Query 030117
Match_columns 182
No_of_seqs 133 out of 241
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2das_A Zinc finger MYM-type pr 93.5 0.046 1.6E-06 38.6 2.7 35 91-125 18-53 (62)
2 2l8e_A Polyhomeotic-like prote 89.1 0.088 3E-06 35.1 0.4 31 93-127 18-48 (49)
3 2iyb_E Testin, TESS, TES; LIM 87.9 0.29 9.9E-06 31.8 2.3 29 95-125 34-62 (65)
4 1lv3_A Hypothetical protein YA 78.8 0.79 2.7E-05 32.6 1.5 34 94-133 10-43 (68)
5 3j21_V 50S ribosomal protein L 74.8 3 0.0001 29.3 3.6 34 94-127 5-41 (66)
6 4a17_T RPL24, 60S ribosomal pr 71.7 2.9 9.8E-05 33.9 3.2 34 94-127 6-42 (158)
7 3izc_Z 60S ribosomal protein R 69.2 3.5 0.00012 33.3 3.2 35 94-128 4-41 (155)
8 2zkr_u 60S ribosomal protein L 68.7 4 0.00014 33.0 3.5 34 94-127 4-40 (157)
9 1x61_A Thyroid receptor intera 68.6 5.4 0.00018 25.7 3.6 28 95-125 35-62 (72)
10 2cur_A Skeletal muscle LIM-pro 66.4 5.9 0.0002 25.4 3.4 28 95-125 33-60 (69)
11 2xqn_T Testin, TESS; metal-bin 65.2 3.9 0.00013 29.2 2.5 28 95-124 95-122 (126)
12 1vq8_U 50S ribosomal protein L 65.0 6.1 0.00021 27.7 3.4 34 94-127 4-40 (66)
13 1x6a_A LIMK-2, LIM domain kina 63.9 6.8 0.00023 25.9 3.4 32 90-125 40-72 (81)
14 3iz5_Z 60S ribosomal protein L 62.5 4.8 0.00016 32.7 2.8 35 94-128 6-43 (162)
15 1wig_A KIAA1808 protein; LIM d 61.6 4.5 0.00015 26.7 2.2 28 95-124 33-60 (73)
16 2jtn_A LIM domain-binding prot 61.4 5.8 0.0002 30.4 3.0 30 95-125 149-178 (182)
17 1x4k_A Skeletal muscle LIM-pro 60.3 7.1 0.00024 25.0 2.9 27 95-124 35-61 (72)
18 1x64_A Alpha-actinin-2 associa 60.3 5.8 0.0002 26.9 2.6 30 90-124 50-79 (89)
19 2d8x_A Protein pinch; LIM doma 58.0 5 0.00017 25.8 1.8 28 95-125 33-60 (70)
20 2cuq_A Four and A half LIM dom 57.8 9.5 0.00033 25.0 3.3 27 95-124 43-69 (80)
21 2d8z_A Four and A half LIM dom 57.4 9.1 0.00031 24.5 3.0 27 95-124 33-59 (70)
22 2cu8_A Cysteine-rich protein 2 56.9 8 0.00027 25.3 2.7 29 95-125 38-66 (76)
23 2l3k_A Rhombotin-2, linker, LI 55.8 11 0.00038 27.1 3.6 32 90-125 35-66 (123)
24 1jjd_A Metallothionein, SMTA; 55.5 9 0.00031 26.0 2.8 32 94-127 8-39 (55)
25 1iml_A CRIP, cysteine rich int 55.2 8.8 0.0003 25.1 2.7 29 95-125 29-57 (76)
26 2egq_A FHL1 protein; LIM domai 52.6 9 0.00031 24.9 2.4 27 95-124 48-74 (77)
27 1a7i_A QCRP2 (LIM1); LIM domai 52.3 7.2 0.00025 25.8 1.9 27 95-124 36-62 (81)
28 3f6q_B LIM and senescent cell 52.2 4.7 0.00016 25.6 0.9 27 95-124 41-67 (72)
29 1wyh_A SLIM 2, skeletal muscle 51.5 12 0.00042 23.8 3.0 27 95-124 35-61 (72)
30 1v6g_A Actin binding LIM prote 50.7 8.4 0.00029 25.5 2.1 31 90-124 40-70 (81)
31 1x62_A C-terminal LIM domain p 50.2 5.5 0.00019 26.5 1.1 28 95-125 43-70 (79)
32 1x4l_A Skeletal muscle LIM-pro 49.8 9.6 0.00033 24.6 2.2 27 95-124 37-63 (72)
33 2co8_A NEDD9 interacting prote 44.6 11 0.00038 25.3 2.0 26 95-121 44-70 (82)
34 1m3v_A FLIN4, fusion of the LI 44.3 9.2 0.00031 27.5 1.6 33 89-124 30-62 (122)
35 1x63_A Skeletal muscle LIM-pro 44.0 12 0.0004 24.7 1.9 27 95-124 45-71 (82)
36 2dj7_A Actin-binding LIM prote 43.5 11 0.00037 25.4 1.7 25 95-122 44-68 (80)
37 1x3h_A Leupaxin; paxillin fami 43.4 13 0.00046 24.3 2.2 24 95-120 43-66 (80)
38 1nyp_A Pinch protein; LIM doma 43.4 12 0.0004 23.7 1.8 30 90-124 30-59 (66)
39 1x68_A FHL5 protein; four-and- 43.3 12 0.00043 24.4 2.0 24 95-120 37-60 (76)
40 2xjy_A Rhombotin-2; oncoprotei 43.2 13 0.00044 26.5 2.2 27 95-121 31-57 (131)
41 4fc8_A Transcription protein R 43.1 9.8 0.00033 32.1 1.7 44 88-131 65-123 (219)
42 2dar_A PDZ and LIM domain prot 42.5 15 0.0005 24.9 2.3 28 95-125 53-80 (90)
43 2jw6_A Deformed epidermal auto 41.6 14 0.00047 23.0 1.9 36 91-129 7-42 (52)
44 1g47_A Pinch protein; LIM doma 41.6 8.5 0.00029 25.0 0.9 24 95-120 41-64 (77)
45 2rgt_A Fusion of LIM/homeobox 41.6 13 0.00043 28.1 2.0 34 90-126 92-125 (169)
46 2l4z_A DNA endonuclease RBBP8, 41.5 8.7 0.0003 28.2 1.1 27 95-121 90-116 (123)
47 1j2o_A FLIN2, fusion of rhombo 39.3 14 0.00049 26.2 1.9 27 95-121 32-58 (114)
48 2d8y_A Eplin protein; LIM doma 38.5 15 0.0005 25.0 1.8 24 95-120 44-67 (91)
49 2ehe_A Four and A half LIM dom 36.8 18 0.00062 23.8 2.0 24 95-120 45-68 (82)
50 1wg2_A Zinc finger (AN1-like) 34.3 21 0.00071 24.9 2.0 29 91-121 13-41 (64)
51 2odd_A Protein CBFA2T1; MYND z 33.3 32 0.0011 22.4 2.7 35 92-129 16-50 (64)
52 1wfh_A Zinc finger (AN1-like) 32.5 26 0.0009 24.5 2.3 29 91-121 13-41 (64)
53 1b8t_A Protein (CRP1); LIM dom 32.3 30 0.001 26.6 2.8 28 95-125 144-171 (192)
54 2cor_A Pinch protein; LIM doma 29.9 26 0.00089 23.3 1.9 28 90-123 40-67 (79)
55 1x4w_A Hypothetical protein FL 29.4 20 0.00068 25.2 1.2 31 91-121 13-44 (67)
56 2cup_A Skeletal muscle LIM-pro 28.7 27 0.00094 23.6 1.9 24 95-120 35-58 (101)
57 1wfp_A Zinc finger (AN1-like) 27.3 34 0.0012 24.5 2.2 29 91-121 23-51 (74)
58 1rut_X Flinc4, fusion protein 27.3 30 0.001 26.6 2.0 28 95-124 99-126 (188)
