8.2 89 84-180 2-104 (104)
39 cd03000 PDI_a_TMX3 PDIa family 99.7 2.5E-16 5.4E-21 108.4 10.5 88 84-182 7-103 (104)
40 cd03001 PDI_a_P5 PDIa family, 99.7 3E-16 6.4E-21 107.3 10.6 93 78-179 3-102 (103)
41 cd02951 SoxW SoxW family; SoxW 99.7 8.9E-16 1.9E-20 109.0 10.7 89 85-181 5-117 (125)
42 TIGR01295 PedC_BrcD bacterioci 99.7 1.1E-15 2.5E-20 108.2 11.2 89 82-180 12-121 (122)
43 cd02975 PfPDO_like_N Pyrococcu 99.7 6.8E-16 1.5E-20 108.0 9.9 82 95-182 20-109 (113)
44 cd02993 PDI_a_APS_reductase PD 99.6 2.3E-15 5E-20 104.5 9.9 97 77-179 3-109 (109)
45 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.6E-15 3.5E-20 103.7 8.8 93 78-179 3-105 (105)
46 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 2E-15 4.3E-20 103.1 9.1 92 78-179 3-104 (104)
47 cd02988 Phd_like_VIAF Phosduci 99.6 2.6E-15 5.7E-20 114.2 10.3 101 74-181 81-190 (192)
48 cd02961 PDI_a_family Protein D 99.6 2.4E-15 5.2E-20 101.4 8.9 87 83-178 5-100 (101)
49 cd02947 TRX_family TRX family; 99.6 1.6E-14 3.4E-19 95.6 11.0 85 85-179 2-92 (93)
50 KOG0190 Protein disulfide isom 99.6 5.1E-15 1.1E-19 125.1 8.5 98 75-182 25-131 (493)
51 cd02959 ERp19 Endoplasmic reti 99.6 6.7E-15 1.4E-19 103.6 6.5 93 85-177 7-111 (117)
52 PTZ00062 glutaredoxin; Provisi 99.6 2.6E-14 5.5E-19 109.4 10.1 84 80-181 3-92 (204)
53 TIGR01130 ER_PDI_fam protein d 99.6 4.4E-14 9.5E-19 120.0 11.7 95 78-182 4-108 (462)
54 TIGR00424 APS_reduc 5'-adenyly 99.5 5.3E-14 1.1E-18 119.3 10.7 100 76-181 352-461 (463)
55 PTZ00102 disulphide isomerase; 99.5 6.8E-14 1.5E-18 119.7 11.6 95 77-182 34-137 (477)
56 PRK00293 dipZ thiol:disulfide 99.5 6.8E-14 1.5E-18 122.3 11.5 103 75-182 452-569 (571)
57 TIGR00411 redox_disulf_1 small 99.5 1.4E-13 2.9E-18 90.3 10.1 76 101-183 3-82 (82)
58 cd02982 PDI_b'_family Protein 99.5 1.3E-13 2.7E-18 94.3 8.4 83 96-183 11-103 (103)
59 cd02992 PDI_a_QSOX PDIa family 99.5 1.1E-13 2.3E-18 97.0 8.1 76 78-157 4-89 (114)
60 cd02952 TRP14_like Human TRX-r 99.5 1.2E-13 2.5E-18 97.2 8.2 77 80-158 6-102 (119)
61 PTZ00102 disulphide isomerase; 99.5 1.5E-13 3.2E-18 117.7 10.4 97 77-182 359-464 (477)
62 PLN02309 5'-adenylylsulfate re 99.5 3E-13 6.5E-18 114.6 11.4 99 77-182 347-456 (457)
63 cd03007 PDI_a_ERp29_N PDIa fam 99.5 1.9E-13 4.1E-18 95.5 7.5 88 82-182 7-115 (116)
64 TIGR02738 TrbB type-F conjugat 99.5 6.9E-13 1.5E-17 97.4 10.2 83 95-183 48-153 (153)
65 PRK14018 trifunctional thiored 99.4 8E-13 1.7E-17 113.5 10.7 81 95-180 54-170 (521)
66 PRK15412 thiol:disulfide inter 99.4 1.4E-12 3.1E-17 98.7 10.7 83 96-181 67-178 (185)
67 PHA02125 thioredoxin-like prot 99.4 6.6E-12 1.4E-16 81.4 9.4 60 101-167 2-64 (75)
68 TIGR00385 dsbE periplasmic pro 99.4 5E-12 1.1E-16 94.7 9.8 81 95-182 61-170 (173)
69 KOG0912 Thiol-disulfide isomer 99.4 1.5E-12 3.2E-17 103.1 7.1 91 83-182 3-105 (375)
70 TIGR02187 GlrX_arch Glutaredox 99.4 5.7E-12 1.2E-16 97.6 10.0 80 97-182 19-110 (215)
71 cd03008 TryX_like_RdCVF Trypar 99.4 5E-12 1.1E-16 92.0 8.8 47 95-141 23-77 (146)
72 KOG0190 Protein disulfide isom 99.4 1.2E-12 2.6E-17 110.9 6.2 92 82-181 372-471 (493)
73 PF13098 Thioredoxin_2: Thiore 99.3 1.6E-12 3.6E-17 90.1 5.8 81 95-179 3-112 (112)
74 TIGR01130 ER_PDI_fam protein d 99.3 4.4E-12 9.6E-17 107.7 9.4 95 77-182 348-453 (462)
75 cd03010 TlpA_like_DsbE TlpA-li 99.3 6E-12 1.3E-16 89.3 8.4 72 95-168 23-123 (127)
76 TIGR00412 redox_disulf_2 small 99.3 8.5E-12 1.8E-16 81.1 8.2 70 101-179 2-75 (76)
77 cd02955 SSP411 TRX domain, SSP 99.3 1.3E-11 2.9E-16 87.5 9.7 74 91-165 9-100 (124)
78 PRK03147 thiol-disulfide oxido 99.3 3.8E-11 8.2E-16 89.4 11.8 82 96-181 60-170 (173)
79 cd02958 UAS UAS family; UAS is 99.3 5.3E-11 1.2E-15 83.1 11.2 96 85-180 5-112 (114)
80 TIGR02187 GlrX_arch Glutaredox 99.3 3.5E-11 7.5E-16 93.2 10.6 77 96-181 131-214 (215)
81 PTZ00056 glutathione peroxidas 99.3 5.5E-11 1.2E-15 91.1 11.0 43 96-138 38-81 (199)
82 cd02964 TryX_like_family Trypa 99.3 2.3E-11 5.1E-16 87.0 8.0 46 95-140 15-63 (132)
83 PLN02919 haloacid dehalogenase 99.3 2.4E-11 5.1E-16 112.8 10.1 82 96-181 419-534 (1057)
84 KOG4277 Uncharacterized conser 99.3 8.1E-12 1.7E-16 99.1 5.9 80 95-180 41-129 (468)
85 PLN02399 phospholipid hydroper 99.2 1.7E-10 3.8E-15 90.2 12.3 43 96-138 98-141 (236)
86 cd03009 TryX_like_TryX_NRX Try 99.2 3.7E-11 8.1E-16 85.7 7.9 66 96-161 17-115 (131)
87 TIGR02740 TraF-like TraF-like 99.2 1.3E-10 2.8E-15 93.0 11.6 79 95-179 164-260 (271)
88 KOG0191 Thioredoxin/protein di 99.2 5.6E-11 1.2E-15 99.5 8.8 90 83-181 37-132 (383)
89 PRK13728 conjugal transfer pro 99.2 1.1E-10 2.5E-15 87.5 9.4 77 101-179 73-171 (181)
90 cd02967 mauD Methylamine utili 99.2 3E-11 6.4E-16 83.9 5.9 54 96-150 20-76 (114)
91 TIGR02540 gpx7 putative glutat 99.2 1.9E-10 4.2E-15 84.3 10.1 84 96-183 21-153 (153)
92 cd02973 TRX_GRX_like Thioredox 99.2 1E-10 2.3E-15 73.8 7.5 57 101-159 3-63 (67)
93 PF13905 Thioredoxin_8: Thiore 99.2 1E-10 2.2E-15 78.7 7.2 46 97-142 1-48 (95)
94 cd02960 AGR Anterior Gradient 99.2 1E-10 2.2E-15 83.3 7.1 88 80-167 6-101 (130)
95 PLN02412 probable glutathione 99.2 3.2E-10 6.8E-15 84.5 10.1 43 96-138 28-71 (167)
96 cd02966 TlpA_like_family TlpA- 99.1 3E-10 6.4E-15 77.7 8.2 68 96-164 18-116 (116)
97 TIGR01626 ytfJ_HI0045 conserve 99.1 3.1E-10 6.7E-15 85.5 8.9 84 95-182 57-182 (184)
98 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 5.2E-10 1.1E-14 74.8 8.7 69 96-168 11-83 (89)
99 cd03012 TlpA_like_DipZ_like Tl 99.1 2.2E-10 4.8E-15 81.3 7.1 42 96-137 22-64 (126)
100 PF08534 Redoxin: Redoxin; In 99.1 9E-10 2E-14 79.8 9.5 72 96-167 27-136 (146)
101 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 1E-09 2.2E-14 77.1 9.6 75 95-177 18-120 (123)
102 TIGR02661 MauD methylamine deh 99.1 5.1E-10 1.1E-14 85.1 7.9 65 95-161 72-162 (189)
103 cd00340 GSH_Peroxidase Glutath 99.1 8.7E-10 1.9E-14 80.8 8.1 42 96-138 21-63 (152)
104 KOG0914 Thioredoxin-like prote 99.1 2.1E-10 4.5E-15 87.1 4.9 89 75-166 124-225 (265)
105 smart00594 UAS UAS domain. 99.0 2.6E-09 5.7E-14 75.6 10.1 92 84-179 14-121 (122)
106 PF13899 Thioredoxin_7: Thiore 99.0 4.4E-10 9.5E-15 73.9 5.5 59 84-142 4-65 (82)
107 PRK11509 hydrogenase-1 operon 99.0 7.3E-09 1.6E-13 73.9 11.0 90 84-182 25-123 (132)
108 COG4232 Thiol:disulfide interc 99.0 1.6E-09 3.4E-14 93.1 8.0 97 78-181 457-566 (569)
109 KOG0191 Thioredoxin/protein di 98.9 4.6E-09 1E-13 88.0 8.8 97 77-182 146-251 (383)
110 PTZ00256 glutathione peroxidas 98.9 1.1E-08 2.5E-13 77.2 9.6 43 96-138 39-83 (183)
111 KOG1731 FAD-dependent sulfhydr 98.9 1E-09 2.2E-14 93.6 3.8 68 81-151 44-115 (606)
112 COG0526 TrxA Thiol-disulfide i 98.9 6.8E-09 1.5E-13 70.5 7.2 72 96-168 31-113 (127)
113 cd02969 PRX_like1 Peroxiredoxi 98.8 4.6E-08 1E-12 72.9 9.8 44 96-139 24-68 (171)
114 PRK10606 btuE putative glutath 98.8 5.8E-08 1.3E-12 73.4 8.7 42 96-138 24-66 (183)
115 KOG2501 Thioredoxin, nucleored 98.7 2E-08 4.3E-13 73.2 5.5 47 96-142 32-81 (157)
116 PF02114 Phosducin: Phosducin; 98.7 4.6E-08 9.9E-13 77.9 7.2 104 75-182 125-237 (265)
117 cd03017 PRX_BCP Peroxiredoxin 98.7 1.1E-07 2.4E-12 68.2 8.4 80 96-179 22-139 (140)
118 cd03014 PRX_Atyp2cys Peroxired 98.7 1.2E-07 2.5E-12 68.5 8.6 70 96-166 25-130 (143)
119 cd03015 PRX_Typ2cys Peroxiredo 98.7 2E-07 4.4E-12 69.6 9.5 86 96-181 28-155 (173)
120 TIGR03137 AhpC peroxiredoxin. 98.7 2E-07 4.3E-12 70.7 9.4 85 96-180 30-153 (187)
121 KOG1672 ATP binding protein [P 98.7 1E-07 2.2E-12 71.3 7.5 87 75-167 66-158 (211)
122 PRK00522 tpx lipid hydroperoxi 98.6 3.2E-07 6.9E-12 68.3 9.5 43 96-139 43-86 (167)
123 cd03018 PRX_AhpE_like Peroxire 98.6 2.8E-07 6E-12 66.8 8.9 83 98-180 29-148 (149)
124 TIGR02196 GlrX_YruB Glutaredox 98.6 3.4E-07 7.4E-12 57.9 7.8 66 101-180 2-74 (74)
125 PRK09437 bcp thioredoxin-depen 98.6 9.2E-07 2E-11 64.6 10.3 73 96-168 29-142 (154)
126 cd02991 UAS_ETEA UAS family, E 98.5 2E-06 4.4E-11 60.3 10.7 94 85-181 5-115 (116)
127 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 8.6E-07 1.9E-11 62.0 8.8 46 96-141 24-71 (124)
128 PRK10382 alkyl hydroperoxide r 98.5 1.8E-06 3.8E-11 65.6 9.9 85 96-180 30-153 (187)
129 cd02970 PRX_like2 Peroxiredoxi 98.5 1.6E-06 3.4E-11 62.6 9.1 56 96-151 22-81 (149)
130 PRK15000 peroxidase; Provision 98.5 2.2E-06 4.9E-11 65.7 10.1 85 96-180 33-159 (200)
131 KOG0913 Thiol-disulfide isomer 98.4 9.6E-08 2.1E-12 73.5 1.6 88 81-180 29-123 (248)
132 TIGR02180 GRX_euk Glutaredoxin 98.4 1.5E-06 3.2E-11 56.7 7.0 56 101-158 1-64 (84)
133 PF03190 Thioredox_DsbH: Prote 98.4 2E-06 4.3E-11 63.5 7.9 74 87-161 27-118 (163)
134 PRK11200 grxA glutaredoxin 1; 98.4 2.7E-06 5.9E-11 56.1 7.8 72 100-182 2-82 (85)
135 cd03016 PRX_1cys Peroxiredoxin 98.3 7.3E-06 1.6E-10 62.9 10.6 84 98-181 26-152 (203)
136 PF11009 DUF2847: Protein of u 98.3 5.9E-06 1.3E-10 56.6 8.8 84 78-163 2-95 (105)
137 cd02971 PRX_family Peroxiredox 98.3 3.8E-06 8.2E-11 60.0 8.2 44 96-139 21-66 (140)
138 PRK13191 putative peroxiredoxi 98.3 1.1E-05 2.5E-10 62.4 11.0 85 96-180 32-158 (215)
139 TIGR02200 GlrX_actino Glutared 98.3 1.5E-06 3.3E-11 55.7 4.9 36 101-142 2-37 (77)
140 cd02968 SCO SCO (an acronym fo 98.3 1.5E-06 3.3E-11 62.3 5.1 44 96-139 21-69 (142)
141 PF13192 Thioredoxin_3: Thiore 98.3 1.1E-05 2.4E-10 52.1 8.6 69 102-180 3-76 (76)
142 PRK13599 putative peroxiredoxi 98.2 1.9E-05 4.1E-10 61.3 10.7 86 96-181 27-154 (215)
143 PRK13190 putative peroxiredoxi 98.2 1E-05 2.2E-10 62.1 9.2 44 96-139 26-71 (202)
144 KOG0911 Glutaredoxin-related p 98.2 7.8E-07 1.7E-11 68.1 2.5 84 77-168 3-92 (227)
145 PTZ00137 2-Cys peroxiredoxin; 98.2 2.6E-05 5.7E-10 62.0 11.0 85 96-180 97-222 (261)
146 PRK13189 peroxiredoxin; Provis 98.2 2.9E-05 6.3E-10 60.5 10.4 85 96-180 34-160 (222)
147 PF13728 TraF: F plasmid trans 98.1 3.4E-05 7.3E-10 59.8 10.5 75 96-177 119-212 (215)
148 PTZ00253 tryparedoxin peroxida 98.1 4.1E-05 8.9E-10 58.5 9.9 85 96-180 35-161 (199)
149 PF14595 Thioredoxin_9: Thiore 98.1 1.6E-05 3.4E-10 56.8 6.7 78 96-181 40-127 (129)
150 cd01659 TRX_superfamily Thiore 98.1 2.1E-05 4.7E-10 47.0 6.3 41 101-142 1-41 (69)
151 PF02966 DIM1: Mitosis protein 98.0 0.00014 3.1E-09 51.4 10.4 79 79-160 4-88 (133)
152 TIGR02739 TraF type-F conjugat 98.0 0.00014 3.1E-09 57.6 11.1 82 96-179 149-248 (256)
153 TIGR02183 GRXA Glutaredoxin, G 98.0 4.5E-05 9.7E-10 50.5 6.9 71 101-182 2-81 (86)
154 KOG3414 Component of the U4/U6 97.9 0.00012 2.6E-09 51.3 8.5 78 79-159 7-90 (142)
155 PF06110 DUF953: Eukaryotic pr 97.9 5.2E-05 1.1E-09 53.2 6.5 71 81-151 3-88 (119)
156 COG2143 Thioredoxin-related pr 97.9 0.00016 3.4E-09 52.7 8.8 81 95-179 40-145 (182)
157 KOG3425 Uncharacterized conser 97.8 9.1E-05 2E-09 51.5 6.9 61 80-141 9-77 (128)
158 cd02976 NrdH NrdH-redoxin (Nrd 97.8 0.00017 3.7E-09 45.1 7.3 36 101-142 2-37 (73)
159 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00022 4.7E-09 46.1 7.0 54 101-158 2-63 (82)
160 TIGR03143 AhpF_homolog putativ 97.7 0.00048 1E-08 60.6 10.8 76 96-179 474-554 (555)
161 PRK10329 glutaredoxin-like pro 97.7 0.00038 8.3E-09 45.5 7.7 67 101-182 3-76 (81)
162 cd02981 PDI_b_family Protein D 97.6 0.00083 1.8E-08 44.9 8.4 89 78-181 2-96 (97)
163 TIGR02190 GlrX-dom Glutaredoxi 97.5 0.00076 1.6E-08 43.7 7.0 67 97-179 6-78 (79)
164 PRK13703 conjugal pilus assemb 97.4 0.002 4.2E-08 51.0 10.3 79 96-176 142-238 (248)
165 PRK15317 alkyl hydroperoxide r 97.4 0.0013 2.8E-08 57.3 10.2 75 97-179 115-194 (517)
166 cd02066 GRX_family Glutaredoxi 97.4 0.00047 1E-08 42.8 5.3 52 101-158 2-60 (72)
167 cd02983 P5_C P5 family, C-term 97.4 0.0026 5.7E-08 45.4 9.7 99 76-183 3-115 (130)
168 PF00462 Glutaredoxin: Glutare 97.4 0.0008 1.7E-08 41.1 6.2 53 101-159 1-60 (60)
169 TIGR02189 GlrX-like_plant Glut 97.4 0.0011 2.5E-08 44.9 7.3 52 101-158 10-71 (99)
170 COG1225 Bcp Peroxiredoxin [Pos 97.4 0.0028 6.1E-08 46.6 9.6 70 60-140 4-75 (157)
171 TIGR02194 GlrX_NrdH Glutaredox 97.3 0.0013 2.8E-08 41.8 6.8 62 102-177 2-70 (72)
172 PF13848 Thioredoxin_6: Thiore 97.3 0.0035 7.6E-08 46.5 10.1 95 77-181 79-184 (184)
173 PRK10877 protein disulfide iso 97.3 0.0021 4.5E-08 50.4 9.0 29 96-124 106-134 (232)
174 PHA03050 glutaredoxin; Provisi 97.3 0.0011 2.3E-08 45.9 6.4 55 101-158 15-79 (108)
175 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0007 1.5E-08 48.7 5.7 41 96-137 4-44 (154)
176 PF00837 T4_deiodinase: Iodoth 97.3 0.0014 3.1E-08 51.1 7.5 110 67-182 75-236 (237)
177 PF05768 DUF836: Glutaredoxin- 97.3 0.0014 2.9E-08 42.8 6.3 73 101-180 2-81 (81)
178 TIGR00365 monothiol glutaredox 97.2 0.0035 7.5E-08 42.4 7.7 57 96-158 10-77 (97)
179 KOG1752 Glutaredoxin and relat 97.1 0.0027 5.8E-08 43.5 6.6 65 85-159 6-78 (104)
180 cd03029 GRX_hybridPRX5 Glutare 97.1 0.0036 7.9E-08 39.5 6.8 63 101-179 3-71 (72)
181 KOG3171 Conserved phosducin-li 97.1 0.0013 2.8E-08 50.4 5.2 107 72-182 135-250 (273)
182 TIGR02181 GRX_bact Glutaredoxi 97.0 0.0029 6.2E-08 40.7 5.8 52 101-158 1-59 (79)
183 cd03418 GRX_GRXb_1_3_like Glut 97.0 0.0041 8.9E-08 39.4 6.4 52 101-158 2-61 (75)
184 PF01216 Calsequestrin: Calseq 96.9 0.011 2.5E-07 48.4 10.0 93 77-181 36-142 (383)
185 cd03028 GRX_PICOT_like Glutare 96.9 0.0034 7.4E-08 41.7 6.0 57 96-158 6-73 (90)
186 TIGR03140 AhpF alkyl hydropero 96.9 0.0094 2E-07 52.0 10.2 69 97-169 117-189 (515)
187 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0039 8.5E-08 39.5 5.8 52 101-158 3-61 (73)
188 cd03020 DsbA_DsbC_DsbG DsbA fa 96.8 0.0054 1.2E-07 46.6 7.0 26 96-121 76-101 (197)
189 KOG3170 Conserved phosducin-li 96.8 0.0051 1.1E-07 46.7 6.2 102 76-180 92-198 (240)
190 PRK10824 glutaredoxin-4; Provi 96.7 0.0044 9.6E-08 43.3 5.5 68 84-167 6-85 (115)
191 cd03072 PDI_b'_ERp44 PDIb' fam 96.6 0.015 3.3E-07 40.2 7.6 90 83-183 6-108 (111)
192 PF13462 Thioredoxin_4: Thiore 96.6 0.0097 2.1E-07 43.2 7.0 45 96-140 11-57 (162)
193 COG0695 GrxC Glutaredoxin and 96.4 0.025 5.5E-07 36.7 7.1 51 101-157 3-62 (80)
194 cd03019 DsbA_DsbA DsbA family, 96.4 0.0066 1.4E-07 44.9 4.8 43 96-138 14-56 (178)
195 COG0386 BtuE Glutathione perox 96.2 0.074 1.6E-06 38.9 8.9 84 95-179 23-160 (162)
196 PRK11657 dsbG disulfide isomer 96.1 0.039 8.5E-07 43.8 8.2 39 96-136 116-154 (251)
197 cd02972 DsbA_family DsbA famil 96.1 0.013 2.8E-07 38.2 4.6 38 101-138 1-38 (98)
198 PRK10638 glutaredoxin 3; Provi 96.1 0.019 4.1E-07 37.3 5.3 52 101-158 4-62 (83)
199 PRK10954 periplasmic protein d 96.0 0.012 2.5E-07 45.2 4.4 43 96-138 36-81 (207)
200 cd03073 PDI_b'_ERp72_ERp57 PDI 95.9 0.062 1.3E-06 37.2 7.3 68 110-183 31-111 (111)
201 PF07449 HyaE: Hydrogenase-1 e 95.8 0.047 1E-06 37.6 6.4 85 77-168 11-104 (107)
202 cd03067 PDI_b_PDIR_N PDIb fami 95.8 0.14 3E-06 34.8 8.4 94 78-180 4-109 (112)
203 PTZ00062 glutaredoxin; Provisi 95.7 0.061 1.3E-06 41.4 7.3 57 96-158 111-178 (204)
204 TIGR03143 AhpF_homolog putativ 95.6 0.12 2.5E-06 45.7 9.7 90 84-182 355-453 (555)
205 COG1331 Highly conserved prote 95.2 0.027 5.9E-07 50.1 4.5 73 83-160 33-123 (667)
206 cd03066 PDI_b_Calsequestrin_mi 94.7 0.45 9.8E-06 32.1 8.6 91 77-182 2-100 (102)
207 cd03013 PRX5_like Peroxiredoxi 94.2 0.16 3.4E-06 37.2 5.8 55 96-150 28-88 (155)
208 COG3019 Predicted metal-bindin 94.1 0.47 1E-05 34.1 7.7 70 98-181 25-102 (149)
209 PRK12759 bifunctional gluaredo 93.9 0.15 3.2E-06 43.4 5.8 36 101-142 4-39 (410)
210 PF07912 ERp29_N: ERp29, N-ter 93.6 1.6 3.5E-05 30.8 9.5 90 83-182 11-118 (126)
211 COG1999 Uncharacterized protei 93.5 0.89 1.9E-05 35.0 9.0 45 96-140 66-117 (207)
212 KOG1651 Glutathione peroxidase 93.4 0.44 9.6E-06 35.3 6.8 85 95-179 32-169 (171)
213 cd03035 ArsC_Yffb Arsenate Red 91.6 0.22 4.8E-06 34.1 3.1 50 102-157 2-59 (105)
214 cd03031 GRX_GRX_like Glutaredo 91.5 0.9 1.9E-05 33.1 6.3 52 101-158 2-70 (147)
215 PHA03075 glutaredoxin-like pro 90.3 0.64 1.4E-05 32.3 4.4 36 98-137 2-37 (123)
216 cd03069 PDI_b_ERp57 PDIb famil 90.1 3.3 7.2E-05 27.9 7.9 91 77-182 2-103 (104)
217 KOG2603 Oligosaccharyltransfer 89.9 1.4 3.1E-05 35.9 6.6 72 77-151 42-125 (331)
218 cd02977 ArsC_family Arsenate R 89.0 0.61 1.3E-05 31.6 3.5 33 102-140 2-34 (105)
219 COG0450 AhpC Peroxiredoxin [Po 88.4 3.6 7.8E-05 31.3 7.5 84 97-180 33-158 (194)
220 PF13743 Thioredoxin_5: Thiore 87.7 1.1 2.5E-05 33.4 4.6 35 103-137 2-36 (176)
221 PF13848 Thioredoxin_6: Thiore 87.6 3.8 8.2E-05 30.0 7.4 60 115-182 8-74 (184)
222 PF06491 Disulph_isomer: Disul 86.9 9.2 0.0002 27.3 8.5 103 75-182 16-135 (136)
223 TIGR01617 arsC_related transcr 86.3 1.8 4E-05 29.9 4.7 51 102-158 2-62 (117)
224 cd03036 ArsC_like Arsenate Red 85.7 1.3 2.9E-05 30.4 3.8 34 102-141 2-35 (111)
225 PRK01655 spxA transcriptional 85.5 1.8 4E-05 30.7 4.5 35 101-141 2-36 (131)
226 cd02990 UAS_FAF1 UAS family, F 84.3 13 0.00028 26.7 11.6 96 85-180 5-134 (136)
227 cd03032 ArsC_Spx Arsenate Redu 84.1 2.2 4.7E-05 29.4 4.3 33 102-140 3-35 (115)
228 PF02630 SCO1-SenC: SCO1/SenC; 83.4 2.4 5.2E-05 31.5 4.5 44 96-139 51-98 (174)
229 COG4545 Glutaredoxin-related p 83.2 2 4.3E-05 27.6 3.3 33 102-140 5-37 (85)
230 cd03074 PDI_b'_Calsequestrin_C 82.4 14 0.0003 25.6 8.8 87 96-183 19-120 (120)
231 cd03068 PDI_b_ERp72 PDIb famil 81.4 14 0.00031 25.1 9.2 64 77-151 2-66 (107)
232 KOG2792 Putative cytochrome C 80.1 11 0.00025 30.0 7.2 45 96-140 138-189 (280)
233 PRK12559 transcriptional regul 80.0 3.3 7.1E-05 29.5 4.0 34 101-140 2-35 (131)
234 COG1651 DsbG Protein-disulfide 80.0 3.2 6.9E-05 32.3 4.3 39 97-136 84-122 (244)
235 PF04134 DUF393: Protein of un 79.4 8.7 0.00019 26.0 5.9 57 104-165 2-67 (114)
236 PRK15317 alkyl hydroperoxide r 78.2 21 0.00046 31.2 9.3 84 84-181 8-92 (517)
237 cd03060 GST_N_Omega_like GST_N 76.7 15 0.00031 22.5 6.2 36 102-141 2-37 (71)
238 KOG2640 Thioredoxin [Function 76.6 0.77 1.7E-05 37.4 -0.1 79 96-180 75-159 (319)
239 cd03025 DsbA_FrnE_like DsbA fa 76.5 4.3 9.4E-05 30.1 4.0 29 101-129 3-31 (193)
240 PF13778 DUF4174: Domain of un 75.7 24 0.00052 24.5 8.1 67 111-181 24-110 (118)
241 PRK13344 spxA transcriptional 75.1 6.5 0.00014 27.9 4.4 34 101-140 2-35 (132)
242 TIGR03140 AhpF alkyl hydropero 73.1 38 0.00082 29.7 9.5 85 84-181 8-93 (515)
243 PF06053 DUF929: Domain of unk 73.0 8.2 0.00018 30.7 4.8 35 95-130 56-90 (249)
244 PF00255 GSHPx: Glutathione pe 72.3 16 0.00035 25.1 5.6 45 95-140 19-64 (108)
245 PRK00366 ispG 4-hydroxy-3-meth 70.0 11 0.00023 31.6 5.0 70 107-180 272-354 (360)
246 KOG2507 Ubiquitin regulatory p 66.5 54 0.0012 28.2 8.4 91 86-181 8-109 (506)
247 PF04551 GcpE: GcpE protein; 64.2 25 0.00054 29.5 6.0 70 109-182 271-358 (359)
248 PF04592 SelP_N: Selenoprotein 62.4 16 0.00034 28.8 4.3 46 95-140 24-73 (238)
249 PF02401 LYTB: LytB protein; 62.1 47 0.001 26.9 7.2 98 80-181 164-280 (281)
250 PF01323 DSBA: DSBA-like thior 60.5 23 0.00049 26.1 4.9 38 100-137 1-39 (193)
251 PF06764 DUF1223: Protein of u 58.0 84 0.0018 24.1 9.4 71 102-181 3-96 (202)
252 TIGR02654 circ_KaiB circadian 54.3 61 0.0013 21.4 7.5 70 98-168 3-78 (87)
253 cd02978 KaiB_like KaiB-like fa 54.2 54 0.0012 20.8 7.8 51 100-151 3-54 (72)
254 PF06953 ArsD: Arsenical resis 53.7 31 0.00068 24.3 4.3 48 128-180 39-99 (123)
255 cd03040 GST_N_mPGES2 GST_N fam 53.7 19 0.0004 22.3 3.0 22 101-122 2-23 (77)
256 PRK09301 circadian clock prote 51.9 75 0.0016 21.7 7.4 72 96-168 4-81 (103)
257 PRK01045 ispH 4-hydroxy-3-meth 51.5 95 0.0021 25.4 7.4 99 81-181 166-281 (298)
258 cd03033 ArsC_15kD Arsenate Red 50.3 21 0.00046 24.6 3.1 34 101-140 2-35 (113)
259 cd03051 GST_N_GTT2_like GST_N 48.6 16 0.00036 22.0 2.1 31 103-137 3-33 (74)
260 cd00570 GST_N_family Glutathio 46.6 17 0.00036 21.1 1.9 34 103-140 3-36 (71)
261 COG0821 gcpE 1-hydroxy-2-methy 43.9 61 0.0013 27.0 5.1 80 96-181 253-349 (361)
262 cd03041 GST_N_2GST_N GST_N fam 43.7 21 0.00046 22.2 2.1 21 102-122 3-23 (77)
263 cd03059 GST_N_SspA GST_N famil 43.2 25 0.00055 21.2 2.4 35 102-140 2-36 (73)
264 cd02974 AhpF_NTD_N Alkyl hydro 40.6 1.1E+02 0.0023 20.3 10.0 84 84-182 8-93 (94)
265 cd03037 GST_N_GRX2 GST_N famil 39.4 26 0.00057 21.2 2.0 20 103-122 3-22 (71)
266 KOG1422 Intracellular Cl- chan 38.9 1.6E+02 0.0035 22.9 6.4 33 108-144 20-52 (221)
267 PF14421 LmjF365940-deam: A di 38.2 49 0.0011 25.0 3.5 29 109-141 157-185 (193)
268 PRK10026 arsenate reductase; P 37.1 58 0.0013 23.5 3.7 34 101-140 4-37 (141)
269 PRK12360 4-hydroxy-3-methylbut 37.1 2.3E+02 0.0049 23.0 7.6 97 81-181 167-280 (281)
270 PF07689 KaiB: KaiB domain; I 35.7 85 0.0018 20.4 4.0 47 104-151 3-50 (82)
271 TIGR00014 arsC arsenate reduct 34.8 57 0.0012 22.3 3.3 33 102-140 2-34 (114)
272 COG1393 ArsC Arsenate reductas 33.6 53 0.0011 22.8 2.9 21 101-121 3-23 (117)
273 PF09695 YtfJ_HI0045: Bacteria 33.3 88 0.0019 23.1 4.1 25 152-180 131-155 (160)
274 KOG0855 Alkyl hydroperoxide re 32.8 2.2E+02 0.0047 21.5 6.4 45 96-140 89-135 (211)
275 cd03045 GST_N_Delta_Epsilon GS 32.4 39 0.00084 20.5 2.0 32 103-138 3-34 (74)
276 TIGR00216 ispH_lytB (E)-4-hydr 32.1 2.1E+02 0.0045 23.2 6.5 99 81-181 164-279 (280)
277 TIGR02174 CXXU_selWTH selT/sel 31.9 36 0.00078 21.3 1.7 17 108-125 5-21 (72)
278 TIGR01764 excise DNA binding d 31.1 32 0.0007 18.8 1.3 37 144-181 7-49 (49)
279 COG4604 CeuD ABC-type enteroch 29.3 2.4E+02 0.0053 22.1 6.0 54 109-167 168-221 (252)
280 TIGR00612 ispG_gcpE 1-hydroxy- 29.2 61 0.0013 27.0 3.0 61 105-165 261-335 (346)
281 cd03034 ArsC_ArsC Arsenate Red 28.9 59 0.0013 22.1 2.5 33 102-140 2-34 (112)
282 cd03070 PDI_b_ERp44 PDIb famil 27.1 1.9E+02 0.0042 19.1 4.7 51 78-136 2-52 (91)
283 KOG0852 Alkyl hydroperoxide re 26.7 2.9E+02 0.0062 21.0 8.0 44 95-138 31-76 (196)
284 PF03960 ArsC: ArsC family; I 26.4 1.4E+02 0.003 20.0 4.1 40 104-149 1-46 (110)
285 PF09822 ABC_transp_aux: ABC-t 26.0 3.3E+02 0.0071 21.4 11.1 57 95-151 22-87 (271)
286 COG5494 Predicted thioredoxin/ 25.7 3.3E+02 0.0072 21.3 6.5 67 103-180 15-85 (265)
287 PRK11865 pyruvate ferredoxin o 24.7 3.9E+02 0.0085 21.9 6.9 60 77-138 181-244 (299)
288 KOG2244 Highly conserved prote 24.7 45 0.00097 29.8 1.6 56 83-142 102-160 (786)
289 COG0278 Glutaredoxin-related p 24.5 2.4E+02 0.0051 19.3 6.3 68 85-167 7-86 (105)
290 cd07973 Spt4 Transcription elo 24.5 91 0.002 21.0 2.7 61 104-168 18-85 (98)
291 PF07700 HNOB: Heme NO binding 23.5 1.9E+02 0.004 21.2 4.6 43 96-138 126-169 (171)
292 PRK10853 putative reductase; P 22.3 1E+02 0.0023 21.3 2.8 34 101-140 2-35 (118)
293 PF01216 Calsequestrin: Calseq 21.8 5E+02 0.011 22.0 9.5 92 77-182 148-246 (383)
294 PF07315 DUF1462: Protein of u 21.8 2.6E+02 0.0056 18.7 6.1 60 107-168 7-85 (93)
295 TIGR02652 conserved hypothetic 21.7 35 0.00076 24.6 0.3 12 108-119 11-22 (163)
296 COG2077 Tpx Peroxiredoxin [Pos 21.7 3.4E+02 0.0073 20.0 6.9 42 96-138 44-85 (158)
297 PF09654 DUF2396: Protein of u 21.5 35 0.00075 24.6 0.2 12 108-119 8-19 (161)
298 TIGR03759 conj_TIGR03759 integ 21.4 3.8E+02 0.0083 20.6 5.9 59 96-158 107-170 (200)
299 PF10865 DUF2703: Domain of un 21.2 1.1E+02 0.0024 21.4 2.7 56 107-165 13-78 (120)
300 COG3581 Uncharacterized protei 20.9 1E+02 0.0022 26.3 2.9 39 101-139 73-114 (420)
301 KOG0854 Alkyl hydroperoxide re 20.8 2.6E+02 0.0057 21.3 4.7 69 60-140 6-77 (224)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-25 Score=157.49 Aligned_cols=99 Identities=33% Similarity=0.673 Sum_probs=89.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
...+.+.++|++.+. +++.||+|+|||+||+||+.+.|.+++++.+|.++++|+++|+|++++ ++.+|+|+
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPtv 119 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPTV 119 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeEE
Confidence 444667788888876 689999999999999999999999999999999999999999999998 99999999
Q ss_pred -EeeCCeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 152 -IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 152 -~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+|+||+.+++++|..+. +.|+++|++++
T Consensus 120 lvfknGe~~d~~vG~~~~----~~l~~~i~k~l 148 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPK----EQLRSLIKKFL 148 (150)
T ss_pred EEEECCEEeeeecccCCH----HHHHHHHHHHh
Confidence 99999999999999999 77777777764
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=134.57 Aligned_cols=93 Identities=33% Similarity=0.630 Sum_probs=79.4
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCC
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDG 156 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~G 156 (183)
..+++.....+..++++++|+|||+|||||+.+.|.+++|+.+|.+ +.|++||+|+..+ +++.++|. |+++|
T Consensus 7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~-~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEE-VAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHh-HHHhcCceEeeEEEEEECC
Confidence 3444455444435679999999999999999999999999999955 9999999999665 99999999 88999
Q ss_pred eEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 157 EMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 157 k~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+.+.+++|... +++++.|+++
T Consensus 85 ~~~~~~vGa~~-----~~l~~~i~~~ 105 (106)
T KOG0907|consen 85 EEVDEVVGANK-----AELEKKIAKH 105 (106)
T ss_pred EEEEEEecCCH-----HHHHHHHHhc
Confidence 99999999988 5888887765
No 3
>PHA02278 thioredoxin-like protein
Probab=99.87 E-value=3.4e-21 Score=132.56 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=78.4
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh---HHHHHhcCeE------
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS------ 151 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~i~------ 151 (183)
++.++|.+.+ +.+++++|+|||+|||||+.+.|.++++++++..++.|+++|+|.++ ..++++|+|.
