Query 030116
Match_columns 182
No_of_seqs 141 out of 1134
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.6E-52 1E-56 314.4 14.9 145 34-179 5-151 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 5.4E-52 1.2E-56 308.0 12.2 144 35-179 2-146 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 1.5E-48 3.2E-53 297.5 15.7 145 34-179 2-147 (152)
4 PLN00172 ubiquitin conjugating 100.0 4.2E-48 9E-53 293.7 15.8 144 35-179 2-146 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 5.9E-48 1.3E-52 279.3 12.7 143 32-175 2-145 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 5.6E-45 1.2E-49 271.0 14.2 142 35-177 6-162 (171)
7 KOG0421 Ubiquitin-protein liga 100.0 6.5E-45 1.4E-49 267.1 13.4 158 17-175 12-169 (175)
8 KOG0418 Ubiquitin-protein liga 100.0 2.8E-43 6.1E-48 269.1 11.9 143 35-178 4-151 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 5.5E-43 1.2E-47 263.4 12.9 137 38-175 1-140 (140)
10 KOG0424 Ubiquitin-protein liga 100.0 1.1E-42 2.3E-47 255.4 13.5 146 33-179 3-156 (158)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.4E-42 5.3E-47 260.3 15.2 138 37-175 2-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 2.6E-42 5.6E-47 250.2 12.5 145 33-178 3-162 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 2.1E-41 4.5E-46 256.3 14.7 142 37-179 1-145 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 4.2E-39 9.1E-44 235.3 11.5 144 34-179 2-148 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 3.9E-37 8.4E-42 232.3 10.5 148 27-178 21-173 (184)
16 KOG0416 Ubiquitin-protein liga 100.0 1.1E-36 2.5E-41 229.4 9.9 141 35-179 4-147 (189)
17 KOG0423 Ubiquitin-protein liga 100.0 5.4E-35 1.2E-39 220.9 5.7 142 34-176 10-152 (223)
18 KOG0427 Ubiquitin conjugating 100.0 3.2E-30 7E-35 186.9 12.2 142 27-179 8-153 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 3.2E-27 6.9E-32 184.4 12.9 117 31-152 2-125 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 4.3E-23 9.3E-28 161.8 12.3 148 29-178 14-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 5.2E-21 1.1E-25 152.3 9.3 112 33-148 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 9.2E-19 2E-23 162.1 4.5 118 34-152 851-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 2E-15 4.4E-20 140.1 11.1 114 32-146 280-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1.5E-13 3.3E-18 100.5 6.7 110 36-145 7-122 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 5.3E-10 1.1E-14 79.8 4.9 93 83-176 12-111 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 2E-07 4.3E-12 69.6 6.6 67 80-146 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.3 2.7E-06 5.8E-11 62.6 7.9 67 78-145 42-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.1 3.3E-06 7.1E-11 62.9 3.7 100 31-137 21-135 (161)
29 KOG2391 Vacuolar sorting prote 97.8 0.00013 2.9E-09 61.5 9.3 111 33-148 19-139 (365)
30 KOG3357 Uncharacterized conser 97.5 0.00037 8.1E-09 51.3 6.0 100 30-136 23-137 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.5 0.046 1E-06 40.2 9.9 90 53-145 12-120 (122)
32 PF05773 RWD: RWD domain; Int 95.9 0.025 5.4E-07 39.8 5.6 70 37-108 4-75 (113)
33 smart00591 RWD domain in RING 94.9 0.18 3.8E-06 35.1 7.1 27 80-106 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 94.2 0.094 2E-06 40.4 4.8 60 86-145 57-125 (162)
35 KOG0309 Conserved WD40 repeat- 86.4 2.8 6E-05 39.8 7.0 70 35-106 421-491 (1081)
36 PF09765 WD-3: WD-repeat regio 80.9 3.2 7E-05 34.9 4.9 88 33-144 98-186 (291)
37 KOG4274 Positive cofactor 2 (P 72.3 38 0.00082 31.4 9.3 118 2-152 588-709 (742)
38 KOG4018 Uncharacterized conser 68.8 13 0.00029 29.8 5.2 37 64-101 30-68 (215)
39 PF06113 BRE: Brain and reprod 68.7 13 0.00029 31.8 5.5 61 78-144 61-124 (333)
40 PF14460 Prok-E2_D: Prokaryoti 62.3 14 0.00031 28.6 4.2 39 111-152 99-137 (175)
41 TIGR03737 PRTRC_B PRTRC system 58.5 18 0.00039 29.4 4.3 38 111-152 140-178 (228)
42 KOG0177 20S proteasome, regula 46.2 17 0.00037 28.8 2.2 31 115-145 135-165 (200)
43 PF09606 Med15: ARC105 or Med1 42.0 8.5 0.00018 36.9 0.0 27 82-108 714-740 (799)
44 cd00421 intradiol_dioxygenase 41.8 28 0.00061 26.0 2.8 26 80-105 64-90 (146)
45 cd03457 intradiol_dioxygenase_ 40.1 31 0.00066 27.2 2.9 26 80-105 85-110 (188)
46 smart00340 HALZ homeobox assoc 38.2 30 0.00064 20.6 1.9 14 35-48 20-33 (44)
47 KOG2851 Eukaryotic-type DNA pr 34.5 74 0.0016 27.8 4.5 60 115-175 336-406 (412)
48 cd03459 3,4-PCD Protocatechuat 32.1 50 0.0011 25.2 2.9 25 81-105 72-101 (158)
49 KOG3285 Spindle assembly check 31.4 1.5E+02 0.0033 23.3 5.4 60 30-101 115-174 (203)
50 PF06113 BRE: Brain and reprod 30.8 54 0.0012 28.3 3.1 25 81-105 305-329 (333)
51 PF14135 DUF4302: Domain of un 30.4 1.6E+02 0.0036 23.6 5.8 70 33-115 8-102 (235)
52 cd05845 Ig2_L1-CAM_like Second 29.1 91 0.002 21.6 3.5 26 79-106 16-41 (95)
53 KOG0662 Cyclin-dependent kinas 27.9 48 0.001 26.6 2.1 56 96-151 167-226 (292)
54 PHA03200 uracil DNA glycosylas 26.3 83 0.0018 26.1 3.3 38 64-104 82-120 (255)
55 PF03366 YEATS: YEATS family; 26.2 1.9E+02 0.0041 19.5 4.6 42 65-108 2-43 (84)
56 TIGR02423 protocat_alph protoc 24.5 77 0.0017 25.0 2.8 25 80-104 95-124 (193)
57 PF02563 Poly_export: Polysacc 23.3 1.1E+02 0.0024 20.2 3.0 36 111-146 34-69 (82)
58 PF13950 Epimerase_Csub: UDP-g 23.2 86 0.0019 19.8 2.4 20 125-144 36-55 (62)
59 cd03463 3,4-PCD_alpha Protocat 22.1 94 0.002 24.4 2.8 24 81-104 92-120 (185)
60 COG0544 Tig FKBP-type peptidyl 22.1 1.8E+02 0.0039 26.0 4.9 14 83-96 210-223 (441)
61 PF04881 Adeno_GP19K: Adenovir 21.7 1.5E+02 0.0033 22.0 3.6 20 61-80 44-63 (139)
62 PF00845 Gemini_BL1: Geminivir 21.5 2E+02 0.0042 23.9 4.5 47 62-108 100-154 (276)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-52 Score=314.39 Aligned_cols=145 Identities=50% Similarity=0.793 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.+.+||++|++.|++ ++++++++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++||||||
T Consensus 5 ~a~~RL~kE~~~l~~-~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 5 SALKRLLKELKKLQK-DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred hHHHHHHHHHHHHhc-CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 389999999999999 8899999999977 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|.+|+|||++|++.|+|+++|++||.+|++||.+||.++|+|.|||++|++| ++|.++||++++++.