59 1wfl_A Zinc finger protein 216 26.6 28 0.00095 25.0 1.6 28 92-121 24-51 (74)
60 2xjy_A Rhombotin-2; oncoprotei 26.0 37 0.0013 24.0 2.2 26 95-121 96-121 (131)
61 2dlo_A Thyroid receptor-intera 25.9 35 0.0012 22.4 1.9 24 95-120 43-67 (81)
62 2d8q_A BLU protein, zinc finge 25.2 45 0.0015 22.6 2.4 41 93-138 15-55 (70)
63 4gvb_B VP12.5, KP6 killer toxi 24.2 15 0.00051 26.5 -0.2 10 4-13 1-10 (81)
64 2yqp_A Probable ATP-dependent 23.1 59 0.002 22.6 2.7 34 96-134 22-56 (60)
65 2dj8_A Protein CBFA2T1; zinc f 22.6 38 0.0013 21.9 1.6 33 94-129 16-48 (60)
66 3u52_A Phenol hydroxylase comp 22.2 52 0.0018 30.4 2.9 41 93-133 396-446 (511)
67 2rgt_A Fusion of LIM/homeobox 21.5 49 0.0017 24.8 2.3 24 95-121 35-58 (169)
68 2jtn_A LIM domain-binding prot 21.4 43 0.0015 25.5 1.9 24 95-121 89-112 (182)
69 3qww_A SET and MYND domain-con 20.8 41 0.0014 29.4 1.9 37 91-128 47-83 (433)
70 1wff_A Riken cDNA 2810002D23 p 20.7 51 0.0017 24.1 2.1 30 91-121 23-52 (85)
71 3qwp_A SET and MYND domain-con 20.1 44 0.0015 28.9 1.9 36 92-128 46-81 (429)
No 1
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=93.45 E-value=0.046 Score=38.65 Aligned_cols=35 Identities=34% Similarity=0.681 Sum_probs=30.5
Q ss_pred hHhhccccccCCCCCCCceeEEcCC-ccccChhHHH
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGD-SAFCSLECRQ 125 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe-~AFCS~ECR~ 125 (182)
.+-..|..|||.|..|+--|-..|+ .-|||..|-.
T Consensus 18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 3567899999999999999988898 7899999954
No 2
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=89.11 E-value=0.088 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.794 Sum_probs=24.4
Q ss_pred hhccccccCCCCCCCceeEEcCCccccChhHHHHH
Q 030117 93 LRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQ 127 (182)
Q Consensus 93 L~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qq 127 (182)
+..|-.|.+.|.+.. ++-.+-|||..||...
T Consensus 18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKRY 48 (49)
T ss_dssp EEECTTTCCEEEGGG----CTTTSSSCSHHHHHHH
T ss_pred CCcChhccCcccccc----CCCCCccCCHHHHhhh
Confidence 457999999996443 3778999999999753
No 3
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=87.89 E-value=0.29 Score=31.84 Aligned_cols=29 Identities=34% Similarity=0.894 Sum_probs=23.1
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|. + ..|+-+..+.||+.+|-.
T Consensus 34 ~C~~C~~~L~-~-~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 34 LCSCCSKCLI-G-QKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp BCTTTCCBCT-T-SCCEEETTEEESSHHHHH
T ss_pred ECCCCCCcCC-C-CceEEECCEEecCHHHhh
Confidence 6889999995 3 347777789999999953
No 4
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=78.79 E-value=0.79 Score=32.56 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=22.8
Q ss_pred hccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDER 133 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~ 133 (182)
..|-.|.|... ++.-.- ..+|||..||. |.+-++
T Consensus 10 ~~CP~Cgkp~~-W~~~~~---~rPFCSeRCr~--iDLg~W 43 (68)
T 1lv3_A 10 VNCPTCGKTVV-WGEISP---FRPFCSKRCQL--IDLGEW 43 (68)
T ss_dssp EECTTTCCEEE-CSSSSS---CCSSSSHHHHH--HHHSCS
T ss_pred CcCCCCCCccc-ccccCC---CCcccCHHHHh--hhHHHH
Confidence 57999999974 222232 46999999985 554443
No 5
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.76 E-value=3 Score=29.25 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=28.7
Q ss_pred hccccccCCCCCCCceeEEcCCc---cccChhHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGDS---AFCSLECRQQQ 127 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe~---AFCS~ECR~qq 127 (182)
..|++|..+|.||.-+-.-|.|- -|||.-|+...
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 41 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYY 41 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHH
Confidence 57999999999999887777773 59999998875
No 6
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=71.70 E-value=2.9 Score=33.91 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=28.7
Q ss_pred hccccccCCCCCCCceeEEcCCc---cccChhHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGDS---AFCSLECRQQQ 127 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe~---AFCS~ECR~qq 127 (182)
..|++|..+|.||.-+..-|.|- -|||.-|+...
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f 42 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS 42 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH
Confidence 47999999999999887777773 59999997664
No 7
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=69.18 E-value=3.5 Score=33.30 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=29.0
Q ss_pred hccccccCCCCCCCceeEEcCC---ccccChhHHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGD---SAFCSLECRQQQM 128 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe---~AFCS~ECR~qqI 128 (182)
..|++|..+|.||.-+..-|.| --|||.-|.....