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4567888888 58999999999999999999999999999887566889999999863 3499999999
Q ss_pred EeeCCeEEEEEecCcchhhHHHHHHHH
Q 030114 152 IWKDGEMKSEVIGGHKAWLVIEEVREM 178 (183)
Q Consensus 152 ~~~~Gk~v~~~~G~~~~~~~~~~l~~~ 178 (183)
+|+||+.+.++.|..+. ++|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~----~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTP----MQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCH----HHHHhh
Confidence 99999999999998887 666554
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=8.7e-22 Score=137.04 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=74.5
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCC
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDG 156 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~G 156 (183)
.++|++.+.. +.++++||+|||+|||||+.+.|.|+++++++.+.+.|++||+|++++ ++++|+|+ +|++|
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECC
Confidence 4678888842 268899999999999999999999999999997778999999999998 99999999 99999
Q ss_pred eEEEEEecCcch
Q 030114 157 EMKSEVIGGHKA 168 (183)
Q Consensus 157 k~v~~~~G~~~~ 168 (183)
+.+.+..|..+.
T Consensus 79 ~~v~~~~G~~~~ 90 (114)
T cd02954 79 KHMKIDLGTGNN 90 (114)
T ss_pred EEEEEEcCCCCC
Confidence 999999997664
No 5
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.85 E-value=7.6e-21 Score=137.09 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=78.0
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+..+.+.++|++++.. ..+++|+|+|||+||+||+.+.|.|+++++++.+.+.|++||+|++++ ++++|+|+
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCcE
Confidence 4567889999999964 368899999999999999999999999999997779999999999998 99999999
Q ss_pred --EeeCCe-EEEEEecC
Q 030114 152 --IWKDGE-MKSEVIGG 165 (183)
Q Consensus 152 --~~~~Gk-~v~~~~G~ 165 (183)
||++|+ .+.+..|.
T Consensus 82 ~~ffk~g~~~vd~~tG~ 98 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGN 98 (142)
T ss_pred EEEEECCeEEEEEeccc
Confidence 889999 89999993
No 6
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.3e-21 Score=151.27 Aligned_cols=100 Identities=26% Similarity=0.562 Sum_probs=90.6
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+.+++ ..+|.+.+..+ +..+||+|+||+|||+||+.+.|.+++++.+|++++++++||+|+++. ++..|+|+
T Consensus 25 I~dvT-~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVT-EANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV 101 (304)
T ss_pred ceech-HhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence 66676 55677777665 567799999999999999999999999999999999999999999998 99999999
Q ss_pred -EeeCCeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 152 -IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 152 -~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
.|++|++++-+.|..+. +.|++||++++
T Consensus 102 ~af~dGqpVdgF~G~qPe----sqlr~~ld~~~ 130 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPE----SQLRQFLDKVL 130 (304)
T ss_pred EEeeCCcCccccCCCCcH----HHHHHHHHHhc
Confidence 89999999999999998 89999998864
No 7
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.84 E-value=3.3e-20 Score=127.52 Aligned_cols=92 Identities=20% Similarity=0.413 Sum_probs=81.8
Q ss_pred ecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEEcCCChHHHHHhcCeE------
Q 030114 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNIS------ 151 (183)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~~~~~~~~~~~i~------ 151 (183)
.+.+.++|++++ +.+++++|+|||+||++|+.+.|.|++++++++++ +.|+.+|+| .++ ++++|+|+
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~~~~v~~~Pt~~ 76 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLKRYRGKCEPTFL 76 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHHHcCCCcCcEEE
Confidence 477899999998 67899999999999999999999999999999754 899999999 665 89999999
Q ss_pred EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 ~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++++|+.+.++.|... +.|.++|++
T Consensus 77 ~~~~g~~~~~~~G~~~-----~~~~~~i~~ 101 (102)
T cd02948 77 FYKNGELVAVIRGANA-----PLLNKTITE 101 (102)
T ss_pred EEECCEEEEEEecCCh-----HHHHHHHhh
Confidence 8899999999999744 788888865
No 8
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.84 E-value=3.9e-20 Score=127.37 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=79.5
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh--HHHHHhcCeE------Ee
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--KDLVKRGNIS------IW 153 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~--~~~~~~~~i~------~~ 153 (183)
+.++|++.+.. ..+++++|+|||+||++|+.+.|.|+++++++ +++.|+.||+|+++ ..++++|+|+ ++
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 56788899854 25899999999999999999999999999999 78999999999885 2499999999 88
Q ss_pred eCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 154 KDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++|+++.++.|..+ ++|.+.+..
T Consensus 79 ~~G~~v~~~~G~~~-----~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGIGP-----DELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCCCH-----HHHHHHHHh
Confidence 99999999999877 566666543
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=1.8e-19 Score=122.98 Aligned_cols=93 Identities=30% Similarity=0.598 Sum_probs=85.6
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeC
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKD 155 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~ 155 (183)
+.++|++.+. +.+++++|.||++||++|+.+.|.|+++++.+.+++.|+.||+++++. ++++|+|. ++++
T Consensus 5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEEEEEET
T ss_pred CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEEEEEEC
Confidence 5778999993 238999999999999999999999999999997799999999999987 99999999 8899
Q ss_pred CeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 156 GEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 156 Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
|+.+.++.|..+. +.|.++|++|
T Consensus 81 g~~~~~~~g~~~~----~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNA----ESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSH----HHHHHHHHHH
T ss_pred CcEEEEEECCCCH----HHHHHHHHcC
Confidence 9999999999888 9999999876
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.83 E-value=1.2e-19 Score=126.84 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=80.1
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHH-HhcCeE----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLV-KRGNIS---- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~-~~~~i~---- 151 (183)
+.+++ .++|++++.-. +++++++|+||||||++|+.+.|.++++++++++.+.|++||++++++ ++ ++|+|.
T Consensus 11 v~~l~-~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PT 87 (113)
T cd03006 11 VLDFY-KGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPV 87 (113)
T ss_pred eEEec-hhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCE
Confidence 55564 55777762100 589999999999999999999999999999998789999999999987 77 689988
Q ss_pred --EeeCCeEEEEEecCcchhhHHHHHHHH
Q 030114 152 --IWKDGEMKSEVIGGHKAWLVIEEVREM 178 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~~~~~~~l~~~ 178 (183)
+|++|+...++.|..+. +.|..+
T Consensus 88 l~lf~~g~~~~~y~G~~~~----~~i~~~ 112 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRA----PYMEKF 112 (113)
T ss_pred EEEEECCccceEEeCCCCH----HHHHhh
Confidence 88999998999999988 776654
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.82 E-value=2.1e-19 Score=121.73 Aligned_cols=89 Identities=20% Similarity=0.410 Sum_probs=78.8
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCCeE
Q 030114 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDGEM 158 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~ 158 (183)
+|++.+.. +.+++++|+|||+||++|+.+.|.++++++.+.+.+.+++||+++.+. ++++|+|. ++++|+.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence 56777743 347899999999999999999999999999997789999999999988 99999999 7899999
Q ss_pred EEEEecCcchhhHHHHHHHHHH
Q 030114 159 KSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 159 v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+.++.|..+. ++|.++|+
T Consensus 79 ~~~~~g~~~~----~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPE----EQLRQMLD 96 (96)
T ss_pred eeeecCCCCH----HHHHHHhC
Confidence 9999999887 78887764
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.82 E-value=1e-19 Score=124.57 Aligned_cols=92 Identities=15% Similarity=0.359 Sum_probs=81.4
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+.++ +.++|++.+ ..+++++|.|||+||++|+.+.|.|+++++.+++.+.|++||+++++. ++++++|+
T Consensus 3 ~~~l-~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 76 (101)
T cd03003 3 IVTL-DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSL 76 (101)
T ss_pred eEEc-CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEE
Confidence 3445 467899988 577999999999999999999999999999998889999999999987 99999998
Q ss_pred -EeeCCeEEEEEecCcchhhHHHHHHHH
Q 030114 152 -IWKDGEMKSEVIGGHKAWLVIEEVREM 178 (183)
Q Consensus 152 -~~~~Gk~v~~~~G~~~~~~~~~~l~~~ 178 (183)
+|++|+.+.++.|..+. +.|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~----~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSK----ESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCH----HHHHhh
Confidence 88999999999999887 666654
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.81 E-value=2.5e-19 Score=126.22 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=84.3
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChh--hh--hhhHHHHHHHHHh--cCCeEEEEEEcCCChHHHHHhcCe
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNI 150 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~--C~--~~~p~l~~la~~~--~~~v~~~~vd~d~~~~~~~~~~~i 150 (183)
+..+ +.++|++.+. +++.++|++||++||+| |+ .+.|.+.+++.++ .+++.|++||+|++++ ++++|+|
T Consensus 11 v~~l-t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I 85 (120)
T cd03065 11 VIDL-NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGL 85 (120)
T ss_pred eeeC-ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCC
Confidence 3444 4688999885 56779999999999988 99 8899999999998 7889999999999998 9999999
Q ss_pred E------EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 151 S------IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 151 ~------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+ +|+||+++. +.|..++ +.|.++|++.
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~----~~l~~~l~~~ 118 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAA----DTLVEFLLDL 118 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCH----HHHHHHHHHH
Confidence 9 999999887 9999998 7888888765
No 14
>PRK09381 trxA thioredoxin; Provisional
Probab=99.81 E-value=5.7e-19 Score=122.46 Aligned_cols=99 Identities=23% Similarity=0.538 Sum_probs=86.4
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
.++++++ ++|.+.+. +.+++++|+||++||++|+.+.|.|+++++.+++++.++.+|++..+. ++++|+|+
T Consensus 4 ~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt 78 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPT 78 (109)
T ss_pred cceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCE
Confidence 4666754 67776553 568899999999999999999999999999998889999999999987 89999999
Q ss_pred --EeeCCeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 152 --IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
++++|+++.++.|..+. ++|+++|+.++
T Consensus 79 ~~~~~~G~~~~~~~G~~~~----~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGALSK----GQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCCCH----HHHHHHHHHhc
Confidence 78999999999999887 78888888764
No 15
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.81 E-value=6.2e-19 Score=123.43 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=84.5
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
.+.+|++.++|.+.+ .++++++|+||++||++|+.+.|.++++++++ +++.|++||+++.++ ++++|+|.
T Consensus 5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt 78 (113)
T cd02989 5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT 78 (113)
T ss_pred CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence 467788889999999 57899999999999999999999999999998 679999999999998 99999999
Q ss_pred --EeeCCeEEEEEecCcch----hhHHHHHHHHH
Q 030114 152 --IWKDGEMKSEVIGGHKA----WLVIEEVREMI 179 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~----~~~~~~l~~~i 179 (183)
+|++|++++++.|..+. ....+.++.++
T Consensus 79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999999988653 22444555443
No 16
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=3.1e-19 Score=122.73 Aligned_cols=93 Identities=28% Similarity=0.525 Sum_probs=80.6
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------ 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------ 151 (183)
.++ +.++|++.+. +.+++++|+|||+||++|+.+.|.++++++++.+.+.|++||++++++ ++++++|+
T Consensus 4 ~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~~ 78 (104)
T cd03004 4 ITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTIR 78 (104)
T ss_pred eEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEEE
Confidence 345 4678888874 457799999999999999999999999999997789999999999987 99999998
Q ss_pred EeeCC-eEEEEEecCcc-hhhHHHHHHHHH
Q 030114 152 IWKDG-EMKSEVIGGHK-AWLVIEEVREMI 179 (183)
Q Consensus 152 ~~~~G-k~v~~~~G~~~-~~~~~~~l~~~i 179 (183)
+|++| +.+.++.|..+ . ++|.+||
T Consensus 79 ~~~~g~~~~~~~~G~~~~~----~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDA----DSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCH----HHHHhhC
Confidence 77887 88999999876 6 7777664
No 17
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=9.1e-19 Score=126.87 Aligned_cols=93 Identities=27% Similarity=0.513 Sum_probs=85.5
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeC
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKD 155 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~ 155 (183)
+.++|++++ +.+++++|+||++||++|+.+.|.|+++++++.+++.|+++|+++.++ ++++|+|. +|++
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEEC
Confidence 567898888 578999999999999999999999999999997889999999999988 99999999 8899
Q ss_pred CeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 156 GEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 156 Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
|+++.++.|..+. +.|+++|++++
T Consensus 116 G~~v~~~~G~~~~----e~l~~~l~~~~ 139 (139)
T PRK10996 116 GQVVDMLNGAVPK----APFDSWLNEAL 139 (139)
T ss_pred CEEEEEEcCCCCH----HHHHHHHHHhC
Confidence 9999999999888 88999998764
No 18
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=5.1e-19 Score=123.44 Aligned_cols=95 Identities=15% Similarity=0.345 Sum_probs=81.0
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE------Eee
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS------IWK 154 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~------~~~ 154 (183)
+.++|.+.+... +.+++++|+||||||++|+.+.|.++++++++.+ ++.+++||++..+. ++++++|. +++
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGII 87 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEE
Confidence 355666544211 3689999999999999999999999999999965 59999999999987 89999999 789
Q ss_pred CCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 155 DGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 155 ~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|+.+.++.|..+. +.|.++|++.
T Consensus 88 ~g~~~~~~~G~~~~----~~l~~~i~~~ 111 (111)
T cd02963 88 NGQVTFYHDSSFTK----QHVVDFVRKL 111 (111)
T ss_pred CCEEEEEecCCCCH----HHHHHHHhcC
Confidence 99999999999887 8899988763
No 19
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.78 E-value=1.7e-18 Score=118.61 Aligned_cols=78 Identities=13% Similarity=0.323 Sum_probs=70.1
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC-CChHHHHHhcCeE------EeeCCeEEEEEecCcc
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGNIS------IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~~~~~~~~i~------~~~~Gk~v~~~~G~~~ 167 (183)
.++++++|+|||+||++|+.+.|.|+++++++ +++.++.||.+ ..+. ++++|+|. +|++| .+.++.|..+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~-l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPS-LLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHH-HHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 58999999999999999999999999999999 56889999998 6776 99999999 78888 8899999988
Q ss_pred hhhHHHHHHHHH
Q 030114 168 AWLVIEEVREMI 179 (183)
Q Consensus 168 ~~~~~~~l~~~i 179 (183)
. +.|.+||
T Consensus 93 ~----~~l~~f~ 100 (100)
T cd02999 93 L----DSLAAFY 100 (100)
T ss_pred H----HHHHhhC
Confidence 8 7777764
No 20
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.3e-19 Score=134.71 Aligned_cols=98 Identities=20% Similarity=0.459 Sum_probs=88.7
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
.+..|.+..+|+..+..+ +.+.++|+|+|+|||||+...|.|..++.+| ++..|++||+|++.. .+..+||.
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCce
Confidence 467789999999999664 7899999999999999999999999999999 889999999999988 89999998
Q ss_pred --EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 --IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|+||+.++++.|... ..|++.+.+|
T Consensus 78 Fiff~ng~kid~~qGAd~-----~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGADA-----SGLEEKVAKY 105 (288)
T ss_pred EEEEecCeEeeeecCCCH-----HHHHHHHHHH
Confidence 8899999999999977 5777777765
No 21
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.77 E-value=1.7e-18 Score=121.16 Aligned_cols=99 Identities=21% Similarity=0.418 Sum_probs=80.1
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
.+.++++ ++|.+.+..+ +.+++++|+||+|||++|+.+.|.++++++++ +++.|++||++++ . ++++|+|+
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~-l~~~~~i~~~Pt 79 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-F-LVNYLDIKVLPT 79 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-H-HHHhcCCCcCCE
Confidence 3566776 7898888422 12489999999999999999999999999999 6799999999988 5 99999998
Q ss_pred --EeeCCeEEEEEecCcch---hhHHHHHHHHH
Q 030114 152 --IWKDGEMKSEVIGGHKA---WLVIEEVREMI 179 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~---~~~~~~l~~~i 179 (183)
+|++|++++++.|..+. ....+.|++++
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 89999999999986542 33445555443
No 22
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.77 E-value=8.4e-18 Score=114.95 Aligned_cols=92 Identities=24% Similarity=0.409 Sum_probs=78.4
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
+.+++ .++|++++ .++ ++|+|||+||++|+.+.|.|+++++.+++ ++.++++|+++++. ++++|+|.
T Consensus 3 v~~l~-~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt 74 (101)
T cd02994 3 VVELT-DSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT 74 (101)
T ss_pred eEEcC-hhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence 45564 67899887 233 89999999999999999999999998754 69999999999987 99999999
Q ss_pred --EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 --IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++++|+. .++.|..+. ++|.++|++
T Consensus 75 ~~~~~~g~~-~~~~G~~~~----~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF-RRYQGPRDK----EDLISFIEE 101 (101)
T ss_pred EEEeCCCCE-EEecCCCCH----HHHHHHHhC
Confidence 7789984 789999887 888888864
No 23
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=4.9e-18 Score=117.67 Aligned_cols=93 Identities=30% Similarity=0.566 Sum_probs=78.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc------CCeEEEEEEcCCChHHHHHhcCe
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD------TKLKFYYVDVNKVSKDLVKRGNI 150 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~------~~v~~~~vd~d~~~~~~~~~~~i 150 (183)
+.+++ .++|++.+ ..+++++|+||||||++|+.+.|.++++++.++ +++.+++||++++++ ++++|+|
T Consensus 3 v~~l~-~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v 76 (108)
T cd02996 3 IVSLT-SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRI 76 (108)
T ss_pred eEEcC-HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCC
Confidence 44554 67899988 578899999999999999999999999998753 258999999999987 9999999
Q ss_pred E------EeeCCe-EEEEEecCcchhhHHHHHHHHH
Q 030114 151 S------IWKDGE-MKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 151 ~------~~~~Gk-~v~~~~G~~~~~~~~~~l~~~i 179 (183)
+ +|++|+ ...++.|..+. +.|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g~~~~----~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRGQRSV----EALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCCCCCH----HHHHhhC
Confidence 9 889999 45788898887 7777764
No 24
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.77 E-value=6.4e-18 Score=122.86 Aligned_cols=92 Identities=18% Similarity=0.464 Sum_probs=76.9
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh-HHHHHhcCeE------Ee-e
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS------IW-K 154 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~~~~~~~~i~------~~-~ 154 (183)
..+|++++ ..++++||+|||+||++|+.+.|.|+++++++++++.|+.||++... ..++++|+|. |+ +
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 45677777 68999999999999999999999999999999777899999988653 2389999998 55 5
Q ss_pred CCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 155 DGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 155 ~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|+++.++.|..+. ++|+++|+++
T Consensus 86 ~G~~v~~~~G~~~~----~~l~~~l~~l 109 (142)
T cd02950 86 EGNEEGQSIGLQPK----QVLAQNLDAL 109 (142)
T ss_pred CCCEEEEEeCCCCH----HHHHHHHHHH
Confidence 89999999999988 5565555543
No 25
>PTZ00051 thioredoxin; Provisional
Probab=99.76 E-value=7.7e-18 Score=114.38 Aligned_cols=90 Identities=24% Similarity=0.628 Sum_probs=80.4
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+.++++.+++.+++ +.+++++|+||++||++|+.+.|.++++++++ +++.|+.+|+++... ++++|+|.
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence 45788889999998 67899999999999999999999999999988 579999999999887 99999999
Q ss_pred -EeeCCeEEEEEecCcchhhHHHHHHH
Q 030114 152 -IWKDGEMKSEVIGGHKAWLVIEEVRE 177 (183)
Q Consensus 152 -~~~~Gk~v~~~~G~~~~~~~~~~l~~ 177 (183)
++++|+++.++.|... ++|++
T Consensus 76 ~~~~~g~~~~~~~G~~~-----~~~~~ 97 (98)
T PTZ00051 76 KVFKNGSVVDTLLGAND-----EALKQ 97 (98)
T ss_pred EEEeCCeEEEEEeCCCH-----HHhhc
Confidence 8899999999999865 56653
No 26
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=6.2e-18 Score=115.46 Aligned_cols=91 Identities=24% Similarity=0.525 Sum_probs=78.3
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCChHHHHHhcCeE---
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
.+++ .++|++.+ ..+ +++|+|||+||++|+.+.|.++++++++++ ++.++.+|+++.+. ++++|+|.
T Consensus 3 ~~l~-~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P 75 (102)
T cd03005 3 LELT-EDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYP 75 (102)
T ss_pred eECC-HHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCC
Confidence 3454 56799998 343 699999999999999999999999999865 69999999999987 99999998
Q ss_pred ---EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 ---IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ---~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++++|+++.++.|..+. ++|.++|
T Consensus 76 t~~~~~~g~~~~~~~G~~~~----~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDL----DSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCH----HHHHhhC
Confidence 78999999999999987 6776654
No 27
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.76 E-value=9.6e-18 Score=113.65 Aligned_cols=90 Identities=17% Similarity=0.444 Sum_probs=78.5
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeC
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKD 155 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~ 155 (183)
+.++|++++..+ .+++++|+||++||++|+.+.|.|+++++++.+++.++++|+++.++ ++++|+|+ +|++
T Consensus 1 s~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEEEEEEC
Confidence 356788888542 26999999999999999999999999999975789999999999988 99999999 8899
Q ss_pred CeEEEEEecCcchhhHHHHHHHHH
Q 030114 156 GEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 156 Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
|+++.++.|..+ ++|.+.|
T Consensus 78 g~~~~~~~g~~~-----~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADP-----KELAKKV 96 (97)
T ss_pred CEEEEEEeCCCH-----HHHHHhh
Confidence 999999999876 5777665
No 28
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.76 E-value=1e-17 Score=125.70 Aligned_cols=105 Identities=12% Similarity=0.226 Sum_probs=87.5
Q ss_pred ccceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--
Q 030114 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
...+.+|++.++|.+.+..+ ..+.+|||+||++||++|+.+.|.|++++++| +.++|++||+++. . ++.+|+|.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~-~-l~~~f~v~~v 136 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT-G-ASDEFDTDAL 136 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch-h-hHHhCCCCCC
Confidence 45677888768888888532 23359999999999999999999999999999 6899999999987 4 89999998
Q ss_pred ----EeeCCeEEEEEecCcc---hhhHHHHHHHHHHhh
Q 030114 152 ----IWKDGEMKSEVIGGHK---AWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ----~~~~Gk~v~~~~G~~~---~~~~~~~l~~~i~~~ 182 (183)
+|++|+.+.+++|... ..+..+.|+.+|.++
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999999999998865 255667788777653
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.76 E-value=1.1e-17 Score=115.82 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=78.6
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------Ee
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~w--C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~ 153 (183)
+.++|++.+ ..+.+++|.||++| ||+|+.+.|.|++++++|.+.+.|++||++++++ ++.+|+|+ +|
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTli~f 90 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPALLFF 90 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEEEEE
Confidence 467888888 57899999999997 9999999999999999997789999999999997 99999999 99
Q ss_pred eCCeEEEEEecCcchhhHHHHHH
Q 030114 154 KDGEMKSEVIGGHKAWLVIEEVR 176 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~~~~~~l~ 176 (183)
+||+++.++.|..+. +++.
T Consensus 91 kdGk~v~~~~G~~~~----~e~~ 109 (111)
T cd02965 91 RDGRYVGVLAGIRDW----DEYV 109 (111)
T ss_pred ECCEEEEEEeCccCH----HHHh
Confidence 999999999999887 6553
No 30
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.75 E-value=1.6e-17 Score=115.02 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=66.4
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCC
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDG 156 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~G 156 (183)
.+++++.+..+ .+++|+|+|+|+|||||+.+.|.|+++++++.+.+.|++||+|+.++ ++++|+|+ +|++|
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEEEEEECC
Confidence 45678888653 69999999999999999999999999999994449999999999998 99999998 88999
Q ss_pred eEEE
Q 030114 157 EMKS 160 (183)
Q Consensus 157 k~v~ 160 (183)
+-+.