T Consensus 84 ~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~ 151 (153)
T COG5078 84 DPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYA 151 (153)
T ss_pred CCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999 999999999998874
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-52 Score=307.97 Aligned_cols=144 Identities=43% Similarity=0.735 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 114 (182)
+.+||.+|+++|++ ++++||++.++++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~RI~kE~~~l~~-dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLR-DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred cHHHHHHHHHHHhc-CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 45699999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+|+||+|+|++.|+|+.+|..||.+|++||.+||+++|++.++|++|+.| ++|.++||+|+++|.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA 146 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYA 146 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 999999999999885
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.5e-48 Score=297.55 Aligned_cols=145 Identities=41% Similarity=0.684 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
+++|||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~~~kRl~~E~~~l~~-~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~ 80 (152)
T PTZ00390 2 SISKRIEKETQNLAN-DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID 80 (152)
T ss_pred cHHHHHHHHHHHHHh-CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC
Confidence 367999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
.+|.||+++|+++|+|++||.+||++|+++|.+|++++|+|.+||++|++| ++|.++|++|+++|.
T Consensus 81 ~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a 147 (152)
T PTZ00390 81 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYA 147 (152)
T ss_pred CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 999999999998874
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.2e-48 Score=293.73 Aligned_cols=144 Identities=40% Similarity=0.694 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 114 (182)
+.+||++|+++|++ ++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 a~~Rl~kE~~~l~~-~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 2 ATKRIQKEHKDLLK-DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred hHHHHHHHHHHHHh-CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 46899999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|.+| ++|.++||+|+++|.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 999999999998875
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-48 Score=279.34 Aligned_cols=143 Identities=43% Similarity=0.710 Sum_probs=138.9
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
++.|.|||++|++.|++ +++.|++..|.++|+++|+++|+||.+|||+||+|++.|.|+++||.+||.|+|++++||||
T Consensus 2 stpArrrLmrDfkrlqe-dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQE-DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CchHHHHHHHHHHHhhc-CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 34688999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP 175 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~ 175 (182)
|+.+|.+|||+|...|+|.|++..||.+|++||.+|++++|+|.+||++|+++ .+|.+.++...
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~v 145 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETV 145 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999998763
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-45 Score=271.01 Aligned_cols=142 Identities=35% Similarity=0.554 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
+..-|+++|++|++ .+..|+++..+++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.++||||||+
T Consensus 6 a~~ll~~qlk~L~~-~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQE-EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hHHHHHHHHHHHhc-CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 67788999999999 9999999998854 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116 114 QYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY 177 (182)
Q Consensus 114 ~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~ 177 (182)
++|++|++||. +.|.|.+|+++||++|.+||.+||.++|+|.|||+.|+++ ++|.+++++++.+
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999993 5799999999999999999999999999999999999999 9999999988754
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-45 Score=267.15 Aligned_cols=158 Identities=60% Similarity=0.976 Sum_probs=149.0
Q ss_pred cCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC
Q 030116 17 AASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF 96 (182)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~ 96 (182)
++.+++.+.+........+.|||+.||..|.. ...+||+++|++||++.|.++|.||.+|+|+|-.|++.+.||.+||+
T Consensus 12 ~~~sk~~a~~m~v~~~~~V~KRLq~ELm~Lmm-s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy 90 (175)
T KOG0421|consen 12 TNGSKQSAAPMAVVDGHSVTKRLQSELMGLMM-SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPY 90 (175)
T ss_pred CCcccCCCCCcccccCchHHHHHHHHHHHHHh-cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCC
Confidence 36677777777788899999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred CCCcceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhchHHHHHHHhhcc
Q 030116 97 KPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEGCIHMFSLSP 175 (182)
Q Consensus 97 ~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~~~f~~~a~~~~ 175 (182)
+||+|+|.|++||||||..|.||||||++.|+..|+++.||.+|++||.+||.++|+|..||+++.+-++|++.+...-
T Consensus 91 ~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y 169 (175)
T KOG0421|consen 91 KPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALY 169 (175)
T ss_pred CCCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999993399999887643
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-43 Score=269.13 Aligned_cols=143 Identities=34% Similarity=0.602 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 35 VTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~---~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+||++|++++.+ ++ ..|+.+..+++|+.+..+.|.||+|||||||+|.++|++|++|||+||+|+|.|+|||||
T Consensus 4 ~~~ri~~e~k~v~~-~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPn 82 (200)
T KOG0418|consen 4 AFKRINREQKEVLD-DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPN 82 (200)
T ss_pred HHHHHHHHHHHhcc-ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCC
Confidence 78999999999998 66 689999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116 112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY 178 (182)
Q Consensus 112 i~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~ 178 (182)
|.+ +|.||||+|++.|++++|++.+|.+|+++|..|++.+|.+.++|++|.++ +.|.+.||.|+..|
T Consensus 83 VSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~f 151 (200)
T KOG0418|consen 83 VSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEF 151 (200)
T ss_pred CCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999 99999999998765
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5.5e-43 Score=263.43 Aligned_cols=137 Identities=50% Similarity=0.812 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCC
Q 030116 38 RLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (182)
Q Consensus 38 RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G 116 (182)
||++|+++|++ +++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.+|
T Consensus 1 Rl~~E~~~l~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G 79 (140)
T PF00179_consen 1 RLQKELKELQK-NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG 79 (140)
T ss_dssp HHHHHHHHHHH-SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred CHHHHHHHHhh-CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccccccccc
Confidence 89999999999 9999999999886 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCC-ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116 117 NICLDILQD-KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP 175 (182)
Q Consensus 117 ~icl~~l~~-~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~ 175 (182)
.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|+++ ++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999974 599999999999999999999999999999999999999 99999999873
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=255.39 Aligned_cols=146 Identities=35% Similarity=0.557 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
..++.||+.|-+.+.+ +.+-|+++.|.. .|++.|+|.|.|+.||+||||.|++++.||++||.+||+++|.++.
