Query 030115
Match_columns 183
No_of_seqs 138 out of 585
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbg_A Major prion protein; co 36.1 41 0.0014 18.6 3.0 19 49-67 6-24 (27)
2 2ww9_B Protein transport prote 32.0 49 0.0017 22.8 3.6 24 45-68 49-72 (80)
3 3twe_A Alpha4H; unknown functi 22.0 86 0.003 16.9 2.7 18 17-34 8-25 (27)
4 2imj_A Hypothetical protein DU 21.4 26 0.0009 27.3 0.7 17 120-136 17-33 (166)
5 2elu_A Zinc finger protein 406 21.1 31 0.0011 20.1 0.8 18 116-133 19-36 (37)
6 3bo0_B Preprotein translocase 20.1 1.7E+02 0.006 18.4 5.5 50 20-69 4-58 (65)
7 3mp7_B Preprotein translocase 15.7 1.2E+02 0.004 19.7 2.8 54 9-68 2-55 (61)
8 1rh5_B Preprotein translocase 14.8 2E+02 0.0067 19.3 3.8 25 45-69 36-60 (74)
9 2g9p_A Antimicrobial peptide l 10.7 1.1E+02 0.0037 16.3 1.2 12 119-130 15-26 (26)
10 2wwb_B SEC61gamma, protein tra 9.5 2.3E+02 0.008 18.6 2.8 26 45-70 35-60 (68)
No 1
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=36.11 E-value=41 Score=18.57 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030115 49 VTATTAINGAAIGAFLGVM 67 (183)
Q Consensus 49 ~t~~g~~~G~~~G~f~g~v 67 (183)
+...|.+.|++-|+++++.
T Consensus 6 a~AAGaVvGglGgy~lg~~ 24 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHH
Confidence 5667788888888887764
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=31.97 E-value=49 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 030115 45 EAAIVTATTAINGAAIGAFLGVMT 68 (183)
Q Consensus 45 e~~~~t~~g~~~G~~~G~f~g~v~ 68 (183)
+.+..++.|.++=|++|++.-++.
T Consensus 49 ~iak~t~iG~~imG~IGfiIkLI~ 72 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455578888888888888876654
No 3
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.01 E-value=86 Score=16.86 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHhHHHHH
Q 030115 17 KAIKDVQFKLKELENGYK 34 (183)
Q Consensus 17 ~~~~~~q~~~~~~~~~~k 34 (183)
+..+|+|++++.+.++++
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345677777766665543
No 4
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=21.42 E-value=26 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.9
Q ss_pred HHHHHHHhhccchhhHH
Q 030115 120 SCVMKRLRGKEDLQSSV 136 (183)
Q Consensus 120 ec~~~~~Rgk~D~~N~~ 136 (183)
|.+++|+|..+|.||+=
T Consensus 17 EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 17 ESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhccc
Confidence 77889999999999973
No 5
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.05 E-value=31 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhccchh
Q 030115 116 NAGISCVMKRLRGKEDLQ 133 (183)
Q Consensus 116 ysg~ec~~~~~Rgk~D~~ 133 (183)
|+-++.+++.+|..||..
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 566788899999999864
No 6
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=20.09 E-value=1.7e+02 Score=18.39 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=31.3
Q ss_pred hHHHHHHHHhHHHHHH--HHhhCCChHHHH---HHHHHHHHHHHHHHHHHHhhhc
Q 030115 20 KDVQFKLKELENGYKS--WLAKQPLPVEAA---IVTATTAINGAAIGAFLGVMTQ 69 (183)
Q Consensus 20 ~~~q~~~~~~~~~~k~--~~~~~~~~~e~~---~~t~~g~~~G~~~G~f~g~v~~ 69 (183)
.++.+.+++..++.++ |....|-.-|.. ..|+.+.+.=+++|+++..+..
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~ 58 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPAT 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444555666666665 332322225555 6888888888888888877663
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=15.71 E-value=1.2e+02 Score=19.67 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=27.9
Q ss_pred ccccCCCchhhhHHHHHHHHhHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030115 9 MSLVQLPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMT 68 (183)
Q Consensus 9 ~~~~~~p~~~~~~~q~~~~~~~~~~k~~~~~~~~~~e~~~~t~~g~~~G~~~G~f~g~v~ 68 (183)
++...+|.+-.+|+.+.++..++.-++-. .+.+..++.|.++=+++|+++-.+.
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef------~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATY------KRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666543322221111 1455578888777778888876654
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=14.80 E-value=2e+02 Score=19.32 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 030115 45 EAAIVTATTAINGAAIGAFLGVMTQ 69 (183)
Q Consensus 45 e~~~~t~~g~~~G~~~G~f~g~v~~ 69 (183)
+.+..++.|.++=|++|++.-.+.-
T Consensus 36 ~iak~~~iG~~imG~IGfiIkli~i 60 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYIIHVPAT 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777887777778887777663
No 9
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=10.71 E-value=1.1e+02 Score=16.33 Aligned_cols=12 Identities=50% Similarity=0.750 Sum_probs=8.4
Q ss_pred HHHHHHHHhhcc
Q 030115 119 ISCVMKRLRGKE 130 (183)
Q Consensus 119 ~ec~~~~~Rgk~ 130 (183)
+..++++.|+||
T Consensus 15 isyavkkargkh 26 (26)
T 2g9p_A 15 ISYAVKKARGKH 26 (26)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHccCC
Confidence 456677888875
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=9.55 E-value=2.3e+02 Score=18.62 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 030115 45 EAAIVTATTAINGAAIGAFLGVMTQD 70 (183)
Q Consensus 45 e~~~~t~~g~~~G~~~G~f~g~v~~~ 70 (183)
+.+..++.|.++=+++|++.-.+.-.
T Consensus 35 ~iak~~~iG~~i~G~IGf~IklI~ip 60 (68)
T 2wwb_B 35 KIAMATAIGFAIMGFIGFFVKLIHIP 60 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668888888888889887777643
Done!