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~ 41 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFK 41 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHH
Confidence 4799999999999988777777 3599999977653
No 8
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=68.68 E-value=4 Score=32.97 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=28.2
Q ss_pred hccccccCCCCCCCceeEEcCC---ccccChhHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGD---SAFCSLECRQQQ 127 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe---~AFCS~ECR~qq 127 (182)
..|++|..+|.||.-|-.-|.| --|||.-|+...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f 40 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAF 40 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHH
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHH
Confidence 5799999999999987777777 459999997653
No 9
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.59 E-value=5.4 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.577 Sum_probs=20.5
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|. .+.|.-+..+.|| ..|-.
T Consensus 35 ~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~ 62 (72)
T 1x61_A 35 VCSTCRAQLR--GQHFYAVERRAYC-EGCYV 62 (72)
T ss_dssp BCSSSCCBCT--TSCEEESSSCEEE-HHHHH
T ss_pred cccccCCcCC--cCcCEeeCCeEEC-HHHHH
Confidence 5889999994 3557777789999 44543
No 10
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.36 E-value=5.9 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.714 Sum_probs=21.0
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|. .+.|.-+..+.|| ..|-.
T Consensus 33 ~C~~C~~~L~--~~~~~~~~~~~yC-~~cy~ 60 (69)
T 2cur_A 33 VCVTCSKKLA--GQRFTAVEDQYYC-VDCYK 60 (69)
T ss_dssp BCTTTCCBCT--TSCEEECSSCEEE-HHHHH
T ss_pred EECCCCCCCC--CCccEeECCEEEC-HHHhH
Confidence 5889999996 3457777789999 45643
No 11
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=65.21 E-value=3.9 Score=29.20 Aligned_cols=28 Identities=36% Similarity=0.908 Sum_probs=22.2
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|. + +.|.-+..+.||..+|.
T Consensus 95 ~C~~C~~~l~-~-~~f~~~~~~~yC~~~~~ 122 (126)
T 2xqn_T 95 LCSCCSKCLI-G-QKFMPVEGMVFCSVECK 122 (126)
T ss_dssp BCTTTCCBCT-T-SEEEEETTEEESSHHHH
T ss_pred CcCCCCCccC-C-CeeEeECCEEcchHHhh
Confidence 5888999996 4 55666788999998885
No 12
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=64.98 E-value=6.1 Score=27.70 Aligned_cols=34 Identities=29% Similarity=0.770 Sum_probs=28.4
Q ss_pred hccccccCCCCCCCceeEEcCC---ccccChhHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGD---SAFCSLECRQQQ 127 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe---~AFCS~ECR~qq 127 (182)
..|++|..+|.||.-|-.-|.| --|||.-|+...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f 40 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNA 40 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHH
Confidence 5799999999999987666766 359999999874
No 13
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.95 E-value=6.8 Score=25.87 Aligned_cols=32 Identities=25% Similarity=0.692 Sum_probs=21.9
Q ss_pred hhHhhccccccCCCCCCCceeEE-cCCccccChhHHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMY-RGDSAFCSLECRQ 125 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMY-RGe~AFCS~ECR~ 125 (182)
..| .|..|++.|..+.. |+. +..+.||. .|-.
T Consensus 40 ~CF--~C~~C~~~L~~g~~-f~~~~~~~~~C~-~c~~ 72 (81)
T 1x6a_A 40 ECF--ACMSCKVIIEDGDA-YALVQHATLYCG-KCHN 72 (81)
T ss_dssp TSC--BCTTTCCBCCTTSC-EEECSSSCEEEH-HHHH
T ss_pred ccC--CccCCCCccCCCCc-EEEeeCCEEECH-HHHH
Confidence 355 58899999976544 543 67789995 4543
No 14
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=62.48 E-value=4.8 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.573 Sum_probs=28.9
Q ss_pred hccccccCCCCCCCceeEEcCC---ccccChhHHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGD---SAFCSLECRQQQM 128 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe---~AFCS~ECR~qqI 128 (182)
..|++|..+|.||.-|..-|.| --|||.-|+...+
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~ 43 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFH 43 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHH
Confidence 4799999999999988777777 3599999976653
No 15
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.61 E-value=4.5 Score=26.73 Aligned_cols=28 Identities=25% Similarity=0.615 Sum_probs=21.1
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ +.|..++.+.||. +|-
T Consensus 33 ~C~~C~~~L~~~-~~f~~~~~~~yC~-~C~ 60 (73)
T 1wig_A 33 LCVRCGQMFAEG-EEMYLQGSSIWHP-ACR 60 (73)
T ss_dssp CCSSSCCCCCSS-CCCEEETTEEECT-THH
T ss_pred EeCCCCCCCCCC-CeeEeeCCEEECh-HHC
Confidence 688999999644 4566677899996 464
No 16
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=61.41 E-value=5.8 Score=30.40 Aligned_cols=30 Identities=27% Similarity=0.688 Sum_probs=19.3
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|..+...|+-+..+.|| ..|-.
T Consensus 149 ~C~~C~~~L~~g~~f~~~~~g~~yC-~~cy~ 178 (182)
T 2jtn_A 149 ACVVCKRQLATGDEFYLMEDSRLVC-KADYE 178 (182)
T ss_dssp CCTTTCCCCCTTCEEEECTTSCEEC-HHHHH
T ss_pred cCCCCCCCCCCCCceEEccCCEEEC-HHHHH
Confidence 5777888886555555555567888 45543
No 17
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.34 E-value=7.1 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.663 Sum_probs=19.7
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ .|.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 61 (72)
T 1x4k_A 35 ICHRCQQPIGTK--SFIPKDNQNFCV-PCY 61 (72)
T ss_dssp CCSSSCCCCCSS--SEEEETTEEEEH-HHH
T ss_pred cccccCCccCCC--ccCccCCeEECH-HHH
Confidence 588899999644 566677789995 554
No 18
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.34 E-value=5.8 Score=26.94 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=20.8
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
..| .|..|++.|..+ . |..+..+.||. +|-
T Consensus 50 ~CF--~C~~C~~~L~~~-~-~~~~~g~~yC~-~~y 79 (89)
T 1x64_A 50 ECF--VCADCNLNLKQK-G-YFFVEGELYCE-THA 79 (89)
T ss_dssp TTC--CCSSSCCCTTTS-C-CEEETTEEECH-HHH
T ss_pred cCC--EecCCCCCCCCC-C-eEeECCEEECH-HHH
Confidence 355 588999999643 3 55667789984 454
No 19
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.04 E-value=5 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.611 Sum_probs=20.8
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|..+ .|..+..+.||. .|-.
