BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030115
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I + AG+ CV++ LR K D+ + V A F +GA + +G
Sbjct: 126 AKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLAYKAG 171
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 43 PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
P ++AI T G G F+ M D + L TP P + + +Q +A P
Sbjct: 43 PGKSAISGVTGFALGGVFGLFMASMAYD--TPLHTPAPVGAGPGAGIPGAPTLQQMADLP 100
Query: 103 LVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAF 146
L Q A+NF I + +G+ C ++ LR K DL + V A +G
Sbjct: 101 LKQQIKIQFADMGRRAYSSAKNFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGL 160
Query: 147 SLVSG 151
+ SG
Sbjct: 161 AYKSG 165
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 23/125 (18%)
Query: 43 PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
P +AAI T G G F+ M D P P L +V+ +A P
Sbjct: 43 PGKAAISGVTGFALGGVFGLFMASMAYDTPLHTPAPTNAPGLP-------NKVKELADLP 95
Query: 103 LVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAF 146
L Q A+NF I + +G+ CV++ LR K D+ + V A +G
Sbjct: 96 LKQQIKIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGL 155
Query: 147 SLVSG 151
+ SG
Sbjct: 156 AYKSG 160
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQ 105
A A + G +G GV T + +++ P P A + + +
Sbjct: 69 CAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAREVLKDMGQRG---MSY 125
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
A+NFA++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 126 AKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGL 172
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFA 110
A + G +G GV T + +++ P P A + + + A+NFA
Sbjct: 66 ALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSYAKNFA 122
Query: 111 VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 123 IVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGL 164
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 26/125 (20%)
Query: 43 PVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
P ++ I AT G +G F+ M D P P S VQ +A P
Sbjct: 43 PGKSVISGATGFALGGVLGLFMASMAYDTPLHTPVPGGMSG----------AVQQMADLP 92
Query: 103 LVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAF 146
L Q A+NF I + AG+ C ++ LR K D+ + + A +G
Sbjct: 93 LRQQVKLQFADMGKRAYSSAKNFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGGL 152
Query: 147 SLVSG 151
+ SG
Sbjct: 153 AYKSG 157
>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2
OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
Length = 243
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
+FAV G+ + C M LR KED +S++A +G S+ G G A + +A G+L
Sbjct: 65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAA--SRSAIFGGVL 122
Query: 168 FAIFQG 173
A+ +G
Sbjct: 123 LALIEG 128
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFA 110
A + G +G GV T + +++ P P A + + + A+NFA
Sbjct: 64 ALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPLRTPTAKEVLRDMGQRG---MSYAKNFA 120
Query: 111 VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 121 IVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGL 162
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 54 AINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVIT 113
+ G +G GV T + +++ P P A + + + A+NFA++
Sbjct: 75 CVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAREVLKDMGQRG---MSYAKNFAIVG 131
Query: 114 GVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
+ + C+++ RGK D ++SV++ +G A +G+
Sbjct: 132 AMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGV 170
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Homo sapiens GN=TIMM17B PE=1 SV=1
Length = 172
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +GA + SG M G +A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVG-----SAMMG 119
Query: 165 GLLFAIFQGCSFKNKRH 181
G+L A+ +G R+
Sbjct: 120 GILLALIEGVGILLTRY 136
>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3
OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1
Length = 214
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148
A+ FAV++GV++ + C++K++RGK+D + VA +G A S
Sbjct: 88 AKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 130
>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2
OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1
Length = 210
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148
A+ FAV++GV++ + C++K++RGK+D + VA +G A S