T Consensus 3 ~~~~~rl~eErk~wrk-~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRK-DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred chHHHHHHHHHHHHhh-cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 4578999999999999 999999999872 3799999999999999999999999999999999999999999999
Q ss_pred CCCceeCCCcEEeecCCCc--cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 108 FHPNVDQYGNICLDILQDK--WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 108 ~HPni~~~G~icl~~l~~~--W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|||||+++|.|||++|.+. |+|+.||.+||.+|+.||.+||..+|+|.||..+|.+| .+|.++||.++++|+
T Consensus 82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a 156 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA 156 (158)
T ss_pred cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence 9999999999999999754 99999999999999999999999999999999999999 999999999999875
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.4e-42 Score=260.29 Aligned_cols=138 Identities=51% Similarity=0.824 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCC
Q 030116 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYG 116 (182)
Q Consensus 37 ~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G 116 (182)
|||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus 2 ~Rl~~E~~~l~~-~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 2 KRLQKELKDLKK-DPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred chHHHHHHHHHh-CCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 799999999999 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCc-cCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116 117 NICLDILQDK-WSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSP 175 (182)
Q Consensus 117 ~icl~~l~~~-W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~ 175 (182)
.||++++... |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++| ++|.++|+.++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999766 99999999999999999999999999999999999999 99999999864
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-42 Score=250.16 Aligned_cols=145 Identities=33% Similarity=0.579 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
..|+|||++||++|-. ++++|+.+.|. ++|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+||||
T Consensus 3 ~~AlkRLm~EykqLt~-~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTL-NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred hhHHHHHHHHHHHHcc-CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 4689999999999999 99999999987 789999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116 112 VDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY 177 (182)
Q Consensus 112 i~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~ 177 (182)
|+.+|+||+++|. +.|+|.++++.||.++.+||.+||.++++|.+|+.+++++ ++|.+.|+..+.|
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999993 5799999999999999999999999999999999999999 9999999988765
Q ss_pred c
Q 030116 178 Y 178 (182)
Q Consensus 178 ~ 178 (182)
.
T Consensus 162 t 162 (165)
T KOG0426|consen 162 T 162 (165)
T ss_pred h
Confidence 3
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.1e-41 Score=256.32 Aligned_cols=142 Identities=52% Similarity=0.846 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116 37 QRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115 (182)
Q Consensus 37 ~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 115 (182)
+||++|++++++ +.+.|+.+.+.++ |+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++
T Consensus 1 ~Rl~~E~~~~~~-~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~ 79 (145)
T smart00212 1 KRLLKELKELLK-DPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSS 79 (145)
T ss_pred ChHHHHHHHHHh-CCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCC
Confidence 599999999999 8889999998865 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 116 GNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 116 G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|.||++++. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.++ +.|.++|+++++++.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 8999999999999999999999999999999999999999 999999999998863
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-39 Score=235.34 Aligned_cols=144 Identities=28% Similarity=0.565 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeE-EEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVS-AFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~-~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.+.+||.+||.+|++ ++...+. +...++|++.|++.|. |++-||..|.|+++|.||.+|||+||+|.|.|+||||||
T Consensus 2 ~a~~Rl~kEL~dl~~-~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 2 AAPRRLRKELADLQK-NKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred chhHHHHHHHHHHHh-ccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 478999999999999 7766554 3444789999999999 999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.|.+|+.++ .++|+|+..+++||+.|..++.+|+++.|++.|+|..|.+| ..|.++|.+++++|.
T Consensus 80 De~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~ 148 (153)
T KOG0422|consen 80 DEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYS 148 (153)
T ss_pred CCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhc
Confidence 99999999999 58999999999999999999999999999999999999999 999999999999885
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-37 Score=232.33 Aligned_cols=148 Identities=32% Similarity=0.576 Sum_probs=129.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhCCCCCeEE-Eec-CCCCc--eEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcce
Q 030116 27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSA-FPE-GESIF--TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK 102 (182)
Q Consensus 27 ~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~-~~~-~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 102 (182)
+.....+.++-||++|+.++.- +++++. .+. .++++ +++++|. |+++.|.||.|+|.+.+|+.||+.||+|+
T Consensus 21 ~~~~~~s~a~lrl~~di~elnL---p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVk 96 (184)
T KOG0420|consen 21 STRKKVSAALLRLKKDILELNL---PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVK 96 (184)
T ss_pred cccccccHHHHHHHhhhhhccC---CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeee
Confidence 3444556688899999998853 445542 222 34444 4999999 99999999999999999999999999999
Q ss_pred eccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116 103 FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY 178 (182)
Q Consensus 103 f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~ 178 (182)
|.|+|||||||.+|.|||+||+++|+|+.++.+|+.+|+.||.+|+++||+|.+||.++++| +.|...||..-..+
T Consensus 97 CltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg 173 (184)
T KOG0420|consen 97 CLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGG 173 (184)
T ss_pred eeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999875543
No 16
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=229.37 Aligned_cols=141 Identities=32% Similarity=0.574 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 114 (182)
..|||..|...|.. .+..+..+++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||++
T Consensus 4 ~~rRid~Dv~KL~~----s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLM----SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred cccchhhHHHHHHh----cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 45899999999887 25568878899999999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 115 -~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+|.|||++++..|+|.+.+..|+.. |-.||..||+.+|+|.+||.+|.++ ++|.+++|++.++|.
