Query 030116
Match_columns 182
No_of_seqs 141 out of 1134
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 6.1E-50 2.1E-54 304.1 16.8 147 32-179 2-149 (151)
2 1zdn_A Ubiquitin-conjugating e 100.0 1.5E-49 5.1E-54 304.1 15.2 148 31-179 10-158 (158)
3 2ayv_A Ubiquitin-conjugating e 100.0 3.5E-49 1.2E-53 304.1 16.1 145 34-179 21-166 (166)
4 2c2v_B Ubiquitin-conjugating e 100.0 9.6E-50 3.3E-54 303.9 12.7 145 34-179 5-150 (154)
5 1z2u_A Ubiquitin-conjugating e 100.0 3.3E-49 1.1E-53 299.7 15.5 147 32-179 2-149 (150)
6 2e2c_A Ubiquitin conjugating e 100.0 3.8E-49 1.3E-53 301.2 15.8 145 33-179 8-153 (156)
7 1i7k_A Ubiquitin-conjugating e 100.0 3.1E-49 1E-53 307.6 14.5 146 31-178 27-173 (179)
8 2c4o_A Ubiquitin-conjugating e 100.0 9E-49 3.1E-53 301.6 16.9 147 32-179 17-164 (165)
9 1ayz_A UBC2, ubiquitin-conjuga 100.0 6.1E-49 2.1E-53 303.6 15.8 145 34-179 4-149 (169)
10 3h8k_A Ubiquitin-conjugating e 100.0 1.2E-48 4.2E-53 300.6 16.4 144 34-178 3-161 (164)
11 2aak_A UBC1, ubiquitin conjuga 100.0 1E-48 3.5E-53 297.6 15.7 145 34-179 4-149 (152)
12 2r0j_A Ubiquitin carrier prote 100.0 3.9E-49 1.3E-53 299.0 13.2 143 36-179 3-146 (149)
13 1yh2_A HSPC150 protein similar 100.0 1.8E-48 6.3E-53 301.0 17.1 147 32-179 2-153 (169)
14 2ucz_A UBC7, ubiquitin conjuga 100.0 1.7E-48 6E-53 300.0 16.4 146 33-179 3-163 (165)
15 3bzh_A Ubiquitin-conjugating e 100.0 1.4E-48 4.7E-53 307.4 15.6 146 33-179 47-193 (194)
16 1fxt_A Ubiquitin-conjugating e 100.0 6.1E-49 2.1E-53 298.0 12.4 144 35-179 2-148 (149)
17 1jat_A Ubiquitin-conjugating e 100.0 4.5E-49 1.6E-53 300.5 11.0 144 35-179 6-150 (155)
18 3rcz_B SUMO-conjugating enzyme 100.0 2.6E-48 8.7E-53 298.5 15.2 148 31-179 7-162 (163)
19 2bep_A Ubiquitin-conjugating e 100.0 9.2E-48 3.2E-52 294.4 16.5 147 32-179 6-157 (159)
20 2f4z_A Tgtwinscan_2721 - E2 do 100.0 7.6E-48 2.6E-52 302.9 14.5 147 32-179 30-191 (193)
21 2pwq_A Ubiquitin conjugating e 100.0 8.5E-48 2.9E-52 307.2 14.2 147 32-179 21-169 (216)
22 2gjd_A Ubiquitin-conjugating e 100.0 1.7E-47 5.7E-52 292.4 15.2 145 34-179 4-156 (157)
23 2grr_A Ubiquitin-conjugating e 100.0 3.9E-47 1.3E-51 291.5 15.1 147 32-179 5-159 (161)
24 3rz3_A Ubiquitin-conjugating e 100.0 4.2E-47 1.5E-51 296.7 15.3 148 30-178 3-171 (183)
25 1wzv_A Ubiquitin-conjugating e 100.0 3.1E-47 1.1E-51 290.3 14.0 144 34-179 4-150 (155)
26 3k9o_A Ubiquitin-conjugating e 100.0 3.4E-47 1.2E-51 301.3 14.4 145 34-179 5-154 (201)
27 2awf_A Ubiquitin-conjugating e 100.0 3.7E-47 1.3E-51 294.4 14.0 143 31-174 14-172 (172)
28 3fn1_B NEDD8-conjugating enzym 100.0 6.1E-47 2.1E-51 291.9 14.8 148 30-179 10-166 (167)
29 1yrv_A Ubiquitin-conjugating l 100.0 9.5E-47 3.3E-51 291.2 14.5 141 34-176 23-167 (169)
30 3e46_A Ubiquitin-conjugating e 100.0 2.2E-46 7.4E-51 305.2 16.5 147 32-179 55-206 (253)
31 1y8x_A Ubiquitin-conjugating e 100.0 6.7E-46 2.3E-50 284.3 15.1 143 33-179 5-149 (160)
32 2nvu_C NEDD8-conjugating enzym 100.0 7.8E-46 2.7E-50 288.7 15.6 147 29-179 21-169 (180)
33 2y9m_A Ubiquitin-conjugating e 100.0 1.6E-45 5.5E-50 285.2 17.0 148 32-179 4-167 (172)
34 1tte_A Ubiquitin-conjugating e 100.0 6.5E-47 2.2E-51 301.9 9.3 144 35-179 3-149 (215)
35 2onu_A Ubiquitin-conjugating e 100.0 1.2E-46 4E-51 286.3 7.7 141 35-179 3-146 (152)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 5.5E-46 1.9E-50 283.1 10.0 144 34-179 2-148 (154)
37 2z5d_A Ubiquitin-conjugating e 100.0 6.7E-46 2.3E-50 288.5 9.7 141 34-179 25-168 (179)
38 3o2u_A NEDD8-conjugating enzym 100.0 1.4E-44 4.9E-49 283.8 14.6 147 30-180 25-179 (190)
39 4ddg_A Ubiquitin-conjugating e 100.0 4E-44 1.4E-48 309.3 15.9 146 33-179 2-148 (399)
40 1yf9_A Ubiquitin carrier prote 100.0 1.1E-44 3.7E-49 280.2 9.8 141 34-179 12-155 (171)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.5E-43 5E-48 273.0 10.6 139 34-173 8-164 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 3.4E-42 1.1E-46 262.6 9.8 130 33-164 20-156 (156)
43 2fo3_A Ubiquitin-conjugating e 100.0 1.9E-41 6.3E-46 249.9 13.4 119 31-150 3-122 (125)
44 2h2y_A Ubiquitin-conjugating e 100.0 1.4E-40 4.7E-45 248.5 15.3 118 31-149 17-135 (136)
45 2a4d_A Ubiquitin-conjugating e 100.0 1E-40 3.5E-45 255.1 13.0 125 33-158 24-156 (160)
46 1jat_B Ubiquitin-conjugating e 100.0 1.2E-41 4.2E-46 254.8 6.0 127 33-161 5-138 (138)
47 3ceg_A Baculoviral IAP repeat- 100.0 2.8E-40 9.7E-45 276.4 13.6 150 29-179 71-242 (323)
48 2hlw_A Ubiquitin-conjugating e 100.0 2.9E-40 9.9E-45 255.1 11.3 125 33-158 34-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 2.7E-39 9.3E-44 241.3 10.8 109 36-145 24-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 4.7E-38 1.6E-42 246.2 13.7 119 31-152 11-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 2.7E-38 9.1E-43 247.3 5.7 129 21-150 14-159 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 6.2E-28 2.1E-32 182.9 5.2 120 29-163 27-161 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.1E-19 3.9E-24 138.4 9.6 114 37-151 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 1E-19 3.5E-24 135.1 4.2 100 31-137 31-145 (168)
55 3obq_A Tumor susceptibility ge 99.6 1.7E-14 5.9E-19 108.0 9.3 100 40-145 26-137 (146)
56 2ebm_A RWD domain-containing p 96.4 0.039 1.3E-06 39.2 9.9 68 35-105 11-78 (128)
57 2yz0_A Serine/threonine-protei 95.3 0.18 6.1E-06 36.2 9.7 71 33-105 9-85 (138)
58 2day_A Ring finger protein 25; 95.1 0.15 5.2E-06 36.0 8.6 68 38-106 12-83 (128)
59 2daw_A RWD domain containing p 94.6 0.51 1.7E-05 34.7 10.7 23 83-105 76-98 (154)
60 3zqs_A E3 ubiquitin-protein li 94.2 0.41 1.4E-05 36.6 9.4 82 38-144 5-86 (186)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 93.9 0.38 1.3E-05 34.3 8.5 70 34-105 10-86 (137)
62 2ebk_A RWD domain-containing p 93.0 0.25 8.5E-06 35.0 6.2 66 38-105 11-79 (128)
63 2dax_A Protein C21ORF6; RWD do 88.1 0.36 1.2E-05 35.3 3.2 24 83-106 74-97 (152)
64 2cwb_A Chimera of immunoglobul 68.2 1.1 3.6E-05 31.3 0.0 27 149-175 23-50 (108)
65 3u3c_B Paxillin LD2 peptide; 4 44.7 18 0.00062 17.8 2.2 21 34-55 5-25 (26)
66 2bum_A Protocatechuate 3,4-dio 23.8 55 0.0019 25.0 3.0 26 80-105 109-139 (209)
67 2jrw_A Cyclic extended PEP.1; 21.9 48 0.0016 16.2 1.5 17 95-111 4-20 (26)
68 2yzh_A Probable thiol peroxida 20.2 75 0.0026 22.2 3.0 34 111-144 138-171 (171)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=6.1e-50 Score=304.09 Aligned_cols=147 Identities=39% Similarity=0.690 Sum_probs=143.4
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 a~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 80 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQ-DPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN 80 (151)
T ss_dssp CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence 45789999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.+|+||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya 149 (151)
T 4gpr_A 81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYA 149 (151)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 999999999999874
No 2
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-49 Score=304.05 Aligned_cols=148 Identities=34% Similarity=0.532 Sum_probs=143.3
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 10 ~s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 88 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTA-DPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP 88 (158)
T ss_dssp SCHHHHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred cCHHHHHHHHHHHHHHHh-CCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccC
Confidence 445689999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||+.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 89 nv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 89 NVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999 999999999998873
No 3
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-49 Score=304.09 Aligned_cols=145 Identities=40% Similarity=0.684 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 21 ~~~~RL~kEl~~l~~-~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 21 GALKRINKELNDLSK-DPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp THHHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 488999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999 999999999998873
No 4
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.6e-50 Score=303.92 Aligned_cols=145 Identities=38% Similarity=0.637 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 5 ~~~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (154)
T 2c2v_B 5 GLPRRIIKETQRLLA-EPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83 (154)
T ss_dssp SCCHHHHHHHHHHHH-SCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCc
Confidence 356999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
.+|+|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a 150 (154)
T 2c2v_B 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 150 (154)
T ss_dssp TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999 999999999998875