T Consensus 33 ~C~~C~~~L~~~--~f~~~~g~~yC~-~c~~ 60 (70)
T 2d8x_A 33 RCDLCQEVLADI--GFVKNAGRHLCR-PCHN 60 (70)
T ss_dssp BCSSSCCBCSSS--CCEEETTEEECH-HHHH
T ss_pred EeCCCCCcCCCC--ccEeECCeEECH-HHhh
Confidence 588999999754 477777899995 4543
No 20
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.84 E-value=9.5 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.812 Sum_probs=20.2
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|. +. .|.-+.++.|| ..|-
T Consensus 43 ~C~~C~~~L~-~~-~~~~~~~~~yC-~~cy 69 (80)
T 2cuq_A 43 VCTGCQTPLA-GQ-QFTSRDEDPYC-VACF 69 (80)
T ss_dssp BCSSSCCBCT-TC-CEEECSSSEEE-HHHH
T ss_pred CcccCCCcCC-CC-eeEeECCEEEC-HHHH
Confidence 5889999994 43 56667889999 4554
No 21
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.42 E-value=9.1 Score=24.46 Aligned_cols=27 Identities=30% Similarity=0.780 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|. ...|..+..+.||. .|-
T Consensus 33 ~C~~C~~~L~--~~~~~~~~~~~yC~-~cy 59 (70)
T 2d8z_A 33 VCTACRKQLS--GQRFTARDDFAYCL-NCF 59 (70)
T ss_dssp BCSSSCCBCT--TSCCEESSSSEECH-HHH
T ss_pred ccCCCCCcCC--cCceEeeCCeEECH-HHH
Confidence 5889999995 34677777899994 443
No 22
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.94 E-value=8 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=21.4
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|. + ..|..+..+.||...|-.
T Consensus 38 ~C~~C~~~L~-~-~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 38 KCERCSKTLT-P-GGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp BCSSSCCBCC-T-TSCEEETTEEECTTTHHH
T ss_pred CCCCCCCccC-C-CceEeECCEEecchHHHH
Confidence 5889999996 3 356677789999745643
No 23
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.81 E-value=11 Score=27.12 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=22.6
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
..| .|..|++.|..+. .|.-+..+.|| ..|-.
T Consensus 35 ~CF--~C~~C~~~L~~g~-~f~~~~g~~yC-~~cy~ 66 (123)
T 2l3k_A 35 ECF--KCAACQKHFSVGD-RYLLINSDIVC-EQDIY 66 (123)
T ss_dssp TTC--BCTTTCCBCCTTC-EEEECSSSEEE-GGGHH
T ss_pred ccC--ccccCCCCCCCCC-cEEeeCCEEEc-HHHhH
Confidence 456 5899999996554 46666779999 44543
No 24
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=55.50 E-value=9 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=22.2
Q ss_pred hccccccCCCCCCCceeEEcCCccccChhHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQ 127 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qq 127 (182)
-.|..|.=-+. .++.+ +++-+.|||++|-..+
T Consensus 8 CaC~~C~c~Vs-~~eai-~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 8 CACEPCLCNVD-PSKAI-DRNGLYYCSEACADGH 39 (55)
T ss_dssp CSSTTCCCCBC-TTTSE-ESSSCEESSHHHHHTS
T ss_pred ecCCCCeeEec-hHHhh-hcCCeEEehHHHHccC
Confidence 35777777774 44544 4666999999997654
No 25
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=55.17 E-value=8.8 Score=25.08 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=21.0
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|..+ .|.-+..+.||...|-.
T Consensus 29 ~C~~C~~~L~~~--~~~~~~g~~yC~~~cy~ 57 (76)
T 1iml_A 29 KCEKCGKTLTSG--GHAEHEGKPYCNHPCYS 57 (76)
T ss_dssp BCTTTCCBCCTT--TEEEETTEEEETTTHHH
T ss_pred CccccCccCCCC--ceECcCCeEeeCHHHHH
Confidence 588999999654 36667789999645643
No 26
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=52.65 E-value=9 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.808 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|. + ..|.-+..+.||. +|-
T Consensus 48 ~C~~C~~~L~-~-~~f~~~~~~~yC~-~cy 74 (77)
T 2egq_A 48 HCKKCSVNLA-N-KRFVFHQEQVYCP-DCA 74 (77)
T ss_dssp BCSSSCCBCT-T-SCCCEETTEECCH-HHH
T ss_pred EehhcCCCCC-C-CccEeECCEEECh-HHh
Confidence 5888999996 3 3566777899995 553
No 27
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.27 E-value=7.2 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.594 Sum_probs=19.6
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ .|..+..+.|| ..|-
T Consensus 36 ~C~~C~~~L~~~--~~~~~~~~~yC-~~cy 62 (81)
T 1a7i_A 36 LCMVCRKNLDST--TVAIHDAEVYC-KSCY 62 (81)
T ss_dssp ECSSSCCEECSS--CCEEETTEEEC-SHHH
T ss_pred ccCCCCCCCCCC--CeEeeCCEEEC-HHHH
Confidence 588999999643 36667789999 4444
No 28
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.25 E-value=4.7 Score=25.58 Aligned_cols=27 Identities=15% Similarity=0.485 Sum_probs=20.1
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ .|.-+..+.||. +|-
T Consensus 41 ~C~~C~~~L~~~--~~~~~~g~~yC~-~~y 67 (72)
T 3f6q_B 41 VCAQCFQQFPEG--LFYEFEGRKYCE-HDF 67 (72)
T ss_dssp SCTTTCCCCGGG--CCEEETTEEECH-HHH
T ss_pred cccCCCCCCCCC--CeEeECCeEeCH-HHH
Confidence 488999999655 566777899994 443
No 29
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.52 E-value=12 Score=23.84 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=18.9
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ . |.-+..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~-~-~~~~~~~~yC~-~cy 61 (72)
T 1wyh_A 35 LCSGCEQPLGSR-S-FVPDKGAHYCV-PCY 61 (72)
T ss_dssp BCTTTCCBTTTS-C-EEEETTEEEEH-HHH
T ss_pred eECCCCCcCCCC-c-cCCcCCeEECH-HHH
Confidence 588899999643 4 55566789984 443
No 30
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.67 E-value=8.4 Score=25.49 Aligned_cols=31 Identities=26% Similarity=0.820 Sum_probs=21.5
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
..| .|..|++.|.. .+.|..+|...||. .|-
T Consensus 40 ~CF--~C~~C~~~L~~-~~~~~~~~~~~~C~-~C~ 70 (81)
T 1v6g_A 40 DCF--VCAVCRLPFPP-GDRVTFNGKECMCQ-KCS 70 (81)
T ss_dssp TTS--SCSSSCCCCCS-SSCEEEETTEEEEH-HHH
T ss_pred cCC--ccccCCCCCCC-CCEEEeCCCCEECh-hhh
Confidence 355 58899999964 45677777667884 453
No 31
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.19 E-value=5.5 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|. + ..|+.+..+.||. .|-.