T Consensus 79 kh~~ 82 (114)
T cd02986 79 QHMK 82 (114)
T ss_pred cEEE
Confidence 8653
No 31
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.75 E-value=3.6e-17 Score=110.99 Aligned_cols=93 Identities=26% Similarity=0.613 Sum_probs=82.4
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCC
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDG 156 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~G 156 (183)
.++|.+.+. ..+++++|.||++||++|+.+.|.++++++.+++++.|+.+|+++.+. ++++|+|. ++++|
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEEEEEeCC
Confidence 567888774 346799999999999999999999999999997789999999999987 89999999 77999
Q ss_pred eEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 157 EMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 157 k~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+.++++.|..+. ++|.++|++.+
T Consensus 79 ~~~~~~~g~~~~----~~l~~~l~~~~ 101 (101)
T TIGR01068 79 KEVDRSVGALPK----AALKQLINKNL 101 (101)
T ss_pred cEeeeecCCCCH----HHHHHHHHhhC
Confidence 999999999887 88888888764
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.74 E-value=5.8e-17 Score=110.24 Aligned_cols=87 Identities=30% Similarity=0.517 Sum_probs=77.2
Q ss_pred HHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCCeEE
Q 030114 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDGEMK 159 (183)
Q Consensus 86 ~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~v 159 (183)
++..+. +.++++++.||++||++|+.+.|.++++++++++++.++.+|+++.++ ++++++|. ++++|+++
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeEE
Confidence 444453 578999999999999999999999999999997789999999999988 89999998 88999999
Q ss_pred EEEecCcchhhHHHHHHHHHH
Q 030114 160 SEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 160 ~~~~G~~~~~~~~~~l~~~i~ 180 (183)
.++.|..+. ++|.++|+
T Consensus 81 ~~~~g~~~~----~~~~~~l~ 97 (97)
T cd02949 81 KEISGVKMK----SEYREFIE 97 (97)
T ss_pred EEEeCCccH----HHHHHhhC
Confidence 999999998 77777763
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=5.2e-17 Score=119.04 Aligned_cols=88 Identities=16% Similarity=0.423 Sum_probs=75.0
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE--
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
..+.+++ .++|++.+.. +.+++|+|+|||+||++|+.+.|.++++++++++ ++.|++||++++++ ++++|+|+
T Consensus 28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~ 103 (152)
T cd02962 28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTS 103 (152)
T ss_pred CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceec
Confidence 3455665 5779888743 3467999999999999999999999999999864 59999999999998 99999983
Q ss_pred ----------EeeCCeEEEEEecCc
Q 030114 152 ----------IWKDGEMKSEVIGGH 166 (183)
Q Consensus 152 ----------~~~~Gk~v~~~~G~~ 166 (183)
+|++|+++.++.|++
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G~~ 128 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPYYN 128 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEeccc
Confidence 899999999999843
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.73 E-value=3.7e-17 Score=111.30 Aligned_cols=93 Identities=26% Similarity=0.514 Sum_probs=82.0
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEEcCCChHHHHHhcCeE------Ee
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNIS------IW 153 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~~~~~~~~i~------~~ 153 (183)
+.++|++.+ ..+++++|.||++||++|+.+.|.++++++.+++ ++.++.+|+++++. ++++|+|. ++
T Consensus 2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTIKFF 76 (102)
T ss_pred chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEEEEe
Confidence 356788888 5789999999999999999999999999999865 69999999999988 99999999 67
Q ss_pred eCCeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 154 KDGEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
++|+.+.++.|..+. ++|..+|++++
T Consensus 77 ~~~~~~~~~~g~~~~----~~l~~~i~~~~ 102 (102)
T TIGR01126 77 PKGKKPVDYEGGRDL----EAIVEFVNEKS 102 (102)
T ss_pred cCCCcceeecCCCCH----HHHHHHHHhcC
Confidence 777767889999887 88999998764
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.73 E-value=5.3e-17 Score=111.08 Aligned_cols=92 Identities=24% Similarity=0.476 Sum_probs=78.6
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEEcCC--ChHHHHHhcCeE--
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK--VSKDLVKRGNIS-- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~--~~~~~~~~~~i~-- 151 (183)
.+++ .++|++.+ +.+++++|+|||+||++|+.+.|.++++++.+. +.+.++.+|++. ++. ++++++|+
T Consensus 3 ~~l~-~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i~~~ 76 (104)
T cd02997 3 VHLT-DEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA-LKEEYNVKGF 76 (104)
T ss_pred EEec-hHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH-HHHhCCCccc
Confidence 3454 55888888 567799999999999999999999999999986 568999999998 666 89999997
Q ss_pred ----EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 ----IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++++|+.+.++.|..+. +.|.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~----~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTA----EDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCH----HHHHhhC
Confidence 88999999999999887 6776653
No 36
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.72 E-value=4.7e-17 Score=112.52 Aligned_cols=92 Identities=20% Similarity=0.463 Sum_probs=77.8
Q ss_pred ecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC--ChHHHHHhcCeE-----
Q 030114 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VSKDLVKRGNIS----- 151 (183)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~~~~~~~~~i~----- 151 (183)
+++ .++|++.+. +.+++++|.|||+||++|+.+.|.++++++.+.+.+.++.+|++. .++ ++++|+|.
T Consensus 4 ~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~Pt~ 78 (109)
T cd03002 4 ELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP-LCGKYGVQGFPTL 78 (109)
T ss_pred Ecc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH-HHHHcCCCcCCEE
Confidence 444 567888885 467889999999999999999999999999997789999999998 665 99999999
Q ss_pred -EeeCCe-----EEEEEecCcchhhHHHHHHHHH
Q 030114 152 -IWKDGE-----MKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 -~~~~Gk-----~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++++|+ ....+.|..+. +.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~----~~l~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSA----KAIVDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCH----HHHHHHh
Confidence 777775 45677888877 7888876
No 37
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=5.8e-17 Score=125.72 Aligned_cols=101 Identities=19% Similarity=0.398 Sum_probs=84.4
Q ss_pred ceEecCCchhHHHHHHHhh-hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---
Q 030114 76 ELEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~-~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
.+.++ +.++|++.+..+. ..+++++|+||||||++|+.+.|.++++++++++.+.|+.+|++++++ ++++|+|+
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~P 108 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYP 108 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCC
Confidence 35556 4778999874321 135899999999999999999999999999998889999999999987 99999999
Q ss_pred ---EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ---IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ---~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|++|+++....|..+. ++|.+|+.+.
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~----e~L~~fi~~~ 138 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRST----EKLAAFALGD 138 (224)
T ss_pred EEEEEECCEEEEeeCCCCCH----HHHHHHHHHH
Confidence 88999998888888887 7777776643
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.71 E-value=4.2e-17 Score=112.17 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=75.1
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCCh---HHHHHhcCeE------
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS------ 151 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~i~------ 151 (183)
+.|.+++ ..+++++|+||++||++|+.+.|.+ .++++.+++++.++.+|+++.. ..++++|+|.
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567777 6889999999999999999999988 6888888668999999998742 2489999998
Q ss_pred Eee--CCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 152 IWK--DGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 152 ~~~--~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+|+ +|+++.++.|..+. ++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~----~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTA----DEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCH----HHHHHHhC
Confidence 666 79999999999998 77777763
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.69 E-value=2.5e-16 Score=108.37 Aligned_cols=88 Identities=18% Similarity=0.415 Sum_probs=73.8
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEEcCCChHHHHHhcCeE------Eee
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNIS------IWK 154 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~~~~~~~~~~i~------~~~ 154 (183)
++|+++. .+++++|.|||+||++|+.+.|.|++++++++ .++.++.+|++..+. ++++|+|. +++
T Consensus 7 ~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEEEEEc
Confidence 5666643 57899999999999999999999999999984 359999999999887 99999999 665
Q ss_pred CCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 155 DGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 155 ~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+| ...++.|..+. ++|.+++++.
T Consensus 81 ~~-~~~~~~G~~~~----~~l~~~~~~~ 103 (104)
T cd03000 81 GD-LAYNYRGPRTK----DDIVEFANRV 103 (104)
T ss_pred CC-CceeecCCCCH----HHHHHHHHhh
Confidence 55 55778898887 8888888764
No 40
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=3e-16 Score=107.25 Aligned_cols=93 Identities=20% Similarity=0.420 Sum_probs=78.1
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------ 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------ 151 (183)
.++ +.++|++.+. +.+++++|.||++||++|+.+.|.|.++++++.+++.++.+|++++++ ++++++|+
T Consensus 3 ~~l-~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~~ 77 (103)
T cd03001 3 VEL-TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTIK 77 (103)
T ss_pred EEc-CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEEE
Confidence 345 4567888774 356679999999999999999999999999997889999999999987 99999999
Q ss_pred EeeCC-eEEEEEecCcchhhHHHHHHHHH
Q 030114 152 IWKDG-EMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ~~~~G-k~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++.+| +....+.|..+. ++|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~----~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTA----KAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCH----HHHHHHh
Confidence 77777 456778888887 7777765
No 41
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.67 E-value=8.9e-16 Score=108.97 Aligned_cols=89 Identities=16% Similarity=0.285 Sum_probs=69.9
Q ss_pred hHHHHHHHhhhCC-CcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEEcCCC------------hHHHHHhc
Q 030114 85 HLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKV------------SKDLVKRG 148 (183)
Q Consensus 85 ~~~~~l~~a~~~~-k~vlv~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~------------~~~~~~~~ 148 (183)
++.++. ..+ ++++|+|||+||++|+.+.|.+. ++.+.+++++.++.+|++.. ...++.+|
T Consensus 5 ~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 5 DLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 444555 678 99999999999999999999884 66666766799999999875 23489999
Q ss_pred CeE------Ee-eC-CeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 149 NIS------IW-KD-GEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 149 ~i~------~~-~~-Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+|. |+ ++ |+++.++.|..+. +.+.++|+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~----~~~~~~l~~ 117 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPP----DEFLAYLEY 117 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCH----HHHHHHHHH
Confidence 988 44 45 6999999999988 555555544
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.67 E-value=1.1e-15 Score=108.24 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=71.9
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh----------HHHHHhcCeE
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNIS 151 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----------~~~~~~~~i~ 151 (183)
+.+++.+.+ .+++.++|+|+++|||+|+.+.|.|.+++++ .++.++.||++..+ ..+.++|++.
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 466788888 6889999999999999999999999999998 45778999988543 1255676643
Q ss_pred ----------EeeCCeEEEEEecCc-chhhHHHHHHHHHH
Q 030114 152 ----------IWKDGEMKSEVIGGH-KAWLVIEEVREMIK 180 (183)
Q Consensus 152 ----------~~~~Gk~v~~~~G~~-~~~~~~~~l~~~i~ 180 (183)
++++|+++.++.|.. +. ++|..|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~----~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTA----QELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCH----HHHHHHhh
Confidence 889999999999953 45 78887764
No 43
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.67 E-value=6.8e-16 Score=107.98 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=70.5
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCCeEEE--EEecCc
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDGEMKS--EVIGGH 166 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~v~--~~~G~~ 166 (183)
..+..++|.||++||++|+.+.|.++++++.+ +++.+..+|+++.++ ++++|+|. ++++|+... ++.|..
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 56778999999999999999999999999988 789999999999987 99999998 777765443 788988
Q ss_pred chhhHHHHHHHHHHhh
Q 030114 167 KAWLVIEEVREMIKKF 182 (183)
Q Consensus 167 ~~~~~~~~l~~~i~~~ 182 (183)
+. ++|.++|+..
T Consensus 98 ~~----~el~~~i~~i 109 (113)
T cd02975 98 AG----YEFASLIEDI 109 (113)
T ss_pred ch----HHHHHHHHHH
Confidence 88 6777777654
No 44
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.64 E-value=2.3e-15 Score=104.51 Aligned_cols=97 Identities=11% Similarity=0.278 Sum_probs=73.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHH-hcCeE---
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVK-RGNIS--- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~-~~~i~--- 151 (183)
+.+++ .++|+..+... .++++++|.||++||++|+.+.|.|+++++.+++ ++.++.||++.....++. .++|.
T Consensus 3 v~~~~-~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTLS-RAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred ceecc-HHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 34454 56888877432 4689999999999999999999999999999976 499999999984333675 58887
Q ss_pred ---EeeCC-eEEEEEecC-cchhhHHHHHHHHH
Q 030114 152 ---IWKDG-EMKSEVIGG-HKAWLVIEEVREMI 179 (183)
Q Consensus 152 ---~~~~G-k~v~~~~G~-~~~~~~~~~l~~~i 179 (183)
+|.+| .....+.|. .+. +.|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~----~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDV----DSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCH----HHHHhhC
Confidence 56665 566778884 565 6666653
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=1.6e-15 Score=103.67 Aligned_cols=93 Identities=25% Similarity=0.522 Sum_probs=75.9
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEEcCC-ChHHHHHhcCeE---
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNK-VSKDLVKRGNIS--- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~-~~~~~~~~~~i~--- 151 (183)
.+++ .++|++.+. +.+++++|.||++||++|+.+.|.++++++.++ +++.++.+|++. .+. ++++++|.
T Consensus 3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P 77 (105)
T cd02998 3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFP 77 (105)
T ss_pred EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcC
Confidence 3454 467888773 356699999999999999999999999999986 469999999999 777 99999999
Q ss_pred ---EeeCC-eEEEEEecCcchhhHHHHHHHHH
Q 030114 152 ---IWKDG-EMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ---~~~~G-k~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++.+| +....+.|..+. ++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~----~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDL----EDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCH----HHHHhhC
Confidence 66666 566778888776 7777664
No 46
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=2e-15 Score=103.15 Aligned_cols=92 Identities=18% Similarity=0.435 Sum_probs=74.8
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEEcCCChHHHHHhcCeE----
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
.+++ .++|++.+. +.+++++|+||++||++|+.+.|.++++++.+++ ++.++.+|++++. ++..+++.
T Consensus 3 ~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~~Pt 76 (104)
T cd02995 3 KVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND--VPSEFVVDGFPT 76 (104)
T ss_pred EEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh--hhhhccCCCCCE
Confidence 4454 568888874 4568999999999999999999999999999865 5999999999873 67777766
Q ss_pred --EeeCCe--EEEEEecCcchhhHHHHHHHHH
Q 030114 152 --IWKDGE--MKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 --~~~~Gk--~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++++|+ ...++.|..+. +.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~----~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTL----EDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCH----HHHHhhC
Confidence 788887 56788898776 6776664
No 47
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.63 E-value=2.6e-15 Score=114.16 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=79.7
Q ss_pred ccceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--
Q 030114 74 SVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 74 ~~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
...+.+|+ .++|...+..+ +.+.+|||+||++||++|+.+.|.|++++++| +.++|++||++.. ...|+|.
T Consensus 81 ~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~~----~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQC----IPNYPDKNL 153 (192)
T ss_pred CCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHHh----HhhCCCCCC
Confidence 34567775 55666655432 23469999999999999999999999999999 6799999999853 5678887
Q ss_pred ----EeeCCeEEEEEecCcch---hhHHHHHHHHHHh
Q 030114 152 ----IWKDGEMKSEVIGGHKA---WLVIEEVREMIKK 181 (183)
Q Consensus 152 ----~~~~Gk~v~~~~G~~~~---~~~~~~l~~~i~~ 181 (183)
+|++|+.+.+++|..+- .+..+.|+.+|.+
T Consensus 154 PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 154 PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999997543 4456777777754
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.63 E-value=2.4e-15 Score=101.43 Aligned_cols=87 Identities=28% Similarity=0.533 Sum_probs=75.3
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEEcCCChHHHHHhcCeE------Eee
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKVSKDLVKRGNIS------IWK 154 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d~~~~~~~~~~~i~------~~~ 154 (183)
..+|.+.+ .++++++|.||++||++|+.+.|.+.++++.+ .+++.|+.+|+++++. ++++++|+ ++.
T Consensus 5 ~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 5 DDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTIKLFP 79 (101)
T ss_pred HHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEEEEEc
Confidence 46788888 56679999999999999999999999999998 5789999999999887 99999999 666
Q ss_pred CC-eEEEEEecCcchhhHHHHHHHH
Q 030114 155 DG-EMKSEVIGGHKAWLVIEEVREM 178 (183)
Q Consensus 155 ~G-k~v~~~~G~~~~~~~~~~l~~~ 178 (183)
+| +...++.|..+. ++|.++
T Consensus 80 ~~~~~~~~~~g~~~~----~~i~~~ 100 (101)
T cd02961 80 NGSKEPVKYEGPRTL----ESLVEF 100 (101)
T ss_pred CCCcccccCCCCcCH----HHHHhh
Confidence 66 788888898776 666665
No 49
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.60 E-value=1.6e-14 Score=95.60 Aligned_cols=85 Identities=31% Similarity=0.676 Sum_probs=75.4
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCCeE
Q 030114 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDGEM 158 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~ 158 (183)
+|..++ ..+++++|.||++||++|+.+.|.++++++. .+++.++.+|++..+. +++.+++. ++.+|+.
T Consensus 2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEEEEEECCEE
Confidence 466777 4669999999999999999999999999998 4789999999999887 99999998 7889999
Q ss_pred EEEEecCcchhhHHHHHHHHH
Q 030114 159 KSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 159 v~~~~G~~~~~~~~~~l~~~i 179 (183)
+..+.|..+. +.|..+|
T Consensus 76 ~~~~~g~~~~----~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPK----EELEEFL 92 (93)
T ss_pred EEEEecCCCH----HHHHHHh
Confidence 9999999887 7777776
No 50
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.1e-15 Score=125.08 Aligned_cols=98 Identities=23% Similarity=0.481 Sum_probs=86.1
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCChHHHHHhcCeE
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS 151 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~~~~~~~~i~ 151 (183)
..+..+ +.++|+..+ ..+..++|.||||||++|+.+.|.+++.|..... .+.+++||++++.+ +|.+|+|+
T Consensus 25 ~~Vl~L-t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~-~~~~y~v~ 98 (493)
T KOG0190|consen 25 EDVLVL-TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD-LASKYEVR 98 (493)
T ss_pred cceEEE-ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh-hHhhhcCC
Confidence 345555 477899999 7899999999999999999999999999998753 69999999999976 99999999
Q ss_pred ------EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ------IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|+||+....+.|.+.. +.|..|+.+.
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~a----dgIv~wl~kq 131 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREA----DGIVKWLKKQ 131 (493)
T ss_pred CCCeEEEEecCCcceeccCcccH----HHHHHHHHhc
Confidence 99999987889999998 8888888653
No 51
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.56 E-value=6.7e-15 Score=103.58 Aligned_cols=93 Identities=15% Similarity=0.285 Sum_probs=67.3
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--------Ee-eC
Q 030114 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--------IW-KD 155 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--------~~-~~ 155 (183)
++++++..|+.++++++|+|||+||++|+.+.|.+.+..........|+.||++..++...+.|++. |+ ++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 5778887777899999999999999999999999999877654445677777776653345566553 44 58
Q ss_pred CeEEE---EEecCcchhhHHHHHHH
Q 030114 156 GEMKS---EVIGGHKAWLVIEEVRE 177 (183)
Q Consensus 156 Gk~v~---~~~G~~~~~~~~~~l~~ 177 (183)
|+++. ...|..+...+.+.|..
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHH
Confidence 99877 45566665333333333
No 52
>PTZ00062 glutaredoxin; Provisional
Probab=99.56 E-value=2.6e-14 Score=109.40 Aligned_cols=84 Identities=13% Similarity=0.243 Sum_probs=70.6
Q ss_pred cCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------Ee
Q 030114 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW 153 (183)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~ 153 (183)
..+.+++.+.+. .+...++++|||+||++|+.+.|.+.+++++| +++.|+.||.+ |+|. +|
T Consensus 3 ~~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtfv~~ 69 (204)
T PTZ00062 3 FIKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVFEFY 69 (204)
T ss_pred CCCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEEEEE
Confidence 346778888883 22488999999999999999999999999999 78999999988 7777 88
Q ss_pred eCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 154 KDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++|+++.|+.|..+ .+|...+.+
T Consensus 70 ~~g~~i~r~~G~~~-----~~~~~~~~~ 92 (204)
T PTZ00062 70 QNSQLINSLEGCNT-----STLVSFIRG 92 (204)
T ss_pred ECCEEEeeeeCCCH-----HHHHHHHHH
Confidence 99999999999987 456555544
No 53
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.55 E-value=4.4e-14 Score=119.99 Aligned_cols=95 Identities=27% Similarity=0.527 Sum_probs=82.1
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCChHHHHHhcCeE---
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
..+ +.++|+.++ ..+++++|.|||+||++|+.+.|.+.++++.+.+ ++.|+.||+++.++ ++++++|.
T Consensus 4 ~~l-~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~P 77 (462)
T TIGR01130 4 LVL-TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYP 77 (462)
T ss_pred eEC-CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCcccc
Confidence 344 467899998 5788999999999999999999999999988743 49999999999987 99999998
Q ss_pred ---EeeCCeE-EEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ---IWKDGEM-KSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ---~~~~Gk~-v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++|+. +.++.|..+. +.|.+|+.+.
T Consensus 78 t~~~~~~g~~~~~~~~g~~~~----~~l~~~i~~~ 108 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGPRDA----DGIVKYMKKQ 108 (462)
T ss_pred EEEEEeCCccceeEecCCCCH----HHHHHHHHHh
Confidence 8899987 7889999887 7788777654
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.54 E-value=5.3e-14 Score=119.26 Aligned_cols=100 Identities=10% Similarity=0.190 Sum_probs=78.4
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEEcCCCh-HHHHHhcCeE--
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDVNKVS-KDLVKRGNIS-- 151 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~d~~~-~~~~~~~~i~-- 151 (183)
.+.+++ .++|+..+... +.+++|||+||||||++|+.+.|.|+++++++++. +.|++||+|.+. ...+++|+|.
T Consensus 352 ~Vv~L~-~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEECC-HHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 345554 66899988422 58999999999999999999999999999999764 999999999874 3244789998
Q ss_pred ----EeeCCeE-EEEEe-cCcchhhHHHHHHHHHHh
Q 030114 152 ----IWKDGEM-KSEVI-GGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 ----~~~~Gk~-v~~~~-G~~~~~~~~~~l~~~i~~ 181 (183)
+|++|.. ...+. |..+. +.|..||+.
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~----e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDV----DSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCH----HHHHHHHHh
Confidence 8888852 33454 46776 888888875
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.54 E-value=6.8e-14 Score=119.73 Aligned_cols=95 Identities=21% Similarity=0.465 Sum_probs=81.7
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEEcCCChHHHHHhcCeE--
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
+..+ +.++|+..+ ..+++++|.|||+||++|+.+.|.++++++.+. +++.++.||++.+.+ ++++|+|.
T Consensus 34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGY 107 (477)
T ss_pred cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcc
Confidence 4445 467899988 578899999999999999999999999998764 469999999999988 99999998
Q ss_pred ----EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ----IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++|+.+ ++.|..+. +.|.++++++
T Consensus 108 Pt~~~~~~g~~~-~y~g~~~~----~~l~~~l~~~ 137 (477)
T PTZ00102 108 PTIKFFNKGNPV-NYSGGRTA----DGIVSWIKKL 137 (477)
T ss_pred cEEEEEECCceE-EecCCCCH----HHHHHHHHHh
Confidence 88899877 89999888 7888887764
No 56
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.53 E-value=6.8e-14 Score=122.26 Aligned_cols=103 Identities=20% Similarity=0.399 Sum_probs=85.3
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCCh---HHHHHhc
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS---KDLVKRG 148 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~---~~~~~~~ 148 (183)
....++.+.+++++.+..++.++|+|+|+|||+||++|+.+.|.+ .++.+++ +++.++++|++++. ..++++|
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHc
Confidence 357788889999999988777889999999999999999999875 6788888 57999999998752 2488999
Q ss_pred CeE------Ee-eCCeE--EEEEecCcchhhHHHHHHHHHHhh
Q 030114 149 NIS------IW-KDGEM--KSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 149 ~i~------~~-~~Gk~--v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++. ++ +||++ +.++.|..+. +++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~----~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDA----AAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCH----HHHHHHHHHh
Confidence 998 44 58988 4788999888 7777777764
No 57
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.53 E-value=1.4e-13 Score=90.27 Aligned_cols=76 Identities=26% Similarity=0.367 Sum_probs=65.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcchhhHHHHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKAWLVIEEVR 176 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~~~~~l~ 176 (183)
+.-||++||++|+.+.|.++++++++++++.++.||+++.++ +++++++. ++.+|+. ++.|..+. ++|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~~~~g~~--~~~G~~~~----~~l~ 75 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAIVINGDV--EFIGAPTK----EELV 75 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEEEECCEE--EEecCCCH----HHHH
Confidence 667999999999999999999999997779999999999987 88999998 5558873 78898887 7888
Q ss_pred HHHHhhC
Q 030114 177 EMIKKFV 183 (183)
Q Consensus 177 ~~i~~~l 183 (183)
++|++.|
T Consensus 76 ~~l~~~~ 82 (82)
T TIGR00411 76 EAIKKRL 82 (82)
T ss_pred HHHHhhC
Confidence 8887654
No 58
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.50 E-value=1.3e-13 Score=94.29 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=70.7
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--------EeeC--CeEEEEEecC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--------IWKD--GEMKSEVIGG 165 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--------~~~~--Gk~v~~~~G~ 165 (183)
.++++++.|+++||++|+.+.|.+++++++|++++.|+.||+++.++ +++.+++. ++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 47899999999999999999999999999998899999999999887 99999996 6677 6554444444
Q ss_pred cchhhHHHHHHHHHHhhC
Q 030114 166 HKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 166 ~~~~~~~~~l~~~i~~~l 183 (183)
.+. +.|.+||++++
T Consensus 90 ~~~----~~l~~fi~~~~ 103 (103)
T cd02982 90 LTA----ESLEEFVEDFL 103 (103)
T ss_pred cCH----HHHHHHHHhhC
Confidence 455 89999998764
No 59
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.50 E-value=1.1e-13 Score=96.96 Aligned_cols=76 Identities=21% Similarity=0.402 Sum_probs=61.8
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEEcCCC-hHHHHHhcCeE--
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKV-SKDLVKRGNIS-- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~-~~~~~~~~~i~-- 151 (183)
.++ +.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++.++ +.+.|+.+|++.. ...++++|+|+
T Consensus 4 ~~l-~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 79 (114)
T cd02992 4 IVL-DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGY 79 (114)
T ss_pred EEC-CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCC
Confidence 344 4678988885 345799999999999999999999999999874 3489999998643 22489999999
Q ss_pred ----EeeCCe
Q 030114 152 ----IWKDGE 157 (183)
Q Consensus 152 ----~~~~Gk 157 (183)
+|++|+
T Consensus 80 Pt~~lf~~~~ 89 (114)
T cd02992 80 PTLRYFPPFS 89 (114)
T ss_pred CEEEEECCCC
Confidence 778877
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.50 E-value=1.2e-13 Score=97.21 Aligned_cols=77 Identities=19% Similarity=0.454 Sum_probs=62.6
Q ss_pred cCCchhHHHHHHHhhhCCCcEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh------HHHHH
Q 030114 80 INDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS------KDLVK 146 (183)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlv~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~------~~~~~ 146 (183)
+.+.++|.+.+.. ..+++++|+||| +||++|+.+.|.++++++++++++.|++||+++.+ ..+..
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 5677888888853 247899999999 99999999999999999999768999999998742 23788
Q ss_pred hcCeE-------EeeCCeE
Q 030114 147 RGNIS-------IWKDGEM 158 (183)
Q Consensus 147 ~~~i~-------~~~~Gk~ 158 (183)
.++|. ++++|+.
T Consensus 84 ~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 84 DPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred ccCcccCCCEEEEEcCCce
Confidence 77764 6666643
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.49 E-value=1.5e-13 Score=117.68 Aligned_cols=97 Identities=18% Similarity=0.382 Sum_probs=80.4
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEEcCCChHHHHHhcCeE---
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
+..+. .++|++.+. +.+++|+|+|||+||++|+.+.|.|+++++.+.+ .+.++.+|++.+.. .++.++++
T Consensus 359 v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~P 433 (477)
T PTZ00102 359 VKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFP 433 (477)
T ss_pred eEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccC
Confidence 44443 677888754 5789999999999999999999999999998854 58999999999876 78889888
Q ss_pred ---EeeCCeEE-EEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ---IWKDGEMK-SEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ---~~~~Gk~v-~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++|+.+ .++.|..+. +.|.++|+++
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~----~~l~~~i~~~ 464 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTV----EGFKEFVNKH 464 (477)
T ss_pred eEEEEECCCcceeEecCcCCH----HHHHHHHHHc
Confidence 77777654 578999888 8888888765
No 62
>PLN02309 5'-adenylylsulfate reductase
Probab=99.49 E-value=3e-13 Score=114.61 Aligned_cols=99 Identities=12% Similarity=0.297 Sum_probs=77.9
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC-CChHHHHH-hcCeE--
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-KVSKDLVK-RGNIS-- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d-~~~~~~~~-~~~i~-- 151 (183)
+.++ +.++|++.+... +.++++||+||||||++|+.+.|.|+++++.+.+ ++.|+++|++ ...+ ++. +|+|.
T Consensus 347 Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~-la~~~~~I~~~ 423 (457)
T PLN02309 347 VVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE-FAKQELQLGSF 423 (457)
T ss_pred cEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH-HHHhhCCCcee
Confidence 4445 466888887433 5789999999999999999999999999999965 4999999999 5555 775 69998
Q ss_pred ----EeeCCeE-EEEEec-CcchhhHHHHHHHHHHhh
Q 030114 152 ----IWKDGEM-KSEVIG-GHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ----~~~~Gk~-v~~~~G-~~~~~~~~~~l~~~i~~~ 182 (183)
+|++|.. ...+.| ..+. +.|..||+..
T Consensus 424 PTil~f~~g~~~~v~Y~~~~R~~----~~L~~fv~~~ 456 (457)
T PLN02309 424 PTILLFPKNSSRPIKYPSEKRDV----DSLLSFVNSL 456 (457)
T ss_pred eEEEEEeCCCCCeeecCCCCcCH----HHHHHHHHHh
Confidence 7877753 344554 5666 8899998764
No 63
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.47 E-value=1.9e-13 Score=95.51 Aligned_cols=88 Identities=11% Similarity=0.163 Sum_probs=69.7
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCeEEEEEEcC-----CChHHHHHhcCeE
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVN-----KVSKDLVKRGNIS 151 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a--~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~d-----~~~~~~~~~~~i~ 151 (183)
+.++|++.+ ..++.+||.||| |||+ +|+.+.|.+.+.+ +.+.+++||++ ++. .++++|+|+
T Consensus 7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~-~L~~~y~I~ 77 (116)
T cd03007 7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNM-ELGERYKLD 77 (116)
T ss_pred ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhH-HHHHHhCCC
Confidence 577899999 688999999999 8898 6666666665544 34999999995 344 499999995
Q ss_pred --------EeeCCe--EEEEEecC-cchhhHHHHHHHHHHhh
Q 030114 152 --------IWKDGE--MKSEVIGG-HKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 --------~~~~Gk--~v~~~~G~-~~~~~~~~~l~~~i~~~ 182 (183)
+|++|+ ....+.|. ++. +.|.+||+++
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~----~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTV----DALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccH----HHHHHHHHhc
Confidence 889885 44678886 887 8899998764
No 64
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=6.9e-13 Score=97.42 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=61.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC------------hHHHHHhc---CeE-------E
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRG---NIS-------I 152 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~------------~~~~~~~~---~i~-------~ 152 (183)
..+++.+|+|||+||++|+.+.|.+++++++|+ +.++.|++|.. .......| ++. +
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 467788999999999999999999999999984 55666666643 22123445 554 6
Q ss_pred eeCCeE-EEEEecCcchhhHHHHHHHHHHhhC
Q 030114 153 WKDGEM-KSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 153 ~~~Gk~-v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+++|+. ...+.|..+. +++++.|++.|
T Consensus 126 D~~G~~i~~~~~G~~s~----~~l~~~I~~ll 153 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDE----AELANRMDEIL 153 (153)
T ss_pred eCCCCEEEEEeecccCH----HHHHHHHHHhC
Confidence 678775 5578999988 77777777654
No 65
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.44 E-value=8e-13 Score=113.48 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=66.4
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEEc----------------------------CCChHHHH
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDV----------------------------NKVSKDLV 145 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~----------------------------d~~~~~~~ 145 (183)
+.+++|||+|||+||++|+.+.|.|++++++++ +++.++.|.. |... .++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHH
Confidence 478999999999999999999999999999986 3577777754 2222 367
Q ss_pred HhcCeE-------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 146 KRGNIS-------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 146 ~~~~i~-------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+.|+|. |+++|+++.++.|..+. ++|+++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~----eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISE----AQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCH----HHHHHHHH
Confidence 778877 66899999999999998 77777776
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.43 E-value=1.4e-12 Score=98.72 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHH----------------------HHHhcCeE--
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD----------------------LVKRGNIS-- 151 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~----------------------~~~~~~i~-- 151 (183)
.+++++|+|||+||++|+.+.|.+.++++ .++.++.|+.++.++. +...|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 68999999999999999999999999865 3588899987655331 22244544
Q ss_pred -----EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 -----IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 -----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++++|++++++.|..+.+.+.+.|+..+++
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999985555555555544
No 67
>PHA02125 thioredoxin-like protein
Probab=99.37 E-value=6.6e-12 Score=81.38 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=51.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---EeeCCeEEEEEecCcc
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---~~~~Gk~v~~~~G~~~ 167 (183)
++.|||+||++|+.+.|.|+++. +.++.||.++.++ ++++|+|. .+.+|+.+.++.|...