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=3.3e-49 Score=299.74 Aligned_cols=147 Identities=39% Similarity=0.675 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 s~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGR-DPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CCHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 34588999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.+|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 149 (150)
T 1z2u_A 81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 149 (150)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 999999999998874
No 6
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-49 Score=301.19 Aligned_cols=145 Identities=54% Similarity=1.001 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 8 ~~~~~RL~kEl~~l~~-~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 86 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLM-SGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86 (156)
T ss_dssp CCHHHHHHHHHHHHHH-HCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHh-CCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence 3588999999999999 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++||+++++|.
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~ 153 (156)
T 2e2c_A 87 DQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQ 153 (156)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred ccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 78 999999999998875
No 7
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-49 Score=307.57 Aligned_cols=146 Identities=57% Similarity=0.959 Sum_probs=139.5
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 105 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMM-SGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP 105 (179)
T ss_dssp ---CHHHHHHHHHHHHHH-HCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred cChHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence 456689999999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY 178 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~ 178 (182)
||+.+|+|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +| ++|.++|+++.+++
T Consensus 106 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~ 173 (179)
T 1i7k_A 106 NVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQ 173 (179)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTT
T ss_pred ccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 88 99999999998775
No 8
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=9e-49 Score=301.58 Aligned_cols=147 Identities=39% Similarity=0.675 Sum_probs=142.7
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
.+.+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 17 ~~~~~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn 95 (165)
T 2c4o_A 17 GSMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 95 (165)
T ss_dssp CHHHHHHHHHHHHHHHS-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred CcHHHHHHHHHHHHHHh-CCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence 34689999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.+|+||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 96 V~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a 164 (165)
T 2c4o_A 96 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164 (165)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred CCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 999999999998874
No 9
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-49 Score=303.55 Aligned_cols=145 Identities=39% Similarity=0.655 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 4 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~ 82 (169)
T 1ayz_A 4 PARRRLMRDFKRMKE-DAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82 (169)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence 588999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|+++ ++|.++||+|+++|.
T Consensus 83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a 149 (169)
T 1ayz_A 83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149 (169)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999 999999999998874
No 10
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.2e-48 Score=300.60 Aligned_cols=144 Identities=33% Similarity=0.570 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.+.+||++|+++|++ +++.||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 3 ~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 3 TALKRLMAEYKQLTL-NPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 689999999999999 8999999998865 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccc
Q 030116 113 DQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYY 178 (182)
Q Consensus 113 ~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~ 178 (182)
+.+|+||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++| ++|.++||++++++
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999999996 7899999999999999999999999999999999999999 99999999998876
No 11
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1e-48 Score=297.62 Aligned_cols=145 Identities=40% Similarity=0.652 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~a~~RL~~E~~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (152)
T 2aak_A 4 PARKRLMRDFKRLQQ-DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82 (152)
T ss_dssp HHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence 588999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 QYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 149 (152)
T 2aak_A 83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSW 149 (152)
T ss_dssp TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999 999999999998874
No 12
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=3.9e-49 Score=299.03 Aligned_cols=143 Identities=42% Similarity=0.695 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCC
Q 030116 36 TQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQY 115 (182)
Q Consensus 36 ~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 115 (182)
.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~RL~kEl~~l~~-~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 3 PRRITKETQNLAN-EPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 5899999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 116 GNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 116 G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 146 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999 999999999998875
No 13
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-48 Score=300.98 Aligned_cols=147 Identities=31% Similarity=0.553 Sum_probs=142.8
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+..+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 2 s~~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (169)
T 1yh2_A 2 SMQRASRLKRELHMLAT-EPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred chHHHHHHHHHHHHHHh-CCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence 45789999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCC----CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQYGNICLDILQ----DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~~G~icl~~l~----~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.+|.|||++|+ ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 81 v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a 153 (169)
T 1yh2_A 81 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 153 (169)
T ss_dssp BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 9999999999998 8999999999999999999999999999999999999999 999999999998875
No 14
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-48 Score=300.04 Aligned_cols=146 Identities=34% Similarity=0.584 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+.+||++|+++|++ +++.||++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~a~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 81 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIK-DSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN 81 (165)
T ss_dssp HHHHHHHHHHHHHHHH-SCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred hHHHHHHHHHHHHHHh-CCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence 4689999999999999 899999999875 79999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecC-------------CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccc
Q 030116 112 VDQYGNICLDIL-------------QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVY 177 (182)
Q Consensus 112 i~~~G~icl~~l-------------~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~ 177 (182)
|+.+|+|||++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++
T Consensus 82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~ 161 (165)
T 2ucz_A 82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161 (165)
T ss_dssp BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999 68999999999999999999999999999999999999999 9999999999987
Q ss_pred cc
Q 030116 178 YH 179 (182)
Q Consensus 178 ~~ 179 (182)
+.