T Consensus 43 ~C~~C~~~L~-~-~~~~~~~g~~yC~-~cy~ 70 (79)
T 1x62_A 43 VCTDCGTNLK-Q-KGHFFVEDQIYCE-KHAR 70 (79)
T ss_dssp SCSSSCCCHH-H-HCCEESSSCEECH-HHHH
T ss_pred eeCCCCCCCC-C-CCeEeECCEEECH-HHHH
Confidence 4888999994 2 3477778899994 4543
No 32
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.79 E-value=9.6 Score=24.55 Aligned_cols=27 Identities=30% Similarity=0.791 Sum_probs=20.2
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|. + ..|.-+..+.||. +|-
T Consensus 37 ~C~~C~~~L~-~-~~f~~~~g~~yC~-~c~ 63 (72)
T 1x4l_A 37 NCKKCSLSLV-G-RGFLTERDDILCP-DCG 63 (72)
T ss_dssp BCSSSCCBCT-T-SCCEECSSSEECH-HHH
T ss_pred EeccCCCcCC-C-CccEeECCEEECh-hHc
Confidence 5889999995 3 4566688899995 443
No 33
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.60 E-value=11 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=18.2
Q ss_pred ccccccCCCCCCCceeEE-cCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMY-RGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMY-RGe~AFCS~ 121 (182)
.|..|++.|.. ...|.| +..+.||..
T Consensus 44 ~C~~C~~~L~~-~~~~~~~~~g~~yC~~ 70 (82)
T 2co8_A 44 RCHTCEATLWP-GGYEQHPGDGHFYCLQ 70 (82)
T ss_dssp BCSSSCCBCCT-TSEECCTTTCCCEETT
T ss_pred EEcCCCCCcCC-CceeEeCcCCEEEChH
Confidence 58889999953 344445 677899964
No 34
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.30 E-value=9.2 Score=27.54 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=24.0
Q ss_pred chhHhhccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 89 TPHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 89 ~~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
...| .|..|++.|.+....|..+..+.||. .|-
T Consensus 30 ~~CF--~C~~C~~~L~~~~~~~~~~~g~~yC~-~cy 62 (122)
T 1m3v_A 30 SRCL--KCSSCQAQLGDIGTSSYTKSGMILCR-NDY 62 (122)
T ss_dssp HHHH--CCSSSCCCTTTSEECCEEETTEEECH-HHH
T ss_pred hhCC--CcCCCCCcccccCCeEEEECCeeecH-HHH
Confidence 4466 68999999964335687888899985 443
No 35
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.99 E-value=12 Score=24.66 Aligned_cols=27 Identities=30% Similarity=0.881 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+ .|.-+..+.||. .|-
T Consensus 45 ~C~~C~~~L~~~--~~~~~~~~~yC~-~cy 71 (82)
T 1x63_A 45 TCSNCKQVIGTG--SFFPKGEDFYCV-TCH 71 (82)
T ss_dssp CCSSSCCCCTTS--CEEEETTEEEEH-HHH
T ss_pred chhhCCCccCCC--ccEeeCCEEECH-HHH
Confidence 588999999644 466677889995 554
No 36
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.50 E-value=11 Score=25.44 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=19.8
Q ss_pred ccccccCCCCCCCceeEEcCCccccChh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLE 122 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~E 122 (182)
.|..|++.|. + .|..+..+.||...
T Consensus 44 ~C~~C~~~L~-~--~~~~~~g~~yC~~~ 68 (80)
T 2dj7_A 44 KCQTCSVILT-G--EYISKDGVPYCESD 68 (80)
T ss_dssp BCSSSCCBCS-S--CCEEETTEEECTTH
T ss_pred CcCcCCCCcC-C--CeEEECCEEECHHH
Confidence 6889999996 3 47778889999653
No 37
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.42 E-value=13 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.675 Sum_probs=18.7
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|..+ .|..+..+.||.
T Consensus 43 ~C~~C~~~L~~~--~~~~~~~~~yC~ 66 (80)
T 1x3h_A 43 VCGDCFTSFSTG--SFFELDGRPFCE 66 (80)
T ss_dssp BCSSSCCBSCSS--CCEESSSCEECH
T ss_pred ChhhCCCCCCCC--cEEeECCEEECH
Confidence 488999999644 366778899995
No 38
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.36 E-value=12 Score=23.73 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=21.3
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
..| .|..|++.|. + +.|..+..+.||. .|-
T Consensus 30 ~CF--~C~~C~~~L~-~-~~~~~~~g~~yC~-~~y 59 (66)
T 1nyp_A 30 EHF--VCAKCEKPFL-G-HRHYERKGLAYCE-THY 59 (66)
T ss_dssp TTC--BCTTTCCBCS-S-SCCEEETTEEECH-HHH
T ss_pred CcC--EECCCCCCCC-C-CceEeECCcEECH-HHH
Confidence 355 5889999995 3 4566777889994 443
No 39
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.32 E-value=12 Score=24.40 Aligned_cols=24 Identities=33% Similarity=0.866 Sum_probs=18.5
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|. + ..|.-+..+.||.
T Consensus 37 ~C~~C~~~L~-~-~~f~~~~g~~yC~ 60 (76)
T 1x68_A 37 NCGKCSVSLV-G-KGFLTQNKEIFCQ 60 (76)
T ss_dssp BCTTTCCBCS-S-SCEEEETTEEEET
T ss_pred ChhhCCCcCC-C-CceEeECCEEECH
Confidence 6888999996 3 4466677899996
No 40
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.18 E-value=13 Score=26.53 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|+++|......|..+..+.||..
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~ 57 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRR 57 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHH
T ss_pred ccCcCCCccccCCCeEEEECCEEeecC
Confidence 588899999643356777888999953
No 41
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=43.07 E-value=9.8 Score=32.09 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=24.8
Q ss_pred CchhHhhccc--cccCCCCCCCcee-------------EEcCCccccChhHHHHHHHHH
Q 030117 88 ETPHFLRTCG--LCKRRLVPGRDIY-------------MYRGDSAFCSLECRQQQMNQD 131 (182)
Q Consensus 88 e~~~FL~~C~--lCkK~L~~gkDIY-------------MYRGe~AFCS~ECR~qqI~~D 131 (182)
+.-+....|. +|.|.+..-++-| .|-.-+-|||.+|-..-+...