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~~~g~~~~~~~G~~~ 64 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTLVNTSTLDRFTGVPR 64 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeEECCEEEEEEeCCCC
Confidence 68999999999999999997653 4688999999887 99999998 3348999999999743
No 68
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.37 E-value=5e-12 Score=94.73 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=61.0
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH----------------------HHHHhcCeE-
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----------------------DLVKRGNIS- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----------------------~~~~~~~i~- 151 (183)
..+++++|+||++||++|+.+.|.++++++. ++.++.|+.+...+ .+.+.|++.
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3689999999999999999999999998753 47888888754321 133445554
Q ss_pred ------EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ------IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++|+++.++.|..+. +++.+.|+++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~----~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNN----EVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCH----HHHHHHHHHH
Confidence 66899999999999988 5555555443
No 69
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.36 E-value=1.5e-12 Score=103.09 Aligned_cols=91 Identities=32% Similarity=0.594 Sum_probs=79.3
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc-----CCeEEEEEEcCCChHHHHHhcCeE------
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-----TKLKFYYVDVNKVSKDLVKRGNIS------ 151 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~-----~~v~~~~vd~d~~~~~~~~~~~i~------ 151 (183)
.++++.++ .....|+|+|||+||+-.+.+.|.|++.++.+. +++..+.|||++... ++.+|.|.
T Consensus 3 ~~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 3 SENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLK 77 (375)
T ss_pred cccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceee
Confidence 45677888 679999999999999999999999999988753 569999999999987 99999999
Q ss_pred EeeCCeEEE-EEecCcchhhHHHHHHHHHHhh
Q 030114 152 IWKDGEMKS-EVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ~~~~Gk~v~-~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|+||.... ++-|.++. +.|.++|++.
T Consensus 78 vfrnG~~~~rEYRg~RsV----eaL~efi~kq 105 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSV----EALIEFIEKQ 105 (375)
T ss_pred eeeccchhhhhhccchhH----HHHHHHHHHH
Confidence 999999876 78899998 7777777664
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.36 E-value=5.7e-12 Score=97.59 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=64.1
Q ss_pred CCcEEEEEeC---CCChhhhhhhHHHHHHHHHhcCCe--EEEEEEcCCChHHHHHhcCeE------EeeCCeEE-EEEec
Q 030114 97 SQPILIDWMA---SWCRKCIYLKPKLEKLAAEFDTKL--KFYYVDVNKVSKDLVKRGNIS------IWKDGEMK-SEVIG 164 (183)
Q Consensus 97 ~k~vlv~F~a---~wC~~C~~~~p~l~~la~~~~~~v--~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~v-~~~~G 164 (183)
+...++.|++ +||++|+.+.|.++++++++ +++ .++.+|.++.++ ++++|+|. +|++|+.+ .++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4444656888 99999999999999999999 554 466666668887 99999999 88999987 59999
Q ss_pred CcchhhHHHHHHHHHHhh
Q 030114 165 GHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 165 ~~~~~~~~~~l~~~i~~~ 182 (183)
..+. +++.++|+.+
T Consensus 97 ~~~~----~~l~~~i~~~ 110 (215)
T TIGR02187 97 IPAG----YEFAALIEDI 110 (215)
T ss_pred cCCH----HHHHHHHHHH
Confidence 9888 6666666543
No 71
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.35 E-value=5e-12 Score=92.04 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=40.9
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------CeEEEEEEcCCCh
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--------KLKFYYVDVNKVS 141 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--------~v~~~~vd~d~~~ 141 (183)
-.+++++|+|||+||+||+.+.|.|.++++++++ ++.++.|+.|...
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 3689999999999999999999999999887643 5899999988653
No 72
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-12 Score=110.87 Aligned_cols=92 Identities=22% Similarity=0.423 Sum_probs=71.8
Q ss_pred CchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEEcCCChHHHHHhcCeE----EeeC
Q 030114 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT--KLKFYYVDVNKVSKDLVKRGNIS----IWKD 155 (183)
Q Consensus 82 ~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~--~v~~~~vd~d~~~~~~~~~~~i~----~~~~ 155 (183)
-..+|++++. ..++-|+|.|||||||||+++.|.+++|++.|++ ++.++++|++.+.- ....+..- +++.
T Consensus 372 Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-~~~~~~~fPTI~~~pa 447 (493)
T KOG0190|consen 372 VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-PSLKVDGFPTILFFPA 447 (493)
T ss_pred eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-ccccccccceEEEecC
Confidence 3567888875 6899999999999999999999999999999975 69999999998853 11122212 7777
Q ss_pred Ce--EEEEEecCcchhhHHHHHHHHHHh
Q 030114 156 GE--MKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 156 Gk--~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
|. .+..+.|.++. +.|..||++
T Consensus 448 g~k~~pv~y~g~R~l----e~~~~fi~~ 471 (493)
T KOG0190|consen 448 GHKSNPVIYNGDRTL----EDLKKFIKK 471 (493)
T ss_pred CCCCCCcccCCCcch----HHHHhhhcc
Confidence 65 34566788777 888888765
No 73
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.35 E-value=1.6e-12 Score=90.10 Aligned_cols=81 Identities=23% Similarity=0.524 Sum_probs=59.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHH---HHHHhcCCeEEEEEEcCCCh-------------------HHHHHhcCeE-
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEK---LAAEFDTKLKFYYVDVNKVS-------------------KDLVKRGNIS- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~---la~~~~~~v~~~~vd~d~~~-------------------~~~~~~~~i~- 151 (183)
.+++++++.||++||++|+.+.+.+.+ +...+++++.++.++++... ..++++++|+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 578999999999999999999999885 44445557889999988643 2488899999
Q ss_pred ----Ee--eCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 ----IW--KDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ----~~--~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
++ .+|+++.++.|..+. ++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~----~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSP----EELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--H----HHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCH----HHHHhhC
Confidence 33 469999999999998 7776654
No 74
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.34 E-value=4.4e-12 Score=107.72 Aligned_cols=95 Identities=20% Similarity=0.433 Sum_probs=76.7
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCChHHHHHhcCeE--
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
+..+ ...+|.+.+. +.+++++|+|||+||++|+.+.|.++++++.+++ ++.|+++|++.+. +.. ++|.
T Consensus 348 v~~l-~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~ 420 (462)
T TIGR01130 348 VKVL-VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGF 420 (462)
T ss_pred cEEe-eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCcccc
Confidence 3344 3667888774 5689999999999999999999999999999976 6999999999875 333 7777
Q ss_pred ----EeeCCeEE--EEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ----IWKDGEMK--SEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ----~~~~Gk~v--~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++|+.. .++.|..+. +.|.++|+++
T Consensus 421 Pt~~~~~~~~~~~~~~~~g~~~~----~~l~~~l~~~ 453 (462)
T TIGR01130 421 PTIKFVPAGKKSEPVPYDGDRTL----EDFSKFIAKH 453 (462)
T ss_pred CEEEEEeCCCCcCceEecCcCCH----HHHHHHHHhc
Confidence 77877653 577888887 8888888765
No 75
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.34 E-value=6e-12 Score=89.27 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=58.2
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH----------------------HHHHhcCeE-
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----------------------DLVKRGNIS- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----------------------~~~~~~~i~- 151 (183)
..+++++|+||++||++|+.+.|.++++++.+ ++.++.|+.+...+ .+++.|++.
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 36899999999999999999999999999886 38888887543211 255667765
Q ss_pred ------EeeCCeEEEEEecCcch
Q 030114 152 ------IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 152 ------~~~~Gk~v~~~~G~~~~ 168 (183)
++++|+++.++.|..++
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred CCeEEEECCCceEEEEEeccCCh
Confidence 66899999999999886
No 76
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.34 E-value=8.5e-12 Score=81.09 Aligned_cols=70 Identities=20% Similarity=0.382 Sum_probs=54.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcchhhHHHHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKAWLVIEEVR 176 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~~~~~l~ 176 (183)
.|+||++||++|+.+.|.+++++++++.++.++.+| ..+ .+.++++. +.-||+.+ +.|..+. .++|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~-~a~~~~v~~vPti~i~G~~~--~~G~~~~---~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMN-EILEAGVTATPGVAVDGELV--IMGKIPS---KEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHH-HHHHcCCCcCCEEEECCEEE--EEeccCC---HHHHH
Confidence 378999999999999999999999997778888877 233 46778888 55599887 7775332 15666
Q ss_pred HHH
Q 030114 177 EMI 179 (183)
Q Consensus 177 ~~i 179 (183)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 77
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.33 E-value=1.3e-11 Score=87.49 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCChHHHHHh--------cCeE-------E
Q 030114 91 LRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLVKR--------GNIS-------I 152 (183)
Q Consensus 91 ~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~~~~~~--------~~i~-------~ 152 (183)
..|+.++|+++|+|+|+||++|+.|.+.. .++++.++.++.++++|.++.++ +++. |++. +
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCCCCEEEEE
Confidence 33347999999999999999999998743 46776665689999999999876 5442 3444 5
Q ss_pred eeCCeEEEEEecC
Q 030114 153 WKDGEMKSEVIGG 165 (183)
Q Consensus 153 ~~~Gk~v~~~~G~ 165 (183)
..+|+++....+.
T Consensus 88 ~~~G~~~~~~~~~ 100 (124)
T cd02955 88 TPDLKPFFGGTYF 100 (124)
T ss_pred CCCCCEEeeeeec
Confidence 5789999877665
No 78
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=3.8e-11 Score=89.39 Aligned_cols=82 Identities=18% Similarity=0.493 Sum_probs=68.2
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh---------------------HHHHHhcCeE--
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------KDLVKRGNIS-- 151 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~---------------------~~~~~~~~i~-- 151 (183)
.+++++|.||++||++|+...|.+.++++++++ ++.++.|+++..+ ..+.+.|++.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 578999999999999999999999999999965 4899999987542 2366778777
Q ss_pred -----EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 -----IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 -----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+.++|+++..+.|..+. +++.+++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~----~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTE----EQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCH----HHHHHHHHH
Confidence 55789999999999988 777777764
No 79
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.30 E-value=5.3e-11 Score=83.12 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=76.3
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCCh-HHHHHhcCeE-------Ee
Q 030114 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS-------IW 153 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~-~~~~~~~~i~-------~~ 153 (183)
+|++++..|+..+|+++|+|+++||++|+.+...+ .++.+.++.++.++.+|++... ..++..|++. +.
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 57888888888999999999999999999998743 5566666667899999998632 2488889888 55
Q ss_pred e-CCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 154 K-DGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 154 ~-~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
. +|+++.++.|..+++.+...|.+.++
T Consensus 85 ~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 6 79999999999999555555555544
No 80
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.29 E-value=3.5e-11 Score=93.22 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=63.9
Q ss_pred CCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCCeEEEEEecCcch
Q 030114 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 96 ~~k~v-lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~v~~~~G~~~~ 168 (183)
..+|+ ++.||++||++|+.+.|.+++++.++ +++.+..+|.++.++ ++++|+|. ++++|+. +.|..+.
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~i~~~~~~---~~G~~~~ 205 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKIVINKGVEE---FVGAYPE 205 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEEEEecCCEE---EECCCCH
Confidence 34554 55599999999999999999999886 789999999999998 99999998 5556643 8899887
Q ss_pred hhHHHHHHHHHHh
Q 030114 169 WLVIEEVREMIKK 181 (183)
Q Consensus 169 ~~~~~~l~~~i~~ 181 (183)
++|.++|++
T Consensus 206 ----~~l~~~l~~ 214 (215)
T TIGR02187 206 ----EQFLEYILS 214 (215)
T ss_pred ----HHHHHHHHh
Confidence 788887764
No 81
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.27 E-value=5.5e-11 Score=91.09 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++++||+|||+||++|+...|.|.+++++|++ ++.++.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 689999999999999999999999999999965 5999999874
No 82
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.26 E-value=2.3e-11 Score=87.03 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=40.4
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCC
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKV 140 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~ 140 (183)
-.+++++|+||++||++|+.+.|.++++++++++ ++.++.|+++..
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 3689999999999999999999999999998864 588888888764
No 83
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=2.4e-11 Score=112.82 Aligned_cols=82 Identities=15% Similarity=0.362 Sum_probs=63.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEEc---CC--Ch---------------------HHHHHhc
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK-LKFYYVDV---NK--VS---------------------KDLVKRG 148 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~---d~--~~---------------------~~~~~~~ 148 (183)
.++++||+|||+||++|+.+.|.|++++++|+++ +.++.|.. |. .. ..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 6899999999999999999999999999999764 88888852 21 11 1245566
Q ss_pred CeE-------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 149 NIS-------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 149 ~i~-------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+|. |.++|+++.++.|.... ++|.++|+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~----~~l~~~l~~ 534 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHR----KDLDDLVEA 534 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCH----HHHHHHHHH
Confidence 666 44799999999998887 555555544
No 84
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.26 E-value=8.1e-12 Score=99.06 Aligned_cols=80 Identities=19% Similarity=0.440 Sum_probs=67.2
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCChHHHHHhcCeE------EeeCCeEEEEEecC
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVSKDLVKRGNIS------IWKDGEMKSEVIGG 165 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~~~~~~~~~i~------~~~~Gk~v~~~~G~ 165 (183)
.....|+|+||||||++|+++.|.|.++.-++++ .+++.++|++..+. ++.+|+|+ ++++|-.+ .+-|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTIk~~kgd~a~-dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTIKFFKGDHAI-DYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceEEEecCCeee-ecCCC
Confidence 4678999999999999999999999999887753 48999999999998 99999999 67777554 46677
Q ss_pred cchhhHHHHHHHHHH
Q 030114 166 HKAWLVIEEVREMIK 180 (183)
Q Consensus 166 ~~~~~~~~~l~~~i~ 180 (183)
+.+ +.|.+|-.
T Consensus 119 R~K----d~iieFAh 129 (468)
T KOG4277|consen 119 REK----DAIIEFAH 129 (468)
T ss_pred ccH----HHHHHHHH
Confidence 777 77777653
No 85
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.24 E-value=1.7e-10 Score=90.25 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++++||+|||+||++|....|.|++++++|++ ++.++.|+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 579999999999999999999999999999975 4999999874
No 86
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.24 E-value=3.7e-11 Score=85.68 Aligned_cols=66 Identities=20% Similarity=0.430 Sum_probs=53.1
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEEcCCCh-----------------------HHHHHhcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT---KLKFYYVDVNKVS-----------------------KDLVKRGN 149 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~---~v~~~~vd~d~~~-----------------------~~~~~~~~ 149 (183)
.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.|++|... ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 689999999999999999999999999988753 5788888887552 23667788
Q ss_pred eE-------EeeCCeEEEE
Q 030114 150 IS-------IWKDGEMKSE 161 (183)
Q Consensus 150 i~-------~~~~Gk~v~~ 161 (183)
|. |.++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 77 5568987654
No 87
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.23 E-value=1.3e-10 Score=93.00 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=59.8
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh----------HHHHHhcCeE------Eee-CCe
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNIS------IWK-DGE 157 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----------~~~~~~~~i~------~~~-~Gk 157 (183)
-.++++||+||++||++|+.+.|.|++++++|+ +.++.|++|..+ ..++++++|. ++. +|+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 368999999999999999999999999999984 667777776521 2388999998 444 355
Q ss_pred EEE-EEecCcchhhHHHHHHHHH
Q 030114 158 MKS-EVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 158 ~v~-~~~G~~~~~~~~~~l~~~i 179 (183)
.+. ...|..+. ++|.+.|
T Consensus 242 ~v~~v~~G~~s~----~eL~~~i 260 (271)
T TIGR02740 242 QFTPIGFGVMSA----DELVDRI 260 (271)
T ss_pred EEEEEEeCCCCH----HHHHHHH
Confidence 554 45588888 5555544
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.6e-11 Score=99.51 Aligned_cols=90 Identities=28% Similarity=0.535 Sum_probs=75.1
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------EeeCC
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IWKDG 156 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~~~G 156 (183)
...+...+ ..+++++|.||+|||++|+.+.|.+.+++..+++.+.++.||++.+.+ ++++|+|. +|..|
T Consensus 37 ~~~~~~~~----~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 37 DSFFDFLL----KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred cccHHHhh----ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEEEEEcCC
Confidence 33444455 689999999999999999999999999999998889999999999998 99999999 77777
Q ss_pred eEEEEEecCcchhhHHHHHHHHHHh
Q 030114 157 EMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 157 k~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.....+.|..+. +.+.+++.+
T Consensus 112 ~~~~~~~~~~~~----~~~~~~~~~ 132 (383)
T KOG0191|consen 112 KKPIDYSGPRNA----ESLAEFLIK 132 (383)
T ss_pred CceeeccCcccH----HHHHHHHHH
Confidence 556677777776 666666543
No 89
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.21 E-value=1.1e-10 Score=87.50 Aligned_cols=77 Identities=12% Similarity=0.196 Sum_probs=58.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC------------hHHHHHhcCe--E-------EeeCCeEE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV------------SKDLVKRGNI--S-------IWKDGEMK 159 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~------------~~~~~~~~~i--~-------~~~~Gk~v 159 (183)
+|+||++||++|+.+.|.+++++++|+ +.++.|++|.. +..+...|++ . +.++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999983 77777777643 1235667874 2 66899986
Q ss_pred -EEEecCcchhhHHHHHHHHH
Q 030114 160 -SEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 160 -~~~~G~~~~~~~~~~l~~~i 179 (183)
..+.|..+...+.+.+.+.+
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999844444444444
No 90
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.21 E-value=3e-11 Score=83.93 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh---HHHHHhcCe
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNI 150 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~i 150 (183)
.+++++|+||++||++|+.+.|.++++++++++++.++.+. +... ..+++++++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 37999999999999999999999999999887777777663 2221 125555555
No 91
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.20 E-value=1.9e-10 Score=84.31 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC-------CChH---HHHHh-cCe-------------
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN-------KVSK---DLVKR-GNI------------- 150 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d-------~~~~---~~~~~-~~i------------- 150 (183)
.++++||.|||+||++|+...|.+.+++++|++ ++.++.|+++ ..++ .++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 688999999999999999999999999999965 6999999852 1111 12321 222
Q ss_pred ----------------------E--EeeCCeEEEEEecCcchhhHHHHHHHHHHhhC
Q 030114 151 ----------------------S--IWKDGEMKSEVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 151 ----------------------~--~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+ +.++|+++.++.|..+. ++|.+.|++.|
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~----~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPV----EEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCH----HHHHHHHHHhC
Confidence 1 56889999999999888 66666666543
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.20 E-value=1e-10 Score=73.75 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=50.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMK 159 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v 159 (183)
++.|+++||++|+.+.|.++++++.+ +++.+..+|+++.++ +++++++. ++-+|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti~i~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAIVINGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEEEECCEEE
Confidence 67799999999999999999998775 789999999999987 89999997 77788643
No 93
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.18 E-value=1e-10 Score=78.71 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEEcCCChH
Q 030114 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK 142 (183)
Q Consensus 97 ~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~ 142 (183)
||+++|+|||+||++|+.+.|.+.++++.|+ +++.++.|+.|+..+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~ 48 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE 48 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH
Confidence 6899999999999999999999999999997 689999999997744
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.17 E-value=1e-10 Score=83.30 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=61.9
Q ss_pred cCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCChHHHH-HhcCeE----
Q 030114 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSKDLV-KRGNIS---- 151 (183)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~~~~-~~~~i~---- 151 (183)
|....+|++.+..|+..+|+++|+|++.||++|+.+...+ .++.+..+.++..+.++.+....... ...++.
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g~~vPtivF 85 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDGQYVPRIMF 85 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccCcccCeEEE
Confidence 5555578999988989999999999999999999999764 34444443456766777653311011 112233
Q ss_pred EeeCCeEEEEEecCcc
Q 030114 152 IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 152 ~~~~Gk~v~~~~G~~~ 167 (183)
+..+|+++.++.|..+
T Consensus 86 ld~~g~vi~~i~Gy~~ 101 (130)
T cd02960 86 VDPSLTVRADITGRYS 101 (130)
T ss_pred ECCCCCCccccccccc
Confidence 5578999999999875
No 95
>PLN02412 probable glutathione peroxidase
Probab=99.17 E-value=3.2e-10 Score=84.55 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++++||+||++||++|+...|.|.+++++|++ ++.++.|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 579999999999999999999999999999975 4999999874
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.14 E-value=3e-10 Score=77.74 Aligned_cols=68 Identities=29% Similarity=0.572 Sum_probs=57.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEEcCCC-----------------------hHHHHHhcCeE
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKV-----------------------SKDLVKRGNIS 151 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~-----------------------~~~~~~~~~i~ 151 (183)
.++++++.||++||++|+...+.+.++.++++ +++.++.|+++.. .. +.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGE-LAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcch-HHHhcCcC
Confidence 57999999999999999999999999999986 4699999999985 33 67777775
Q ss_pred -------EeeCCeEEEEEec
Q 030114 152 -------IWKDGEMKSEVIG 164 (183)
Q Consensus 152 -------~~~~Gk~v~~~~G 164 (183)
+.++|+++.++.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 5578888887765
No 97
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.14 E-value=3.1e-10 Score=85.53 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=60.8
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEE------EEEEcCCChH--------------------------
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKF------YYVDVNKVSK-------------------------- 142 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~------~~vd~d~~~~-------------------------- 142 (183)
-.+|.++|+|||+||++|+...|.++++.++ ++.+ +.||.|+...
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 4799999999999999999999999999653 3555 7777775321
Q ss_pred --HHHHhcCeE--------EeeCCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 143 --DLVKRGNIS--------IWKDGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 143 --~~~~~~~i~--------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
.+...|++. ++++|+++.++.|..+.+.+.+ +...|++.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~~l 182 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVNGL 182 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHHHH
Confidence 122334433 6789999999999988744333 55555543
No 98
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.12 E-value=5.2e-10 Score=74.85 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcch
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~ 168 (183)
.+..-+.-|+++||++|....+.++++++.+ +++.+..+|+++.++ ++++|+|. ++.||+.+.. |..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~vidG~~~~~--G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAIFLNGELFGF--GRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEEEECCEEEEe--CCCCH
Confidence 3444688889999999999999999999887 789999999999987 99999998 7789998774 76554
No 99
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.12 E-value=2.2e-10 Score=81.26 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=38.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEc
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 137 (183)
.+++++|+||++||++|+...|.|+++++++++ ++.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 579999999999999999999999999999974 588888865
No 100
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.09 E-value=9e-10 Score=79.82 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=59.9
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH--------------------HHHHhcCe---
Q 030114 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK--------------------DLVKRGNI--- 150 (183)
Q Consensus 96 ~~k~vlv~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~--------------------~~~~~~~i--- 150 (183)
.+++++|+||++ |||+|+...|.+.++++.|++ ++.++.|..+..+. .+.+.|++
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 789999999999 999999999999999999755 48999988875532 35556662
Q ss_pred -------E------EeeCCeEEEEEecCcc
Q 030114 151 -------S------IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 151 -------~------~~~~Gk~v~~~~G~~~ 167 (183)
. |.++|++++...|..+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 1 7899999999999987
No 101
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.09 E-value=1e-09 Score=77.12 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=54.8
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc---------------------CCChHHHHHhcCeE--
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV---------------------NKVSKDLVKRGNIS-- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~---------------------d~~~~~~~~~~~i~-- 151 (183)
..+++++|+||++||++|+.+.|.+.++++++ .+..+.+|- |... .++++|+|.
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~ 94 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVT 94 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcc
Confidence 35799999999999999999999999998774 222222221 1222 378888887
Q ss_pred ----Ee-eCCeEEEEEecCcchhhHHHHHHH
Q 030114 152 ----IW-KDGEMKSEVIGGHKAWLVIEEVRE 177 (183)
Q Consensus 152 ----~~-~~Gk~v~~~~G~~~~~~~~~~l~~ 177 (183)
++ ++| +..++.|..+. +.|.+
T Consensus 95 P~~~vid~~g-i~~~~~g~~~~----~~~~~ 120 (123)
T cd03011 95 PAIVIVDPGG-IVFVTTGVTSE----WGLRL 120 (123)
T ss_pred cEEEEEcCCC-eEEEEeccCCH----HHHHh
Confidence 44 555 88899999998 66654
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.08 E-value=5.1e-10 Score=85.06 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=46.9
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC-------------------hHHHHHhcCeE----
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV-------------------SKDLVKRGNIS---- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~-------------------~~~~~~~~~i~---- 151 (183)
..+++++|+||++||++|+.+.|.+.++.++++.++.++ +.+.. ...+.+.|++.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~I--s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMI--SDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEE--eCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 368999999999999999999999999988764344444 32211 11255666665
Q ss_pred ---EeeCCeEEEE
Q 030114 152 ---IWKDGEMKSE 161 (183)
Q Consensus 152 ---~~~~Gk~v~~ 161 (183)
++++|++..+
T Consensus 150 ~~lID~~G~I~~~ 162 (189)
T TIGR02661 150 GVLLDQDGKIRAK 162 (189)
T ss_pred EEEECCCCeEEEc
Confidence 6788988775
No 103
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.06 E-value=8.7e-10 Score=80.80 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=38.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.+++++|+|||+||+ |....|.|++++++|++ ++.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 689999999999999 99999999999999964 5999999764
No 104
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.1e-10 Score=87.06 Aligned_cols=89 Identities=22% Similarity=0.399 Sum_probs=76.4
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE--
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
...+..++.+.+++.+.. +....|+|.|+|.|.+.|..+.|.+.+++.+|.. .++|.+||+...++ .+++|+|+
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccC
Confidence 346667778888888743 4667899999999999999999999999999964 59999999999998 99999999
Q ss_pred ----------EeeCCeEEEEEecCc
Q 030114 152 ----------IWKDGEMKSEVIGGH 166 (183)
Q Consensus 152 ----------~~~~Gk~v~~~~G~~ 166 (183)
+|++|+++.|..-..
T Consensus 201 ~~srQLPT~ilFq~gkE~~RrP~vd 225 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRRPDVD 225 (265)
T ss_pred cccccCCeEEEEccchhhhcCcccc
Confidence 899999988766443
No 105
>smart00594 UAS UAS domain.
Probab=99.05 E-value=2.6e-09 Score=75.56 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=72.1
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCCh-HHHHHhcCeE-------E
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS-------I 152 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~-~~~~~~~~i~-------~ 152 (183)
..|++++..|+..+|+++|+|+++||++|+.+...+ .++.+..+.++.+..+|++... ..+++.|+++ +
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 468888888878999999999999999999998754 4555555567889899988653 2589999998 5
Q ss_pred eeCC-----eEEEEEecCcchhhHHHHHHHHH
Q 030114 153 WKDG-----EMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 153 ~~~G-----k~v~~~~G~~~~~~~~~~l~~~i 179 (183)
..+| +.+.++.|..+. ++|.+++
T Consensus 94 ~~~~g~~~~~~~~~~~G~~~~----~~l~~~l 121 (122)
T smart00594 94 DPRTGQRVIEWVGVVEGEISP----EELMTFL 121 (122)
T ss_pred ecCCCceeEEEeccccCCCCH----HHHHHhh
Confidence 5666 357788898887 7776654
No 106
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.04 E-value=4.4e-10 Score=73.93 Aligned_cols=59 Identities=22% Similarity=0.537 Sum_probs=50.0
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCChH
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
.++++++..|+..++|++|+|+++||++|+.+...+ .++.+.+..++.++.+|.+....
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP 65 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh
Confidence 468888888889999999999999999999999877 55666565789999999987754
No 107
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.01 E-value=7.3e-09 Score=73.88 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=72.5
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeC--CCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE------Eee
Q 030114 84 DHLDQILLRAQELSQPILIDWMA--SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS------IWK 154 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a--~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~------~~~ 154 (183)
.++++.+ ......++.|.. .-++.+....-.|++++++|.+ ++++++||+|++++ ++.+|+|. +|+
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPATLVFT 99 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEEEEEE
Confidence 5667777 345555554433 3477888888899999999963 59999999999998 99999999 999
Q ss_pred CCeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 155 DGEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 155 ~Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
||+.+.++.|..++ +++.++|+++
T Consensus 100 dGk~v~~i~G~~~k----~~l~~~I~~~ 123 (132)
T PRK11509 100 GGNYRGVLNGIHPW----AELINLMRGL 123 (132)
T ss_pred CCEEEEEEeCcCCH----HHHHHHHHHH
Confidence 99999999999999 6666666654
No 108
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.98 E-value=1.6e-09 Score=93.11 Aligned_cols=97 Identities=23% Similarity=0.404 Sum_probs=74.3
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLE---KLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~---~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~ 151 (183)
..+.+..++++++.++ .+|||++||||+||-.||.+.+..- +...+. .+++..++|++++.. ++.++||+-
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 6677777899999653 4469999999999999999998652 333334 679999999998853 467788877
Q ss_pred ------Ee-eCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 ------IW-KDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 ------~~-~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+| .+|++...+.|..+. +.+.+.+++
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a----~~~~~~l~~ 566 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTA----DAFLEHLER 566 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecH----HHHHHHHHH
Confidence 44 478887778999998 666666654
No 109
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.6e-09 Score=88.01 Aligned_cols=97 Identities=21% Similarity=0.401 Sum_probs=78.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEEcCCChHHHHHhcCeE---
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
+..++ .++|...+. ..+..++|.||+|||++|+.+.|.+++++..++ ..+.+..+|++.... ++.+++|+
T Consensus 146 v~~l~-~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~P 220 (383)
T KOG0191|consen 146 VFELT-KDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYP 220 (383)
T ss_pred eEEcc-ccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCc
Confidence 33443 556666654 578899999999999999999999999999885 569999999996665 89999998
Q ss_pred ---EeeCCeE-EEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 ---IWKDGEM-KSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ---~~~~Gk~-v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|++|.. .....|.++. +.|..++++.
T Consensus 221 t~~~f~~~~~~~~~~~~~R~~----~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYSGLRDS----DSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCcccccccccccH----HHHHHHHHhh
Confidence 8888887 7777788777 7888887653
No 110
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.91 E-value=1.1e-08 Score=77.21 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~v-lv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++++ ++.+||+||++|+...|.|++++++|++ ++.++.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 57765 4556999999999999999999999965 5999999864
No 111
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1e-09 Score=93.61 Aligned_cols=68 Identities=21% Similarity=0.470 Sum_probs=56.7
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc---CCeEEEEEEcCCC-hHHHHHhcCeE
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD---TKLKFYYVDVNKV-SKDLVKRGNIS 151 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~~-~~~~~~~~~i~ 151 (183)
.+.++|..++.. +.+..+|.||++|||+|+.++|.|+++++... +-+.++.|||... +..+|++|+|+
T Consensus 44 Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 44 LDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred eehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 357899999952 34689999999999999999999999998853 4488999998654 33599999999
No 112
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.90 E-value=6.8e-09 Score=70.46 Aligned_cols=72 Identities=28% Similarity=0.566 Sum_probs=58.2
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC-CChHHHHHhcC--eE------EeeCCeEEEEEec--
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN-KVSKDLVKRGN--IS------IWKDGEMKSEVIG-- 164 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d-~~~~~~~~~~~--i~------~~~~Gk~v~~~~G-- 164 (183)
.+++++++||++||++|+.+.|.+.++++++...+.++.+|.. .... +...++ +. ++.+|+.+....+
T Consensus 31 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 31 KGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred CCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 3789999999999999999999999999999667999999997 5665 777777 44 5577776666666
Q ss_pred Ccch
Q 030114 165 GHKA 168 (183)
Q Consensus 165 ~~~~ 168 (183)
..+.