T Consensus 162 ~~ 163 (165)
T 2ucz_A 162 SL 163 (165)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 15
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.4e-48 Score=307.39 Aligned_cols=146 Identities=38% Similarity=0.641 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
..+.+||++||++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus 47 s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 125 (194)
T 3bzh_A 47 STSAKRIQKELADITL-DPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI 125 (194)
T ss_dssp HHHHHHHHHHHHHHHH-SCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred cHHHHHHHHHHHHHHh-CCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence 5588999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 126 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya 193 (194)
T 3bzh_A 126 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 193 (194)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999 999999999998874
No 16
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=6.1e-49 Score=297.97 Aligned_cols=144 Identities=32% Similarity=0.587 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
+.+||++|+++|++ +++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~~~RL~~El~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~ 80 (149)
T 1fxt_A 2 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80 (149)
T ss_dssp CHHHHHHHHHHHHH-CGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHh-CCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCc
Confidence 56999999999999 8999999999877 999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 81 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a 148 (149)
T 1fxt_A 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 (149)
T ss_dssp SSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred CCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999999999999999999999999999999999999 999999999998874
No 17
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.5e-49 Score=300.49 Aligned_cols=144 Identities=37% Similarity=0.612 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 114 (182)
+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 6 ~~~RL~kE~~~l~~-~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 6 LPKRIIKETEKLVS-DPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp CCHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 56999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 115 YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 115 ~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a 150 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 150 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 999999999998874
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-48 Score=298.47 Aligned_cols=148 Identities=32% Similarity=0.533 Sum_probs=140.7
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
.+..+.+||++|+++|++ ++++|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus 7 ~~~~~~~RL~kEl~~l~~-~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 7 HSSLCKTRLQEERKQWRR-DHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp --CHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CcHHHHHHHHHHHHHHHh-CCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 455799999999999999 9999999999865 9999999999999999999999999999999999999999999
Q ss_pred ccCCCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 106 MCFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 106 ~i~HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+||||||+.+|+||+++|.. +|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999975 599999999999999999999999999999999999999 999999999999874
No 19
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=9.2e-48 Score=294.38 Aligned_cols=147 Identities=33% Similarity=0.595 Sum_probs=141.0
Q ss_pred cHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+..+.+||++|+++|++ + ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 6 s~~a~~RL~kEl~~l~~-~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 6 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHh-cCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 34689999999999998 4 5789999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 109 HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 157 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 157 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999996 99999999999999999999999999999999999999999999999999 999999999998874
No 20
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-48 Score=302.86 Aligned_cols=147 Identities=39% Similarity=0.640 Sum_probs=138.0
Q ss_pred cHHHHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCC
Q 030116 32 TTSVTQRLQKELMSLMMSGGD-------------LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKP 98 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~-------------~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p 98 (182)
...+.+||++|+++|++ +++ .||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++|
T Consensus 30 ~~~a~~RL~kEl~~l~k-~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P 108 (193)
T 2f4z_A 30 TPREQARLLKELADIQQ-LQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 108 (193)
T ss_dssp --CHHHHHHHHHHHHHH-C----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCHHHHHHHHHHHHHHh-CCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence 34588999999999999 665 7999999999999999999999999999999999999999999999
Q ss_pred CcceeccccCCCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116 99 PQVKFETMCFHPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV 176 (182)
Q Consensus 99 P~v~f~t~i~HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~ 176 (182)
|+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|++
T Consensus 109 P~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~ 188 (193)
T 2f4z_A 109 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188 (193)
T ss_dssp CEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999995 99999999999999999999999999999999999999999999999999 999999999998
Q ss_pred ccc
Q 030116 177 YYH 179 (182)
Q Consensus 177 ~~~ 179 (182)
+|.
T Consensus 189 ~ya 191 (193)
T 2f4z_A 189 TFA 191 (193)
T ss_dssp HHC
T ss_pred HHc
Confidence 874
No 21
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=8.5e-48 Score=307.21 Aligned_cols=147 Identities=36% Similarity=0.677 Sum_probs=142.2
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
.+.+.+||++|+++|++ +++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 21 ~s~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 21 GSKELLRLQKELKDIEN-ENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp SCHHHHHHHHHHHHHHH-SCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred cCHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 44689999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya 169 (216)
T 2pwq_A 100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFA 169 (216)
T ss_dssp BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 995 99999999999999999999999999999999999999999999999999 999999999998875
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.7e-47 Score=292.38 Aligned_cols=145 Identities=34% Similarity=0.566 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
.+.+||++|+++|++ +++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 4 ~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 4 LCLQRLQEERKKWRK-DHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp HHHHHHHHHHHHHHH-CCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 588999999999999 899999998874 48999999999999999999999999999999999999999999999
Q ss_pred CCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 109 HPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 109 HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 156 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYS 156 (157)
T ss_dssp CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTB
T ss_pred cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999976 799999999999999999999999999999999999999 999999999998874
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=3.9e-47 Score=291.46 Aligned_cols=147 Identities=34% Similarity=0.555 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCeEEEecC-----CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116 32 TTSVTQRLQKELMSLMMSGGDLGVSAFPEG-----ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
+..+.+||++|+++|++ +++.|+.+.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 5 ~~~a~~RL~kE~~~l~~-~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 5 SGIALSRLAQERKAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CHHHHHHHHHHHHHHHH-SCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cHHHHHHHHHHHHHHHh-CCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 34689999999999999 899999998763 689999999999999999999999999999999999999999999
Q ss_pred cCCCceeCCCcEEeecCCC--ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 107 CFHPNVDQYGNICLDILQD--KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 107 i~HPni~~~G~icl~~l~~--~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||||||+.+|.||+++|.. +|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a 159 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 9999999999999999975 899999999999999999999999999999999999999 999999999998874
No 24
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.2e-47 Score=296.74 Aligned_cols=148 Identities=33% Similarity=0.589 Sum_probs=138.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+.+..+.|||++||++|++ +++.||++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 3 m~~~~a~kRL~kEl~~l~~-~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQE-EPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp --CCHHHHHHHHHHHHHHH-SCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CcchHHHHHHHHHHHHHHh-CCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 3445789999999999999 899999998 56789999999999999999999999999999999999999999999999
Q ss_pred CCceeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc------h-HHHH
Q 030116 109 HPNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN------K-EGCI 168 (182)
Q Consensus 109 HPni~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~------~-~~f~ 168 (182)
||||+.+|+||+++|. ++|+|+++|++||.+|++||.+||+++|+|.||+++|++ + ++|.