T Consensus 65 eERnI~k~CGYPLC~~~~~~~~~ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~~ 123 (219)
T 4fc8_A 65 QERNLVKRCGYPLCSKSQARVRDPFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFYQ 123 (219)
T ss_dssp HHHHTTTCCSSTTCCSCCSCC-------------------CGGGTCSSHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCCcccccCCCceeeeccccccccCcHHHHHhhhhHHHHHHHHHHH
Confidence 3444556664 5777765333333 354568999999977665553
No 42
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.49 E-value=15 Score=24.89 Aligned_cols=28 Identities=18% Similarity=0.543 Sum_probs=20.6
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|.. ..|.-+..+.||. .|-.
T Consensus 53 ~C~~C~~~L~~--~~f~~~~g~~yC~-~cy~ 80 (90)
T 2dar_A 53 NCAHCKNTMAY--IGFVEEKGALYCE-LCYE 80 (90)
T ss_dssp BCSSSCCBCSS--SCBEESSSCEECH-HHHH
T ss_pred ccCCCCCCCCC--CEeEeECCEEECH-HHHH
Confidence 68889999963 3477787899995 4543
No 43
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=41.65 E-value=14 Score=23.04 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=20.1
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccChhHHHHHHH
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMN 129 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~ 129 (182)
.+...|..|.+.. .-..---....|||.+|..+...
T Consensus 7 ~~~~~C~~C~~~~---~~~C~~C~~~~YCs~~CQ~~~W~ 42 (52)
T 2jw6_A 7 RKEQSCVNCGREA---MSECTGCHKVNYCSTFCQRKDWK 42 (52)
T ss_dssp ----CCSSSSSSC---SEECTTTCSSEESSHHHHHHHTT
T ss_pred ccCCcCCCCCCCC---cCcCCCCCCEeecCHHHHHHHHH
Confidence 4567888888742 11111123567999999886654
No 44
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.63 E-value=8.5 Score=24.97 Aligned_cols=24 Identities=17% Similarity=0.534 Sum_probs=17.7
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|..+ + |..+..+.||.
T Consensus 41 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 64 (77)
T 1g47_A 41 VCAQCFQQFPEG-L-FYEFEGRKYCE 64 (77)
T ss_dssp CCTTTCCCCGGG-C-SEEETTEEECH
T ss_pred eECCCCCCCCCC-C-eEeECCeEeCH
Confidence 588899999654 4 55666789983
No 45
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.59 E-value=13 Score=28.12 Aligned_cols=34 Identities=26% Similarity=0.674 Sum_probs=23.4
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhHHHH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQ 126 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~q 126 (182)
..| .|..|++.|..|...|+-...+.||. .|-.+
T Consensus 92 ~CF--~C~~C~~~L~~g~~f~~~~~g~~~C~-~c~~~ 125 (169)
T 2rgt_A 92 HCF--ACVVCKRQLATGDEFYLMEDSRLVCK-ADYET 125 (169)
T ss_dssp GGC--BCTTTCCBCCTTCEEEECTTSCEEEH-HHHHH
T ss_pred CCC--cCCCCCCCCCCCCceEEccCCeEECH-HHHHH
Confidence 355 68899999976666566556689985 45443
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.49 E-value=8.7 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=18.4
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|++.|.+....|..+..+.||..
T Consensus 90 ~C~~C~~~L~~~g~~f~~~dg~~yC~~ 116 (123)
T 2l4z_A 90 KCSSCQAQLGDIGTSSYTKSGMILCRN 116 (123)
T ss_dssp BCTTTCCBGGGTTCCCBCSSSCCBCHH
T ss_pred CcCcCCCcccccCCceEEECCEEeCHH
Confidence 577889999632234666777889864
No 47
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.34 E-value=14 Score=26.18 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|++.|......|..+..+.||..
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~ 58 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRR 58 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHH
T ss_pred cccccCCchhcCCCeeEEECCeeechH
Confidence 588899999642246777888999954
No 48
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.54 E-value=15 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.8
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|..+ + |.-+..+.||.
T Consensus 44 ~C~~C~~~L~~~-~-~~~~~g~~yC~ 67 (91)
T 2d8y_A 44 RCSYCNNKLSLG-T-YASLHGRIYCK 67 (91)
T ss_dssp BCTTTCCBCCTT-T-CCCSSSCCCCH
T ss_pred eeCCCCCCCCCC-C-cEeECCEEECH
Confidence 588899999654 4 65667789984
No 49
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.84 E-value=18 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.672 Sum_probs=18.7
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|. + ..|.-++.+.||.
T Consensus 45 ~C~~C~~~L~-~-~~f~~~~~~~~C~ 68 (82)
T 2ehe_A 45 RCCRCQRSLA-D-EPFTCQDSELLCN 68 (82)
T ss_dssp BCTTTCCBCS-S-CCEEEETTEEEET
T ss_pred eecCCCCccC-C-CccEeeCCEEECH
Confidence 5889999996 3 3576777899995
No 50
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.27 E-value=21 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=22.3
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccCh
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.+-..|..|+|+|.- -.|--|-..-||+.
T Consensus 13 ~~~~rC~~C~kkvgl--~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGV--MGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTT--SCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccc--cCeEeecCCEeccc
Confidence 455789999999852 24777888999984
No 51
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=33.35 E-value=32 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.401 Sum_probs=22.3
Q ss_pred HhhccccccCCCCCCCceeEEcCCccccChhHHHHHHH
Q 030117 92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMN 129 (182)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~ 129 (182)
....|..|.+. ..-..---....|||.+|......
T Consensus 16 ~~~~C~~C~~~---~~~~Cs~C~~~~YCs~~CQ~~~W~ 50 (64)
T 2odd_A 16 SSESCWNCGRK---ASETCSGCNTARYCGSFCQHKDWE 50 (64)
T ss_dssp CSSSCTTTSSC---CCEEETTTSCCEESSHHHHHHHHH
T ss_pred CCCcCccccCC---CcccCCCCCChhhCCHHHHHHHHH
Confidence 45678888873 222222223567999999887665
No 52
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.48 E-value=26 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=22.3
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccCh
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.+-..|..|+|+|.- -.|--|-..-||+.