T Consensus 110 ~~~~ 113 (127)
T COG0526 110 VLPK 113 (127)
T ss_pred cCCH
Confidence 4554
No 113
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.81 E-value=4.6e-08 Score=72.90 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEEcCC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~ 139 (183)
.++++||.||++||+.|....|.+.++++++. .++.|+.|+.|.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 67999999999999999999999999999996 469999998864
No 114
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.75 E-value=5.8e-08 Score=73.36 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++++||.|||+||++|. ..|.|++++++|++ ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 689999999999999997 58899999999965 5999999875
No 115
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.74 E-value=2e-08 Score=73.17 Aligned_cols=47 Identities=17% Similarity=0.467 Sum_probs=41.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEEcCCChH
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK---LKFYYVDVNKVSK 142 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~d~~~~ 142 (183)
.+|.|.++|.|.|||||+.+.|++.+++++...+ +.++.|+-|...+
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~ 81 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEE 81 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHH
Confidence 6899999999999999999999999999987655 8888898886643
No 116
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.71 E-value=4.6e-08 Score=77.95 Aligned_cols=104 Identities=14% Similarity=0.271 Sum_probs=77.9
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
-.+.+|.+.+.|-+++... ..+..|||+||-+.++.|..+...|..||.+| +.++|++|.....+ +...|.+.
T Consensus 125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~LP 200 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNLP 200 (265)
T ss_dssp -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-S
T ss_pred ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCCC
Confidence 4577888888888887422 23457999999999999999999999999999 88999999998765 45666555
Q ss_pred ---EeeCCeEEEEEecCcch---hhHHHHHHHHHHhh
Q 030114 152 ---IWKDGEMKSEVIGGHKA---WLVIEEVREMIKKF 182 (183)
Q Consensus 152 ---~~~~Gk~v~~~~G~~~~---~~~~~~l~~~i~~~ 182 (183)
+|++|..+..++|.... .+..+.|+.+|.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999999987643 56677888888654
No 117
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.70 E-value=1.1e-07 Score=68.17 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH--------------------HHHHhcCeE--
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK--------------------DLVKRGNIS-- 151 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~--------------------~~~~~~~i~-- 151 (183)
.+++++|.|| +.||+.|....|.+.++++++.+ ++.++.|..+.... .+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 5899999999 58999999999999999998854 58888888764321 233344422
Q ss_pred --------------EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 --------------IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 --------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
+.++|+++..+.|..+. +.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~----~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPK----GHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCcc----chHHHHh
Confidence 55789999999999877 4554443
No 118
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.70 E-value=1.2e-07 Score=68.50 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh----------------------HHHHHhcCeE-
Q 030114 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------------------KDLVKRGNIS- 151 (183)
Q Consensus 96 ~~k~vlv~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----------------------~~~~~~~~i~- 151 (183)
.++++||.||++| |++|+...|.|.++++++ .++.++.|+.|... ..+++.|++.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5789999999999 699999999999999998 57899999886321 2355566652
Q ss_pred ------------EeeCCeEEEEEecCc
Q 030114 152 ------------IWKDGEMKSEVIGGH 166 (183)
Q Consensus 152 ------------~~~~Gk~v~~~~G~~ 166 (183)
+.++|+++...+|..
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCC
Confidence 557899999888764
No 119
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.67 E-value=2e-07 Score=69.63 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH---------------------------HHHH
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK---------------------------DLVK 146 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~---------------------------~~~~ 146 (183)
.++++||.|| ++||++|....|.|.++++++.. ++.++.|+.|.... .+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999854 58888888764311 2344
Q ss_pred hcCeE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 147 RGNIS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 147 ~~~i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.|++. |.++|+++..+++..+.+...+++.+.|+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45531 667899999988776543344566666643
No 120
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.67 E-value=2e-07 Score=70.72 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=61.7
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh------------------------HHHHHhcC
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS------------------------KDLVKRGN 149 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~------------------------~~~~~~~~ 149 (183)
.++++||.|| +.||++|....|.|.+++++++. ++.++.|+.|... ..+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999999853 5788888776421 13566676
Q ss_pred eE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 150 IS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 150 i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+. |.++|++.....+....+...+++.+.|+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 51 55789998877655433334456655553
No 121
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.67 E-value=1e-07 Score=71.33 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=79.3
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--- 151 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--- 151 (183)
....+|.++.+|-+.+ .....||+.||-|.-..|+.|...|+.+|+.| -..+|++||+...|= ++.+++|.
T Consensus 66 G~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PF-lv~kL~IkVLP 139 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPF-LVTKLNIKVLP 139 (211)
T ss_pred ceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCce-eeeeeeeeEee
Confidence 4677898888888887 57899999999999999999999999999998 778999999999996 99999999
Q ss_pred ---EeeCCeEEEEEecCcc
Q 030114 152 ---IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 152 ---~~~~Gk~v~~~~G~~~ 167 (183)
+|+||+.+.+++|+..
T Consensus 140 ~v~l~k~g~~~D~iVGF~d 158 (211)
T KOG1672|consen 140 TVALFKNGKTVDYVVGFTD 158 (211)
T ss_pred eEEEEEcCEEEEEEeeHhh
Confidence 9999999999999864
No 122
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.63 E-value=3.2e-07 Score=68.33 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC
Q 030114 96 LSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv~F~a~w-C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~ 139 (183)
.+++++|+||++| |++|....|.|.++++++ .++.++.|+.|.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCC
Confidence 5789999999999 999999999999999998 578899888873
No 123
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.63 E-value=2.8e-07 Score=66.81 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=59.7
Q ss_pred CcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh----------------------HHHHHhcCeE--
Q 030114 98 QPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS----------------------KDLVKRGNIS-- 151 (183)
Q Consensus 98 k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~----------------------~~~~~~~~i~-- 151 (183)
++++|.|| ++||+.|....|.+.++++++++ ++.++.|+.+... ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 88888887 99999999999999999999854 6888888876321 1244555542
Q ss_pred -----------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 152 -----------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 152 -----------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+.++|+++.++.|.........++.+.|+
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 55789999988887632223355555543
No 124
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.60 E-value=3.4e-07 Score=57.90 Aligned_cols=66 Identities=21% Similarity=0.404 Sum_probs=48.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeEEEEEecCcchhhHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEMKSEVIGGHKAWLVIE 173 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~~~~ 173 (183)
+..|+++||++|+.+.+.|++ .++.+..+|++..++ .+.+.+++. ++-+|+. +.|. +. +
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~---~~g~-~~----~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKI---IVGF-DP----E 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEE---EeeC-CH----H
Confidence 456999999999999988865 357888999988764 245567766 5556654 6675 44 7
Q ss_pred HHHHHHH
Q 030114 174 EVREMIK 180 (183)
Q Consensus 174 ~l~~~i~ 180 (183)
+|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8888764
No 125
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.57 E-value=9.2e-07 Score=64.64 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=56.7
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh--------------------HHHHHhcCe---
Q 030114 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS--------------------KDLVKRGNI--- 150 (183)
Q Consensus 96 ~~k~vlv~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~--------------------~~~~~~~~i--- 150 (183)
.+++++|+||+. ||+.|....+.+.++++++++ ++.++.|+.|... ..+.+.|++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999986 688899999999999999864 5889999886332 124555653
Q ss_pred ------------E----EeeCCeEEEEEecCcch
Q 030114 151 ------------S----IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 151 ------------~----~~~~Gk~v~~~~G~~~~ 168 (183)
+ |.++|+++..+.|..+.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 1 55799999999998776
No 126
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.53 E-value=2e-06 Score=60.26 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=71.8
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCC----CChhhhhhh--HHHHHHHHHhcCCeEEEEEEcCCChH-HHHHhcCeE------
Q 030114 85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYLK--PKLEKLAAEFDTKLKFYYVDVNKVSK-DLVKRGNIS------ 151 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~----wC~~C~~~~--p~l~~la~~~~~~v~~~~vd~d~~~~-~~~~~~~i~------ 151 (183)
.|.+++..|+.+.|+++|+++++ ||..|+... |.+.++. +.++.+...|++.... .++..++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NTRMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---HcCEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 57788888889999999999999 899997765 4555544 3568999999987642 488889888
Q ss_pred Ee--eC--CeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 IW--KD--GEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 ~~--~~--Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++ ++ .+++.++.|..+++.+...|..++++
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 22 23 45689999999996666666666654
No 127
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.53 E-value=8.6e-07 Score=62.01 Aligned_cols=46 Identities=15% Similarity=0.468 Sum_probs=41.5
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh
Q 030114 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS 141 (183)
Q Consensus 96 ~~k~vlv~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~ 141 (183)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|+.+...
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc
Confidence 579999999999 999999999999999999864 6999999997664
No 128
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.47 E-value=1.8e-06 Score=65.56 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=61.4
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh------------------------HHHHHhcC
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS------------------------KDLVKRGN 149 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~------------------------~~~~~~~~ 149 (183)
.++++++.|| +.||+.|....+.|.++++++.. ++.++.|+.|... ..+++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999999853 5888888876531 13556666
Q ss_pred eE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 150 IS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 150 i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+. +.++|++.+........+.-.+++.+.|+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 51 66789988876654333223355555553
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.46 E-value=1.6e-06 Score=62.56 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=41.2
Q ss_pred CCCcEEEEE-eCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH--HHHHhcCeE
Q 030114 96 LSQPILIDW-MASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK--DLVKRGNIS 151 (183)
Q Consensus 96 ~~k~vlv~F-~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~--~~~~~~~i~ 151 (183)
.+++++|.| +++||++|+...|.|.++++++.+ ++.++.|+.+.... .+.+.+++.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~ 81 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP 81 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 445555555 699999999999999999999853 69999999876543 134444444
No 130
>PRK15000 peroxidase; Provisional
Probab=98.45 E-value=2.2e-06 Score=65.67 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH---------------------------HHHH
Q 030114 96 LSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK---------------------------DLVK 146 (183)
Q Consensus 96 ~~k~vlv~F~a~-wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~---------------------------~~~~ 146 (183)
.++++|+.||+. ||+.|....+.|.+++++++. ++.++.|++|.... .+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 999999999999999999963 58899999884321 1223
Q ss_pred hcCeE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 147 RGNIS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 147 ~~~i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
.|++. |.++|++.+...|..+.+.-.+++.+.|+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 33331 66789999988887666555566666664
No 131
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.41 E-value=9.6e-08 Score=73.46 Aligned_cols=88 Identities=27% Similarity=0.448 Sum_probs=72.4
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChHHHHHhcCeE----Ee--
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSKDLVKRGNIS----IW-- 153 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~~~~~~~~i~----~~-- 153 (183)
.+.+++...+ ..-+++.|+|||||.|+...|.++.++.--.+ .+.+.+||++.++. +.-+|-++ ||
T Consensus 29 ~~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 29 IDEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTIYHV 101 (248)
T ss_pred ecccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceEEEe
Confidence 3577888887 46689999999999999999999999876433 69999999999998 88888887 44
Q ss_pred eCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 154 KDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
+||.- .|+.|.+++ +.+..|++
T Consensus 102 kDGeF-rrysgaRdk----~dfisf~~ 123 (248)
T KOG0913|consen 102 KDGEF-RRYSGARDK----NDFISFEE 123 (248)
T ss_pred ecccc-ccccCcccc----hhHHHHHH
Confidence 67754 789999998 77776664
No 132
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.40 E-value=1.5e-06 Score=56.72 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=42.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH----HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----~~~~~~~i~----~~~~Gk~ 158 (183)
|+.|+++|||+|+.+.+.|+++. ..+.+.++.+|.+.... .+.+.+++. ++.+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 46799999999999999999986 33457888888876543 245555654 8888865
No 133
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.38 E-value=2e-06 Score=63.48 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=48.8
Q ss_pred HHHHHHhhhCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEEcCCChHHHHHhc--------CeE----
Q 030114 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRG--------NIS---- 151 (183)
Q Consensus 87 ~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~~~~~~~--------~i~---- 151 (183)
++++..|+..+||++|+++++||..|+.|... | .++++.++.++.-++||.++.|+ +...| +..
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCc
Confidence 34555555899999999999999999999863 3 55666666678999999999997 66666 222
Q ss_pred ---EeeCCeEEEE
Q 030114 152 ---IWKDGEMKSE 161 (183)
Q Consensus 152 ---~~~~Gk~v~~ 161 (183)
+..+|+++.-
T Consensus 106 ~vfltPdg~p~~~ 118 (163)
T PF03190_consen 106 TVFLTPDGKPFFG 118 (163)
T ss_dssp EEEE-TTS-EEEE
T ss_pred eEEECCCCCeeee
Confidence 5578888664
No 134
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.37 E-value=2.7e-06 Score=56.06 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=54.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh---HHHHHhcC-----eE-EeeCCeEEEEEecCcchhh
Q 030114 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGN-----IS-IWKDGEMKSEVIGGHKAWL 170 (183)
Q Consensus 100 vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~-----i~-~~~~Gk~v~~~~G~~~~~~ 170 (183)
-++.|+.+||+.|+.....|+++..++ .++.+..+|++..+ +.+.+..+ +. +|.||+. +.|.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~---igg~----- 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKH---IGGC----- 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEE---EcCH-----
Confidence 367799999999999999999999876 67889999998763 22554444 22 8899975 2344
Q ss_pred HHHHHHHHHHhh
Q 030114 171 VIEEVREMIKKF 182 (183)
Q Consensus 171 ~~~~l~~~i~~~ 182 (183)
++|.++++.+
T Consensus 73 --~~~~~~~~~~ 82 (85)
T PRK11200 73 --TDFEAYVKEN 82 (85)
T ss_pred --HHHHHHHHHh
Confidence 6777777765
No 135
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.34 E-value=7.3e-06 Score=62.94 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=60.1
Q ss_pred Cc-EEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh--------------------------HHHHHhcC
Q 030114 98 QP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS--------------------------KDLVKRGN 149 (183)
Q Consensus 98 k~-vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~--------------------------~~~~~~~~ 149 (183)
++ +|+.|+++||+.|....+.|.+++++++. ++.++.|++|... ..+++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 45689999999999999999999999864 5889999887421 13556666
Q ss_pred eE---------------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 150 IS---------------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 150 i~---------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+. |.++|++...+.+..+.+...+++.+.|+.
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 41 557898888877755443334666666643
No 136
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.33 E-value=5.9e-06 Score=56.58 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=61.2
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh---HHHHHhcCeE---
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNIS--- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~i~--- 151 (183)
.++++.+++++++..+ ..+|++|.=.++.||-.......|++......+++.++.+|+-++. ..++++|||.
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 5688999999999653 5888888779999999999999999999998656999999998873 3599999999
Q ss_pred ----EeeCCeEEEEEe
Q 030114 152 ----IWKDGEMKSEVI 163 (183)
Q Consensus 152 ----~~~~Gk~v~~~~ 163 (183)
+++||+.+..-.
T Consensus 80 PQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 80 PQVILIKNGKVVWHAS 95 (105)
T ss_dssp SEEEEEETTEEEEEEE
T ss_pred CcEEEEECCEEEEECc
Confidence 889999886544
No 137
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.32 E-value=3.8e-06 Score=60.03 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=38.8
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhc-CCeEEEEEEcCC
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~ 139 (183)
.+++++|.|| +.||+.|....|.+.+++++++ .++.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6899999999 7899999999999999999984 468899998864
No 138
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.31 E-value=1.1e-05 Score=62.45 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=61.0
Q ss_pred CCCcEEE-EEeCCCChhhhhhhHHHHHHHHHhc-CCeEEEEEEcCCChH--------------------------HHHHh
Q 030114 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSK--------------------------DLVKR 147 (183)
Q Consensus 96 ~~k~vlv-~F~a~wC~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~~~--------------------------~~~~~ 147 (183)
.+++++| .|+++||+.|....+.|.+++++++ .++.++.+++|.... .+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4666554 8899999999999999999999985 358899998875421 24445
Q ss_pred cCe----------E----EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 148 GNI----------S----IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 148 ~~i----------~----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
|++ + |.++|++.+.+.+..+.+.-.+++...|+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~ 158 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIR 158 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 553 1 66789988877766554444566666654
No 139
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.29 E-value=1.5e-06 Score=55.67 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=28.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
++.||++||++|+.+.+.|.++. +.+-.+|+++.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~ 37 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEG 37 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHh
Confidence 56799999999999999887653 4455788887765
No 140
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.27 E-value=1.5e-06 Score=62.35 Aligned_cols=44 Identities=14% Similarity=0.401 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcC----CeEEEEEEcCC
Q 030114 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT----KLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~d~ 139 (183)
.+++++|.||++||++ |....+.+.++++++++ ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5789999999999998 99999999999999864 49999998864
No 141
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.27 E-value=1.1e-05 Score=52.09 Aligned_cols=69 Identities=19% Similarity=0.398 Sum_probs=52.0
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEec-CcchhhHHHHHH
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIG-GHKAWLVIEEVR 176 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G-~~~~~~~~~~l~ 176 (183)
|.+++++|+.|..+...+++++.++ + +.+--+|....++ + .+|+|. ++-||+. ++.| ..+. ++|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~-~-~~ygv~~vPalvIng~~--~~~G~~p~~----~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEE-I-EKYGVMSVPALVINGKV--VFVGRVPSK----EELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHH-H-HHTT-SSSSEEEETTEE--EEESS--HH----HHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHH-H-HHcCCCCCCEEEECCEE--EEEecCCCH----HHHH
Confidence 3447888999999999999999998 4 7676677744454 5 999999 8899986 4688 6666 8888
Q ss_pred HHHH
Q 030114 177 EMIK 180 (183)
Q Consensus 177 ~~i~ 180 (183)
++|+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8774
No 142
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.23 E-value=1.9e-05 Score=61.25 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH--------------------------HHHHh
Q 030114 96 LSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK--------------------------DLVKR 147 (183)
Q Consensus 96 ~~k~-vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~--------------------------~~~~~ 147 (183)
.+++ +|+.|+++||++|....+.|.+++++++. ++.++.+++|.... .+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4566 46799999999999999999999999854 68899998885311 24556
Q ss_pred cCe----------E----EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 148 GNI----------S----IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 148 ~~i----------~----~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
|++ + |.++|++...+....+.+...+++.+.|+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 664 1 557898877765433333334666666543
No 143
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.23 E-value=1e-05 Score=62.07 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCC
Q 030114 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv-~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~ 139 (183)
.++.++| .||++||+.|....+.|.+++++++. ++.++.|++|.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4666655 68999999999999999999999864 58888888774
No 144
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.8e-07 Score=68.13 Aligned_cols=84 Identities=12% Similarity=0.241 Sum_probs=72.5
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+..+...++| .. +.+++.+++|||+||.+|+.+.-.++.+++.. .++.|++.+.++.++ ++..+.+.
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~~ 74 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPYF 74 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCcee
Confidence 4456667777 33 47899999999999999999999999999888 889999999999998 88888777
Q ss_pred -EeeCCeEEEEEecCcch
Q 030114 152 -IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 152 -~~~~Gk~v~~~~G~~~~ 168 (183)
++..|+.+.++.|..+.
T Consensus 75 ~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPP 92 (227)
T ss_pred eeeecchhhhhhhccCcH
Confidence 66789999999998875
No 145
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.19 E-value=2.6e-05 Score=62.04 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=60.0
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh---------------------------HHHHH
Q 030114 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------------KDLVK 146 (183)
Q Consensus 96 ~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~---------------------------~~~~~ 146 (183)
.++++|+.|| +.||++|....|.|.+++++++. ++.++.|.+|... ..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5678888887 89999999999999999999863 5888888887521 13556
Q ss_pred hcCeE------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 147 RGNIS------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 147 ~~~i~------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
.|++. |.++|++.+........+.-.+++...|+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 66651 56789988877543333333455555553
No 146
>PRK13189 peroxiredoxin; Provisional
Probab=98.15 E-value=2.9e-05 Score=60.49 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH--------------------------HHHHh
Q 030114 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK--------------------------DLVKR 147 (183)
Q Consensus 96 ~~k~v-lv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~--------------------------~~~~~ 147 (183)
.++++ |+.|+++||+.|....+.|.+++++++. ++.++.|++|.... .+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 46654 5578999999999999999999999853 58888888874321 23444
Q ss_pred cCeE--------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 148 GNIS--------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 148 ~~i~--------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
|++. |.++|++.+...+..+.+...+++...|+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~ 160 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVK 160 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 4431 55788887777654443333356666654
No 147
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.15 E-value=3.4e-05 Score=59.83 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC-----------ChHHHHHhcCeE-------EeeCC-
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-----------VSKDLVKRGNIS-------IWKDG- 156 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-----------~~~~~~~~~~i~-------~~~~G- 156 (183)
.++.-|+.||.+.|+.|+.+.|.+..++++|+ +.++.|++|. +++ ++++++|. +..++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g-~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPG-QAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHH-HHHHcCCCcCCEEEEEECCCC
Confidence 57889999999999999999999999999994 6666666663 234 89999998 55565
Q ss_pred eEEEEEecCcchhhHHHHHHH
Q 030114 157 EMKSEVIGGHKAWLVIEEVRE 177 (183)
Q Consensus 157 k~v~~~~G~~~~~~~~~~l~~ 177 (183)
+...--.|..+. ++|.+
T Consensus 196 ~~~pv~~G~~s~----~~L~~ 212 (215)
T PF13728_consen 196 KWYPVSQGFMSL----DELED 212 (215)
T ss_pred eEEEEeeecCCH----HHHHH
Confidence 444455688887 55544
No 148
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.09 E-value=4.1e-05 Score=58.54 Aligned_cols=85 Identities=8% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCcEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH---------------------------HHHH
Q 030114 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK---------------------------DLVK 146 (183)
Q Consensus 96 ~~k~vlv~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~---------------------------~~~~ 146 (183)
.+++++|.||+ .||+.|....+.|.++++++.. ++.++.|++|.... .+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999995 8899999999999999999854 68888888874321 2455
Q ss_pred hcCeE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 147 RGNIS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 147 ~~~i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
.|++. |.++|++.....+..+.+...+++...|+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 56652 66788888887776555444455555554
No 149
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.07 E-value=1.6e-05 Score=56.79 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=46.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhc---CeE-------EeeCCeEEEEEecC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRG---NIS-------IWKDGEMKSEVIGG 165 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~---~i~-------~~~~Gk~v~~~~G~ 165 (183)
.++.-++-|..+|||.|....|.|.++++.. +++.+-.+..|++++ +.++| +.. +.++|+++.++...
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~I~~d~~~~~lg~wger 117 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTFIFLDKDGKELGRWGER 117 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence 5566788899999999999999999999986 677777777787776 55544 222 33568888876655
Q ss_pred cchhhHHHHHHHHHHh
Q 030114 166 HKAWLVIEEVREMIKK 181 (183)
Q Consensus 166 ~~~~~~~~~l~~~i~~ 181 (183)
+ +.+.+++++
T Consensus 118 -P-----~~~~~~~~~ 127 (129)
T PF14595_consen 118 -P-----KEVQELVDE 127 (129)
T ss_dssp -------HHHH-----
T ss_pred -C-----HHHhhcccc
Confidence 3 345555543
No 150
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.05 E-value=2.1e-05 Score=46.96 Aligned_cols=41 Identities=37% Similarity=0.666 Sum_probs=36.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
++.||++||++|+.+.+.+.++ .....++.+..+|++....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 41 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPA 41 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChH
Confidence 4789999999999999999999 4444789999999999876
No 151
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.01 E-value=0.00014 Score=51.44 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=65.3
Q ss_pred ecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------E
Q 030114 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------I 152 (183)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~ 152 (183)
.+++..+.++++.. +..+.++|-|.-.|-+.|..+...|.+.++..+.-..++.||+++.|+ +.+.|.+. |
T Consensus 4 ~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~dP~tvmF 80 (133)
T PF02966_consen 4 HLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELYDPCTVMF 80 (133)
T ss_dssp EE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS-SSEEEEE
T ss_pred ccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccCCCeEEEE
Confidence 46778889999865 589999999999999999999999999999986668999999999998 88888877 6
Q ss_pred eeCCeEEE
Q 030114 153 WKDGEMKS 160 (183)
Q Consensus 153 ~~~Gk~v~ 160 (183)
|.+++.+.
T Consensus 81 F~rnkhm~ 88 (133)
T PF02966_consen 81 FFRNKHMM 88 (133)
T ss_dssp EETTEEEE
T ss_pred EecCeEEE
Confidence 66777544
No 152
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.97 E-value=0.00014 Score=57.64 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh----------HHHHHhcCeE-------EeeC-Ce
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS----------KDLVKRGNIS-------IWKD-GE 157 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~----------~~~~~~~~i~-------~~~~-Gk 157 (183)
.++.-++.||.+.|+.|+.+.|.+..++++|+ +.++.|++|... ...+++++|. +.++ ++
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 56789999999999999999999999999994 666666666441 2378899988 5566 44
Q ss_pred EEEEEecCcchhhHHHHHHHHH
Q 030114 158 MKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 158 ~v~~~~G~~~~~~~~~~l~~~i 179 (183)
..---.|..+...+.+.|...+
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 4445568888855555544443
No 153
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.96 E-value=4.5e-05 Score=50.45 Aligned_cols=71 Identities=27% Similarity=0.469 Sum_probs=50.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh---HHHHHhcCe---E---EeeCCeEEEEEecCcchhhH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS---KDLVKRGNI---S---IWKDGEMKSEVIGGHKAWLV 171 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~---~~~~~~~~i---~---~~~~Gk~v~~~~G~~~~~~~ 171 (183)
++.|+.+|||+|..+...|+++..++ +++.+..+|++... ..+.+..+- + +|.||+. +|..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~----igG~----- 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKH----VGGC----- 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEE----ecCH-----
Confidence 56799999999999999999987665 45778888887543 125555552 2 8888865 4443
Q ss_pred HHHHHHHHHhh
Q 030114 172 IEEVREMIKKF 182 (183)
Q Consensus 172 ~~~l~~~i~~~ 182 (183)
++|.++++++
T Consensus 72 -~dl~~~~~~~ 81 (86)
T TIGR02183 72 -TDFEQLVKEN 81 (86)
T ss_pred -HHHHHHHHhc
Confidence 5677777654
No 154
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00012 Score=51.26 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=66.5
Q ss_pred ecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------E
Q 030114 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------I 152 (183)
Q Consensus 79 ~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~ 152 (183)
.+++....++++.. ...+.++|-|.-.|-|.|..+...|.+.++...+-..++-+|+++.++ +.+.|++. +
T Consensus 7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTVMF 83 (142)
T ss_pred ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceEEE
Confidence 46678888888854 578999999999999999999999999999986668899999999988 89999888 6
Q ss_pred eeCCeEE
Q 030114 153 WKDGEMK 159 (183)
Q Consensus 153 ~~~Gk~v 159 (183)
|.+++-+
T Consensus 84 Ffn~kHm 90 (142)
T KOG3414|consen 84 FFNNKHM 90 (142)
T ss_pred EEcCceE
Confidence 6666643
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.88 E-value=5.2e-05 Score=53.24 Aligned_cols=71 Identities=17% Similarity=0.447 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH------HHHH-
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVK- 146 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a-------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~------~~~~- 146 (183)
.+-++|.+.+......+++++|.|++ +|||.|....|.+++.......+..++.|.+..-+. .+..
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 34567777776544577899999985 499999999999999888765679999998853321 2444
Q ss_pred -hcCeE
Q 030114 147 -RGNIS 151 (183)
Q Consensus 147 -~~~i~ 151 (183)
+++++
T Consensus 83 p~~~l~ 88 (119)
T PF06110_consen 83 PDLKLK 88 (119)
T ss_dssp -CC---
T ss_pred ceeeee
Confidence 57776
No 156
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00016 Score=52.74 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=64.3
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCC---------------hHHHHHhcCeE-----
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKV---------------SKDLVKRGNIS----- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~---------------~~~~~~~~~i~----- 151 (183)
..++..++.|-.+.|+.|..+...+ .++.+.+.+++.++.+++... .+.+++.|+++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 6889999999999999999999765 556666667788999888533 12589999999
Q ss_pred --EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 --IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 --~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
+.++|+.+-.+.|+.++ +++...+
T Consensus 120 vFfdk~Gk~Il~lPGY~pp----e~Fl~vl 145 (182)
T COG2143 120 VFFDKTGKTILELPGYMPP----EQFLAVL 145 (182)
T ss_pred EEEcCCCCEEEecCCCCCH----HHHHHHH
Confidence 45678999999999998 6655444
No 157
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=9.1e-05 Score=51.47 Aligned_cols=61 Identities=18% Similarity=0.442 Sum_probs=48.9
Q ss_pred cCCchhHHHHHHHhhhCCCcEEEEEeC--------CCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh
Q 030114 80 INDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (183)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlv~F~a--------~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (183)
....+.|++.++.- .+++.++|.|++ +|||.|.+..|.+.+.-+....++.|+.|++..-+
T Consensus 9 ~~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 9 LPGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRP 77 (128)
T ss_pred cchHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCC
Confidence 34567788777655 456669999985 59999999999999998877678999999997653
No 158
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.79 E-value=0.00017 Score=45.13 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
++.|+++||++|..+.+.+.+. ++.+..+|++..+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~ 37 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPE 37 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHH
Confidence 5679999999999988777652 46677788877654
No 159
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.71 E-value=0.00022 Score=46.14 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=39.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH----HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK----DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~----~~~~~~~i~----~~~~Gk~ 158 (183)
++.|+++|||+|+.+.+.|+++.. .+.++.++.+.... .+.+..++. +|.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 467999999999999999988754 46677888776632 233444544 8888865
No 160
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.68 E-value=0.00048 Score=60.63 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcchhh
Q 030114 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKAWL 170 (183)
Q Consensus 96 ~~k~v-lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~ 170 (183)
=++++ +--|.+++|+.|......+++++.+. +++..-.+|....++ ++++|+|. ++-||+.+ +.|..+.
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~~i~~~~~--~~G~~~~-- 547 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAIVVDDQQV--YFGKKTI-- 547 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEEEECCEEE--EeeCCCH--
Confidence 35666 44558999999999999999999887 689999999999998 99999999 88899865 4588777
Q ss_pred HHHHHHHHH
Q 030114 171 VIEEVREMI 179 (183)
Q Consensus 171 ~~~~l~~~i 179 (183)
++|.++|
T Consensus 548 --~~~~~~~ 554 (555)
T TIGR03143 548 --EEMLELI 554 (555)
T ss_pred --HHHHHhh
Confidence 7777665
No 161
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.67 E-value=0.00038 Score=45.50 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=46.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHH---hcCeE----EeeCCeEEEEEecCcchhhHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVK---RGNIS----IWKDGEMKSEVIGGHKAWLVIE 173 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~---~~~i~----~~~~Gk~v~~~~G~~~~~~~~~ 173 (183)
+..|+.+||++|......|++ .++.|-.+|++..++ ..+ ..+.. ++.+|. .+.|+.. +
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~-~~~~~~~~g~~~vPvv~i~~~---~~~Gf~~-----~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPE-AAETLRAQGFRQLPVVIAGDL---SWSGFRP-----D 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCCCcCEEEECCE---EEecCCH-----H
Confidence 566899999999998887744 358888999998875 222 22322 555653 3557766 7
Q ss_pred HHHHHHHhh
Q 030114 174 EVREMIKKF 182 (183)
Q Consensus 174 ~l~~~i~~~ 182 (183)
+|.+++..+
T Consensus 68 ~l~~~~~~~ 76 (81)
T PRK10329 68 MINRLHPAP 76 (81)
T ss_pred HHHHHHHhh
Confidence 888877653
No 162
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.56 E-value=0.00083 Score=44.86 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=64.9
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----E
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS-----I 152 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~-----~ 152 (183)
.++++.++++..+ ...++++|-|+.++++ .....|.++|+.+.+.+.|+.+. +++ +.+.+++. +
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~-~~~~~~~~~~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKE-VAKKLKVKPGSVVL 70 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHH-HHHHcCCCCCceEE
Confidence 3577778888877 6889999999999988 46678899999887778887766 233 55556555 6
Q ss_pred eeCC-eEEEEEecCcchhhHHHHHHHHHHh
Q 030114 153 WKDG-EMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 153 ~~~G-k~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++.. +....+.|..+. +.|.+||..