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA 147 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYA 147 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999886 5789999999999999999999999 999999999988874
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-35 Score=220.85 Aligned_cols=142 Identities=35% Similarity=0.540 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
-.+|.+.+|+++|.. .++.||.|.+.++|+....+.|.||.||||++|+|++.+.+..+||.+||+-.|+|+||||||-
T Consensus 10 ~vik~~~kEl~~l~~-~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDE-SPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred HHHHHHHHHHHhccc-CCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 478999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV 176 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~ 176 (182)
.||.||++.|+.+|+|...|..||..|+.||.+|++++.+|.+|.+++.++ ++|.+.||.++-
T Consensus 89 aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 89 ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999998754
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-30 Score=186.93 Aligned_cols=142 Identities=32% Similarity=0.555 Sum_probs=122.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116 27 PNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 27 ~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
++..-+..+.+||++||.+|+. +++.|+... +.+|+..|.+-+.|-+||.|+|-+|.+.++||+.||+..|.|.|..+
T Consensus 8 ~rk~ls~~at~RLqKEl~e~q~-~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 8 SRKALSKIATNRLQKELSEWQN-NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 3344456799999999999999 999999887 78999999999999999999999999999999999999999999998
Q ss_pred c-CCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcC-CCCCCcccHHHHHHhhchHHHHHHHh--hcccccc
Q 030116 107 C-FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNKEGCIHMFS--LSPVYYH 179 (182)
Q Consensus 107 i-~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~-p~~~~p~N~~a~~~~~~~~~f~~~a~--~~~~~~~ 179 (182)
+ .||+|+.||.|||++|.+.|+|++++.+|+.+|.+||.. .....|.+. ..|.++++ +..++.+
T Consensus 86 ~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn---------~~Yvk~C~~grsPk~Tr 153 (161)
T KOG0427|consen 86 APLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDN---------DRYVKNCKNGRSPKETR 153 (161)
T ss_pred CCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCcc---------chhhhhccCCCCcccce
Confidence 4 799999999999999999999999999999999999984 444455322 55666666 5554443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-27 Score=184.41 Aligned_cols=117 Identities=32% Similarity=0.549 Sum_probs=106.4
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc--cC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CF 108 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 108 (182)
.+..+.|||++||+.|++ ++.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||-|+++|| .|
T Consensus 2 a~k~a~kRl~keY~~l~k-~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCK-DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred cchHHHHHHHHHHHHHHh-CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 456799999999999999 999999999999999999999999999999999999999999999999999999998 55
Q ss_pred CCceeCCCcEEeecCC---CccCCCCCHHHHHHHHHHhhcC--CCCCCc
Q 030116 109 HPNVDQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLGE--PNPESP 152 (182)
Q Consensus 109 HPni~~~G~icl~~l~---~~W~p~~~i~~vL~~i~~ll~~--p~~~~p 152 (182)
.+ +-++||++.. +.|+|++++.+||.+|.++|.+ |...+.
T Consensus 81 kt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI 125 (244)
T KOG0894|consen 81 KT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSI 125 (244)
T ss_pred ec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcc
Confidence 44 4799999884 8899999999999999999974 444443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-23 Score=161.79 Aligned_cols=148 Identities=19% Similarity=0.296 Sum_probs=132.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC--CCCcceeccc
Q 030116 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF--KPPQVKFETM 106 (182)
Q Consensus 29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~ 106 (182)
......-...|+.|+..+.+ .+.+|+++.|+-.|-+.|.++|++.. ++|.||+|+|+|.+|++||. .-|.|.|.+.
T Consensus 14 ~ig~i~qey~llAEf~lV~~-ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~ 91 (258)
T KOG0429|consen 14 IIGNILQEYALLAEFVLVCR-EKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQS 91 (258)
T ss_pred cchHHHHHHHHHHHHHHHHh-ccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeecc
Confidence 33444455689999999998 89999999999999999999999655 59999999999999999995 8999999999
Q ss_pred cCCCceeC-CCcEEeecCCCccCCC-CCHHHHHHHHHHhhcCCCCCCc--ccHHHHHHhhch-HHHHHHHhhccccc
Q 030116 107 CFHPNVDQ-YGNICLDILQDKWSSA-YDCRTILLSIQSLLGEPNPESP--LNSYAAALLNNK-EGCIHMFSLSPVYY 178 (182)
Q Consensus 107 i~HPni~~-~G~icl~~l~~~W~p~-~~i~~vL~~i~~ll~~p~~~~p--~N~~a~~~~~~~-~~f~~~a~~~~~~~ 178 (182)
++||+|.+ ++.+|+.-....|+-. .+|.+||+.|+.+|.+|+.+.+ .|+||+.+|+++ ++|.++|+++++.+
T Consensus 92 vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 92 VFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred ccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999 9999998876679655 5899999999999999998766 699999999999 99999999998754
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.2e-21 Score=152.30 Aligned_cols=112 Identities=30% Similarity=0.515 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
..+.|||++|.++|+ ++...+...+.++|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+-. .+
T Consensus 10 npaVkRlmkEa~El~--~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--RF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK--DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--RF 85 (314)
T ss_pred CHHHHHHHHHHHHhc--CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--ce
Confidence 358999999999998 57778889999999999999999999999999999999999999999999999998743 34
Q ss_pred eCCCcEEeecCC---CccCCCCCHHHHHHHHHHhhc-CCC
Q 030116 113 DQYGNICLDILQ---DKWSSAYDCRTILLSIQSLLG-EPN 148 (182)
Q Consensus 113 ~~~G~icl~~l~---~~W~p~~~i~~vL~~i~~ll~-~p~ 148 (182)
.-|.+|||++.+ +.|.|+++|...|..|..+|- .|+
T Consensus 86 E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 86 EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 447899999984 789999999999999998885 444
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.2e-19 Score=162.06 Aligned_cols=118 Identities=26% Similarity=0.463 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc--cCCCc
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM--CFHPN 111 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 111 (182)
...+..+.|++-|.. +.+.|+.|...++.+....+.|.|+.||||.+|.|.|.|.||.+||.+||.+...+. .++||
T Consensus 851 ~~~~~~~~~~~~~~~-~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPL-SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHhhhc-cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 466677788888887 889999999999999999999999999999999999999999999999999999986 78999
Q ss_pred eeCCCcEEeecCC-------CccCCCCCHHHHHHHHHHhhc--CCCCCCc
Q 030116 112 VDQYGNICLDILQ-------DKWSSAYDCRTILLSIQSLLG--EPNPESP 152 (182)
Q Consensus 112 i~~~G~icl~~l~-------~~W~p~~~i~~vL~~i~~ll~--~p~~~~p 152 (182)
.++.|+|||++|+ +-|+|+-+|.+||.+|+.|+- +|.++.+
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 9999999999994 569999999999999999985 5655554
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2e-15 Score=140.12 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc---cC
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM---CF 108 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~ 108 (182)
+....+|+++|++.+.+ +.++|+.+.+.+.++...++.|.|+.||||++|+|.|+|.||..||..||.+.+.+. .+
T Consensus 280 s~~~skrv~ke~~llsk-dlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~ 358 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSK-DLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL 358 (1101)
T ss_pred chhhHHHHHHHhhhhcc-cCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence 34588999999999999 999999999999999999999999999999999999999999999999999999986 78
Q ss_pred CCceeCCCcEEeecCC-------CccCCC-CCHHHHHHHHHHhhcC
Q 030116 109 HPNVDQYGNICLDILQ-------DKWSSA-YDCRTILLSIQSLLGE 146 (182)
Q Consensus 109 HPni~~~G~icl~~l~-------~~W~p~-~~i~~vL~~i~~ll~~ 146 (182)
.||.+.+|+||+++|. +.|++. .++.++|..|+.++.+
T Consensus 359 nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 359 NPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 9999999999999993 679998 7999999999999963
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.5e-13 Score=100.52 Aligned_cols=110 Identities=29% Similarity=0.386 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecC-CC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 36 TQRLQKELMSLMMSGGDLGVSAFPEG-ES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 36 ~~RL~~El~~l~~~~~~~g~~~~~~~-~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.-||.+|+.+=++...+..++....+ +| +..|..+|.||+.|+||+-+|.++|....+||..||+|+|.+++--.-|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gv 86 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGV 86 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccc
Confidence 34788888877663344445555443 33 4589999999999999999999999999999999999999999999888
Q ss_pred eC-CCcEEeecC--CCccCCCCCHHHHHHHHHHhhc
Q 030116 113 DQ-YGNICLDIL--QDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 113 ~~-~G~icl~~l--~~~W~p~~~i~~vL~~i~~ll~ 145 (182)
+. +|.|.-..+ -.+|+..++++.||..++.++.