T Consensus 82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 9999999999999996 789999999999999999999999999999999999998 7 8999
Q ss_pred HHHhhccccc
Q 030116 169 HMFSLSPVYY 178 (182)
Q Consensus 169 ~~a~~~~~~~ 178 (182)
++||+++.++
T Consensus 162 ~~v~~~v~~s 171 (183)
T 3rz3_A 162 DIIRKQVLGT 171 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3.1e-47 Score=290.29 Aligned_cols=144 Identities=28% Similarity=0.498 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEE-EecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSA-FPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.+.+||++|+++|++ +++.|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 4 ~~~~RL~kEl~~l~~-~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 4 MASMRVVKELEDLQK-KPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp -CHHHHHHHHHHHHH-SCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred hHHHHHHHHHHHHHh-CCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 478999999999999 88999999 778899999999999 999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecC-CCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDIL-QDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l-~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+.+|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a 150 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 89999999999999999999999999999999999999999 999999999998874
No 26
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=3.4e-47 Score=301.28 Aligned_cols=145 Identities=34% Similarity=0.601 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116 34 SVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+.+||++|+++|++ + ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 5 ~a~~Rl~kEl~~l~~-~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 83 (201)
T 3k9o_A 5 IAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 83 (201)
T ss_dssp TTHHHHHHHHHHHHT-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccC
Confidence 478999999999998 5 368999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 111 NVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 111 ni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 84 nv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 154 (201)
T 3k9o_A 84 NISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 154 (201)
T ss_dssp TBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9996 99999999999999999999999999999999999999999999999999 999999999998874
No 27
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3.7e-47 Score=294.37 Aligned_cols=143 Identities=33% Similarity=0.557 Sum_probs=111.0
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEG-ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFH 109 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 109 (182)
+++.+.+||++|+++|++ +++.||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 14 ~~~~~~~rL~kEl~~l~~-~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H 92 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNK-NPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH 92 (172)
T ss_dssp CCCTTHHHHHHHHHHHHH-SCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred ChHHHHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence 445689999999999999 899999999875 799999999999999999999999999999999999999999999999
Q ss_pred CceeCCCcEEeecCC-------------CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-H-HHHHHHhhc
Q 030116 110 PNVDQYGNICLDILQ-------------DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-E-GCIHMFSLS 174 (182)
Q Consensus 110 Pni~~~G~icl~~l~-------------~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~-~f~~~a~~~ 174 (182)
|||+.+|+||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++| + +|.++||++
T Consensus 93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 999999999999996 6899999999999999999999999999999999999999 9 999999874
No 28
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=6.1e-47 Score=291.95 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=139.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
...+.+.+||++|+++|++ +++.||++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 10 ~~~s~~~~RL~kEl~~l~~-~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (167)
T 3fn1_B 10 RRVSVRDKLLVKEVAELEA-NLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW 87 (167)
T ss_dssp CCCCHHHHHHHHHHHHHGG-GSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred cchhHHHHHHHHHHHHHHh-CCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence 3455799999999999999 89999999865 67899999998 899999999999999999999999999999999999
Q ss_pred CCceeCCCcEEeecCCC------ccCCCCCHHHHHHHHHHhhcC-CCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 109 HPNVDQYGNICLDILQD------KWSSAYDCRTILLSIQSLLGE-PNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 109 HPni~~~G~icl~~l~~------~W~p~~~i~~vL~~i~~ll~~-p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||||+.+|+||+++|.. +|+|+++|.+||.+|++||.+ |++++|+|.|||++|++| ++|.++||+++++|.
T Consensus 88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A 166 (167)
T 3fn1_B 88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166 (167)
T ss_dssp CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 99999999999999975 799999999999999999999 799999999999999999 999999999998874
No 29
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-47 Score=291.22 Aligned_cols=141 Identities=32% Similarity=0.585 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce-
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV- 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni- 112 (182)
.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 23 ~a~~RL~kEl~~l~~-~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 101 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKE-NNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101 (169)
T ss_dssp HHHHHHHHHHHHHHH-HCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence 589999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCC--CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccc
Q 030116 113 DQYGNICLDILQ--DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPV 176 (182)
Q Consensus 113 ~~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~ 176 (182)
+.+|+||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++ +++..
T Consensus 102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~ 167 (169)
T 1yrv_A 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFN 167 (169)
T ss_dssp TTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC
T ss_pred CCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhh
Confidence 679999999998 8999999999999999999999999999999999999999 999988 76644
No 30
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.2e-46 Score=305.16 Aligned_cols=147 Identities=33% Similarity=0.595 Sum_probs=141.5
Q ss_pred cHHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 32 TTSVTQRLQKELMSLMMSG---GDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~---~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
+..+.+||++||++|++ + ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 55 s~~a~~RL~kEl~~l~~-~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLK-SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CHHHHHHHHHHHHHHHH-CHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred cHHHHHHHHHHHHHHHh-CCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 46799999999999998 5 4789999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeC-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 109 HPNVDQ-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 109 HPni~~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA 206 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 206 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 999996 99999999999999999999999999999999999999999999999999 999999999998874
No 31
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.7e-46 Score=284.30 Aligned_cols=143 Identities=30% Similarity=0.495 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCc
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPN 111 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 111 (182)
+.+.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 5 ~~~~~RL~kEl~~l---~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 5 SAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp CHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred cHHHHHHHHHHHhc---CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 46899999999999 367899998 7789999999998 999999999999999999999999999999999999999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||++.+...
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~~ 149 (160)
T 1y8x_A 81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 149 (160)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSEE
T ss_pred CCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999 999999999876543
No 32
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.8e-46 Score=288.74 Aligned_cols=147 Identities=29% Similarity=0.459 Sum_probs=138.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCeEEE-ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc
Q 030116 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAF-PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC 107 (182)
Q Consensus 29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 107 (182)
...++.+.+||++|+++| ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 21 ~~~~~~~~~RL~kEl~~l---~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i 96 (180)
T 2nvu_C 21 SKKASAAQLRIQKDINEL---NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 96 (180)
T ss_dssp CCSCCHHHHHHHHHHHTC---CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred cCCccHHHHHHHHHHHhc---CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence 344567899999999999 367899998 7789999999998 99999999999999999999999999999999999
Q ss_pred CCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 108 FHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 108 ~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
|||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||++.+...
T Consensus 97 ~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~ 169 (180)
T 2nvu_C 97 YHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169 (180)
T ss_dssp CBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred ccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999977654
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.6e-45 Score=285.21 Aligned_cols=148 Identities=24% Similarity=0.450 Sum_probs=137.0
Q ss_pred cHHHHHHHHHHHHHHHhhC-C------CC---CeEEEe-cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCc
Q 030116 32 TTSVTQRLQKELMSLMMSG-G------DL---GVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQ 100 (182)
Q Consensus 32 ~~~~~~RL~~El~~l~~~~-~------~~---g~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~ 100 (182)
+..+.+||++|+++|+++. + +. ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus 4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~ 83 (172)
T 2y9m_A 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK 83 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence 3568999999999999832 2 33 466778 68899999999999999999999999999999999999999
Q ss_pred ceecc-ccCCCcee-CCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc-h-HHHHHHHhhcc
Q 030116 101 VKFET-MCFHPNVD-QYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN-K-EGCIHMFSLSP 175 (182)
Q Consensus 101 v~f~t-~i~HPni~-~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~-~-~~f~~~a~~~~ 175 (182)
|+|.| +||||||+ .+|+|||++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ | ++|.++||+++
T Consensus 84 v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~ 163 (172)
T 2y9m_A 84 ISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFL 163 (172)
T ss_dssp EEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred EEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999 99999997 69999999998 899999999999999999999999999999999999999 8 99999999998
Q ss_pred cccc
Q 030116 176 VYYH 179 (182)
Q Consensus 176 ~~~~ 179 (182)
+++.
T Consensus 164 ~~~~ 167 (172)
T 2y9m_A 164 AERE 167 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 34
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.5e-47 Score=301.92 Aligned_cols=144 Identities=32% Similarity=0.587 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCC-CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGE-SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
+.+||++|+++|++ ++++||++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 a~~RL~kEl~~l~~-~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 3 RAKRIMKEIQAVKD-DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp THHHHHHHHHHHHT-TTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred HHHHHHHHHHHHHh-CCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 67999999999999 8999999999876 567999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 Q-YGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||.|+++|.
