BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030117
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P11001|GTF1_STRDO Glucosyltransferase-I OS=Streptococcus downei GN=gtfI PE=3 SV=1
Length = 1597
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 115 DSAFCSLECRQQQMNQDERKQKCTSHGHASASASASAAKKQAAAAASSTAARSQVSSKGE 174
DS L Q NQD + + + SAS AA QA+A ++AA +
Sbjct: 46 DSNQAVLTADQTTTNQDTEQTSVAATATSEQSASTDAATDQASATDQASAAEQTQGTTAS 105
Query: 175 RDTVA 179
DT A
Sbjct: 106 TDTAA 110
>sp|Q07889|SOS1_HUMAN Son of sevenless homolog 1 OS=Homo sapiens GN=SOS1 PE=1 SV=1
Length = 1333
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 7 PRP-PMKRTTSLSE----ISFDLDGGGDDSSSAAASHQQKNPTAALTKHPGSGGGGVDDV 61
PRP M+ T L + IS+ + S+A+A + + P LT P SG DV
Sbjct: 1045 PRPGTMRHPTPLQQEPRKISYSRIPESETESTASAPNSPRTP---LTPPPASGASSTTDV 1101
Query: 62 DQRFLSTVSSPRNNNNNNNRHSADFLET--PHFLRTCGLCKRRLVPGRD 108
F S SSP +++N+ F++ PH R+ + L G D
Sbjct: 1102 CSVFDSDHSSPFHSSNDTV-----FIQVTLPHGPRSASVSSISLTKGTD 1145
>sp|Q10353|RLP24_SCHPO Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rlp24 PE=3 SV=1
Length = 192
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 93 LRTCGLCKRRLVPGRDIYMYRGDSA---FCSLECRQQ-QMNQDERKQKCTSHGHASASAS 148
+ TC C + PG I R DS FC +C + +M ++ RK T A
Sbjct: 3 VHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWT-----KAYRK 57
Query: 149 ASAAKKQAAAAASSTAARSQVSSKGERDTVAAAV 182
A + A + TAAR V + +R+ +A +
Sbjct: 58 AHGKEMVYDTALAVTAARRNVPVRYDRNVIATTL 91
>sp|Q4JAV2|RL24E_SULAC 50S ribosomal protein L24e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl24e PE=3 SV=1
Length = 62
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 94 RTCGLCKRRLVPGRDIYMYRGDSA---FCSLECRQQ--QMNQDERKQKCT 138
R C C + ++PG + R D + FCS +CR+ ++++D +K K T
Sbjct: 5 RQCSFCGKDILPGTGLMYVRNDGSLLWFCSSKCRKSMLKLHRDPKKLKWT 54
>sp|Q9ULV0|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3
Length = 1848
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 86 FLETPHFLRTCGLCKRRLVP-------GRD-IYMYRGDSA-------FCSLECRQQQMNQ 130
FLE+ H CG+ + P G+D IY Y G + F E +QM +
Sbjct: 93 FLESNHIYTYCGIVLVAINPYEQLPIYGQDVIYTYSGQNMGDMDPHIFAVAEEAYKQMAR 152
Query: 131 DERKQKCTSHGHASASASASAA-KKQAAAAASSTAARSQVSSK 172
DE+ Q G + A + SA + A +A+ + + K
Sbjct: 153 DEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASETNIEEK 195
>sp|Q9HJ58|RL24E_THEAC 50S ribosomal protein L24e OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rpl24e PE=3 SV=1
Length = 67
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 94 RTCGLCKRRLVPGRDIYMYRGDSA---FCSLECRQQ--QMNQDERKQKCTSHGH 142
+ C C + + PG I R D A FCS +CR+ ++N+ R K T+ H
Sbjct: 5 KNCSFCGKAIEPGTGIMYVRKDGAILYFCSNKCRKNMIELNRVPRYVKWTNEYH 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.123 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,067,033
Number of Sequences: 539616
Number of extensions: 2698353
Number of successful extensions: 41476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 38951
Number of HSP's gapped (non-prelim): 2453
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)