T Consensus 87 n~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 88 778774333 2799999999999999987654
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.3e-10 Score=79.82 Aligned_cols=93 Identities=23% Similarity=0.400 Sum_probs=74.5
Q ss_pred EEEEEEEeCCCCCCCCCcceeccccC-CCceeCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCC--CCcccHHHH
Q 030116 83 SYKLSLRFPLDYPFKPPQVKFETMCF-HPNVDQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNP--ESPLNSYAA 158 (182)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~t~i~-HPni~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~--~~p~N~~a~ 158 (182)
...+.+.|++|||+.||.++.+.|.. -.-|-.+|.||+.++ .++|+.+++|+.++++|..++..... ..|++.+.-
T Consensus 12 ~ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 12 NILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eeEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence 34577889999999999999888743 444556999999999 58999999999999999999997664 466666554
Q ss_pred HHhhch---HHHHHHHhhccc
Q 030116 159 ALLNNK---EGCIHMFSLSPV 176 (182)
Q Consensus 159 ~~~~~~---~~f~~~a~~~~~ 176 (182)
+|... +.|++.++.+.+
T Consensus 92 -~~s~~qa~~sfksLv~~hek 111 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIHEK 111 (122)
T ss_pred -HhhHHHHHHHHHHHHHHHHh
Confidence 55544 889988887765
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.56 E-value=2e-07 Score=69.55 Aligned_cols=67 Identities=31% Similarity=0.607 Sum_probs=61.1
Q ss_pred CCCEEEEEEEeCCCCCCCCCcceecccc---CCCceeCCCcEEe---ecCCCccCCCCCHHHHHHHHHHhhcC
Q 030116 80 EGLSYKLSLRFPLDYPFKPPQVKFETMC---FHPNVDQYGNICL---DILQDKWSSAYDCRTILLSIQSLLGE 146 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPni~~~G~icl---~~l~~~W~p~~~i~~vL~~i~~ll~~ 146 (182)
.|+.+.++|.||++||..||.|....+. +-|+|+.+|.+|+ +..-+.|.|...+.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988654 6899999999999 77778999999999999999999983
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.35 E-value=2.7e-06 Score=62.55 Aligned_cols=67 Identities=24% Similarity=0.580 Sum_probs=49.1
Q ss_pred CCCCCEEE--EEEEeCCCCCCCCCcceecccc-----CCCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhc
Q 030116 78 MYEGLSYK--LSLRFPLDYPFKPPQVKFETMC-----FHPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG 145 (182)
Q Consensus 78 py~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~ 145 (182)
.|+|..|. +.|.+|.+||.+||.+...... -+.+||.+|+|.+..| ++|.. ..++.+++..+...|.
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHh
Confidence 57788775 6777999999999999776432 2349999999999999 58987 7899999999998886
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.09 E-value=3.3e-06 Score=62.86 Aligned_cols=100 Identities=22% Similarity=0.393 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC--------E--EEEEEEeCCCCCCCCCc
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL--------S--YKLSLRFPLDYPFKPPQ 100 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg--------~--f~~~i~fp~~YP~~pP~ 100 (182)
+......||+.||..|-+ ++....++-..|.-.=..++||-|.|. . |.+++++|..||..||.
T Consensus 21 d~~~W~~RLKEEy~aLI~-------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 21 DGDLWVQRLKEEYQALIK-------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp SCHHHHHHHHHHHHHHHH-------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred CHHHHHHHHHHHHHHHHH-------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence 447899999999999866 222222222233222222444444332 3 44556669999999999
Q ss_pred ceecccc-CCCceeCCCcEEeecC-CCcc---CCCCCHHHHH
Q 030116 101 VKFETMC-FHPNVDQYGNICLDIL-QDKW---SSAYDCRTIL 137 (182)
Q Consensus 101 v~f~t~i-~HPni~~~G~icl~~l-~~~W---~p~~~i~~vL 137 (182)
|..-.-- -..-.+..|+|||+.- ..-| .|.++|...|
T Consensus 94 i~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 94 IALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred eeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 9876421 1223345899999876 3446 5777776654
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00013 Score=61.54 Aligned_cols=111 Identities=22% Similarity=0.367 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC--CCCceEEEEEEcCCCCCCCCCEEE--EEEEeCCCCCCCCCcceeccc--
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG--ESIFTWIGTIEGGKGTMYEGLSYK--LSLRFPLDYPFKPPQVKFETM-- 106 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~--~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-- 106 (182)
..+.+.+...+.......+..-..+..+. .+++...++|. .+|.|.+|. +.|.+.+.||..||.+.....