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA 149 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999999999999999999999999999999999999 999999999998875
No 35
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-46 Score=286.28 Aligned_cols=141 Identities=32% Similarity=0.534 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeC
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQ 114 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 114 (182)
+.+||++|+++|++ . |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 a~~Rl~kEl~~l~~-~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 3 SLTRKQCDFTKLIM-A---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp CCCHHHHTHHHHHH-H---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHhcCc-C---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 56899999999988 3 7888888999999999999999999999999999999999999999999999999999996
Q ss_pred -CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 115 -YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 115 -~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a 146 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred cCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 6899999999999999999999999 999999999998874
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.5e-46 Score=283.14 Aligned_cols=144 Identities=27% Similarity=0.594 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEe-cCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFP-EGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
.+.+||++|+++|++ +++.|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~a~~RL~kEl~~l~~-~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 79 (154)
T 1c4z_D 2 AASRRLMKELEEIRK-CGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI 79 (154)
T ss_dssp --CTTHHHHHTTCSS-SCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHh-CCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccC
Confidence 356899999999999 8889998655 5789999999998 999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+.+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 80 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (154)
T 1c4z_D 80 DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148 (154)
T ss_dssp CTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-
T ss_pred CCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 999999999996 8999999999999999999999999999999999999999 999999999998874
No 37
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-46 Score=288.54 Aligned_cols=141 Identities=30% Similarity=0.561 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ .|+++.+. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 25 ~a~~RL~kEl~~l~~----~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE----SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp HHHHHHHHHHHHHHH----SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred HHHHHHHHHHHhcCc----CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 589999999999986 37888876 6789999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeecCCCccCCCCCHHHHHHH-HHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 Q-YGNICLDILQDKWSSAYDCRTILLS-IQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~vL~~-i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a 168 (179)
T 2z5d_A 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168 (179)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 9 9999999999999999999999999 9999999999999999999999999 999999999998874
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.4e-44 Score=283.81 Aligned_cols=147 Identities=31% Similarity=0.442 Sum_probs=138.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCeEEE----ecCCCCc---eEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcce
Q 030116 30 VDTTSVTQRLQKELMSLMMSGGDLGVSAF----PEGESIF---TWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVK 102 (182)
Q Consensus 30 ~~~~~~~~RL~~El~~l~~~~~~~g~~~~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 102 (182)
...+.+.+||++||++|+ .++|+++. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+
T Consensus 25 ~~~s~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~ 100 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV 100 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred CCccHHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence 344578999999999996 56899987 7889999 9999997 88899999999999999999999999999
Q ss_pred eccccCCCceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhccccccc
Q 030116 103 FETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYHF 180 (182)
Q Consensus 103 f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~~ 180 (182)
|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++| ++|.++||+|++.+..
T Consensus 101 f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~~ 179 (190)
T 3o2u_A 101 CLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGSI 179 (190)
T ss_dssp ECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCEE
T ss_pred EecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999887653
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=4e-44 Score=309.35 Aligned_cols=146 Identities=38% Similarity=0.654 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCce
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNV 112 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 112 (182)
+.+.|||++|+++|++ ++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 2 s~a~~RL~kEl~~l~~-~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 80 (399)
T 4ddg_A 2 AMALKRIHKELNDLAR-DPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80 (399)
T ss_dssp HHHHHHHHHHHHHHHH-SCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHh-CCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence 4689999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 113 DQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 113 ~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++| ++|.++||+|+++|.
T Consensus 81 ~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a 148 (399)
T 4ddg_A 81 NSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 148 (399)
T ss_dssp CTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred CCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999 999999999998874
No 40
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-44 Score=280.20 Aligned_cols=141 Identities=30% Similarity=0.545 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCcee
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVD 113 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 113 (182)
.+.+||++|+++|++ ++. ++ +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~RL~~El~~l~~-~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~ 86 (171)
T 1yf9_A 12 RSNRRREMDYMRLCN-STR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD 86 (171)
T ss_dssp -CCHHHHHHHHHHHS-SSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHh-CCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence 467999999999998 553 43 3578999999999999999999999999999999999999999999999999999
Q ss_pred C-CCcEEeecCCCccCCCCCHHHHHHHH-HHhhcCCCCCCcccHHHHHHhhch-HHHHHHHhhcccccc
Q 030116 114 Q-YGNICLDILQDKWSSAYDCRTILLSI-QSLLGEPNPESPLNSYAAALLNNK-EGCIHMFSLSPVYYH 179 (182)
Q Consensus 114 ~-~G~icl~~l~~~W~p~~~i~~vL~~i-~~ll~~p~~~~p~N~~a~~~~~~~-~~f~~~a~~~~~~~~ 179 (182)
. +|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++| ++|.++||+++++|.
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a 155 (171)
T 1yf9_A 87 ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHA 155 (171)
T ss_dssp TTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 6 99999999999999999999999997 799999999999999999999999 999999999998874
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.5e-43 Score=273.04 Aligned_cols=139 Identities=22% Similarity=0.431 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceEEEEEEcCCCCCCC--CCEEEEEEEeCCCCCCCCC
Q 030116 34 SVTQRLQKELMSLMMSGG------------DLGVSAFPEGESIFTWIGTIEGGKGTMYE--GLSYKLSLRFPLDYPFKPP 99 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~------------~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP 99 (182)
.+.|||++|+++|++ ++ ..|+.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++||
T Consensus 8 ~a~kRL~kEl~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP 86 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLE-EVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP 86 (167)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHHHHHHh-CcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCC
Confidence 467999999999998 55 67899999999999999999999999999 9999999999999999999
Q ss_pred cceeccccCCCceeCCCcEEeecCCCccCCCCCHHHHHH-HHHHhhcC--CCCCCcccHHHHHHhhch-HHHHHHHhh
Q 030116 100 QVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILL-SIQSLLGE--PNPESPLNSYAAALLNNK-EGCIHMFSL 173 (182)
Q Consensus 100 ~v~f~t~i~HPni~~~G~icl~~l~~~W~p~~~i~~vL~-~i~~ll~~--p~~~~p~N~~a~~~~~~~-~~f~~~a~~ 173 (182)
+|+|.|+||||||+.+|.||+++|.++|+|++++.++|. .|++|+.+ |++++|+|.|||++|++| ++|.++||+
T Consensus 87 ~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 87 TVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp EEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred EEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 999999999999999999999999999999999999754 67778874 899999999999999999 999999985
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.4e-42 Score=262.57 Aligned_cols=130 Identities=30% Similarity=0.429 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 33 TSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
..+.+||++|+++|++ + ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 20 ~~~~~RL~kEl~~l~~-~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~ 98 (156)
T 2q0v_A 20 VPRSFRLLDELERGQK-GNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE 98 (156)
T ss_dssp CCHHHHHHHHHHHHHC-C-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred chHHHHHHHHHHHHHh-CCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence 4578999999999999 6 78899998853 3 5999999999999999999999999999999999999999999999
Q ss_pred CCceeCCCcE---EeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhch
Q 030116 109 HPNVDQYGNI---CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNK 164 (182)
Q Consensus 109 HPni~~~G~i---cl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~~ 164 (182)
||||+.+|+| ||++|+ +|+|+++|++||.+|++||.+|++++|+|.+||.+|.+|
T Consensus 99 HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 99 MSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999999 899997 599999999999999999999999999999999999875
No 43
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-41 Score=249.87 Aligned_cols=119 Identities=31% Similarity=0.513 Sum_probs=106.2
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc-CC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH 109 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 109 (182)
+.+.+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 3 ~m~~a~~RL~kEl~~l~~-~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 81 (125)
T 2fo3_A 3 NMGNANYRIQKELHNFLN-NPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH 81 (125)
T ss_dssp ------CHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred CchHHHHHHHHHHHHHHh-CCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence 345678999999999999 8899999999999999999999999999999999999999999999999999999996 99
Q ss_pred CceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCCC
Q 030116 110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPE 150 (182)
Q Consensus 110 Pni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~ 150 (182)
|||+.+|+||+++|+++|+|+++|++||.+|++||.+|+.+
T Consensus 82 Pnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 82 THVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp TTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred CcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999875
No 44
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-40 Score=248.53 Aligned_cols=118 Identities=30% Similarity=0.504 Sum_probs=112.7
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecccc-CC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMC-FH 109 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 109 (182)
+...+.+||++|+++|++ +++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 17 ~~~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 95 (136)
T 2h2y_A 17 NLGNANYRIQKELNNFLK-NPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH 95 (136)
T ss_dssp CTTSHHHHHHHHHHHHHH-SCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred cchHHHHHHHHHHHHHHh-CCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence 333588999999999999 8999999999999999999999999999999999999999999999999999999996 99
Q ss_pred CceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhcCCCC
Q 030116 110 PNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNP 149 (182)
Q Consensus 110 Pni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~ 149 (182)
|||+.+|+||+++|+++|+|+++|.+||.+|++||.+|+.