T Consensus 13 ~~~~rC~~C~kkvgl--~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGL--TGFMCRCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCT--TCEECSSSCEECTT
T ss_pred CcCCcChhhCCccCc--cCEEeecCCEeccc
Confidence 344689999999852 24777889999985
No 53
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.29 E-value=30 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.541 Sum_probs=19.9
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECRQ 125 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~ 125 (182)
.|..|++.|..+ .|.-+..+.|| ..|-.
T Consensus 144 ~C~~C~~~L~~~--~~~~~~g~~yC-~~cy~ 171 (192)
T 1b8t_A 144 RCAKCGKSLEST--TLADKDGEIYC-KGCYA 171 (192)
T ss_dssp BCTTTCCBCCSS--SEEEETTEEEE-HHHHH
T ss_pred CccccCCCCCCC--cccccCCEEeC-HHHHH
Confidence 578899999643 36677789999 55543
No 54
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.89 E-value=26 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=20.1
Q ss_pred hhHhhccccccCCCCCCCceeEEcCCccccChhH
Q 030117 90 PHFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLEC 123 (182)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~EC 123 (182)
.+| .|..|++.|..+ .| .+..+.||. .|
T Consensus 40 ~CF--~C~~C~~~L~~~--~f-~~~g~~yC~-~c 67 (79)
T 2cor_A 40 DHF--NCANCGKELTAD--AR-ELKGELYCL-PC 67 (79)
T ss_dssp TTS--BCSSSCCBCCTT--CE-EETTEEECH-HH
T ss_pred CCC--EeCCCCCccCCC--CE-eECCEEeCH-HH
Confidence 455 699999999744 36 556789984 44
No 55
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.37 E-value=20 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=21.5
Q ss_pred hHhhccccccCCCCCCC-ceeEEcCCccccCh
Q 030117 91 HFLRTCGLCKRRLVPGR-DIYMYRGDSAFCSL 121 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gk-DIYMYRGe~AFCS~ 121 (182)
.+-..|..|+|++.--. ..|--|-..-||+.
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 44568999999995110 01666888999984
No 56
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=28.68 E-value=27 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.675 Sum_probs=17.7
Q ss_pred ccccccCCCCCCCceeEEcCCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS 120 (182)
.|..|++.|. + +.|..+..+.||.
T Consensus 35 ~C~~C~~~L~-~-~~~~~~~g~~yC~ 58 (101)
T 2cup_A 35 RCAKCLHPLA-N-ETFVAKDNKILCN 58 (101)
T ss_dssp CCSSSCCCTT-S-SCCEEETTEEECH
T ss_pred cccccCCCCC-c-CeeECcCCEEECh
Confidence 4788999994 3 4566677789994
No 57
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.34 E-value=34 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.2
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccCh
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.+-..|..|+|+|.-- .|--|-..-||+.
T Consensus 23 ~~~~RC~~C~kkvgL~--~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT--GFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTT--CEECTTSCEECTT
T ss_pred ccCccchhhcCccccc--ceEeccCCEeccc
Confidence 3446899999998532 4777888999984
No 58
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.28 E-value=30 Score=26.58 Aligned_cols=28 Identities=46% Similarity=0.971 Sum_probs=19.4
Q ss_pred ccccccCCCCCCCceeEEcCCccccChhHH
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSLECR 124 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR 124 (182)
.|..|++.|..+.. |.-+..+.|| ..|-
T Consensus 99 ~C~~C~~~L~~g~~-f~~~~g~~yC-~~c~ 126 (188)
T 1rut_X 99 TCSTCRNRLVPGDR-FHYINGSLFC-EHDR 126 (188)
T ss_dssp BCTTTCCBCCTTCE-EEEETTEEEE-GGGC
T ss_pred eECCCCCCCCCCCe-EEEECCeEEC-HHHH
Confidence 57889999966654 5455667999 4454
No 59
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.58 E-value=28 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=21.3
Q ss_pred HhhccccccCCCCCCCceeEEcCCccccCh
Q 030117 92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
+-..|+.|+|+|+ ---|--|-..-||+.
T Consensus 24 ~~nRC~~CrKkvg--L~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVG--LTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCG--GGCEECTTSCEECSS
T ss_pred cCCcChhhCCccc--ccCeecCCCCEechh
Confidence 4568999999984 224777888999984
No 60
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.96 E-value=37 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.672 Sum_probs=19.1
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|++.|..+.. |+-+..+.||..
T Consensus 96 ~C~~C~~~L~~g~~-f~~~~~~~~C~~ 121 (131)
T 2xjy_A 96 KCAACQKHFCVGDR-YLLINSDIVCEQ 121 (131)
T ss_dssp BCTTTCCBCCTTCE-EEEETTEEEEGG
T ss_pred ccCCCCCCCCCCCE-EEEECCEEEcHH
Confidence 58889999965655 555567899964
No 61
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.92 E-value=35 Score=22.39 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=17.4
Q ss_pred ccccccCCCCCCCceeEEc-CCccccC
Q 030117 95 TCGLCKRRLVPGRDIYMYR-GDSAFCS 120 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR-Ge~AFCS 120 (182)
.|..|++.|. + +.|... ..+.||.
T Consensus 43 ~C~~C~~~L~-~-~~f~~~~~g~~yC~ 67 (81)
T 2dlo_A 43 TCVVCHRGLD-G-IPFTVDATSQIHCI 67 (81)
T ss_dssp BCSSSCCBCT-T-SCEECCTTCCCEEH
T ss_pred CcccCCCccC-C-CeeEECCCCEEECH
Confidence 5889999996 3 456655 4589984
No 62
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=25.21 E-value=45 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.448 Sum_probs=23.7
Q ss_pred hhccccccCCCCCCCceeEEcCCccccChhHHHHHHHHHHHHhhhc
Q 030117 93 LRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKQKCT 138 (182)
Q Consensus 93 L~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~~DE~~Ek~~ 138 (182)
...|..|.+.- .-..---....|||.||....... .+..|.
T Consensus 15 ~~~C~~C~~~~---~~~Cs~Ck~v~YCs~eCQ~~~W~~--HK~~C~ 55 (70)
T 2d8q_A 15 RPRCAYCSAEA---SKRCSRCQNEWYCCRECQVKHWEK--HGKTCV 55 (70)
T ss_dssp CCBCSSSCCBC---CCBCTTTSCCBCSCHHHHHHTHHH--HHHHCC
T ss_pred CCcCCCCCCcc---cccCCCCCCEeeCCHHHhHHHHHH--HHHHHH
Confidence 45788887741 111111234679999998776654 444444
No 63
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=24.15 E-value=15 Score=26.49 Aligned_cols=10 Identities=70% Similarity=1.185 Sum_probs=5.4
Q ss_pred CCCCCCCCCC
Q 030117 4 GKRPRPPMKR 13 (182)
Q Consensus 4 GKRpRppMkR 13 (182)
||||||-|-.