Sbjct: 88 AKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 130
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 47 AIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQA 106
A A + G +G GV T + +++ P P A + + + A
Sbjct: 70 AFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSYA 126
Query: 107 RNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
+NFA++ + + C+++ RG D ++SV++ +G A +G+
Sbjct: 127 KNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGL 172
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 59 AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
++G G + + +PP + ++ A+A + V GG NF V G+ +
Sbjct: 24 SMGTIGGAIWHSIKGWRNSPPGEKRIS--AIAAAKTRAPVLGG------NFGVWGGLFST 75
Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVN-AFTSGLLFAIFQG 173
C +K +R KED ++++A F +G A ++ GG N A + A+F+G
Sbjct: 76 FDCAVKGVRRKEDPWNAIIAGFFTGGALAV---RGGWRATRNGAIGCACILAVFEG 128
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 55 INGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITG 114
+ G +G G+ T + +++ P P A + + + A+NFA++
Sbjct: 78 VGGFVLGGAFGIFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSYAKNFAIVGA 134
Query: 115 VNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
+ + C+++ RGK D ++SV++ +G A +G+
Sbjct: 135 MFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGV 172
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM17 PE=1 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
NF V G+ + C +K +R +ED ++++A F +G A ++ G + ++ T L
Sbjct: 64 NFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGW--RHTRNSSITCACL 121
Query: 168 FAIFQGCSFKNKRHA 182
+ +G +R+A
Sbjct: 122 LGVIEGVGLMFQRYA 136
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Mus musculus GN=Timm17b PE=2 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +GA + SG M G+ A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGS-----AMMG 119
Query: 165 GLLFAIFQGCSFKNKRH 181
G+L A+ +G R+
Sbjct: 120 GILLALIEGVGILLTRY 136
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 55 INGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITG 114
+ G AIG F +M+ P + L + + R FA +
Sbjct: 61 VGGLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGM 120
Query: 115 VNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTSGL 166
V +G+ C ++ R K D+ + V A F +GA + +G M G A AF+ +
Sbjct: 121 VYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFAAFSGAI 175
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 55 INGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITG 114
+ G AIG F +M+ P + L + + R FA +
Sbjct: 61 VGGLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGM 120
Query: 115 VNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTSGL 166
V +G+ C ++ R K D+ + V A F +GA + +G M G A AF+ +
Sbjct: 121 VYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFAAFSGAI 175
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I GV +G C ++ LR K D+ + V A +G ++ +G
Sbjct: 104 AKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAG 149
>sp|Q9LN27|TI171_ARATH Mitochondrial import inner membrane translocase subunit TIM17-1
OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1
Length = 218
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
+F+V G+ + C + R KED +S+++ +G SL G+G + A +A G+L
Sbjct: 65 SFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGAS--ARSALVGGVL 122
Query: 168 FAIFQG 173
A+ +G
Sbjct: 123 LAMIEG 128
>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Bos taurus GN=TIMM17B PE=2 SV=1
Length = 172
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG---AAFSLVSGMGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +G AA S+ M G +A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVG-----SAMMG 119
Query: 165 GLLFAIFQGCSFKNKRH 181
G+L A+ +G R+
Sbjct: 120 GILLALIEGVGILLTRY 136
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I V +G+ C ++ LR K D+ + V A +G ++ +G
Sbjct: 101 AKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAG 146
>sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=ARP4 PE=3 SV=1
Length = 471
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 133 QSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLF 168
++ V+AAF +G A SLV +GGAN +V A G++
Sbjct: 184 RTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVL 219
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG 143
A+NF ++ + +G C ++ LR K DL +SV++ +G