T Consensus 71 ~~~~~~~~~~y~g~~~~----~~l~~fi~~ 96 (97)
T cd02981 71 FKPFEEEPVEYDGEFTE----ESLVEFIKD 96 (97)
T ss_pred eCCcccCCccCCCCCCH----HHHHHHHHh
Confidence 6653 334456776665 899999865
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.47 E-value=0.00076 Score=43.70 Aligned_cols=67 Identities=13% Similarity=0.303 Sum_probs=44.2
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH--HHHHhcCeE----EeeCCeEEEEEecCcchhh
Q 030114 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKRGNIS----IWKDGEMKSEVIGGHKAWL 170 (183)
Q Consensus 97 ~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~--~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~ 170 (183)
.+.-|+.|+.+||+.|+.....|++. ++.+-.+|+++..+ .+.+..+.. ++.||+. +.|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~---igG~----- 71 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKL---IGGS----- 71 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEE---EcCH-----
Confidence 44456679999999999999888642 46667788877643 244444433 7888864 3344
Q ss_pred HHHHHHHHH
Q 030114 171 VIEEVREMI 179 (183)
Q Consensus 171 ~~~~l~~~i 179 (183)
++|.++|
T Consensus 72 --~~l~~~l 78 (79)
T TIGR02190 72 --DELEAYL 78 (79)
T ss_pred --HHHHHHh
Confidence 4566655
No 164
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.45 E-value=0.002 Score=50.98 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=56.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC--Ch--------HHHHHhcCeE-------EeeCC-e
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK--VS--------KDLVKRGNIS-------IWKDG-E 157 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~--~~--------~~~~~~~~i~-------~~~~G-k 157 (183)
.++.-|+.||.+.|+.|..+.|.++.++++|+ +.++.|++|. .+ ...+++++|. +..+. +
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 46789999999999999999999999999995 4455555543 11 1266788888 44554 5
Q ss_pred EEEEEecCcchhhHHHHHH
Q 030114 158 MKSEVIGGHKAWLVIEEVR 176 (183)
Q Consensus 158 ~v~~~~G~~~~~~~~~~l~ 176 (183)
..---.|..+...+.+.|.
T Consensus 220 ~~pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFL 238 (248)
T ss_pred EEEEeeccCCHHHHHHHHH
Confidence 5555668888844444443
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.44 E-value=0.0013 Score=57.35 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcchhhH
Q 030114 97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKAWLV 171 (183)
Q Consensus 97 ~k~-vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~~ 171 (183)
++| -+.-|.++.||+|......+++++... +++.+-.+|....++ ++++|+|. ++.||+.+ +.|..+.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~~i~~~~~--~~g~~~~--- 187 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTVFLNGEEF--GQGRMTL--- 187 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEEEECCcEE--EecCCCH---
Confidence 445 488899999999999999999999876 789999999999998 99999999 78888754 5688776
Q ss_pred HHHHHHHH
Q 030114 172 IEEVREMI 179 (183)
Q Consensus 172 ~~~l~~~i 179 (183)
++|.+.+
T Consensus 188 -~~~~~~~ 194 (517)
T PRK15317 188 -EEILAKL 194 (517)
T ss_pred -HHHHHHH
Confidence 4554444
No 166
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.41 E-value=0.00047 Score=42.80 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=37.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
++.|+++||++|+.+.+.|.+.. +.+..+|++.+++ .+.+..+.. ++.+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFINGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 45699999999999998887653 6778889988764 233333332 7788865
No 167
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.41 E-value=0.0026 Score=45.39 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=70.8
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCC--CChh-h-hhhhHHHHHHHHHhcCC-eEEEEEEcCCChHHHHHhcCe
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCRK-C-IYLKPKLEKLAAEFDTK-LKFYYVDVNKVSKDLVKRGNI 150 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~--wC~~-C-~~~~p~l~~la~~~~~~-v~~~~vd~d~~~~~~~~~~~i 150 (183)
++.++++.+.+++.- .+++..+|-|.-. .|.+ + ......|.++|++|+++ +.|+.+|.+.... +.+.|++
T Consensus 3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence 577888888888877 4566777777532 2322 3 45677899999999999 9999999999988 8999998
Q ss_pred E--------EeeCCeEEEE-EecCcchhhHHHHHHHHHHhhC
Q 030114 151 S--------IWKDGEMKSE-VIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 151 ~--------~~~~Gk~v~~-~~G~~~~~~~~~~l~~~i~~~l 183 (183)
. ++...+.... +.|..+. +.|.+|+++++
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~----e~i~~Fv~~~l 115 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSE----DGINEFLRELS 115 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCH----HHHHHHHHHHH
Confidence 6 2222111222 4466665 88999988763
No 168
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.41 E-value=0.0008 Score=41.05 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=38.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeEE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEMK 159 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~v 159 (183)
++.|+.+||++|+.....|++ .++.+-.+|++..++ .+.+..+.. ++.||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 567999999999999887733 347888899988753 244443544 77888753
No 169
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.39 E-value=0.0011 Score=44.93 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=33.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH--HHHHhc----CeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKRG----NIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~--~~~~~~----~i~----~~~~Gk~ 158 (183)
++-|..+|||.|......|.+. ++.+..+|++..++ .+.+.+ +.+ +|-+|+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~ 71 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKL 71 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEE
Confidence 4459999999999998877654 24455666665543 122222 222 8889954
No 170
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0028 Score=46.61 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=50.5
Q ss_pred eeeccccCCCCCCCccceEecCCchhHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEc
Q 030114 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDV 137 (183)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~ 137 (183)
+..+...|++.+|....-. +. +.+ -.+++||++|| ..++|.|-...-.|++...+++. +..++.|..
T Consensus 4 l~~G~~aPdF~Lp~~~g~~-v~----Lsd------~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~ 72 (157)
T COG1225 4 LKVGDKAPDFELPDQDGET-VS----LSD------LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISP 72 (157)
T ss_pred CCCCCcCCCeEeecCCCCE-Ee----hHH------hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3455567777777542211 11 222 46889999999 58999999999999999988854 688999988
Q ss_pred CCC
Q 030114 138 NKV 140 (183)
Q Consensus 138 d~~ 140 (183)
|..
T Consensus 73 Ds~ 75 (157)
T COG1225 73 DSP 75 (157)
T ss_pred CCH
Confidence 754
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.34 E-value=0.0013 Score=41.77 Aligned_cols=62 Identities=16% Similarity=0.349 Sum_probs=42.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHh---cCeE----EeeCCeEEEEEecCcchhhHHHH
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR---GNIS----IWKDGEMKSEVIGGHKAWLVIEE 174 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~---~~i~----~~~~Gk~v~~~~G~~~~~~~~~~ 174 (183)
..|+.++|+.|+.....|++ .++.+-.+|+++++. ..+. .+.. ++.+|+. .+.|+.+ ++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v~~~g~~--~~~G~~~-----~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVIVADGDL--SWSGFRP-----DK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEEEECCCc--EEeccCH-----HH
Confidence 45888999999999988864 357788889888765 3332 2433 7777753 3556554 56
Q ss_pred HHH
Q 030114 175 VRE 177 (183)
Q Consensus 175 l~~ 177 (183)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 655
No 172
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.33 E-value=0.0035 Score=46.51 Aligned_cols=95 Identities=20% Similarity=0.393 Sum_probs=70.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 77 LEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~-vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
+.+++ .+++..+. ..+.+ +++.|..........+...++++++++.+++.|+.+|++..++ +.+.+++.
T Consensus 79 v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~ 152 (184)
T PF13848_consen 79 VPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDL 152 (184)
T ss_dssp CEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSS
T ss_pred ccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccC
Confidence 34454 55788887 56655 7887877778888999999999999998899999999998877 88899987
Q ss_pred ----Eee--CCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 ----IWK--DGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 ----~~~--~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++. +++......|..+. +.|.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~----~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITP----ESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCH----HHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCH----HHHHHHhcC
Confidence 333 33322222455555 999999874
No 173
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.31 E-value=0.0021 Score=50.43 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHH
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~ 124 (183)
+++.+|+.|+-+.||.|+.+.+.+.++.+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~ 134 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA 134 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence 56788999999999999999999887753
No 174
>PHA03050 glutaredoxin; Provisional
Probab=97.29 E-value=0.0011 Score=45.85 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=35.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC---ChH---HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK---VSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~---~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
++-|..+|||+|+.....|++..-++ + .|-.+|+++ ..+ .+.+..+.+ +|-+|+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~ 79 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTS 79 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEE
Confidence 55699999999999998887764332 2 344556554 221 233433333 8889875
No 175
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.28 E-value=0.0007 Score=48.66 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 137 (183)
..++.|+.|+.++||+|+.+.|.+.++..++ +++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeC
Confidence 5688999999999999999999999988887 5666666555
No 176
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.28 E-value=0.0014 Score=51.12 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCCCCccceEecCCch--hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH--
Q 030114 67 PDLSRPTSVELEPINDSD--HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK-- 142 (183)
Q Consensus 67 ~~~~~~~~~~~~~i~~~~--~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~-- 142 (183)
.+..+|.. .+..+++.. .+-+.. ++++|.|++|.+-.|||=..-.+.|++++++|.+.+.|+.|-+.+...
T Consensus 75 ~G~~APns-~vv~l~g~~~~~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsD 149 (237)
T PF00837_consen 75 LGGPAPNS-PVVTLDGQRSCRILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSD 149 (237)
T ss_pred CCCCCCCC-ceEeeCCCcceeHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCC
Confidence 34445532 344454332 344444 689999999999999999999999999999997766677665543210
Q ss_pred ---------------------HHHH----------------------hcCeE-----EeeCCeEEEEEecCcchhhHHHH
Q 030114 143 ---------------------DLVK----------------------RGNIS-----IWKDGEMKSEVIGGHKAWLVIEE 174 (183)
Q Consensus 143 ---------------------~~~~----------------------~~~i~-----~~~~Gk~v~~~~G~~~~~~~~~~ 174 (183)
..++ .|+.. |.+||+++. .-|.-+...-.++
T Consensus 150 gW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y-~Gg~GP~~y~~~e 228 (237)
T PF00837_consen 150 GWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVY-KGGPGPFGYSPEE 228 (237)
T ss_pred CccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEE-eCCCCCCcCCHHH
Confidence 0111 11111 778998754 3444555667799
Q ss_pred HHHHHHhh
Q 030114 175 VREMIKKF 182 (183)
Q Consensus 175 l~~~i~~~ 182 (183)
++++++++
T Consensus 229 ~r~~L~~~ 236 (237)
T PF00837_consen 229 LREWLEKY 236 (237)
T ss_pred HHHHHHhc
Confidence 99999875
No 177
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.26 E-value=0.0014 Score=42.80 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=55.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---EeeCCe----EEEEEecCcchhhHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---IWKDGE----MKSEVIGGHKAWLVIE 173 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---~~~~Gk----~v~~~~G~~~~~~~~~ 173 (183)
|+.|+.+.|+-|..+...+.++.... .+.+-.||+++++. +..+|+.. +..+|. ......+..+. +
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~~IPVl~~~~~~~~~~~~~~~~~~d~----~ 74 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGYRIPVLHIDGIRQFKEQEELKWRFDE----E 74 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCTSTSEEEETT-GGGCTSEEEESSB-H----H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcCCCCEEEEcCcccccccceeCCCCCH----H
Confidence 67799999999999999998876553 48999999998887 99999988 666661 12344566676 7
Q ss_pred HHHHHHH
Q 030114 174 EVREMIK 180 (183)
Q Consensus 174 ~l~~~i~ 180 (183)
+|.++|+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8887774
No 178
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.16 E-value=0.0035 Score=42.38 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCcEEEEEe----CCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 96 LSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 96 ~~k~vlv~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
+..+|+|.-. +||||.|......|.+. ++.+..+|++++++ .+.+..+.. +|.+|+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~ 77 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEF 77 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 4566666443 39999999998877664 35677889887764 233333322 8899864
No 179
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0027 Score=43.53 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=44.4
Q ss_pred hHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcC----eE----EeeCC
Q 030114 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGN----IS----IWKDG 156 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~----i~----~~~~G 156 (183)
....++ ...+|+| |..+||+.|+.+...|.+ ++....++.+|-+.+...+.+.+. -+ +|-+|
T Consensus 6 ~v~~~i-----~~~~VVi-fSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 6 KVRKMI-----SENPVVI-FSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred HHHHHh-----hcCCEEE-EECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 345555 4566666 999999999998777766 545677888887766533443332 11 99999
Q ss_pred eEE
Q 030114 157 EMK 159 (183)
Q Consensus 157 k~v 159 (183)
+-+
T Consensus 76 k~i 78 (104)
T KOG1752|consen 76 KFI 78 (104)
T ss_pred EEE
Confidence 753
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.07 E-value=0.0036 Score=39.53 Aligned_cols=63 Identities=16% Similarity=0.273 Sum_probs=42.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH--HHHHhcCeE----EeeCCeEEEEEecCcchhhHHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK--DLVKRGNIS----IWKDGEMKSEVIGGHKAWLVIEE 174 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~--~~~~~~~i~----~~~~Gk~v~~~~G~~~~~~~~~~ 174 (183)
++.|..+||+.|......|++. ++.+..+|+++... .+....+.. ++.+|+.+ .|. ++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~i---gg~-------~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELI---GGS-------DD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEE---eCH-------HH
Confidence 5669999999999998777642 46677778876653 233333433 88888753 343 66
Q ss_pred HHHHH
Q 030114 175 VREMI 179 (183)
Q Consensus 175 l~~~i 179 (183)
|.+++
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77765
No 181
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.06 E-value=0.0013 Score=50.43 Aligned_cols=107 Identities=16% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCccceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE
Q 030114 72 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151 (183)
Q Consensus 72 ~~~~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~ 151 (183)
|.--.+.++++..+|-+.+... ...-.++|..|-+.-+-|.++...+.-||.+| +.++|.++-..... ...+|...
T Consensus 135 p~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g--as~~F~~n 210 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG--ASDRFSLN 210 (273)
T ss_pred CccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc--chhhhccc
Confidence 3334578899999999999543 23456789999999999999999999999999 99999999776543 23444333
Q ss_pred ------EeeCCeEEEEEecCcc---hhhHHHHHHHHHHhh
Q 030114 152 ------IWKDGEMKSEVIGGHK---AWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ------~~~~Gk~v~~~~G~~~---~~~~~~~l~~~i~~~ 182 (183)
||++|+.+..++.... ..++..+|+.||+.+
T Consensus 211 ~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 211 VLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 8899988765543322 234556777777654
No 182
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.99 E-value=0.0029 Score=40.72 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=35.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHH---HHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD---LVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~---~~~~~~i~----~~~~Gk~ 158 (183)
|+.|+.+|||.|......|++. ++.+-.+|++..++. +.+..+.. ++.+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 3568899999999999888753 356677788777641 33322322 8888864
No 183
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.98 E-value=0.0041 Score=39.38 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=36.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHH---HHHhcC----eE-EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKD---LVKRGN----IS-IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~---~~~~~~----i~-~~~~Gk~ 158 (183)
++.|+.+||+.|......|++. ++.+-.+|++..++. +.+..+ +. ++.+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEE
Confidence 4668999999999998888653 467777888877542 222333 22 8888864
No 184
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.95 E-value=0.011 Score=48.45 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=60.7
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhh------HHHHHHHHH-hc-CCeEEEEEEcCCChHHHHHhc
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLK------PKLEKLAAE-FD-TKLKFYYVDVNKVSKDLVKRG 148 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~------p~l~~la~~-~~-~~v~~~~vd~d~~~~~~~~~~ 148 (183)
+..+ +..+|.+++ +..+..+|.|+.|-- .-+... ..+-+|+.+ .. .++.|+.||..+... +++++
T Consensus 36 Vi~L-neKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKL 108 (383)
T PF01216_consen 36 VIDL-NEKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKL 108 (383)
T ss_dssp CEEE--TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHH
T ss_pred eEEc-chhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhc
Confidence 4555 467899999 567888899998763 222222 223344444 32 469999999999998 99999
Q ss_pred CeE------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 149 NIS------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 149 ~i~------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
++. +|++|++++ +.|..++ +.|.+||-.
T Consensus 109 gv~E~~SiyVfkd~~~IE-ydG~~sa----DtLVeFl~d 142 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVIE-YDGERSA----DTLVEFLLD 142 (383)
T ss_dssp T--STTEEEEEETTEEEE-E-S--SH----HHHHHHHHH
T ss_pred CccccCcEEEEECCcEEE-ecCccCH----HHHHHHHHH
Confidence 999 999998876 5699999 777777654
No 185
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.94 E-value=0.0034 Score=41.72 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=37.1
Q ss_pred CCCcEEEEEe----CCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 96 LSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 96 ~~k~vlv~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
++.+|+|.-. .|||+.|+.....|++. ++.|-.+|++.+++ .+.+..+-. +|.+|+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~ 73 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGEL 73 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEE
Confidence 4566666433 27999999988877665 26677788877764 133333322 8889964
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.92 E-value=0.0094 Score=52.01 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----EeeCCeEEEEEecCcchh
Q 030114 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----IWKDGEMKSEVIGGHKAW 169 (183)
Q Consensus 97 ~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~Gk~v~~~~G~~~~~ 169 (183)
++.-+.-|.++.||+|......+.+++... +++..-.+|....++ ++++|++. ++-||+.+ +.|..+.+
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~~i~~~~~--~~g~~~~~ 189 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAVFLNGEEF--HNGRMDLA 189 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEEEECCcEE--EecCCCHH
Confidence 344588899999999999999999999887 789999999999998 89999999 77788754 56887773
No 187
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.90 E-value=0.0039 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=36.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
++-|+.+||+.|+.....|++ .++.+-.+|+++.++ .+.+..+-. +|.||+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 566899999999999887775 246677889888764 233332322 8888864
No 188
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.82 E-value=0.0054 Score=46.63 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHH
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEK 121 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~ 121 (183)
+++..++.|+.+.||+|+.+.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46889999999999999999998876
No 189
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.76 E-value=0.0051 Score=46.72 Aligned_cols=102 Identities=20% Similarity=0.364 Sum_probs=72.3
Q ss_pred ceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--Ee
Q 030114 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--IW 153 (183)
Q Consensus 76 ~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--~~ 153 (183)
++.+|..++...++. .| +.+-.|||..|...-+.|.-+...|+.++..| +.++|+++-.+.+-+..-+..-.+ +|
T Consensus 92 ~V~~ISg~dyv~EVT-~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVT-KA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATTCIPNYPESNLPTLLVY 168 (240)
T ss_pred ceeeccchHHHHHHH-hc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccccccCCCcccCCCeEEEe
Confidence 467787665555554 44 57888999999999999999999999999999 889999997765521122222233 77
Q ss_pred eCCeEEEEEecCcchh---hHHHHHHHHHH
Q 030114 154 KDGEMKSEVIGGHKAW---LVIEEVREMIK 180 (183)
Q Consensus 154 ~~Gk~v~~~~G~~~~~---~~~~~l~~~i~ 180 (183)
..|.+...++|...-+ ...++++.++-
T Consensus 169 ~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 169 HHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred ecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 8888887777765431 34466665553
No 190
>PRK10824 glutaredoxin-4; Provisional
Probab=96.74 E-value=0.0044 Score=43.27 Aligned_cols=68 Identities=24% Similarity=0.477 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHh----cCeE----
Q 030114 84 DHLDQILLRAQELSQPILIDWMA----SWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR----GNIS---- 151 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~----~~i~---- 151 (183)
+..++.+ ...+|+|.--. ||||.|+.....|.++. +.+..+|++..++ +.+. -+-+
T Consensus 6 ~~v~~~I-----~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~-~~~~l~~~sg~~TVPQ 73 (115)
T PRK10824 6 EKIQRQI-----AENPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPD-IRAELPKYANWPTFPQ 73 (115)
T ss_pred HHHHHHH-----hcCCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHH-HHHHHHHHhCCCCCCe
Confidence 3455555 45666663332 69999999998887652 3445567776654 3332 2222
Q ss_pred EeeCCeEEEEEecCcc
Q 030114 152 IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 152 ~~~~Gk~v~~~~G~~~ 167 (183)
+|-+|+- +|..+
T Consensus 74 IFI~G~~----IGG~d 85 (115)
T PRK10824 74 LWVDGEL----VGGCD 85 (115)
T ss_pred EEECCEE----EcChH
Confidence 9999975 45543
No 191
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.64 E-value=0.015 Score=40.24 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=61.4
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHH---hcCCeEEEEEEcCCChHHHHHhcCeE-------E
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE---FDTKLKFYYVDVNKVSKDLVKRGNIS-------I 152 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~---~~~~v~~~~vd~d~~~~~~~~~~~i~-------~ 152 (183)
.++...+. ..+.|..+.|+.+ ..=....+.+.++|++ +++++.|+.+|.+.... ..+.||++ .
T Consensus 6 ~e~~~~~~----~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 6 FENAEELT----EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIA 78 (111)
T ss_pred cccHHHHh----cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEE
Confidence 45566666 4566666666622 2346788899999999 99999999999999887 88999998 2
Q ss_pred eeCCeEEEE---EecCcchhhHHHHHHHHHHhhC
Q 030114 153 WKDGEMKSE---VIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 153 ~~~Gk~v~~---~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+.+.+...+ ..+..+. +.|.+|+++++
T Consensus 79 i~~~~~~~Ky~~~~~~~t~----~~i~~Fv~~~~ 108 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVP----GKLKQFVLDLH 108 (111)
T ss_pred EEcchhcCcCCCCccccCH----HHHHHHHHHHh
Confidence 222111112 2234444 88999988763
No 192
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.64 E-value=0.0097 Score=43.22 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEEcCCC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF--DTKLKFYYVDVNKV 140 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~--~~~v~~~~vd~d~~ 140 (183)
..+++|+.|+..-||+|..+.+.+.++.+++ .+++.|...++...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 5688899999999999999999999999998 67899999988544
No 193
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.025 Score=36.73 Aligned_cols=51 Identities=24% Similarity=0.458 Sum_probs=35.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh--H--HHHHhc-CeE----EeeCCe
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS--K--DLVKRG-NIS----IWKDGE 157 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~--~--~~~~~~-~i~----~~~~Gk 157 (183)
++.|..+|||.|+.....|.+ .++.+..+|++..+ + ...++. +.+ +|.+|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCE
Confidence 566899999999999877762 34667777777665 2 233444 334 888887
No 194
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.39 E-value=0.0066 Score=44.88 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=36.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 138 (183)
..++.|+.|+...||+|+.+.+.+.++.+++.+++.+..+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 5788999999999999999999999999998667777655543
No 195
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.074 Score=38.87 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh--------H--HHHH-hcCeE-----------
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS--------K--DLVK-RGNIS----------- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~--------~--~~~~-~~~i~----------- 151 (183)
-+++.++|-=.|+-|+---+ -..|+.|+++|++ ++.++.+-|+... + .+|+ .|+|+
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 47899999999999996653 3367778888865 4888888776431 1 1222 45555
Q ss_pred -------------------------------EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 -------------------------------IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 -------------------------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
+.++|+++.|+.-...++.+...|++.+
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 7789999999999888844444444444
No 196
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.13 E-value=0.039 Score=43.76 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEE
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 136 (183)
+.+.+|+.|+-+.||+|+++.+.+.++.+. +++.+..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip 154 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHIL 154 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEe
Confidence 566789999999999999999988776553 345544443
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.09 E-value=0.013 Score=38.25 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=31.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 138 (183)
|+.|+.+.||.|..+.+.++++.....+++.+....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 46799999999999999999998666677777666553
No 198
>PRK10638 glutaredoxin 3; Provisional
Probab=96.08 E-value=0.019 Score=37.32 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=35.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
++.|..+||+.|+...-.|++. ++.+..+|++..++ .+.+..+.. ++.+|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 5568899999999998777653 35667788887754 233332322 7788854
No 199
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.95 E-value=0.012 Score=45.24 Aligned_cols=43 Identities=12% Similarity=0.402 Sum_probs=35.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d 138 (183)
.+++.||.|+.-.||+|..+.|.+ +.+.+.+.+++.++.+.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 357789999999999999999876 7888888777777776653
No 200
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.87 E-value=0.062 Score=37.21 Aligned_cols=68 Identities=19% Similarity=0.368 Sum_probs=48.0
Q ss_pred hhhhhhhHHHHHHHHHhc-CCeEEEEEEcCCChHHHHHhcCeE----------Ee-eCCeEEEEEecCcchhh-HHHHHH
Q 030114 110 RKCIYLKPKLEKLAAEFD-TKLKFYYVDVNKVSKDLVKRGNIS----------IW-KDGEMKSEVIGGHKAWL-VIEEVR 176 (183)
Q Consensus 110 ~~C~~~~p~l~~la~~~~-~~v~~~~vd~d~~~~~~~~~~~i~----------~~-~~Gk~v~~~~G~~~~~~-~~~~l~ 176 (183)
..-......+.++|+.++ +++.|+.+|.++... ..+.||+. +. .++ .++. .+.+. ..+.|.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~~~~---~KY~--~~~~~~t~e~i~ 104 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRTAKG---KKYV--MEEEFSDVDALE 104 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEeCCC---CccC--CCcccCCHHHHH
Confidence 445678889999999999 699999999998876 77888875 11 122 1121 12223 448999
Q ss_pred HHHHhhC
Q 030114 177 EMIKKFV 183 (183)
Q Consensus 177 ~~i~~~l 183 (183)
+|+++++
T Consensus 105 ~F~~~f~ 111 (111)
T cd03073 105 EFLEDFF 111 (111)
T ss_pred HHHHHhC
Confidence 9998764
No 201
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.82 E-value=0.047 Score=37.58 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=58.9
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCCh---hhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCR---KCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS-- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~---~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~-- 151 (183)
+..++ .+++++.+ ..+...++ |++..|. .+....=++-++.+.+.+.+...-++-+... .+..+|++.
T Consensus 11 ~~~vd-~~~ld~~l----~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~-~L~~r~gv~~~ 83 (107)
T PF07449_consen 11 WPRVD-ADTLDAFL----AAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAER-ALAARFGVRRW 83 (107)
T ss_dssp EEEE--CCCHHHHH----HCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHH-HHHHHHT-TSS
T ss_pred Ceeec-hhhHHHHH----hCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHH-HHHHHhCCccC
Confidence 33444 66788888 45555555 5555554 4444445788898889777877777733334 599999997
Q ss_pred ----EeeCCeEEEEEecCcch
Q 030114 152 ----IWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 152 ----~~~~Gk~v~~~~G~~~~ 168 (183)
|+++|+.+..+.|..+.
T Consensus 84 PaLvf~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 84 PALVFFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp SEEEEEETTEEEEEEESSSTH
T ss_pred CeEEEEECCEEEEEecCeecc
Confidence 89999999999998875
No 202
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.81 E-value=0.14 Score=34.80 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=64.7
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh-HHHHHhcCeE-----
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-KDLVKRGNIS----- 151 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~~~~~~~~i~----- 151 (183)
..|.+-.+|..++ ...+.|+|.|..+-=.. ......+.++|+...+.-.+..|||.... ..+|+++.+.
T Consensus 4 e~i~d~KdfKKLL----RTr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 4 EDISDHKDFKKLL----RTRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred ccccchHHHHHHH----hhcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 4577788999999 56778888777664333 33445889999998888899999998743 3599999887
Q ss_pred ------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 152 ------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 152 ------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
=|+||.--..+.-..+. ..+..|++
T Consensus 79 ~~~~LkHYKdG~fHkdYdR~~t~----kSmv~Flr 109 (112)
T cd03067 79 KPVELKHYKDGDFHTEYNRQLTF----KSMVAFLR 109 (112)
T ss_pred CcchhhcccCCCccccccchhhH----HHHHHHhh
Confidence 45677543333333333 45555553
No 203
>PTZ00062 glutaredoxin; Provisional
Probab=95.68 E-value=0.061 Score=41.39 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=36.9
Q ss_pred CCCcEEEEEe----CCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE----EeeCCeE
Q 030114 96 LSQPILIDWM----ASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS----IWKDGEM 158 (183)
Q Consensus 96 ~~k~vlv~F~----a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~----~~~~Gk~ 158 (183)
+..+|+|.-- +||||.|+.+...|.+. ++.+..+|+++.++ .+.+.-+.. +|.+|+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 4566666332 37999999988777643 46677889887764 122222322 8899965
No 204
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.59 E-value=0.12 Score=45.70 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=67.2
Q ss_pred hhHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE------Ee-eC
Q 030114 84 DHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS------IW-KD 155 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~-vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~------~~-~~ 155 (183)
+++.+.+.. -.++ .++.|+.+.|..|..+...+++++.- .+++.+...|..++.+ ++++|++. ++ .+
T Consensus 355 ~~l~~~~~~---l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~-~~~~~~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 355 QQLVGIFGR---LENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPE-SETLPKITKLPTVALLDDD 429 (555)
T ss_pred HHHHHHHHh---cCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchh-hHhhcCCCcCCEEEEEeCC
Confidence 346666642 3445 57778888999999999999999854 4889998888887776 89999987 44 45
Q ss_pred CeEE-EEEecCcchhhHHHHHHHHHHhh
Q 030114 156 GEMK-SEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 156 Gk~v-~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
|+.. -++.|.... .+|..||...
T Consensus 430 ~~~~~i~f~g~P~G----~Ef~s~i~~i 453 (555)
T TIGR03143 430 GNYTGLKFHGVPSG----HELNSFILAL 453 (555)
T ss_pred CcccceEEEecCcc----HhHHHHHHHH
Confidence 6543 688899888 7777777643
No 205
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.027 Score=50.07 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=56.1
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEEcCCChHHHHHhcC-------eE-
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSKDLVKRGN-------IS- 151 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~~~~~~~~-------i~- 151 (183)
++.|.++- ..++|+++....+||--|..|... | .++|+-++.++.-++||-++-|+ +.+.|. -+
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Ym~~~q~~tG~G 107 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLYMNASQAITGQG 107 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHHHHHHHHhccCC
Confidence 45566665 789999999999999999999863 3 56777777779999999999887 555443 11
Q ss_pred -------EeeCCeEEE
Q 030114 152 -------IWKDGEMKS 160 (183)
Q Consensus 152 -------~~~~Gk~v~ 160 (183)
+-.||++..
T Consensus 108 GWPLtVfLTPd~kPFf 123 (667)
T COG1331 108 GWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCceeEEECCCCceee
Confidence 558888754
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.73 E-value=0.45 Score=32.05 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEecCCchhHHHHHHHhhh-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----
Q 030114 77 LEPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~-~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---- 151 (183)
+..|++.+++++.+ . .+..++|-|+..-=. .....|.++|+.+.+.+.|+...- +. +...+++.