T Consensus 96 Pnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 96 THVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999999999975
No 45
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1e-40 Score=255.12 Aligned_cols=125 Identities=28% Similarity=0.389 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 33 TSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g-~~~~~~-~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
..+.+||++|+++|++ ++++| +++.+. ++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 24 ~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp HHHHHHHHHHHHHHHS-CCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred chHHHHHHHHHHHHHh-CCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 6689999999999999 78788 778774 454 899999999999999999999999999999999999999999999
Q ss_pred CCcee-CCCcEEeecCC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030116 109 HPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 158 (182)
Q Consensus 109 HPni~-~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~-~p~~~~p~N~~a~ 158 (182)
||||+ .+|+||+++|. ++|+|+++|++||.+|++||. +||.++|+|.|||
T Consensus 103 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred eCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99999 59999999997 899999999999999999995 7999999999987
No 46
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.2e-41 Score=254.78 Aligned_cols=127 Identities=26% Similarity=0.383 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHhhC-CCCCeEEEecC-C--CCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 33 TSVTQRLQKELMSLMMSG-GDLGVSAFPEG-E--SIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~-~~~g~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
..+.+||++|+++|++ + ++.|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 5 ~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 83 (138)
T 1jat_B 5 VPRNFRLLEELEKGEK-GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83 (138)
T ss_dssp CCHHHHHHHHHHHHHC-----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred HHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence 3577999999999998 6 78899998853 3 4899999999999999999999999999999999999999999999
Q ss_pred CCceeCC-CcE--EeecCCCccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHh
Q 030116 109 HPNVDQY-GNI--CLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL 161 (182)
Q Consensus 109 HPni~~~-G~i--cl~~l~~~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~ 161 (182)
||||+.+ |.| ||++++ +|+|+++|++||.+|++||.+|++++|+|.+|+.+|
T Consensus 84 HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 84 LPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 9999995 999 999986 899999999999999999999999999999998765
No 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=276.39 Aligned_cols=150 Identities=27% Similarity=0.397 Sum_probs=137.4
Q ss_pred CCCcHHHHHHHHHHHHHHHhhCCCC----CeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceec
Q 030116 29 TVDTTSVTQRLQKELMSLMMSGGDL----GVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFE 104 (182)
Q Consensus 29 ~~~~~~~~~RL~~El~~l~~~~~~~----g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 104 (182)
+..+..+.+||++|+++|++ +++. ++.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.
T Consensus 71 ~~~s~~~~kRL~kEl~~L~k-~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 71 DANSAARARRLAQEAVTLST-SLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHH-HCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 34567899999999999999 6665 455677889999999999999999999999999999999999999999999
Q ss_pred cc-----cCCCceeCCCcEEeecCC-------CccCCCC-CHHHHHHHHHHhhc--CCCCCCcccHHH--HHHhhch-HH
Q 030116 105 TM-----CFHPNVDQYGNICLDILQ-------DKWSSAY-DCRTILLSIQSLLG--EPNPESPLNSYA--AALLNNK-EG 166 (182)
Q Consensus 105 t~-----i~HPni~~~G~icl~~l~-------~~W~p~~-~i~~vL~~i~~ll~--~p~~~~p~N~~a--~~~~~~~-~~ 166 (182)
|+ ||||||+.+|+|||++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|.++ ++
T Consensus 150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~ 229 (323)
T 3ceg_A 150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE 229 (323)
T ss_dssp CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence 98 999999999999999997 6899999 89999999999996 788899999987 6789999 99
Q ss_pred HHHHHhhcccccc
Q 030116 167 CIHMFSLSPVYYH 179 (182)
Q Consensus 167 f~~~a~~~~~~~~ 179 (182)
|.++||+++++|.
T Consensus 230 Y~~~vr~~t~k~A 242 (323)
T 3ceg_A 230 YDGNIRQATVKWA 242 (323)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=255.05 Aligned_cols=125 Identities=28% Similarity=0.389 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-eEEEec-CCC--CceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC
Q 030116 33 TSVTQRLQKELMSLMMSGGDLG-VSAFPE-GES--IFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF 108 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g-~~~~~~-~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 108 (182)
..+.+||++|+++|++ ++++| +++.+. ++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 34 ~p~~~RL~kEl~~l~~-~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 112 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQK-GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 112 (170)
T ss_dssp CCHHHHHHHHHHHHHH-CCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred CHHHHHHHHHHHHHHh-CCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence 4578999999999999 88888 677774 454 899999999999999999999999999999999999999999999
Q ss_pred CCcee-CCCcEEeecCC--CccCCCCCHHHHHHHHHHhhc-CCCCCCcccHHHH
Q 030116 109 HPNVD-QYGNICLDILQ--DKWSSAYDCRTILLSIQSLLG-EPNPESPLNSYAA 158 (182)
Q Consensus 109 HPni~-~~G~icl~~l~--~~W~p~~~i~~vL~~i~~ll~-~p~~~~p~N~~a~ 158 (182)
||||+ .+|+||+++|. ++|+|+++|++||.+|++||. +||.++|+|.|||
T Consensus 113 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 113 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred cCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99999 69999999997 899999999999999999997 5999999999986
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-39 Score=241.34 Aligned_cols=109 Identities=41% Similarity=0.729 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccC--CCc
Q 030116 36 TQRLQKELMSLMMSGGDLGVSAF--PEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCF--HPN 111 (182)
Q Consensus 36 ~~RL~~El~~l~~~~~~~g~~~~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPn 111 (182)
.+||++|+++|++ ++++|+++. +.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++| |||
T Consensus 24 ~~RL~kEl~~l~~-~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPN 102 (136)
T 2a7l_A 24 QKRLQKELLALQN-DPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH 102 (136)
T ss_dssp CHHHHHHHHHHHH-SCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred HHHHHHHHHHHHh-CCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCcc
Confidence 4999999999999 899999865 77899999999999999999999999999999999999999999999999 999
Q ss_pred eeCCCcEEeecCCCccCCCCCHHHHHHHHHHhhc
Q 030116 112 VDQYGNICLDILQDKWSSAYDCRTILLSIQSLLG 145 (182)
Q Consensus 112 i~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll~ 145 (182)
|+.+|+||+++|+++|+|+++|++||.+|++||.
T Consensus 103 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 103 VYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp BCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-38 Score=246.16 Aligned_cols=119 Identities=30% Similarity=0.500 Sum_probs=104.9
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCC
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHP 110 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 110 (182)
.+..+.+||++|+++|++ ++++||.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||
T Consensus 11 ~~~~a~~RL~kEl~~l~~-~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~ 87 (187)
T 2f4w_A 11 APTTATQRLKQDYLRIKK-DPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG 87 (187)
T ss_dssp ---CHHHHHHHHHHHHHH-SCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred CccHHHHHHHHHHHHHHh-CCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence 344688999999999999 899999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceeCCCcEEeecC---CCccCCCCCHHHHHHHHHHhhcCCCCCCc
Q 030116 111 NVDQYGNICLDIL---QDKWSSAYDCRTILLSIQSLLGEPNPESP 152 (182)
Q Consensus 111 ni~~~G~icl~~l---~~~W~p~~~i~~vL~~i~~ll~~p~~~~p 152 (182)
||+.+|+|||++| .++|+|+++|.+||.+|++||.+|+++..