T Consensus 19 ~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~ 94 (365)
T KOG2391|consen 19 DLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTST 94 (365)
T ss_pred hhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCch
Confidence 34555666666655542222222333332 24444444444 478888776 566789999999998855532
Q ss_pred ---cCCCceeCCCcEEeecCCCccC-CCCCHHHHHHHHHHhhcCCC
Q 030116 107 ---CFHPNVDQYGNICLDILQDKWS-SAYDCRTILLSIQSLLGEPN 148 (182)
Q Consensus 107 ---i~HPni~~~G~icl~~l~~~W~-p~~~i~~vL~~i~~ll~~p~ 148 (182)
-.|-+||.+|+|.|..|. +|. |+.++..+++.+.+.|.++.
T Consensus 95 M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 95 MIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred hhhHHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCC
Confidence 138999999999999994 896 66799999999999998543
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00037 Score=51.28 Aligned_cols=100 Identities=20% Similarity=0.388 Sum_probs=64.5
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCE----------EEEEEEeCCCCCCCCC
Q 030116 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLS----------YKLSLRFPLDYPFKPP 99 (182)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP 99 (182)
-+.....+||+.||+.|.. +++-..++-..|.-.-..+.||-|-|.+ |-+++++|..||..+|
T Consensus 23 rd~~~wvqrlkeey~sli~-------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap 95 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSLIA-------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP 95 (167)
T ss_pred ccchHHHHHHHHHHHHHHH-------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence 3556789999999999977 3444444555565444557788777753 4455566999999999
Q ss_pred cceecccc-CCCceeCCCcEEeec-CCCccC---CCCCHHHH
Q 030116 100 QVKFETMC-FHPNVDQYGNICLDI-LQDKWS---SAYDCRTI 136 (182)
Q Consensus 100 ~v~f~t~i-~HPni~~~G~icl~~-l~~~W~---p~~~i~~v 136 (182)
.+....-- -.-..+..|+|||.- .+.-|. |..+|...
T Consensus 96 eialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 96 EIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred cccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 98654210 011234589999854 456674 55555443
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.54 E-value=0.046 Score=40.15 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCeEEEecCCCCceEEEEEEc--CCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCcE--EeecC-----
Q 030116 53 LGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNI--CLDIL----- 123 (182)
Q Consensus 53 ~g~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~i--cl~~l----- 123 (182)
.|+.++.+.+.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|.+.+..|-.... .+|.| |-+..
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46777777666667765 666 55667999999999999999999999988877633211 11222 22111
Q ss_pred ---------CCccCCCC-CHHHHHHHHHHhhc
Q 030116 124 ---------QDKWSSAY-DCRTILLSIQSLLG 145 (182)
Q Consensus 124 ---------~~~W~p~~-~i~~vL~~i~~ll~ 145 (182)
...|.|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 24688877 78888888877664
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.90 E-value=0.025 Score=39.83 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEc--CCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 37 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEG--GKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 37 ~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
.+...|+..|+. .-+..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...++..
T Consensus 4 e~~~~EieaL~s-Iy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~ 75 (113)
T PF05773_consen 4 EQQEEEIEALQS-IYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKN 75 (113)
T ss_dssp HHHHHHHHHHHH-HSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESS
T ss_pred HHHHHHHHHHHH-HcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCC
Confidence 466778888876 323222 22223444556666632 23334445689999999999999999998776544
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.85 E-value=0.18 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=22.4
Q ss_pred CCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116 80 EGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
..-.+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987653
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.23 E-value=0.094 Score=40.43 Aligned_cols=60 Identities=22% Similarity=0.368 Sum_probs=49.0
Q ss_pred EEEEeCCCCCCCCCcceeccccC---CCceeCC-----CcEEeecC-CCccCCCCCHHHHHHHHHHhhc
Q 030116 86 LSLRFPLDYPFKPPQVKFETMCF---HPNVDQY-----GNICLDIL-QDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 86 ~~i~fp~~YP~~pP~v~f~t~i~---HPni~~~-----G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~ 145 (182)
+.|.|+.+||..+|.+.+.-+.| +|+++.. ..+|+.-- ...|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 66899999999999877776533 5778775 67998655 3679999999999999999885
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.38 E-value=2.8 Score=39.75 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCC-CCCcceeccc
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPF-KPPQVKFETM 106 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 106 (182)
..+-|..|+.-+.. ...++.++..+-.-..-.+.+.||-.---.....++.|.||.+||. .+|++.|..+
T Consensus 421 ~pQnLgeE~S~Ig~--k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGV--KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhc--cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 45567777776653 4555655544444456677777755433223456899999999999 6788988854
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=80.90 E-value=3.2 Score=34.95 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
....++|.+|+.++.. +.. +.+ -.++++...++.+..- .-...++|.++.+||.++|.+...-++ .
T Consensus 98 ~~~ys~ll~EIe~IGW-~kl--~~i-~~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~-~--- 163 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGW-DKL--VQI-QFDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI-P--- 163 (291)
T ss_dssp -GGC-CHHHHHHHHHC-GCC--EEE-EE-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS-----
T ss_pred cHHHHHHHHHHHHhcc-ccc--eEE-ecCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc-c---
Confidence 4466788889998865 222 122 1367888888888732 247789999999999999975433322 0
Q ss_pred eCCCcEEeecCCCccCC-CCCHHHHHHHHHHhh
Q 030116 113 DQYGNICLDILQDKWSS-AYDCRTILLSIQSLL 144 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll 144 (182)
+...|.+ ..++.+|+...+..|
T Consensus 164 ----------~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 164 ----------FSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ----------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ----------hhhhhcccccCHHHHHHHHHHHH
Confidence 1136877 668888777766666
No 37
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=72.27 E-value=38 Score=31.37 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCCCCCCCCccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhCCCCCeEEEec----CCCCceEEEEEEcCCCC
Q 030116 2 EVRPNPTVENLRATAAASSKQPVSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPE----GESIFTWIGTIEGGKGT 77 (182)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~----~~~~~~w~~~i~Gp~~t 77 (182)
|++..+.+..+........+.+.. ...+..+..-.-|++|+..|.. .|.|.++ ++|--+..|.|. -+.-
T Consensus 588 F~P~~t~i~g~~iTapV~~~~~r~-~e~~~rq~lp~vlqgElarLD~-----kF~v~ld~~~~~nN~I~liCkld-dk~l 660 (742)
T KOG4274|consen 588 FLPNPTPIDGLQITAPVGANSMRA-GEPVQRQNLPEVLQGELARLDA-----KFEVDLDHQRHDNNHIILICKLD-DKQL 660 (742)
T ss_pred ccCCCccccCCCcccccccccCCC-CCchhhhhhhHHHHHHHHhhcc-----ceeecCCcccccCCeeEEEEEec-CCCC
Confidence 455556666666655543333222 1222245566678889887754 5555554 234222333333 2223
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCc
Q 030116 78 MYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 78 py~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p 152 (182)
| -+++.+|.+||. |.+|.+..- .+..++-+.+|=.++++=|..|...+.