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~-~~~~~~~~~~~i 70 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFD---SK-VAKKLGLKMNEV 70 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECc---HH-HHHHcCCCCCcE
Confidence 45678888899988 5 677888888876444 345578889988877787754322 23 45555555
Q ss_pred -EeeC-CeEEEEE-ecCcchhhHHHHHHHHHHhh
Q 030114 152 -IWKD-GEMKSEV-IGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 -~~~~-Gk~v~~~-~G~~~~~~~~~~l~~~i~~~ 182 (183)
++++ .+....+ .|..+. +.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~----~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSE----EELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCH----HHHHHHHHHh
Confidence 5554 3333445 555565 8999998753
No 207
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.22 E-value=0.16 Score=37.20 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCCcEEEEE-eCCCChhhhhh-hHHHHHHHHHhcC-Ce-EEEEEEcCCCh--HHHHHhcCe
Q 030114 96 LSQPILIDW-MASWCRKCIYL-KPKLEKLAAEFDT-KL-KFYYVDVNKVS--KDLVKRGNI 150 (183)
Q Consensus 96 ~~k~vlv~F-~a~wC~~C~~~-~p~l~~la~~~~~-~v-~~~~vd~d~~~--~~~~~~~~i 150 (183)
.++++||.| .+.||+.|... .+.|.+.++++.. ++ .++.|..|... ...+++.++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 345555555 58999999999 9999999998853 46 58888877542 224455544
No 208
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.13 E-value=0.47 Score=34.12 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=50.9
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--------EeeCCeEEEEEecCcchh
Q 030114 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--------IWKDGEMKSEVIGGHKAW 169 (183)
Q Consensus 98 k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--------~~~~Gk~v~~~~G~~~~~ 169 (183)
..-++.|++|.|+=|..-...++ ..++.+-.+..+.-.. +.++++|. ..-||+.++ |-.+.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~a-lK~~~gIp~e~~SCHT~VI~Gy~vE---GHVPa- 93 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLA-LKRRLGIPYEMQSCHTAVINGYYVE---GHVPA- 93 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHH-HHHhcCCChhhccccEEEEcCEEEe---ccCCH-
Confidence 34477799999999998665554 1456677777776665 88999998 778887644 66666
Q ss_pred hHHHHHHHHHHh
Q 030114 170 LVIEEVREMIKK 181 (183)
Q Consensus 170 ~~~~~l~~~i~~ 181 (183)
+.|..+++.
T Consensus 94 ---~aI~~ll~~ 102 (149)
T COG3019 94 ---EAIARLLAE 102 (149)
T ss_pred ---HHHHHHHhC
Confidence 778877764
No 209
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.90 E-value=0.15 Score=43.44 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
|+-|+.+|||+|+.....|.+. ++.+-.+|+++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~ 39 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVK 39 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChh
Confidence 6679999999999988777653 47777889987764
No 210
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=93.65 E-value=1.6 Score=30.76 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=59.4
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHH-HHh--cCCeEEEEEEcCCC----hHHHHHhcCeE----
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA-AEF--DTKLKFYYVDVNKV----SKDLVKRGNIS---- 151 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la-~~~--~~~v~~~~vd~d~~----~~~~~~~~~i~---- 151 (183)
.-+|++++ .+.+.++|.|=... |=-.-.-.|.+++ +.. .+++.++.|-+... +..++++|+|.
T Consensus 11 ~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~f 84 (126)
T PF07912_consen 11 ELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDF 84 (126)
T ss_dssp TTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-
T ss_pred ceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccC
Confidence 45799999 78899999995432 2222344677787 443 25799999988643 23599999997
Q ss_pred ----Eee-CCeEEEEE--ecCcchhhHHHHHHHHHHhh
Q 030114 152 ----IWK-DGEMKSEV--IGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ----~~~-~Gk~v~~~--~G~~~~~~~~~~l~~~i~~~ 182 (183)
+|. +.+..-++ .|..+. +.|+.|+.++
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~----~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTA----DNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-H----HHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCccH----HHHHHHHHhC
Confidence 555 45555566 565565 9999998764
No 211
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.53 E-value=0.89 Score=35.00 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCCCh-hhhhhhHHHHHHHHHhc----CCe--EEEEEEcCCC
Q 030114 96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD----TKL--KFYYVDVNKV 140 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~-~C~~~~p~l~~la~~~~----~~v--~~~~vd~d~~ 140 (183)
.+++++|.|.=+.|| -|-.+...+..+.++.. .++ .++.||-+..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD 117 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD 117 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence 799999999877776 58888887777776654 344 4555554433
No 212
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.44 Score=35.26 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=58.6
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCC--------hH---HHHHhcCeE-----------
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV--------SK---DLVKRGNIS----------- 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~--------~~---~~~~~~~i~----------- 151 (183)
-+++.++|-=-|+-|+--..--..|..|.++|++ ++.++..-|... .+ .++.+|+..
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG 111 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNG 111 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecCC
Confidence 4788888888899998888666788888888854 477777776532 11 133344332
Q ss_pred ------------------------------EeeCCeEEEEEecCcchhhHHHHHHHHH
Q 030114 152 ------------------------------IWKDGEMKSEVIGGHKAWLVIEEVREMI 179 (183)
Q Consensus 152 ------------------------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i 179 (183)
+.+||+++.|+.-..++..+...|++.+
T Consensus 112 ~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 112 DNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred CCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 7799999999887777755555555554
No 213
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.58 E-value=0.22 Score=34.06 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=32.6
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH------HHHHhcCeE--EeeCCe
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGNIS--IWKDGE 157 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~------~~~~~~~i~--~~~~Gk 157 (183)
..|+.|+|+.|+.....|++- ++.|-.+|+.+.+. .+.+.+++. +.+.|.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~ 59 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGT 59 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCch
Confidence 468899999999988666443 46666777766541 355566655 444443
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.48 E-value=0.9 Score=33.10 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=35.9
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCe-----E---EeeCCeE
Q 030114 101 LIDWMAS------WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNI-----S---IWKDGEM 158 (183)
Q Consensus 101 lv~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i-----~---~~~~Gk~ 158 (183)
|+.|+++ +|+.|+.+...|+.+ ++.|-.+|++.+++ .+.+..+- + +|-+|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEE
Confidence 3456666 999999998877654 47788899987754 24444332 2 8888864
No 215
>PHA03075 glutaredoxin-like protein; Provisional
Probab=90.35 E-value=0.64 Score=32.31 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.1
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc
Q 030114 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (183)
Q Consensus 98 k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 137 (183)
|.++|.|.-|-|+-|+.....+.++..+| .+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence 56899999999999999999997777665 4555554
No 216
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=90.09 E-value=3.3 Score=27.90 Aligned_cols=91 Identities=9% Similarity=0.209 Sum_probs=58.4
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE----E
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----I 152 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----~ 152 (183)
+.++++.+++++.+ ...+.++|-|+..--. .....|.++|+.+.+++.|+...-. . +.+.+++. +
T Consensus 2 ~~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~-~~~~~~~~~~ivl 70 (104)
T cd03069 2 SVELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q-LLEKYGYGEGVVL 70 (104)
T ss_pred ccccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H-HHHhcCCCCceEE
Confidence 34677888888888 5778888888876433 3566788899988778888554332 2 44554443 5
Q ss_pred ee------C-CeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 153 WK------D-GEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 153 ~~------~-Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++ + ......+.|..+. +.|.+||..+
T Consensus 71 ~~p~~~~~k~de~~~~y~g~~~~----~~l~~fi~~~ 103 (104)
T cd03069 71 FRPPRLSNKFEDSSVKFDGDLDS----SKIKKFIREN 103 (104)
T ss_pred EechhhhcccCcccccccCcCCH----HHHHHHHHhh
Confidence 51 1 1112235665555 8999998764
No 217
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=1.4 Score=35.94 Aligned_cols=72 Identities=17% Similarity=0.378 Sum_probs=54.2
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCC----CChhhhhhhHHHHHHHHHhc------C--CeEEEEEEcCCChHHH
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMAS----WCRKCIYLKPKLEKLAAEFD------T--KLKFYYVDVNKVSKDL 144 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~----wC~~C~~~~p~l~~la~~~~------~--~v~~~~vd~d~~~~~~ 144 (183)
+..++ .+.|...+. +..++=.+++.|.|. .|.-|+.+...+.-+++.+. + ++-|..||.++.++ +
T Consensus 42 VI~~n-~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~ 118 (331)
T KOG2603|consen 42 VIRMN-DDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-V 118 (331)
T ss_pred eEEec-Ccchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-H
Confidence 44454 556878775 213344467778774 59999999999999998752 2 58899999999998 8
Q ss_pred HHhcCeE
Q 030114 145 VKRGNIS 151 (183)
Q Consensus 145 ~~~~~i~ 151 (183)
-+.+++.
T Consensus 119 Fq~l~ln 125 (331)
T KOG2603|consen 119 FQQLNLN 125 (331)
T ss_pred HHHhccc
Confidence 8888877
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=88.97 E-value=0.61 Score=31.56 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=24.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
.-|+.++|+.|+.....|++. ++.|-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 458899999999988666553 455667777654
No 219
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=3.6 Score=31.32 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCCh---------------------------HHHHHh
Q 030114 97 SQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVS---------------------------KDLVKR 147 (183)
Q Consensus 97 ~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~---------------------------~~~~~~ 147 (183)
++.+++.|| +..-+-|--....|.+.+.++.. ++.++.+.+|..- ..+++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 477777666 56677787788888888888854 5888888887431 125555
Q ss_pred cCeE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 148 GNIS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 148 ~~i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
|++- ++++|.+.+..+...+-+...+++...|+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~id 158 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVID 158 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHH
Confidence 5554 77888877666654443333466655554
No 220
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=87.74 E-value=1.1 Score=33.38 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=27.0
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc
Q 030114 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 137 (183)
.|..|.|+.|-.+.|.+.++..+|+.++.+-.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEc
Confidence 58999999999999999999999977776666544
No 221
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=87.63 E-value=3.8 Score=29.97 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----EeeCC-eEEEEEecC-cchhhHHHHHHHHHHhh
Q 030114 115 LKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS-----IWKDG-EMKSEVIGG-HKAWLVIEEVREMIKKF 182 (183)
Q Consensus 115 ~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~-----~~~~G-k~v~~~~G~-~~~~~~~~~l~~~i~~~ 182 (183)
+...|.++|+.+.+.+.|+.+. .++ +++.+++. +++++ +....+.|. .+. +.|.+||.+.
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~-~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~----~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEE-LAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTP----EELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HH-HHHHCTCSSSEEEEEECTTTSEEEESSSTTSH----HHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHH-HHHHhCCCCCcEEEeccCCCCceecccccCCH----HHHHHHHHHh
Confidence 4567899999998789999887 344 88889887 77774 345667776 455 8999999764
No 222
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=86.85 E-value=9.2 Score=27.26 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred cceEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhh-hHHHHHHHHH-hcCCeEEEEEEcCCChHH--HHHhcCe
Q 030114 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYL-KPKLEKLAAE-FDTKLKFYYVDVNKVSKD--LVKRGNI 150 (183)
Q Consensus 75 ~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~-~p~l~~la~~-~~~~v~~~~vd~d~~~~~--~~~~~~i 150 (183)
..+.++++.++.++.+.. .....+| +-.+-||---.. +|-....... .++ =.++.|=...+.+. -++.|-.
T Consensus 16 ~Gf~eL~T~e~Vd~~~~~---~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkP-D~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALKN---KEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKP-DHLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp TT-EE--SHHHHHHHHHH-----SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS---SEEEEEETTTSHHHHHHHHHTST
T ss_pred cCccccCCHHHHHHHHhC---CCCcEEE-EEeccccccccccCHHHHHHHhCCCCC-CceEEeccCCCHHHHHHHHHhcC
Confidence 467889999999999942 3333333 556778744333 4544333332 222 24455545544432 2333322
Q ss_pred E---------EeeCCeEEEEEe----cCcchhhHHHHHHHHHHhh
Q 030114 151 S---------IWKDGEMKSEVI----GGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 151 ~---------~~~~Gk~v~~~~----G~~~~~~~~~~l~~~i~~~ 182 (183)
. +||||+.++-+. -.++.+.+.+.|...++++
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 1 999999987543 3345556667777766654
No 223
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=86.29 E-value=1.8 Score=29.91 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH------HHHHhcC--eE--EeeCCeE
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGN--IS--IWKDGEM 158 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~------~~~~~~~--i~--~~~~Gk~ 158 (183)
.-|+.++|+.|+.....|++ .++.+-.+|+.+.+. .+....+ +. +.+.|+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~ 62 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQS 62 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcc
Confidence 35889999999998866655 246677888876642 2444555 33 5555544
No 224
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=85.73 E-value=1.3 Score=30.35 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (183)
..|+.++|+.|+.....|++ .++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEecccCCc
Confidence 45889999999998866654 24667777776654
No 225
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.54 E-value=1.8 Score=30.70 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=24.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (183)
+..|+.++|+.|+.....|++- ++.|-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999987655432 4667777776554
No 226
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=84.34 E-value=13 Score=26.71 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=61.6
Q ss_pred hHHHHHHHh----hhCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEEcCCChH---------------
Q 030114 85 HLDQILLRA----QELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDTKLKFYYVDVNKVSK--------------- 142 (183)
Q Consensus 85 ~~~~~l~~a----~~~~k~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~d~~~~--------------- 142 (183)
.+.+++..| +...|+.+|+...+--..+..+-..+ +.+.+-.+.++.+..-|++....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSV 84 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHH
Confidence 356666666 67899999999998875554444322 33333344678999999887631
Q ss_pred --HHHHhcCeE-------EeeCC---eEEEEEecCcchhhHHHHHHHHHH
Q 030114 143 --DLVKRGNIS-------IWKDG---EMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 143 --~~~~~~~i~-------~~~~G---k~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
..++.++.. +.+.. +++.++.|..+.+.+...|.+.++
T Consensus 85 a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 85 AAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 122333333 33332 578899999999666666666654
No 227
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.10 E-value=2.2 Score=29.44 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
..|+.++|+.|+.....|++. ++.+-.+|+.+.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 457889999999988666543 356666777655
No 228
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=83.43 E-value=2.4 Score=31.53 Aligned_cols=44 Identities=16% Similarity=0.372 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCCCC-hhhhhhhHHHHHHHHHhc---CCeEEEEEEcCC
Q 030114 96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD---TKLKFYYVDVNK 139 (183)
Q Consensus 96 ~~k~vlv~F~a~wC-~~C~~~~p~l~~la~~~~---~~v~~~~vd~d~ 139 (183)
.+++++|.|.-+.| ..|-.+...+.++.+.++ .++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 78999999998888 568888877777776653 367888887774
No 229
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.20 E-value=2 Score=27.58 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=23.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+.|++--||.|..+...|+++. +.+-.|++...
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~S 37 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITES 37 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC------CCceeeehhhh
Confidence 5699999999988777776653 44555666655
No 230
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=82.42 E-value=14 Score=25.57 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEEcCCChH---HHHHhcCeEEeeC--C--------eEEE
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD--TKLKFYYVDVNKVSK---DLVKRGNISIWKD--G--------EMKS 160 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~d~~~~---~~~~~~~i~~~~~--G--------k~v~ 160 (183)
-....++.|--+--+.-..+.+.+.++|+++. +++.|+-||-|..|- --.+.|+|.+++. | .+=-
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 35677888999999999999999999999974 569999999999874 2345677773221 1 0111
Q ss_pred EEecCcchhhHHHHHHHHHHhhC
Q 030114 161 EVIGGHKAWLVIEEVREMIKKFV 183 (183)
Q Consensus 161 ~~~G~~~~~~~~~~l~~~i~~~l 183 (183)
+..+..+ ....++|+.+|+..|
T Consensus 99 ~m~~~~d-~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDED-LPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccc-cCcHHHHHHHHHhhC
Confidence 1212211 123488999998765
No 231
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=81.38 E-value=14 Score=25.05 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=42.5
Q ss_pred eEecCCchhHHHHHHHhhhCC-CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE
Q 030114 77 LEPINDSDHLDQILLRAQELS-QPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~-k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~ 151 (183)
+.+|++.++++..+ ... +.++|-|+..--+ .....|.++|+.+.+++.|+...-+ . +.+.+++.
T Consensus 2 v~~i~s~~ele~f~----~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~-~~~~~~~~ 66 (107)
T cd03068 2 SKQLQTLKQVQEFL----RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E-IFKSLKVS 66 (107)
T ss_pred ceEcCCHHHHHHHH----hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H-HHHhcCCC
Confidence 45678888898887 345 7777777766433 3556788899998788888554332 2 44555544
No 232
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=80.14 E-value=11 Score=30.05 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcC--C----eEEEEEEcCCC
Q 030114 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT--K----LKFYYVDVNKV 140 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~-C~~~~p~l~~la~~~~~--~----v~~~~vd~d~~ 140 (183)
.++.++|+|.-+.||. |=....++..+.++... . -.|+.||-..+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 6899999999999975 76666666555554421 1 25777776543
No 233
>PRK12559 transcriptional regulator Spx; Provisional
Probab=80.04 E-value=3.3 Score=29.46 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=23.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+..|+.|+|+.|+.....|++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4568899999999977555432 355666666544
No 234
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=3.2 Score=32.29 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEE
Q 030114 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (183)
Q Consensus 97 ~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 136 (183)
.+..++.|+..-||+|+...|.+.+..... +++.+...+
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~-~~~~~~~~~ 122 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDD-GKVRLVLRE 122 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhc-CCCceEEEE
Confidence 477899999999999999999998866666 444444443
No 235
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=79.39 E-value=8.7 Score=26.03 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=34.1
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE---------EeeCCeEEEEEecC
Q 030114 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS---------IWKDGEMKSEVIGG 165 (183)
Q Consensus 104 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~---------~~~~Gk~v~~~~G~ 165 (183)
||-.+||-|......+.+... .+.+.|+.+.-+...+ +.+.++++ +..+|+ ..+.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQA-LLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhh-HHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 788999999999887777621 2345555442222222 45566665 446776 234455
No 236
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=78.21 E-value=21 Score=31.21 Aligned_cols=84 Identities=23% Similarity=0.177 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeEEeeCCeEE-EEE
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISIWKDGEMK-SEV 162 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~~~~~Gk~v-~~~ 162 (183)
+++.+++. .-.++|-+.++.+.|..|..+...++++++-- +++.+-..+.++. .--+.+..+|+.. -++
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~~~------~p~~~~~~~~~~~~i~f 77 (517)
T PRK15317 8 TQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLDVR------KPSFSITRPGEDTGVRF 77 (517)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCCCC------CCEEEEEcCCccceEEE
Confidence 45556654 35677767777778999999999999998765 7777654332210 0112255666543 578
Q ss_pred ecCcchhhHHHHHHHHHHh
Q 030114 163 IGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 163 ~G~~~~~~~~~~l~~~i~~ 181 (183)
.|.... .++..||..
T Consensus 78 ~g~P~g----~Ef~s~i~~ 92 (517)
T PRK15317 78 AGIPMG----HEFTSLVLA 92 (517)
T ss_pred EecCcc----HHHHHHHHH
Confidence 888888 777777654
No 237
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=76.69 E-value=15 Score=22.49 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=23.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (183)
+.|+.+||+.|....-.+.+.. -.+.+..+|....+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~ 37 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKP 37 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCC
Confidence 3478899999998875554442 24566677665433
No 238
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=76.60 E-value=0.77 Score=37.37 Aligned_cols=79 Identities=11% Similarity=0.268 Sum_probs=50.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc-CCChHHHHHhcCeE-----EeeCCeEEEEEecCcchh
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV-NKVSKDLVKRGNIS-----IWKDGEMKSEVIGGHKAW 169 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~-d~~~~~~~~~~~i~-----~~~~Gk~v~~~~G~~~~~ 169 (183)
...++-+.||++|||--+...|.+.-...-+. .+....++- ...+. +..++++. ++-+-.-..++-|...-
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~vee~~~lps-v~s~~~~~~~ps~~~~n~t~~~~~~~~r~l- 151 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFAVEESQALPS-VFSSYGIHSEPSNLMLNQTCPASYRGERDL- 151 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc-ccccccHHHHhhccc-chhccccccCCcceeeccccchhhcccccH-
Confidence 36789999999999999999999988777663 232222221 11233 66677776 45555555566666554
Q ss_pred hHHHHHHHHHH
Q 030114 170 LVIEEVREMIK 180 (183)
Q Consensus 170 ~~~~~l~~~i~ 180 (183)
+.|.+|..
T Consensus 152 ---~sLv~fy~ 159 (319)
T KOG2640|consen 152 ---ASLVNFYT 159 (319)
T ss_pred ---HHHHHHHH
Confidence 55555543
No 239
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=76.52 E-value=4.3 Score=30.08 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=25.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~ 129 (183)
|..|+.+.||.|-...+.++++.++++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~ 31 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGG 31 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCC
Confidence 56789999999999999999999998433
No 240
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=75.72 E-value=24 Score=24.48 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=41.5
Q ss_pred hhhhhhHHHHHHHHHhcC-CeEEEEEEcCCChH-----------HHHHhcCeE--------EeeCCeEEEEEecCcchhh
Q 030114 111 KCIYLKPKLEKLAAEFDT-KLKFYYVDVNKVSK-----------DLVKRGNIS--------IWKDGEMKSEVIGGHKAWL 170 (183)
Q Consensus 111 ~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~~~-----------~~~~~~~i~--------~~~~Gk~v~~~~G~~~~~~ 170 (183)
.=+.....|.+-...+.. ++.++.+--+.... .+.++|++. +-|||.+..+.....+.
T Consensus 24 ~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~-- 101 (118)
T PF13778_consen 24 RYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDP-- 101 (118)
T ss_pred HHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCH--
Confidence 334444444443333433 46666663332211 478888866 77999999998888887
Q ss_pred HHHHHHHHHHh
Q 030114 171 VIEEVREMIKK 181 (183)
Q Consensus 171 ~~~~l~~~i~~ 181 (183)
++|-..|+.
T Consensus 102 --~~lf~~ID~ 110 (118)
T PF13778_consen 102 --EELFDTIDA 110 (118)
T ss_pred --HHHHHHHhC
Confidence 777777664
No 241
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.10 E-value=6.5 Score=27.94 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+..|+.++|+.|+.....|++ .++.|-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------cCCCeEEEECCCC
Confidence 345788999999997755543 2466777777654
No 242
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=73.08 E-value=38 Score=29.66 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeEEeeCCeE-EEEE
Q 030114 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISIWKDGEM-KSEV 162 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~~~~~Gk~-v~~~ 162 (183)
+++.+.+. .-.++|-+.++...|..|..+...++++++-- +++.+...+.+... .=-+.+.++|+. --++
T Consensus 8 ~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~~~-----~p~~~~~~~~~~~~i~f 78 (515)
T TIGR03140 8 AQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADTLR-----KPSFTILRDGADTGIRF 78 (515)
T ss_pred HHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCcCC-----CCeEEEecCCcccceEE
Confidence 45556664 34667766666668999999999999998765 77777554433210 001125567663 3578
Q ss_pred ecCcchhhHHHHHHHHHHh
Q 030114 163 IGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 163 ~G~~~~~~~~~~l~~~i~~ 181 (183)
.|.... .++..||..
T Consensus 79 ~g~P~g----~Ef~s~i~~ 93 (515)
T TIGR03140 79 AGIPGG----HEFTSLVLA 93 (515)
T ss_pred EecCCc----HHHHHHHHH
Confidence 888887 777777654
No 243
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.00 E-value=8.2 Score=30.67 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=27.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCe
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKL 130 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v 130 (183)
..+|+.++...+.|||.|-..+=.|--.-.+| +++
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCe
Confidence 58999999999999999998875555555566 554
No 244
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=72.27 E-value=16 Score=25.09 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=38.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCC
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (183)
-+++++||-=.|+-|+.-. --..|++|.++|++ ++.++.+-++..
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 4789999999999999998 67799999999974 699999988754
No 245
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.03 E-value=11 Score=31.59 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCChhhhhhh-HHHHHHHHHhcC---CeEEEEEEcC--CChHHHHHhcCeE-------EeeCCeEEEEEecCcchhhHHH
Q 030114 107 SWCRKCIYLK-PKLEKLAAEFDT---KLKFYYVDVN--KVSKDLVKRGNIS-------IWKDGEMKSEVIGGHKAWLVIE 173 (183)
Q Consensus 107 ~wC~~C~~~~-p~l~~la~~~~~---~v~~~~vd~d--~~~~~~~~~~~i~-------~~~~Gk~v~~~~G~~~~~~~~~ 173 (183)
|.|+.|+.-. ....++-+.+.+ .+++.-.-|- ...+.-...+||. +|++|+++.++.+..-. +
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~----~ 347 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIV----E 347 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHH----H
Confidence 3455554332 233444444432 2555555553 2223345556666 99999998876655443 4
Q ss_pred HHHHHHH
Q 030114 174 EVREMIK 180 (183)
Q Consensus 174 ~l~~~i~ 180 (183)
+|.+.|+
T Consensus 348 ~l~~~i~ 354 (360)
T PRK00366 348 ELEAEIE 354 (360)
T ss_pred HHHHHHH
Confidence 4444444
No 246
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=66.53 E-value=54 Score=28.23 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=54.6
Q ss_pred HHHHHHHhhhCCCcEEEEEeCCCChhhhhhhH-HH-HHH-HHHhcCCeEEEEEEcCCChH-HHHHhcCeE-------Eee
Q 030114 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKP-KL-EKL-AAEFDTKLKFYYVDVNKVSK-DLVKRGNIS-------IWK 154 (183)
Q Consensus 86 ~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p-~l-~~l-a~~~~~~v~~~~vd~d~~~~-~~~~~~~i~-------~~~ 154 (183)
+.++|..+ ..++.++|-|-+..-.....+.. .| ... ++..-..+..++|+...... -+..-|-+. |-+
T Consensus 8 ipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~ 86 (506)
T KOG2507|consen 8 IPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF 86 (506)
T ss_pred hHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC
Confidence 44566556 56777888788777666666652 12 111 12222335666666554421 144445444 557
Q ss_pred CCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 155 DGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 155 ~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.|.+++.+.|.... |+|..-|++
T Consensus 87 sGtpLevitg~v~a----deL~~~i~K 109 (506)
T KOG2507|consen 87 SGTPLEVITGFVTA----DELASSIEK 109 (506)
T ss_pred CCceeEEeeccccH----HHHHHHHHH
Confidence 89999999999998 666665554
No 247
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=64.22 E-value=25 Score=29.45 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=37.9
Q ss_pred ChhhhhhhHHHHHHHHH-------hcCCeEEEEEEcCCC-hH-HHHHhcCeE--------EeeCCeEEEEE-ecCcchhh
Q 030114 109 CRKCIYLKPKLEKLAAE-------FDTKLKFYYVDVNKV-SK-DLVKRGNIS--------IWKDGEMKSEV-IGGHKAWL 170 (183)
Q Consensus 109 C~~C~~~~p~l~~la~~-------~~~~v~~~~vd~d~~-~~-~~~~~~~i~--------~~~~Gk~v~~~-~G~~~~~~ 170 (183)
||.|-...=.+++++++ ++..+++.-+-|--+ |. .-...+++. +|++|+.+.+. ... .
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee----~ 346 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEE----E 346 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CST----C
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHH----H
Confidence 55555444344444443 223577887777666 32 112234444 99999998887 333 3
Q ss_pred HHHHHHHHHHhh
Q 030114 171 VIEEVREMIKKF 182 (183)
Q Consensus 171 ~~~~l~~~i~~~ 182 (183)
..++|.+.|+++
T Consensus 347 ~vd~L~~~I~~~ 358 (359)
T PF04551_consen 347 IVDELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 458888888775
No 248
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=62.45 E-value=16 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=37.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc----CCeEEEEEEcCCC
Q 030114 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD----TKLKFYYVDVNKV 140 (183)
Q Consensus 95 ~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~vd~d~~ 140 (183)
..+..+||.+...+|..|..-...|+.|..++. .++.|+.||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 368999999999999999999998888876642 4689999986543
No 249
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=62.07 E-value=47 Score=26.92 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=60.1
Q ss_pred cCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH------HHHHhcCeE--
Q 030114 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGNIS-- 151 (183)
Q Consensus 80 i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~------~~~~~~~i~-- 151 (183)
..+.+.|.+++.........+...|+.++|..-..=.....+|+++ +.++-|=-+.+.. .+++..+..
T Consensus 164 T~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~----vD~miVIGg~~SsNT~kL~eia~~~~~~t~ 239 (281)
T PF02401_consen 164 TQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKE----VDAMIVIGGKNSSNTRKLAEIAKEHGKPTY 239 (281)
T ss_dssp TS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCC----SSEEEEES-TT-HHHHHHHHHHHHCTTCEE
T ss_pred cccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhh----CCEEEEecCCCCccHHHHHHHHHHhCCCEE
Confidence 3355667777655445566666679999999988777777777654 3344444444421 377777654
Q ss_pred -----------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 -----------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 -----------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.+++.+.+.-..|..+++.+.+++.+.|++
T Consensus 240 ~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 240 HIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp EESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred EeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 566677888889999998888888888875
No 250
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.45 E-value=23 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=29.6
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEEc
Q 030114 100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDV 137 (183)
Q Consensus 100 vlv~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~ 137 (183)
.|..|+..-||.|-...+.+.++.+.+ +-++...-+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 367899999999999999999999999 32344444443
No 251
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=58.05 E-value=84 Score=24.13 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh-----------------HHHHHhcCeE------EeeCCeE
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-----------------KDLVKRGNIS------IWKDGEM 158 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-----------------~~~~~~~~i~------~~~~Gk~ 158 (183)
=.|++..|..|=.....|.+++++ +++..+...+|-.. ...++.++.. ++-||..
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~--~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~ 80 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR--PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGRE 80 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH--TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTE
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC--CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCee
Confidence 358899999999999999999998 47888888776331 1345556544 8889975
Q ss_pred EEEEecCcchhhHHHHHHHHHHh
Q 030114 159 KSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 159 v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
...|... ..+...|++
T Consensus 81 --~~~g~~~-----~~~~~ai~~ 96 (202)
T PF06764_consen 81 --HRVGSDR-----AAVEAAIQA 96 (202)
T ss_dssp --EEETT-H-----HHHHHHHHH
T ss_pred --eeeccCH-----HHHHHHHHH
Confidence 3456544 455555443
No 252
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=54.33 E-value=61 Score=21.40 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=54.7
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEEcCCChHHHHHhcCeE----Eee-CCeEEEEEecCcch
Q 030114 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNIS----IWK-DGEMKSEVIGGHKA 168 (183)
Q Consensus 98 k~vlv~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~~~~~~~~i~----~~~-~Gk~v~~~~G~~~~ 168 (183)
..++=-|.|..-+..+.....+.++-+++ .+.+.+=-||+.++|+ +++.++|- +.| .=.++.+++|-.+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 34566677888888888888888887765 4568888999999999 99999998 443 34567888998763
No 253
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=54.21 E-value=54 Score=20.79 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=41.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEEcCCChHHHHHhcCeE
Q 030114 100 ILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNIS 151 (183)
Q Consensus 100 vlv~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~~~~~~~~i~ 151 (183)
.+.-|-+..-+..+.....+.++-+++ ++.+.+=-||+.++|+ +++.++|-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~iv 54 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIV 54 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEE
Confidence 345566666678888888888888876 4579999999999999 99999987
No 254
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=53.73 E-value=31 Score=24.30 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCCChHHHHHhcCeE-------------EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 128 TKLKFYYVDVNKVSKDLVKRGNIS-------------IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 128 ~~v~~~~vd~d~~~~~~~~~~~i~-------------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
.++.+.+.|...+|..+.+.-.|. ++-||+++.. |..+. .++|.+|+.