T Consensus 88 ~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp SBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred eeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999 68999999999999999999999887644
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=2.7e-38 Score=247.33 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEcC-CCCCCCC-----------CEEE
Q 030116 21 KQPVSSPNTVDTTSVTQRLQKELMSLMMSGG---DLGVSAFPEGESIFTWIGTIEGG-KGTMYEG-----------LSYK 85 (182)
Q Consensus 21 ~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~---~~g~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~ 85 (182)
.+.........+..+.+||++||++|++ ++ +.|+++.++++|+++|+++|.|| ++|||+| |.|+
T Consensus 14 ~~~~~~g~~~~s~~a~~RL~kEl~~l~~-~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~ 92 (186)
T 1zuo_A 14 LVPRGSGAVSGSVQASDRLMKELRDIYR-SQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 92 (186)
T ss_dssp ----------CCHHHHHHHHHHHHHHHT-SHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEE
T ss_pred cccccCCcccccHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEE
Confidence 3333444445566799999999999998 76 68899999999999999999997 8999998 8999
Q ss_pred EEEEeCCCCCCCCCcceeccccCCC-ceeCCCcEEeecCC-CccCCCCCHHHHHHHHHHhhcCCCCC
Q 030116 86 LSLRFPLDYPFKPPQVKFETMCFHP-NVDQYGNICLDILQ-DKWSSAYDCRTILLSIQSLLGEPNPE 150 (182)
Q Consensus 86 ~~i~fp~~YP~~pP~v~f~t~i~HP-ni~~~G~icl~~l~-~~W~p~~~i~~vL~~i~~ll~~p~~~ 150 (182)
++|.||++||++||+|+|.+++||| ||+.+|.|||++|. ++|+|+++|++||.+|++||.+|+.+
T Consensus 93 l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~ 159 (186)
T 1zuo_A 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR 159 (186)
T ss_dssp EEEECCTTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence 9999999999999999999999999 69999999999996 79999999999999999999988754
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=6.2e-28 Score=182.87 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=102.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC----------EEEEEEEeCCCCCCCC
Q 030116 29 TVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKP 98 (182)
Q Consensus 29 ~~~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~p 98 (182)
.-+.....+||++|++.|++ ++.+..+|++.|.+.+.||+||+|+|| .|.++|.||++||.+|
T Consensus 27 p~~~~~w~~RL~eE~k~L~k-------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~P 99 (172)
T 2z6o_A 27 PRDRELWVQRLKEEYQSLIR-------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTA 99 (172)
T ss_dssp TTCTHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSC
T ss_pred CCccHHHHHHHHHHHHHHHH-------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCC
Confidence 44567899999999999998 466778899999999999999999999 9999999999999999
Q ss_pred Ccceeccc-cCCCceeCCCcEEeecC-CC---ccCCCCCHHHHHHHHHHhhcCCCCCCcccHHHHHHhhc
Q 030116 99 PQVKFETM-CFHPNVDQYGNICLDIL-QD---KWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNN 163 (182)
Q Consensus 99 P~v~f~t~-i~HPni~~~G~icl~~l-~~---~W~p~~~i~~vL~~i~~ll~~p~~~~p~N~~a~~~~~~ 163 (182)
|+|+|.++ +|||||+.+|+|||+++ +. .|+|.++|.++|.- ....++..|+..+...
T Consensus 100 PeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 100 PEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK 161 (172)
T ss_dssp CCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred CeeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence 99999998 99999999999999999 44 45599999999842 2233466666666544
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.80 E-value=1.1e-19 Score=138.39 Aligned_cols=114 Identities=23% Similarity=0.329 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhCCC--CCeEEEecCCCCceEEEEEEcCCCCCCCCCE---EEEEEEeCCCCCCCCCcceeccc-----
Q 030116 37 QRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLS---YKLSLRFPLDYPFKPPQVKFETM----- 106 (182)
Q Consensus 37 ~RL~~El~~l~~~~~~--~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----- 106 (182)
+|..+|+..+.+..+. +...++..+|....+-+.+.|.-..+|+||. |.+.|.||.+||++||.+.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 4667787777652332 2233455567777788888887779999999 88999999999999999988651
Q ss_pred -----cC-CCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhcCCCCCC
Q 030116 107 -----CF-HPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLGEPNPES 151 (182)
Q Consensus 107 -----i~-HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~~p~~~~ 151 (182)
|+ |||||.+|+||+++|. +|++ +.++.+||.+|.++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 9999999999999994 7999 6899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.77 E-value=1e-19 Score=135.05 Aligned_cols=100 Identities=22% Similarity=0.423 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCC----------EEEEEEEeCCCCCCCCCc
Q 030116 31 DTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGL----------SYKLSLRFPLDYPFKPPQ 100 (182)
Q Consensus 31 ~~~~~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~ 100 (182)
+.....+||+.||..|-+ ++....++-..|...+.|++||+|.|+ .|.++++||.+||..||.
T Consensus 31 d~~~w~~RlkeEy~alI~-------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe 103 (168)
T 3kpa_A 31 DGDKWTARLKEEYASLIT-------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE 103 (168)
T ss_dssp STHHHHHHHHHHHHHHHH-------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred CHHHHHHHHHHHHHHHHH-------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence 456799999999999988 566666677799999999999999999 999999999999999999
Q ss_pred ceeccc-cCCCceeCCCcEEeecC-CCcc---CCCCCHHHHH
Q 030116 101 VKFETM-CFHPNVDQYGNICLDIL-QDKW---SSAYDCRTIL 137 (182)
Q Consensus 101 v~f~t~-i~HPni~~~G~icl~~l-~~~W---~p~~~i~~vL 137 (182)
|+|.+. .+|||++.+|+|||++. ..-| .|.++|...|
T Consensus 104 I~Fp~ldgkt~kmYr~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 104 IALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp CBCGGGTTTCSSEETTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred eecccccCcCccccCCCcEEeccccchhhHhcCCchhHHHHH
Confidence 999995 89999999999999987 2223 3445665543
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.55 E-value=1.7e-14 Score=108.00 Aligned_cols=100 Identities=24% Similarity=0.407 Sum_probs=78.9
Q ss_pred HHHHHHHHhhCCCCCeEEEe---cCCCCceEEEEEEcCCCCCCCCCEEEE--EEEeCCCCCCCCCcceeccc------cC
Q 030116 40 QKELMSLMMSGGDLGVSAFP---EGESIFTWIGTIEGGKGTMYEGLSYKL--SLRFPLDYPFKPPQVKFETM------CF 108 (182)
Q Consensus 40 ~~El~~l~~~~~~~g~~~~~---~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~ 108 (182)
.+|+..+.+.-+........ ...++..|.++|. .+|+|+.|.+ .|.||++||++||.+ |+++ ..
T Consensus 26 ~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~ 100 (146)
T 3obq_A 26 VRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKT 100 (146)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECC
T ss_pred HHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECC
Confidence 45666665522322222211 1358889999998 5799999994 999999999999999 7766 58
Q ss_pred CCceeCCCcEEeecCCCccCC-CCCHHHHHHHHHHhhc
Q 030116 109 HPNVDQYGNICLDILQDKWSS-AYDCRTILLSIQSLLG 145 (182)
Q Consensus 109 HPni~~~G~icl~~l~~~W~p-~~~i~~vL~~i~~ll~ 145 (182)
|||||.+|+||+++|. +|++ ..++.++|..++++|.