T Consensus 1 gkrprpvmcq 10 (81)
T 4gvb_B 1 GKRPRPVMCQ 10 (81)
T ss_dssp ---CCCEEEE
T ss_pred CCCCCceEEE
Confidence 7999988754
No 64
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.11 E-value=59 Score=22.64 Aligned_cols=34 Identities=35% Similarity=0.763 Sum_probs=23.8
Q ss_pred cccccCCCCCCCceeEE-cCCccccChhHHHHHHHHHHHH
Q 030117 96 CGLCKRRLVPGRDIYMY-RGDSAFCSLECRQQQMNQDERK 134 (182)
Q Consensus 96 C~lCkK~L~~gkDIYMY-RGe~AFCS~ECR~qqI~~DE~~ 134 (182)
|-.|.|-= . ||- ..|.--||.||....+..-...
T Consensus 22 CvvCGryG---e--YICd~Td~DVCSlECK~~~l~~~~~~ 56 (60)
T 2yqp_A 22 CVVCGRYG---E--YICDKTDEDVCSLECKAKHLLQVKEK 56 (60)
T ss_dssp CSSSSSCC---S--EECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred EEEecCcc---c--eeecCCCcchhhHHHHHHHHHHHHhh
Confidence 88887632 2 554 4788899999999988544433
No 65
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=22.55 E-value=38 Score=21.89 Aligned_cols=33 Identities=15% Similarity=0.458 Sum_probs=18.7
Q ss_pred hccccccCCCCCCCceeEEcCCccccChhHHHHHHH
Q 030117 94 RTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQMN 129 (182)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI~ 129 (182)
..|..|.+.- .-..---....|||.+|..+...
T Consensus 16 ~~C~~C~~~~---~~~Cs~C~~v~YCs~~CQ~~~W~ 48 (60)
T 2dj8_A 16 ESCWNCGRKA---SETCSGCNTARYCGSFCQHKDWE 48 (60)
T ss_dssp CCCSSSCSCC---CEECTTTSCCEESSHHHHHHTHH
T ss_pred cccccCCCCC---cccCCCCCCEeeeCHHHHHHHHH
Confidence 3566776621 11111123457999999877655
No 66
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=22.16 E-value=52 Score=30.40 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=29.9
Q ss_pred hhccccccCCCCCC---------CceeEEcCC-ccccChhHHHHHHHHHHH
Q 030117 93 LRTCGLCKRRLVPG---------RDIYMYRGD-SAFCSLECRQQQMNQDER 133 (182)
Q Consensus 93 L~~C~lCkK~L~~g---------kDIYMYRGe-~AFCS~ECR~qqI~~DE~ 133 (182)
-..|..|.=++... -.+-.|.|. -.|||..|+...-..-|+
T Consensus 396 p~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~~~Pe~ 446 (511)
T 3u52_A 396 PQLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFKHEPEK 446 (511)
T ss_dssp BCBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHHHCHHH
T ss_pred CCccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHHHCHHH
Confidence 46899999998542 235778998 589999999875544333
No 67
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.54 E-value=49 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=18.2
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|++.|... .| .+..+.||..
T Consensus 35 ~C~~C~~~L~~~--~f-~~~g~~yC~~ 58 (169)
T 2rgt_A 35 KCSDCHVPLAER--CF-SRGESVYCKD 58 (169)
T ss_dssp BCTTTCCBCCSC--CE-ESSSCEECHH
T ss_pred ccCCCCCcCCCC--Cc-ccCCeeeecc
Confidence 688999999643 26 5778999954
No 68
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.37 E-value=43 Score=25.46 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=17.8
Q ss_pred ccccccCCCCCCCceeEEcCCccccCh
Q 030117 95 TCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.|..|++.|... .| .+..+.||..
T Consensus 89 ~C~~C~~~L~~~--~f-~~~g~~yC~~ 112 (182)
T 2jtn_A 89 KCSDCHVPLAER--CF-SRGESVYCKD 112 (182)
T ss_dssp SCTTTCCCCSSC--CE-EETTEEECHH
T ss_pred ccCCCCCccCCC--ce-eECCEeeecC
Confidence 688899999643 36 5778999954
No 69
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=20.78 E-value=41 Score=29.38 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=22.9
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccChhHHHHHH
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQM 128 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI 128 (182)
.....|..|.++.. .--.+--.....|||.+|.....
T Consensus 47 ~~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w 83 (433)
T 3qww_A 47 ERGHHCECCFARKE-GLSKCGRCKQAFYCDVECQKEDW 83 (433)
T ss_dssp GTTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHHH
T ss_pred ccCCcCCcccccCC-CCCCCCCCcceeecChhhhhhhh
Confidence 45678999988752 21112112456899999986653
No 70
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.74 E-value=51 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.536 Sum_probs=22.9
Q ss_pred hHhhccccccCCCCCCCceeEEcCCccccCh
Q 030117 91 HFLRTCGLCKRRLVPGRDIYMYRGDSAFCSL 121 (182)
Q Consensus 91 ~FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ 121 (182)
.+-..|..|+|+|.-- --|--|-..-||+.
T Consensus 23 ~~~~rC~~C~kkvgl~-~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA-TSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSS-SCEECTTCCEECTT
T ss_pred ccCccchhhCCeeccc-CCeEcCCCCEeccc
Confidence 4557899999999631 24777888999984
No 71
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.08 E-value=44 Score=28.91 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=21.9
Q ss_pred HhhccccccCCCCCCCceeEEcCCccccChhHHHHHH
Q 030117 92 FLRTCGLCKRRLVPGRDIYMYRGDSAFCSLECRQQQM 128 (182)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYRGe~AFCS~ECR~qqI 128 (182)
....|..|.++.. .--.+---.-..|||.+|.....
T Consensus 46 ~~~~C~~C~~~~~-~~~~C~~C~~~~yCs~~Cq~~~w 81 (429)
T 3qwp_A 46 RGVVCDRCLLGKE-KLMRCSQCRVAKYCSAKCQKKAW 81 (429)
T ss_dssp BTTBCTTTCCBCS-SCEECTTTSCCEESSHHHHHHTH
T ss_pred CCCcCcCCCCcCC-CCCcCCCCCCcccCChhhhhhhh
Confidence 4567888887642 22222223445799999976543
Done!