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~--G~YPt---~eEl~~~~~ 99 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKT--GRYPT---NEELAEWLG 99 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEE--SS------HHHHHHHHT
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEe--cCCCC---HHHHHHHhC
Confidence 469999999999876444433222 7889988653 44332 278887764
No 255
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.70 E-value=19 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=16.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEKL 122 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~l 122 (183)
+..|+.+.|+.|+...-.+.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC
Confidence 3457889999999988555443
No 256
>PRK09301 circadian clock protein KaiB; Provisional
Probab=51.86 E-value=75 Score=21.70 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEEcCCChHHHHHhcCeE----EeeC-CeEEEEEecCcch
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNIS----IWKD-GEMKSEVIGGHKA 168 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~~~~~~~~i~----~~~~-Gk~v~~~~G~~~~ 168 (183)
.+..++=-|.|..-+..+.....+.++-+++ .+.+.+=-||+.++|+ +++.++|- +.|. =.++.|++|-.+.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 3456777788888888888888888887765 4568888999999999 99999998 4433 4567888998763
No 257
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=51.54 E-value=95 Score=25.39 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC-ChH---HHHHhcCeE-----
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSK---DLVKRGNIS----- 151 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~---~~~~~~~i~----- 151 (183)
.+.+.|.+++....+...-+.+.++.+.|..-..=.....+|+++. + +-++--+-.. +.. .+|+..+..
T Consensus 166 ~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v-D-~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie 243 (298)
T PRK01045 166 LSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA-D-LVIVVGSKNSSNSNRLREVAEEAGAPAYLID 243 (298)
T ss_pred CcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC-C-EEEEECCCCCccHHHHHHHHHHHCCCEEEEC
Confidence 3456677766544334344444558999999888788888888764 2 2222222222 111 367776643
Q ss_pred --------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 --------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 --------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.+++-+.+.-..|..++..+.+++...|+.
T Consensus 244 ~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 244 DASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred ChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 456666778888999998888888877764
No 258
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=50.26 E-value=21 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=23.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+..|+.|.|+.|++....|++- ++.|-.+|+-+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhcC
Confidence 3468899999999877555432 355666666544
No 259
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=48.63 E-value=16 Score=21.99 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=21.0
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEc
Q 030114 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDV 137 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~ 137 (183)
.|+.++|+.|+...-.+.... -.+....++.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcC----CCceEEEeec
Confidence 477889999999887765552 2344555654
No 260
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=46.62 E-value=17 Score=21.14 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=21.6
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
-|+.++|+.|....-.++... -.+....++.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~----i~~~~~~~~~~~~ 36 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKG----LPYELVPVDLGEG 36 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcC----CCcEEEEeCCCCC
Confidence 477899999998876665542 2344555554433
No 261
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=43.92 E-value=61 Score=27.03 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHH----HHHHHHhc---CCeEEEEEEc--CCChHHHHHhcCeE--------EeeCCeE
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKL----EKLAAEFD---TKLKFYYVDV--NKVSKDLVKRGNIS--------IWKDGEM 158 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l----~~la~~~~---~~v~~~~vd~--d~~~~~~~~~~~i~--------~~~~Gk~ 158 (183)
+-+...++|-| ||.|-...-.+ .++.+.+. ..+++.-+-| +-.-+.....++|. +|++|+.
T Consensus 253 glR~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~ 330 (361)
T COG0821 253 GLRSRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEI 330 (361)
T ss_pred CccccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeE
Confidence 34444455544 66665544333 33333332 2244444433 33333234455665 9999999
Q ss_pred EEEEecCcchhhHHHHHHHHHHh
Q 030114 159 KSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 159 v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+.++.+..-. ++|...+++
T Consensus 331 ~~~~~~~~~~----eel~~~i~~ 349 (361)
T COG0821 331 IKKLPEEDIV----EELEALIEA 349 (361)
T ss_pred EEecChhhHH----HHHHHHHHH
Confidence 9987776655 555555443
No 262
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=43.67 E-value=21 Score=22.22 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=15.4
Q ss_pred EEEeCCCChhhhhhhHHHHHH
Q 030114 102 IDWMASWCRKCIYLKPKLEKL 122 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~l 122 (183)
..++.++|+.|.+..-.+.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 346778999999877666544
No 263
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=43.20 E-value=25 Score=21.20 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=22.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
..|+.++|+.|+...-.+++.. =.+....+|....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g----i~~~~~~v~~~~~ 36 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG----VSVEIIDVDPDNP 36 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC----CccEEEEcCCCCC
Confidence 3577899999999876664442 2344555555443
No 264
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=40.60 E-value=1.1e+02 Score=20.31 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=51.8
Q ss_pred hhHHHHHHHhhhCCCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeEEeeCCeE-EEE
Q 030114 84 DHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISIWKDGEM-KSE 161 (183)
Q Consensus 84 ~~~~~~l~~a~~~~k~vlv-~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~~~~~Gk~-v~~ 161 (183)
+++...+. .-.+||.+ .|..+. ..|..+...+++++.-- +++.+-..+.+.. .--+.+..+|+. --+
T Consensus 8 ~qL~~~f~---~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~~------~P~~~i~~~~~~~gIr 76 (94)
T cd02974 8 QQLKAYLE---RLENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDER------KPSFSINRPGEDTGIR 76 (94)
T ss_pred HHHHHHHH---hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCCC------CCEEEEecCCCcccEE
Confidence 45555554 23455544 555545 99999999999998765 7776655443220 001115556533 258
Q ss_pred EecCcchhhHHHHHHHHHHhh
Q 030114 162 VIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 162 ~~G~~~~~~~~~~l~~~i~~~ 182 (183)
+.|.... .++..+|...
T Consensus 77 F~GiP~G----hEf~Slilai 93 (94)
T cd02974 77 FAGIPMG----HEFTSLVLAL 93 (94)
T ss_pred EEecCCc----hhHHHHHHHh
Confidence 8899888 8888887654
No 265
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=39.37 E-value=26 Score=21.20 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=14.9
Q ss_pred EEeCCCChhhhhhhHHHHHH
Q 030114 103 DWMASWCRKCIYLKPKLEKL 122 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~l 122 (183)
.++.++|+.|+...-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 46789999999877665443
No 266
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=38.91 E-value=1.6e+02 Score=22.93 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=23.0
Q ss_pred CChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHH
Q 030114 108 WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDL 144 (183)
Q Consensus 108 wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~ 144 (183)
.|+-|+.+.-.|. .+ +..+.+-.||+...|+.+
T Consensus 20 dcpf~qr~~m~L~---~k-~~~f~vttVd~~~kp~~f 52 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LK-GVPFKVTTVDLSRKPEWF 52 (221)
T ss_pred CChhHHHHHHHHH---Hc-CCCceEEEeecCCCcHHH
Confidence 4777777665554 22 236889999999988744
No 267
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=38.17 E-value=49 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=21.7
Q ss_pred ChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh
Q 030114 109 CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS 141 (183)
Q Consensus 109 C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~ 141 (183)
||.|+.+..++.+ +++++.++..|-....
T Consensus 157 CGaC~ewL~KIAe----~np~f~v~mFd~t~c~ 185 (193)
T PF14421_consen 157 CGACKEWLRKIAE----ANPDFRVYMFDDTRCR 185 (193)
T ss_pred chHHHHHHHHHHH----hCCCeEEEEecCCCcc
Confidence 9999887655544 6688999998876553
No 268
>PRK10026 arsenate reductase; Provisional
Probab=37.15 E-value=58 Score=23.47 Aligned_cols=34 Identities=3% Similarity=-0.054 Sum_probs=23.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+..|+.|.|..|++....|++- ++.|-.+|+-+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~------gi~~~~~d~~~~ 37 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS------GTEPTIIHYLET 37 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCcEEEeeeCC
Confidence 4567889999999988666443 355556665444
No 269
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.06 E-value=2.3e+02 Score=23.01 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCC-ChH---HHHHhcCeE-----
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNK-VSK---DLVKRGNIS----- 151 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~-~~~---~~~~~~~i~----- 151 (183)
.+.+.|..++........-+ .++.+.|..-..=.....+|+++. + +-++--+-+. +.. .+|+..+..
T Consensus 167 ~~~~~~~~iv~~l~~~~~~~--~v~~TIC~aT~~RQ~a~~~La~~v-D-~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie 242 (281)
T PRK12360 167 IIPELWEDILNVIKLKSKEL--VFFNTICSATKKRQESAKELSKEV-D-VMIVIGGKHSSNTQKLVKICEKNCPNTFHIE 242 (281)
T ss_pred CcHHHHHHHHHHHHHhCccc--ccCCCcchhhhhHHHHHHHHHHhC-C-EEEEecCCCCccHHHHHHHHHHHCCCEEEEC
Confidence 35666777665442322222 357999999888888888888664 3 2222222222 111 367776653
Q ss_pred --------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 --------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 --------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.|++-+.+.-..|..++..+.+++.+.|++
T Consensus 243 ~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~ 280 (281)
T PRK12360 243 TADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKN 280 (281)
T ss_pred ChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 556666778888999998888888887764
No 270
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=35.68 E-value=85 Score=20.39 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=36.6
Q ss_pred EeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEEcCCChHHHHHhcCeE
Q 030114 104 WMASWCRKCIYLKPKLEKLAAEF-DTKLKFYYVDVNKVSKDLVKRGNIS 151 (183)
Q Consensus 104 F~a~wC~~C~~~~p~l~~la~~~-~~~v~~~~vd~d~~~~~~~~~~~i~ 151 (183)
|-+..-+........+..+.+.+ ++.+.+--||+.++|+ +++.++|-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~iv 50 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIV 50 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEE
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCee
Confidence 34444556677777888888875 4579999999999998 89998886
No 271
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=34.78 E-value=57 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=23.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
..|+.|.|..|++....|++- ++.+-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccCC
Confidence 458899999999988666542 455666776555
No 272
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.60 E-value=53 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.7
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 030114 101 LIDWMASWCRKCIYLKPKLEK 121 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~ 121 (183)
+..|+.|-|..|+.....|++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456889999999998866654
No 273
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=33.28 E-value=88 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.1
Q ss_pred EeeCCeEEEEEecCcchhhHHHHHHHHHH
Q 030114 152 IWKDGEMKSEVIGGHKAWLVIEEVREMIK 180 (183)
Q Consensus 152 ~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~ 180 (183)
++++|++.....|..+. +++.++|+
T Consensus 131 lDK~G~V~F~k~G~Ls~----~Ev~qVi~ 155 (160)
T PF09695_consen 131 LDKQGKVQFVKEGALSP----AEVQQVIA 155 (160)
T ss_pred EcCCccEEEEECCCCCH----HHHHHHHH
Confidence 88999999999999998 77776664
No 274
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=32.77 E-value=2.2e+02 Score=21.50 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=22.7
Q ss_pred CCCcEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcCCC
Q 030114 96 LSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVNKV 140 (183)
Q Consensus 96 ~~k~vlv~F~a-~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d~~ 140 (183)
.+++|++.||- ..-|-|-...=-|..-+++++. ...++.+..|..
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s 135 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDS 135 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCch
Confidence 67789998882 2333444333233333333322 355666666543
No 275
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=32.42 E-value=39 Score=20.46 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC
Q 030114 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 138 (183)
.|+.++|+.|+...-.+++.. -.+....+|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~g----i~~e~~~i~~~ 34 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALG----LELNLKEVNLM 34 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcC----CCCEEEEecCc
Confidence 478899999997776555542 24556666653
No 276
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=32.13 E-value=2.1e+02 Score=23.23 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=61.5
Q ss_pred CCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCCh-H---HHHHhcCeE-----
Q 030114 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVS-K---DLVKRGNIS----- 151 (183)
Q Consensus 81 ~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~-~---~~~~~~~i~----- 151 (183)
.+.+.|.+++....+.....-+.++.+.|..-+.=.....+|+++. + +-++--.-...+ . .+|+..+..
T Consensus 164 ~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v-D-~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie 241 (280)
T TIGR00216 164 LSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV-D-LMIVIGGKNSSNTTRLYEIAEEHGPPSYLIE 241 (280)
T ss_pred CcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC-C-EEEEECCCCCchHHHHHHHHHHhCCCEEEEC
Confidence 3456677766443222211334567999999988888888888764 2 222222222211 1 367776643
Q ss_pred --------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 152 --------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 152 --------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
.|++.+.+.-..|..+++.+.+++.+.|++
T Consensus 242 ~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~ 279 (280)
T TIGR00216 242 TAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKE 279 (280)
T ss_pred ChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 556667788888999998888888877764
No 277
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=31.94 E-value=36 Score=21.30 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=10.2
Q ss_pred CChhhhhhhHHHHHHHHH
Q 030114 108 WCRKCIYLKPKLEKLAAE 125 (183)
Q Consensus 108 wC~~C~~~~p~l~~la~~ 125 (183)
.|..|. ..+....++++
T Consensus 5 yC~~C~-y~~Ra~~l~q~ 21 (72)
T TIGR02174 5 YCGSCG-YKPRAAWLKQE 21 (72)
T ss_pred ECCCCC-ChHHHHHHHHH
Confidence 488888 45555444444
No 278
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=31.12 E-value=32 Score=18.82 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=22.6
Q ss_pred HHHhcCeE------EeeCCeEEEEEecCcchhhHHHHHHHHHHh
Q 030114 144 LVKRGNIS------IWKDGEMKSEVIGGHKAWLVIEEVREMIKK 181 (183)
Q Consensus 144 ~~~~~~i~------~~~~Gk~v~~~~G~~~~~~~~~~l~~~i~~ 181 (183)
+++.++|. +.++|.......|.. .-...++|.+++++
T Consensus 7 ~a~~lgis~~ti~~~~~~g~i~~~~~g~~-~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 7 AAEYLGVSKDTVYRLIHEGELPAYRVGRH-YRIPREDVDEYLEQ 49 (49)
T ss_pred HHHHHCCCHHHHHHHHHcCCCCeEEeCCe-EEEeHHHHHHHHhC
Confidence 67777777 556676444444532 23455888888764
No 279
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.34 E-value=2.4e+02 Score=22.13 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=35.2
Q ss_pred ChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeEEeeCCeEEEEEecCcc
Q 030114 109 CRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISIWKDGEMKSEVIGGHK 167 (183)
Q Consensus 109 C~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~~~~~Gk~v~~~~G~~~ 167 (183)
=.+|..++..+++++++++..+.++-=|++-..- -..+ |--+|+|+++++ |...
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~--YsD~-IVAlK~G~vv~~--G~~~ 221 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASC--YSDH-IVALKNGKVVKQ--GSPD 221 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh--hhhh-eeeecCCEEEec--CCHH
Confidence 3789999999999999996556666656653321 1111 226699988763 5443
No 280
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.19 E-value=61 Score=27.02 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=31.5
Q ss_pred eCCCChhhhhhh-HHHHHHHHHh---cCCeEEEEEEcCCC--hHHHHHhcCeE--------EeeCCeEEEEEecC
Q 030114 105 MASWCRKCIYLK-PKLEKLAAEF---DTKLKFYYVDVNKV--SKDLVKRGNIS--------IWKDGEMKSEVIGG 165 (183)
Q Consensus 105 ~a~wC~~C~~~~-p~l~~la~~~---~~~v~~~~vd~d~~--~~~~~~~~~i~--------~~~~Gk~v~~~~G~ 165 (183)
.=|.|+.|.--. ...+++.+.+ +..+++.-+-|--+ -+.-...++|. +|++|+++.++.+.
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~~ 335 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPET 335 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCHH
Confidence 446677665332 2333333333 33466665555443 22222334444 99999987665543
No 281
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=28.88 E-value=59 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=23.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 102 IDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 102 v~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
..|+.|.|..|++....|++- ++.|-.+|+-+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEecccC
Confidence 458899999999987555432 455666777555
No 282
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=27.07 E-value=1.9e+02 Score=19.11 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=29.6
Q ss_pred EecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEE
Q 030114 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVD 136 (183)
Q Consensus 78 ~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd 136 (183)
.++.+.+++.. + ..++..||-|+.+- =......|+++|..+++...|+..-
T Consensus 2 kef~~~~eL~~-i----d~~kr~iIgYF~~~---~~~eY~~f~kvA~~lr~dC~F~v~~ 52 (91)
T cd03070 2 KEFRNLDELNN-V----DRSKRNIIGYFESK---DSDEYDNFRKVANILRDDCSFLVGF 52 (91)
T ss_pred ceecCHHHHHh-h----CcCCceEEEEEcCC---CChhHHHHHHHHHHHhhcCeEEEEe
Confidence 35666666766 3 35555555555441 1123346788998887776555443
No 283
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=2.9e+02 Score=21.00 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=23.9
Q ss_pred hCCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 95 ELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 95 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
..++.|++.|| -.+---|--..-.|...+.++.. +..++.+.+|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D 76 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD 76 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc
Confidence 46788888887 34444453344455555555532 3344444443
No 284
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.43 E-value=1.4e+02 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=24.4
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH------HHHHhcC
Q 030114 104 WMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK------DLVKRGN 149 (183)
Q Consensus 104 F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~------~~~~~~~ 149 (183)
|+.+-|..|++....|++ .++.+-.+|+.+.+- .+.+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~------~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE------NGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH------TT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHH------cCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 577899999998876654 346777789877541 3555555
No 285
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=26.03 E-value=3.3e+02 Score=21.40 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=33.5
Q ss_pred hCCCcEEEEEeCCC-Chh-hhhhhHHHHHHHHHh---cC-CeEEEEEEcCCChH---HHHHhcCeE
Q 030114 95 ELSQPILIDWMASW-CRK-CIYLKPKLEKLAAEF---DT-KLKFYYVDVNKVSK---DLVKRGNIS 151 (183)
Q Consensus 95 ~~~k~vlv~F~a~w-C~~-C~~~~p~l~~la~~~---~~-~v~~~~vd~d~~~~---~~~~~~~i~ 151 (183)
+-++||-|.+|.+- =++ =....+.++++-++| .+ ++.+-.+|.+..+. ..+.++||.
T Consensus 22 ~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~ 87 (271)
T PF09822_consen 22 SLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQ 87 (271)
T ss_pred hCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCC
Confidence 34668877777664 111 233334444444444 24 89999999987765 233447766
No 286
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=3.3e+02 Score=21.35 Aligned_cols=67 Identities=24% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHh-cCeE---EeeCCeEEEEEecCcchhhHHHHHHHH
Q 030114 103 DWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKR-GNIS---IWKDGEMKSEVIGGHKAWLVIEEVREM 178 (183)
Q Consensus 103 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~-~~i~---~~~~Gk~v~~~~G~~~~~~~~~~l~~~ 178 (183)
.|.-..|..|-.+...+++-. .-++++|+ |+...+. ++-+ +-++ +|+||+.+. .+..++ ++|+..
T Consensus 15 I~~HktC~ssy~Lf~~L~nkg--ll~~Vkii--~a~~p~f-~~~~~~V~SvP~Vf~DGel~~--~dpVdp----~~ies~ 83 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENKG--LLGKVKII--DAELPPF-LAFEKGVISVPSVFIDGELVY--ADPVDP----EEIESI 83 (265)
T ss_pred EEEecchHHHHHHHHHHHhcC--CCCCceEE--EcCCChH-HHhhcceeecceEEEcCeEEE--cCCCCH----HHHHHH
Confidence 355567888877665554310 11566664 4455554 3434 5455 999999754 344555 555555
Q ss_pred HH
Q 030114 179 IK 180 (183)
Q Consensus 179 i~ 180 (183)
++
T Consensus 84 ~~ 85 (265)
T COG5494 84 LS 85 (265)
T ss_pred Hc
Confidence 43
No 287
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.74 E-value=3.9e+02 Score=21.87 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=41.2
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhH----HHHHHHHHhcCCeEEEEEEcC
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKP----KLEKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p----~l~~la~~~~~~v~~~~vd~d 138 (183)
...+.+..++.+.+.++.+.+.|.+|..++| |+.-....| ...++|-+- +-+.++.+|-.
T Consensus 181 ~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sP-C~~~~~~~~~~~~~~~klAvet-g~~plye~~~g 244 (299)
T PRK11865 181 TASIGYPEDFMEKVKKAKEVEGPAYIQVLQP-CPTGWGFPPEKTIEIGRLAVET-GYWPLFEIENG 244 (299)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhc-CceeEEEEECC
Confidence 3455677888888888878889999999998 555443344 335555553 45777777654
No 288
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=24.68 E-value=45 Score=29.80 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=39.9
Q ss_pred chhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEEcCCChH
Q 030114 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK-L--EKLAAEFDTKLKFYYVDVNKVSK 142 (183)
Q Consensus 83 ~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~la~~~~~~v~~~~vd~d~~~~ 142 (183)
.+.|+++- ..++|+++...-+-|--|..|... | ++.++.+.+++.-++||-++-|+
T Consensus 102 qeaf~kar----~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPD 160 (786)
T KOG2244|consen 102 QEAFNKAR----AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPD 160 (786)
T ss_pred HHHHHHHH----hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCc
Confidence 34555555 789999999999999999988752 3 44666665666666666666665
No 289
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=2.4e+02 Score=19.29 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhCCCcEEEEE-eCC---CChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE--------E
Q 030114 85 HLDQILLRAQELSQPILIDW-MAS---WCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS--------I 152 (183)
Q Consensus 85 ~~~~~l~~a~~~~k~vlv~F-~a~---wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~--------~ 152 (183)
.+++.+ ...+|++.. .+| -||-...... +.... +-+.|..||+=.+++ +.+...-. +
T Consensus 7 ~I~~~i-----~~n~VvLFMKGtp~~P~CGFS~~~vq----iL~~~-g~v~~~~vnVL~d~e-iR~~lk~~s~WPT~PQL 75 (105)
T COG0278 7 RIQKQI-----KENPVVLFMKGTPEFPQCGFSAQAVQ----ILSAC-GVVDFAYVDVLQDPE-IRQGLKEYSNWPTFPQL 75 (105)
T ss_pred HHHHHh-----hcCceEEEecCCCCCCCCCccHHHHH----HHHHc-CCcceeEEeeccCHH-HHhccHhhcCCCCCcee
Confidence 345555 445555533 444 4554444333 33333 228899999988876 54433222 8
Q ss_pred eeCCeEEEEEecCcc
Q 030114 153 WKDGEMKSEVIGGHK 167 (183)
Q Consensus 153 ~~~Gk~v~~~~G~~~ 167 (183)
|-+|+- +|.-+
T Consensus 76 yi~GEf----vGG~D 86 (105)
T COG0278 76 YVNGEF----VGGCD 86 (105)
T ss_pred eECCEE----eccHH
Confidence 999964 56543
No 290
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=24.52 E-value=91 Score=21.04 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=35.7
Q ss_pred EeCCCChhhhhhh-------HHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeEEeeCCeEEEEEecCcch
Q 030114 104 WMASWCRKCIYLK-------PKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISIWKDGEMKSEVIGGHKA 168 (183)
Q Consensus 104 F~a~wC~~C~~~~-------p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~~~~~Gk~v~~~~G~~~~ 168 (183)
|....||.|..+. ...+.....| .++..+ +|-+ ...+++..+|.=+..|.---+..|..+.
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f-~G~i~i-~dP~--~SwVAk~l~i~~~~pG~YAi~V~g~lp~ 85 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNF-EGIIAL-MDPE--KSWVARWQRIDKFVPGIYAISVSGRLPE 85 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCc-ceEEEE-ECCc--hhHHHHHhCCCCCCCCeEEEEecCcCCH
Confidence 8889999996322 1222233344 222222 2333 3348999988756778766677788773
No 291
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=23.51 E-value=1.9e+02 Score=21.19 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~d 138 (183)
.++-+.+.++++.++-|..+.-.++.+|+.+.+ ++.+-.++..
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 356678889999999999999999999999966 6666666544
No 292
>PRK10853 putative reductase; Provisional
Probab=22.31 E-value=1e+02 Score=21.26 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCC
Q 030114 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKV 140 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~ 140 (183)
+..|+.|.|..|++....|++- ++.+-.+|+-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehccC
Confidence 3457889999999988666532 455566666544
No 293
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=21.82 E-value=5e+02 Score=22.02 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=51.8
Q ss_pred eEecCCchhHHHHHHHhhhCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChHHHHHhcCeE-----
Q 030114 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNIS----- 151 (183)
Q Consensus 77 ~~~i~~~~~~~~~l~~a~~~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~~~~~~~~i~----- 151 (183)
+..|++...+...-. -...+-||-|+.+--+. -...|++.|+.+.+-++|+.+ -++. ++++++..
T Consensus 148 VeiIn~~~e~~~Fe~---ied~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAt---fd~~-vAk~L~lK~nev~ 217 (383)
T PF01216_consen 148 VEIINNKHELKAFER---IEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFAT---FDKK-VAKKLGLKLNEVD 217 (383)
T ss_dssp EEEE-SHHHHHHHHH-----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE----SHH-HHHHHT-STT-EE
T ss_pred hhhhcChhhhhhhhh---cccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEE---ecch-hhhhcCcccccee
Confidence 556777766654432 13467788777764332 234678899999888888874 3444 77777665
Q ss_pred EeeC--CeEEEEEecCcchhhHHHHHHHHHHhh
Q 030114 152 IWKD--GEMKSEVIGGHKAWLVIEEVREMIKKF 182 (183)
Q Consensus 152 ~~~~--Gk~v~~~~G~~~~~~~~~~l~~~i~~~ 182 (183)
++.- .+++..-.... ..++|.+||++|
T Consensus 218 fyepF~~~pi~ip~~p~----~e~e~~~fi~~h 246 (383)
T PF01216_consen 218 FYEPFMDEPITIPGKPY----TEEELVEFIEEH 246 (383)
T ss_dssp EE-TTSSSEEEESSSS------HHHHHHHHHHT
T ss_pred eeccccCCCccCCCCCC----CHHHHHHHHHHh
Confidence 4432 33433222223 348999999876
No 294
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.76 E-value=2.6e+02 Score=18.67 Aligned_cols=60 Identities=20% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCChhhhhhhH------HHHH-HHHHhcCC-eEEEEEEcCCChHH-----HHHhcCeE------EeeCCeEEEEEecCcc
Q 030114 107 SWCRKCIYLKP------KLEK-LAAEFDTK-LKFYYVDVNKVSKD-----LVKRGNIS------IWKDGEMKSEVIGGHK 167 (183)
Q Consensus 107 ~wC~~C~~~~p------~l~~-la~~~~~~-v~~~~vd~d~~~~~-----~~~~~~i~------~~~~Gk~v~~~~G~~~ 167 (183)
--|..|..+-. -|+. +.++|.+. +.|-.||+...++. ++++..-. +.-||+++.. |...
T Consensus 7 ~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E--Gnp~ 84 (93)
T PF07315_consen 7 VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE--GNPQ 84 (93)
T ss_dssp S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE--SS--
T ss_pred ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec--CCcc
Confidence 34888876432 2322 44567554 99999999887541 22221111 7789998774 6644
Q ss_pred h
Q 030114 168 A 168 (183)
Q Consensus 168 ~ 168 (183)
-
T Consensus 85 L 85 (93)
T PF07315_consen 85 L 85 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 295
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.72 E-value=35 Score=24.65 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.8
Q ss_pred CChhhhhhhHHH
Q 030114 108 WCRKCIYLKPKL 119 (183)
Q Consensus 108 wC~~C~~~~p~l 119 (183)
-||+|+++.|.|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 599999999977
No 296
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=3.4e+02 Score=20.02 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcC
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVN 138 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d 138 (183)
+++.++.-|=+=.-|-|......|.+.+.++ ++..++.|..|
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-~~~~Vl~IS~D 85 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKL-GNTVVLCISMD 85 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhcc-CCcEEEEEeCC
Confidence 4455666666778899999999999999998 55666666665
No 297
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.49 E-value=35 Score=24.63 Aligned_cols=12 Identities=33% Similarity=0.658 Sum_probs=10.8
Q ss_pred CChhhhhhhHHH
Q 030114 108 WCRKCIYLKPKL 119 (183)
Q Consensus 108 wC~~C~~~~p~l 119 (183)
-||+|+++.|.|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 599999999977
No 298
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.45 E-value=3.8e+02 Score=20.59 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEEcCCChH---HHHHhcCeE--EeeCCeE
Q 030114 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSK---DLVKRGNIS--IWKDGEM 158 (183)
Q Consensus 96 ~~k~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~d~~~~---~~~~~~~i~--~~~~Gk~ 158 (183)
...--+..|....|++|......+.. -+..+.++-|+...+.. ..+...+|. ..++|++
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~I 170 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQI 170 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCee
Confidence 44555666888999999988766622 22468899998544432 355666666 4445544
No 299
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=21.17 E-value=1.1e+02 Score=21.41 Aligned_cols=56 Identities=13% Similarity=0.364 Sum_probs=37.5
Q ss_pred CCChhhhhhhHHHHHHHHHhc----C---CeEEEEEEcCCChHHHHHhcCeE---EeeCCeEEEEEecC
Q 030114 107 SWCRKCIYLKPKLEKLAAEFD----T---KLKFYYVDVNKVSKDLVKRGNIS---IWKDGEMKSEVIGG 165 (183)
Q Consensus 107 ~wC~~C~~~~p~l~~la~~~~----~---~v~~~~vd~d~~~~~~~~~~~i~---~~~~Gk~v~~~~G~ 165 (183)
.-|..|......+.++.+.++ . .+.+-++.++... ++..+ +. +.-||+.++...|.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~--~~~~~-~~S~~I~inG~piE~~l~~ 78 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE--FARQP-LESPTIRINGRPIEDLLGA 78 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH--Hhhcc-cCCCeeeECCEehhHhhCC
Confidence 489999988877766665532 2 4677777766543 56555 33 78888887665554
No 300
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.87 E-value=1e+02 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=26.3
Q ss_pred EEEEeCCCChhhhhhh--HHHHHHHHHhc-CCeEEEEEEcCC
Q 030114 101 LIDWMASWCRKCIYLK--PKLEKLAAEFD-TKLKFYYVDVNK 139 (183)
Q Consensus 101 lv~F~a~wC~~C~~~~--p~l~~la~~~~-~~v~~~~vd~d~ 139 (183)
...|.+..||||+.-. +.+.++-+..+ ++|.++..|...
T Consensus 73 ~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~ 114 (420)
T COG3581 73 DAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSEN 114 (420)
T ss_pred cEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccc
Confidence 4445566999999654 44555555554 579999999443
No 301
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=2.6e+02 Score=21.28 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=48.0
Q ss_pred eeeccccCCCCCCCccceEecCCchhHHHHHHHhhhCCCcEEEEEe--CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEE
Q 030114 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM--ASWCRKCIYLKPKLEKLAAEFDT-KLKFYYVD 136 (183)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~a~~~~k~vlv~F~--a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd 136 (183)
++.+...|.+.+.+... .=.|.+.+ +.-|.|.|. |..-|-|--....+.+++-++.. +++.+...
T Consensus 6 l~lgd~~PNfea~Tt~g------~i~fhd~~------gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS 73 (224)
T KOG0854|consen 6 LRLGDTVPNFEADTTVG------KIKFHDYL------GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALS 73 (224)
T ss_pred ccccCcCCCcccccccc------ceehhhhc------ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEee
Confidence 44555666666654432 22355554 567778786 56788999999999999988854 59999998
Q ss_pred cCCC
Q 030114 137 VNKV 140 (183)
Q Consensus 137 ~d~~ 140 (183)
+|..
T Consensus 74 ~d~v 77 (224)
T KOG0854|consen 74 VDDV 77 (224)
T ss_pred hhhH
Confidence 8754
Done!