Query 030115
Match_columns 183
No_of_seqs 138 out of 585
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 13:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 19.0 15 0.0011 26.5 0.7 16 120-135 13-28 (155)
2 d2okfa1 c.52.1.32 (A:4-139) Fd 13.9 1E+02 0.0074 21.5 4.2 40 2-41 46-88 (136)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 8.9 75 0.0055 20.2 1.8 24 118-141 15-41 (79)
4 d1t5ja_ a.209.1.1 (A:) Hypothe 5.7 2.2E+02 0.016 20.6 3.5 33 118-150 240-273 (301)
5 d2vkva2 a.121.1.1 (A:68-205) T 4.7 3E+02 0.022 17.4 3.4 28 18-45 4-31 (138)
6 d2hg7a1 d.186.2.1 (A:1-60) Pha 4.5 2.1E+02 0.015 16.9 2.0 17 14-30 38-54 (60)
7 d1nb5i_ d.17.1.2 (I:) Cystatin 4.3 2.5E+02 0.018 18.1 2.5 24 14-37 8-31 (98)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 4.1 7.7E+02 0.056 18.9 8.3 16 127-142 251-269 (383)
9 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 4.1 2E+02 0.015 17.5 1.8 23 114-136 21-44 (75)
10 d2fqma1 d.378.1.1 (A:107-171) 3.7 3.6E+02 0.026 16.0 2.7 36 2-37 9-47 (65)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=19.05 E-value=15 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHHHHhhccchhhH
Q 030115 120 SCVMKRLRGKEDLQSS 135 (183)
Q Consensus 120 ec~~~~~Rgk~D~~N~ 135 (183)
|.+++|+|-.+|.||+
T Consensus 13 etA~~KVr~AEdaWNs 28 (155)
T d2imja1 13 ESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6788999999999997
No 2
>d2okfa1 c.52.1.32 (A:4-139) FdxN element excision controlling factor protein {Anabaena variabilis [TaxId: 1172]}
Probab=13.89 E-value=1e+02 Score=21.48 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=26.8
Q ss_pred cccccccc---cccCCCchhhhHHHHHHHHhHHHHHHHHhhCC
Q 030115 2 EKGNEKVM---SLVQLPQKAIKDVQFKLKELENGYKSWLAKQP 41 (183)
Q Consensus 2 ~~~~~~~~---~~~~~p~~~~~~~q~~~~~~~~~~k~~~~~~~ 41 (183)
||+.||.+ +++-..+.+++|+...+.|.......-...+|
T Consensus 46 er~~~kIaVEIKsF~~~~S~i~df~~AlGQf~~Yr~~L~~~eP 88 (136)
T d2okfa1 46 ERQGQKIAVEVKSFLKQSSAISEFHTALGQFINYRGALRKVEP 88 (136)
T ss_dssp EETTEEEEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccCceEEEEEeCCCCCcchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 67888855 66655556889998888776665444444444
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=8.93 E-value=75 Score=20.17 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhccchhhHH---HHHHH
Q 030115 118 GISCVMKRLRGKEDLQSSV---VAAFG 141 (183)
Q Consensus 118 g~ec~~~~~Rgk~D~~N~~---~aG~~ 141 (183)
.++.+++++|.+.|..|== +|||+
T Consensus 15 aFrrL~~HL~~r~dVQNIDLMnLaGFC 41 (79)
T d2o35a1 15 VFRRLLEHLRERSDVQNIDLMNLAGFC 41 (79)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 4688999999999998853 36665
No 4
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.70 E-value=2.2e+02 Score=20.56 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhccch-hhHHHHHHHHhhhhhhcc
Q 030115 118 GISCVMKRLRGKEDL-QSSVVAAFGSGAAFSLVS 150 (183)
Q Consensus 118 g~ec~~~~~Rgk~D~-~N~~~aG~~tGa~l~~~~ 150 (183)
+.+.+...++--.|- .|+.+.|.+.|+.+|..+
T Consensus 240 f~~ai~~av~~GgDtdt~aai~Gal~GA~~G~~~ 273 (301)
T d1t5ja_ 240 FKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKN 273 (301)
T ss_dssp HHHHHHHHHTSCBSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhChhc
Confidence 445566666643333 466777777787777553
No 5
>d2vkva2 a.121.1.1 (A:68-205) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=4.73 E-value=3e+02 Score=17.36 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHhHHHHHHHHhhCCChHH
Q 030115 18 AIKDVQFKLKELENGYKSWLAKQPLPVE 45 (183)
Q Consensus 18 ~~~~~q~~~~~~~~~~k~~~~~~~~~~e 45 (183)
|.++||+.+++.-..+...+...|+..+
T Consensus 4 p~~~Wr~~lr~~a~~~r~~~~~hP~~a~ 31 (138)
T d2vkva2 4 AGESWQSFLRNNAMSFRRALLRYRDGAK 31 (138)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCccHHH
Confidence 3368999888888888887766666543
No 6
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=4.49 E-value=2.1e+02 Score=16.93 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=11.7
Q ss_pred CCchhhhHHHHHHHHhH
Q 030115 14 LPQKAIKDVQFKLKELE 30 (183)
Q Consensus 14 ~p~~~~~~~q~~~~~~~ 30 (183)
-|+|..+|+++.+++.+
T Consensus 38 aP~PTe~EL~~~w~e~q 54 (60)
T d2hg7a1 38 APLPTQAELETWWEELQ 54 (60)
T ss_dssp SCCCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 46778888888865543
No 7
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=2.5e+02 Score=18.10 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=19.3
Q ss_pred CCchhhhHHHHHHHHhHHHHHHHH
Q 030115 14 LPQKAIKDVQFKLKELENGYKSWL 37 (183)
Q Consensus 14 ~p~~~~~~~q~~~~~~~~~~k~~~ 37 (183)
++.++.+|+|+..+++..+++.-.
T Consensus 8 ~~~~at~Eiq~I~d~Vk~~le~k~ 31 (98)
T d1nb5i_ 8 EAKPATPEIQEIVDKVKPQLEEKT 31 (98)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 567888999999888888876654
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=7.7e+02 Score=18.87 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=9.3
Q ss_pred hhccchh---hHHHHHHHH
Q 030115 127 RGKEDLQ---SSVVAAFGS 142 (183)
Q Consensus 127 Rgk~D~~---N~~~aG~~t 142 (183)
++|-|.. |.+++|.++
T Consensus 251 ~~k~~~~~~~nG~LaGLVa 269 (383)
T d1u7ga_ 251 RGLPSLLGACSGAIAGLVG 269 (383)
T ss_dssp HSSCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhhhhhhh
Confidence 3566554 666666663
No 9
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.07 E-value=2e+02 Score=17.46 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhh-ccchhhHH
Q 030115 114 GVNAGISCVMKRLRG-KEDLQSSV 136 (183)
Q Consensus 114 ~~ysg~ec~~~~~Rg-k~D~~N~~ 136 (183)
-+|..++.-..-+|. .++|.|++
T Consensus 21 eIy~~i~~~fpy~r~~~~gWkNSI 44 (75)
T d1kq8a_ 21 EINEYLMGKFPFFRGSYTGWRNSV 44 (75)
T ss_dssp HHHHHHHHHCTTGGGTCSCCHHHH
T ss_pred HHHHHHHHhCcccccCCccchhHh
Confidence 345555555555664 66788886
No 10
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=3.66 E-value=3.6e+02 Score=15.98 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=20.8
Q ss_pred cccccccccccCCCc---hhhhHHHHHHHHhHHHHHHHH
Q 030115 2 EKGNEKVMSLVQLPQ---KAIKDVQFKLKELENGYKSWL 37 (183)
Q Consensus 2 ~~~~~~~~~~~~~p~---~~~~~~q~~~~~~~~~~k~~~ 37 (183)
|.|.||--++++|.. ...+++..-.|.+.+-.|+|-
T Consensus 9 ~~g~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSakyWN 47 (65)
T d2fqma1 9 SDEHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAKHWN 47 (65)
T ss_dssp EETTEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCceEEEeCCCCcchHHHHHHHHHHHHHHhhhcccc
Confidence 456677667777664 344444444455555556664
Done!