Sbjct: 111 AKNFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Mus musculus GN=Timm17a PE=2 SV=1
Length = 171
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G M G+ A
Sbjct: 65 SFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGS-----AAMG 119
Query: 165 GLLFAIFQGCSFKNKRHA 182
G+L A+ +G R A
Sbjct: 120 GILLALIEGAGILLTRFA 137
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGA 144
A+NFA + + +GI C ++ LR K DL + V A +GA
Sbjct: 120 AKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGA 158
>sp|Q1CZI3|NHAA2_MYXXD Na(+)/H(+) antiporter NhaA 2 OS=Myxococcus xanthus (strain DK 1622)
GN=nhaA2 PE=3 SV=1
Length = 470
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 74 SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGV 115
S TPP QS+L P+A AP ++ +AG PL + + +G+
Sbjct: 2 STTTPPGQSALPPEAWAPLLRLSRLAGRPLERFLHIEAASGI 43
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 16 QKAIKDVQFKLKELENGYKSWL--AKQPLP--------VEAAIVTATTA-INGAAIGAFL 64
+K + D K ENG + +L K P ++ IV + G A G
Sbjct: 10 KKILSDNAHKFMFAENGVRDFLPNIKNIAPYNEMQYNLMDNCIVHGVRGMVMGGAFGFLF 69
Query: 65 GVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMK 124
G + + P P + L + F++ Q +G L A++ ++IT V G C ++
Sbjct: 70 GALFTPNSGFTPEPTTPTPLYRQVIDGFKE-QGRSG--LRSAKSLSIITLVYTGTECAIE 126
Query: 125 RLRGKEDLQSSVVAAFGSGAAFS 147
+ RG+ D + + A +GA F+
Sbjct: 127 KARGRTDKLNPIYAGCTTGAVFA 149
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Homo sapiens GN=TIMM17A PE=1 SV=1
Length = 171
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G M G+ A
Sbjct: 65 SFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGS-----AAMG 119
Query: 165 GLLFAIFQGCSFKNKRHA 182
G+L A+ +G R A
Sbjct: 120 GILLALIEGAGILLTRFA 137
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Rattus norvegicus GN=Timm17a PE=2 SV=1
Length = 171
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G M G+ A
Sbjct: 65 SFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGS-----AAMG 119
Query: 165 GLLFAIFQGCSFKNKRHA 182
G+L A+ +G R A
Sbjct: 120 GILLALIEGAGILLTRFA 137
>sp|Q9LYG1|TI173_ARATH Mitochondrial import inner membrane translocase subunit TIM17-3
OS=Arabidopsis thaliana GN=TIM17-3 PE=2 SV=1
Length = 133
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
FAV G+ + + R+R KED +S+VA +G S+ G+ V A TS ++
Sbjct: 65 TFAVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGV------VAASTSAVM 118
Query: 168 FAIF 171
F F
Sbjct: 119 FGFF 122
>sp|P51176|TGM2_BOVIN Protein-glutamine gamma-glutamyltransferase 2 OS=Bos taurus GN=TGM2
PE=1 SV=1
Length = 687
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 17/155 (10%)
Query: 28 ELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPD 87
+L+ GY+ W A P P E + T + A + DL++ P + +N D
Sbjct: 346 DLQPGYEGWQALDPTPQEKS--EGTYCCGPVPVRA---IKEGDLSTKYDAPFVFAEVNAD 400
Query: 88 AVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFS 147
V +Q G L ++ N +++ G+ CV + R ED+ S GS
Sbjct: 401 VVDWIRQ----DDGSLHKSINHSLVVGLKISTKCVGRDDR--EDITHSYKYPEGSPEERE 454
Query: 148 LVSGMGGANPAVNAFTSGLLFAIF------QGCSF 176
+ N VN +G+ I +GC F
Sbjct: 455 AFTRANHLNKLVNKEETGVAMRIRVGEGMNRGCDF 489
>sp|Q9JUW1|DUT_NEIMA Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=dut PE=3 SV=1
Length = 150
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 43 PVEAAIVTATTAI---NGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVA 99
P AA++ + + +G +G +G++ D L S P V PF+++ +
Sbjct: 60 PSYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNRSSEPFTVKPFERIAQMV 119
Query: 100 GGPLVQAR 107
P+VQAR
Sbjct: 120 IVPIVQAR 127
>sp|Q6AX42|SEZ6_XENLA Seizure protein 6 homolog OS=Xenopus laevis GN=sez6 PE=2 SV=1
Length = 900
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 3 KGNEKVMSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGA 62
KG+ + ++L QL +AI F +++ + +P AA ++ T ++ A+
Sbjct: 40 KGSVEPVALEQLVHQAILKKDFLAQDV-----FFPGTTAIPTRAAPISLTEGVSDAS--- 91
Query: 63 FLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGP 102
GV+T + + PP S+L P + AP GGP
Sbjct: 92 --GVLTTAVGGAFSLPPQLSTLIPPSPAP-------TGGP 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,515,703
Number of Sequences: 539616
Number of extensions: 2644273
Number of successful extensions: 10442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10386
Number of HSP's gapped (non-prelim): 79
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)