T Consensus 661 P------Pl~lsVP~~YPa-------------------q~~~vdr~~-~y~a~pflq~vq~s~~~RlsrP~~~Si 709 (742)
T KOG4274|consen 661 P------PLRLSVPTTYPA-------------------QNVTVDRAV-IYLAAPFLQDVQNSVYERLSRPGLSSI 709 (742)
T ss_pred C------Ceeeeccccccc-------------------cchhhhhHH-HhhhcHHHHHHHHHHHHHHccCCcchH
Confidence 3 388999999995 345554321 124455567777777777777776654
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=68.84 E-value=13 Score=29.84 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=25.1
Q ss_pred CceEEEEEEcCCCC--CCCCCEEEEEEEeCCCCCCCCCcc
Q 030116 64 IFTWIGTIEGGKGT--MYEGLSYKLSLRFPLDYPFKPPQV 101 (182)
Q Consensus 64 ~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v 101 (182)
...+.+.|.-..+. -|.| .+.+.+.++.+||..+|.+
T Consensus 30 ~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 30 PPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred CccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence 33366666522221 1222 7889999999999999999
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=68.74 E-value=13 Score=31.84 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=43.3
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCcceecc-ccCCCceeCCCcEEeecCCCccCCCC--CHHHHHHHHHHhh
Q 030116 78 MYEGLSYKLSLRFPLDYPFKPPQVKFET-MCFHPNVDQYGNICLDILQDKWSSAY--DCRTILLSIQSLL 144 (182)
Q Consensus 78 py~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPni~~~G~icl~~l~~~W~p~~--~i~~vL~~i~~ll 144 (182)
||.|-..+-+|.|...||..||.+.|.. .-|+|... . +..| .+|.+.- .+..++..|+.+.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~~~Y 124 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELRQLY 124 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHHHHH
Confidence 5889999999999999999999999973 35888432 1 2223 4786654 5566666655443
No 40
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=62.31 E-value=14 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=24.6
Q ss_pred ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCc
Q 030116 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p 152 (182)
||+.+|.||+.... .|......-+..+...|.+-...++
T Consensus 99 NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 99 NVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred ccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 99999999997643 2445445557777655554334444
No 41
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=58.45 E-value=18 Score=29.43 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=26.4
Q ss_pred ceeCCCcEEeecCCCccCCCC-CHHHHHHHHHHhhcCCCCCCc
Q 030116 111 NVDQYGNICLDILQDKWSSAY-DCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~-~i~~vL~~i~~ll~~p~~~~p 152 (182)
||+.+|+||+.... .|.. ++.+ +......|.+-.+.+|
T Consensus 140 NV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 140 NVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred ccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 99999999997663 4444 5666 8888777765444433
No 42
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.25 E-value=17 Score=28.76 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.9
Q ss_pred CCcEEeecCCCccCCCCCHHHHHHHHHHhhc
Q 030116 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~ 145 (182)
.+.+|++++..-|+|.+|++..+.-++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999877766555543
No 43
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=42.00 E-value=8.5 Score=36.89 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=0.0
Q ss_pred CEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 82 LSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 82 g~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
.+=-++|.+|.+||..+|.+.+.+.-|
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ---------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHHHh
Confidence 344588999999999999987765433
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=41.82 E-value=28 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCCEEEEEEEeCCCCC-CCCCcceecc
Q 030116 80 EGLSYKLSLRFPLDYP-FKPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 105 (182)
+.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3589999999999999 9999988763
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=40.14 E-value=31 Score=27.15 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 80 EGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
+.|.|.|+=.||--||..+|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998874
No 46
>smart00340 HALZ homeobox associated leucin zipper.
Probab=38.25 E-value=30 Score=20.57 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHh
Q 030116 35 VTQRLQKELMSLMM 48 (182)
Q Consensus 35 ~~~RL~~El~~l~~ 48 (182)
-.+||++|+.+|..
T Consensus 20 eNrRL~ke~~eLra 33 (44)
T smart00340 20 ENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHh
Confidence 46899999999986
No 47
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=34.50 E-value=74 Score=27.83 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCcEEeecCC---CccCCCC--CHHHHHHHHHHhhcCCCCCCcccHH-----HHHHhhch-HHHHHHHhhcc
Q 030116 115 YGNICLDILQ---DKWSSAY--DCRTILLSIQSLLGEPNPESPLNSY-----AAALLNNK-EGCIHMFSLSP 175 (182)
Q Consensus 115 ~G~icl~~l~---~~W~p~~--~i~~vL~~i~~ll~~p~~~~p~N~~-----a~~~~~~~-~~f~~~a~~~~ 175 (182)
+|+||+.+=- +...|.. +|.+++..|.++ .+-....-...+ +-.-|... ++|....-.+.