T Consensus 101 ~~~Vd~~G~i~lpyL~-~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 101 GKHVDANGKIYLPYLH-EWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp BTTBCTTCBBCCHHHH-TCCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEeccccc-ccCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999995 4987 7899999999999997
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.38 E-value=0.039 Score=39.23 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 35 VTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 35 ~~~RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
...+...|+.-|+. .-+..+.+. .+....+.+.|..-.+..-..-.+.+.|.||.+||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~s-Iy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALES-IYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHH-HCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHH-HccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45566789988886 333444332 223456666665322222233478899999999999999987654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.18 Score=36.17 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEecC------CCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 33 TSVTQRLQKELMSLMMSGGDLGVSAFPEG------ESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 33 ~~~~~RL~~El~~l~~~~~~~g~~~~~~~------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
.....+-..|+.-|+. .-+..+.+.... +....+.+.|.+..+ .-..-.+.+.|.+|.+||..+|.|.+.+
T Consensus 9 ~~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 9 DQYYEIQCNELEAIRS-IYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHHHT-TSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred cchHHHHHHHHHHHHH-HChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 3445566788888876 433333322111 124567777773222 2123478899999999999999998754
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=95.07 E-value=0.15 Score=36.01 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecC--CCCceEEEEEEcCCCCCC--CCCEEEEEEEeCCCCCCCCCcceeccc
Q 030116 38 RLQKELMSLMMSGGDLGVSAFPEG--ESIFTWIGTIEGGKGTMY--EGLSYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 38 RL~~El~~l~~~~~~~g~~~~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
....|+.-|+. .-+..+.+.... .....+.+.|..+.+..- ..-.+.+.|.||.+||..+|.|...+.
T Consensus 12 ~~~~EleaL~S-IY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLES-IYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHH-HSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHH-HCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 46788888876 434445443221 123445555542222111 124788999999999999999987764
No 59
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.62 E-value=0.51 Score=34.69 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEEeCCCCCCCCCcceecc
Q 030116 83 SYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
.+.++|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999997655
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.16 E-value=0.41 Score=36.63 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceeccccCCCceeCCCc
Q 030116 38 RLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFETMCFHPNVDQYGN 117 (182)
Q Consensus 38 RL~~El~~l~~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~ 117 (182)
+|.+|+.++-= + .+.-.+.++...++.+.... |....++|.++.+||.++|.+...-|.- .
T Consensus 5 ~li~Ei~~iGW-~-----~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~~--~------ 65 (186)
T 3zqs_A 5 SLIEEIGTLGW-D-----KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPVP--F------ 65 (186)
T ss_dssp SHHHHHHHHCG-G-----GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSSC--C------
T ss_pred HHHHHHHHhCC-c-----eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCCC--c------
Confidence 57788887621 0 13334678889999888544 6789999999999999999876555531 1
Q ss_pred EEeecCCCccCCCCCHHHHHHHHHHhh
Q 030116 118 ICLDILQDKWSSAYDCRTILLSIQSLL 144 (182)
Q Consensus 118 icl~~l~~~W~p~~~i~~vL~~i~~ll 144 (182)
.-.|++..++.+++.+++..|
T Consensus 66 ------~~~w~~~ssL~~v~~qF~~~L 86 (186)
T 3zqs_A 66 ------CASWTPQSSLISIYSQFLAAI 86 (186)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHHH
T ss_pred ------ccccCCCccHHHHHHHHHHHH
Confidence 137998899988888777766
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.89 E-value=0.38 Score=34.27 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEecCC-----CCceEEEEEEcCCC-C-CCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 34 SVTQRLQKELMSLMMSGGDLGVSAFPEGE-----SIFTWIGTIEGGKG-T-MYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~~~~~~~~-----~~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
....+...|+.-|+. .-+..+....... ....+.+.|. +.+ . .-..-.+.+.|.||.+||..+|.|.+..
T Consensus 10 ~~~e~q~~EleaL~S-IY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 10 SYSQRQDHELQALEA-IYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp CHHHHHHHHHHHHHH-HTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred chHHHHHHHHHHHHH-HCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 345567888888876 3333444322111 1345666665 322 1 0012468999999999999999998743
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.01 E-value=0.25 Score=34.98 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhC-CC-CCeEEEec-CCCCceEEEEEEcCCCCCCCCCEEEEEEEeCCCCCCCCCcceecc
Q 030116 38 RLQKELMSLMMSG-GD-LGVSAFPE-GESIFTWIGTIEGGKGTMYEGLSYKLSLRFPLDYPFKPPQVKFET 105 (182)
Q Consensus 38 RL~~El~~l~~~~-~~-~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 105 (182)
....|+..|+. . +. ..+.+... ..+...+.+.|.. .+..-..-.+.+.|.+|.+||..+|.|...+
T Consensus 11 ~q~~EleaL~S-Iy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 11 PVQEELSVLAA-IFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHH-HHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHH-HcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 35678877765 2 21 12322111 1234577777763 2211112478999999999999999987653
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=88.13 E-value=0.36 Score=35.27 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEEEEeCCCCCCCCCcceeccc
Q 030116 83 SYKLSLRFPLDYPFKPPQVKFETM 106 (182)
Q Consensus 83 ~f~~~i~fp~~YP~~pP~v~f~t~ 106 (182)
.+.+.|.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999976653
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=68.19 E-value=1.1 Score=31.29 Aligned_cols=27 Identities=4% Similarity=-0.123 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHhhch-HHHHHHHhhcc
Q 030116 149 PESPLNSYAAALLNNK-EGCIHMFSLSP 175 (182)
Q Consensus 149 ~~~p~N~~a~~~~~~~-~~f~~~a~~~~ 175 (182)
...|.+.++|++|+++ +.|.+.||.|+
T Consensus 23 ~~~PQDA~VA~qy~~~~~~f~~TAr~WT 50 (108)
T 2cwb_A 23 TTEAVDAATAEKVFKQYANDNGVDGEWT 50 (108)
T ss_dssp ----------------------------
T ss_pred cCCchhHHHHHHHHhchhcccccccccc
Confidence 4578999999999999 99999999998
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=44.66 E-value=18 Score=17.81 Aligned_cols=21 Identities=29% Similarity=0.220 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCe
Q 030116 34 SVTQRLQKELMSLMMSGGDLGV 55 (182)
Q Consensus 34 ~~~~RL~~El~~l~~~~~~~g~ 55 (182)
+-+.||.-|+...+. +++.|.
T Consensus 5 seldrlllelnavqh-nppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQH-NPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhcc-CCCCCC
Confidence 467899999999998 888764
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=23.83 E-value=55 Score=25.02 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCcceecc
Q 030116 80 EGLSYKLSLRFPLDYPF-----KPPQVKFET 105 (182)
Q Consensus 80 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 105 (182)
+.|.|.|+-.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46899999999999998 788887753
No 67
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=21.87 E-value=48 Score=16.25 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=10.4
Q ss_pred CCCCCcceeccccCCCc
Q 030116 95 PFKPPQVKFETMCFHPN 111 (182)
Q Consensus 95 P~~pP~v~f~t~i~HPn 111 (182)
|..-|.-.|....|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 44455555777777764
No 68
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=20.21 E-value=75 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=23.8
Q ss_pred ceeCCCcEEeecCCCccCCCCCHHHHHHHHHHhh
Q 030116 111 NVDQYGNICLDILQDKWSSAYDCRTILLSIQSLL 144 (182)
Q Consensus 111 ni~~~G~icl~~l~~~W~p~~~i~~vL~~i~~ll 144 (182)
-||++|+|-......++....+..+++..|+.+|
T Consensus 138 liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp EECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred EEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 5677999887665444545557788888888764
Done!