T Consensus 336 Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~-nd~~~~~e~~~d~~~~~aL~pyv~~Fe~F~s~l~~~~ 406 (412)
T KOG2851|consen 336 TGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL-NDEKEYTENRKDLARHGALSPYVEVFEAFVSALIKSE 406 (412)
T ss_pred CCceEeecchhhccccCcccCCcHHHHHHHHhhc-ccccccccchhhhhhccccchHHHHHHHHHHHHHHhh
Confidence 8999987652 4566665 899999999988 321111111122 22335556 77776655543
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=32.06 E-value=50 Score=25.17 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.0
Q ss_pred CCEEEEEEEeCCCCC-----CCCCcceecc
Q 030116 81 GLSYKLSLRFPLDYP-----FKPPQVKFET 105 (182)
Q Consensus 81 gg~f~~~i~fp~~YP-----~~pP~v~f~t 105 (182)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 589999999999999 7999988764
No 49
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.35 E-value=1.5e+02 Score=23.32 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcc
Q 030116 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQV 101 (182)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 101 (182)
.......+||++|++.+.+ .-...++..|.-+..-.+.+.|+--.++ ..|.++=.+-|++
T Consensus 115 a~~~k~~~~iq~EIraviR-QItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 115 ATRVKDLKRIQNEIRAVIR-QITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 3556688999999999998 7777788888777777888888755443 4455555555543
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.77 E-value=54 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.650 Sum_probs=22.0
Q ss_pred CCEEEEEEEeCCCCCCCCCcceecc
Q 030116 81 GLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 81 gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
+-.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 4568899999999999999999875
No 51
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=30.44 E-value=1.6e+02 Score=23.63 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCC-CCCCCEEEEEEEeCCCC-----------------
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGT-MYEGLSYKLSLRFPLDY----------------- 94 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~t-py~gg~f~~~i~fp~~Y----------------- 94 (182)
.++..||...++++++ .+ .+...-|.+.++ |... -| || |.|.+.|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~-------~L---~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS 74 (235)
T PF14135_consen 8 KSPAERINEALAEYKK-------IL---TSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTS 74 (235)
T ss_pred CCHHHHHHHHHHHHHH-------HH---hcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeE
Confidence 3567888888777776 11 234445777777 4432 23 34 77777775433
Q ss_pred --CC---CCCcceeccc--cCCCceeCC
Q 030116 95 --PF---KPPQVKFETM--CFHPNVDQY 115 (182)
Q Consensus 95 --P~---~pP~v~f~t~--i~HPni~~~ 115 (182)
-. .-|.+.|.|- +.|-..++.
T Consensus 75 ~Y~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 75 SYRLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EEEEecCCceEEEEEeCCceEEEccCCC
Confidence 22 3378888873 677766663
No 52
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=29.12 E-value=91 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=20.5
Q ss_pred CCCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116 79 YEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 79 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
-+|..+.|...-|..|| .|.|.+...
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 35777888888889999 588888864
No 53
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=27.90 E-value=48 Score=26.61 Aligned_cols=56 Identities=25% Similarity=0.450 Sum_probs=44.4
Q ss_pred CCCCcceeccccCCCceeC--CCcEEeecCCCcc--CCCCCHHHHHHHHHHhhcCCCCCC
Q 030116 96 FKPPQVKFETMCFHPNVDQ--YGNICLDILQDKW--SSAYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 96 ~~pP~v~f~t~i~HPni~~--~G~icl~~l~~~W--~p~~~i~~vL~~i~~ll~~p~~~~ 151 (182)
..||.|-|-.+.|.-.||- -|-|--++...+| -|+-++.+-|..|..+|..|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999988886 5555556667777 488899999999999998776543
No 54
>PHA03200 uracil DNA glycosylase; Provisional
Probab=26.27 E-value=83 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.038 Sum_probs=23.7
Q ss_pred CceEEEEEEcCCCCCCCCCEEE-EEEEeCCCCCCCCCcceec
Q 030116 64 IFTWIGTIEGGKGTMYEGLSYK-LSLRFPLDYPFKPPQVKFE 104 (182)
Q Consensus 64 ~~~w~~~i~Gp~~tpy~gg~f~-~~i~fp~~YP~~pP~v~f~ 104 (182)
+..-+|+|.|-+ ||.||.-. +-+..+.+++. ||..+=+
T Consensus 82 ~~~vKVVIlGQD--PYh~gqA~GLaFSV~~~~~~-PpSL~NI 120 (255)
T PHA03200 82 PEDVKVVIVGQD--PYHDGSACGLAFGTVRGRSA-PPSLKNV 120 (255)
T ss_pred hhheEEEEEecC--CCCCCccceEEEEeCCCCCC-CccHHHH
Confidence 345699999966 77775322 33345677764 7776533
No 55
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=26.24 E-value=1.9e+02 Score=19.53 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=29.0
Q ss_pred ceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 65 FTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 65 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
..|.+.+.|+.+.-...-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988764455677788888888885 7666666655
No 56
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.47 E-value=77 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.5
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCcceec
Q 030116 80 EGLSYKLSLRFPLDYPF-----KPPQVKFE 104 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (182)
+.|.|.|+-.+|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 77777665
No 57
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=23.25 E-value=1.1e+02 Score=20.17 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=25.2
Q ss_pred ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcC
Q 030116 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGE 146 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~ 146 (182)
-|+++|.|.+..+..=--.++|+.++=..|...|..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 578899999999865455678999888888888775
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.21 E-value=86 Score=19.83 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=12.3
Q ss_pred CccCCCCCHHHHHHHHHHhh
Q 030116 125 DKWSSAYDCRTILLSIQSLL 144 (182)
Q Consensus 125 ~~W~p~~~i~~vL~~i~~ll 144 (182)
-+|.|.++|.++|...-...
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 38999999999998765543
No 59
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.07 E-value=94 Score=24.37 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.1
Q ss_pred CCEEEEEEEeCCCCCC-----CCCcceec
Q 030116 81 GLSYKLSLRFPLDYPF-----KPPQVKFE 104 (182)
Q Consensus 81 gg~f~~~i~fp~~YP~-----~pP~v~f~ 104 (182)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999995 66666554
No 60
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=1.8e+02 Score=26.00 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.6
Q ss_pred EEEEEEEeCCCCCC
Q 030116 83 SYKLSLRFPLDYPF 96 (182)
Q Consensus 83 ~f~~~i~fp~~YP~ 96 (182)
...+.++||.+|+.
T Consensus 210 ~k~i~vtFP~dy~a 223 (441)
T COG0544 210 EKDIKVTFPEDYHA 223 (441)
T ss_pred eeEEEEEcccccch
Confidence 35588999999997
No 61
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.67 E-value=1.5e+02 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.3
Q ss_pred CCCCceEEEEEEcCCCCCCC
Q 030116 61 GESIFTWIGTIEGGKGTMYE 80 (182)
Q Consensus 61 ~~~~~~w~~~i~Gp~~tpy~ 80 (182)
..|...|.|++.|++|++..
T Consensus 44 PGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred CCCCcceEEEEECCCCccee
Confidence 46778899999999988655
No 62
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=21.48 E-value=2e+02 Score=23.90 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCCceEEEEEEcCCCCCCCC---CEEEEEEEeC-----CCCCCCCCcceeccccC
Q 030116 62 ESIFTWIGTIEGGKGTMYEG---LSYKLSLRFP-----LDYPFKPPQVKFETMCF 108 (182)
Q Consensus 62 ~~~~~w~~~i~Gp~~tpy~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 108 (182)
.|..-|++.....+.....| ..|+.++.+. .+-||++|+|+.+++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 35556777776433333333 2355666654 78999999999999855
Done!