BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030119
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 14 IKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIF 73
+K+ I+ + ++PKPGI+F+D+T+LL PK + +ID+ VERYK I+ V G EARGF+F
Sbjct: 18 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLF 77
Query: 74 GPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIA 133
G P+AL +G FVP+RKP KLP + ISE Y LEYG D LE+HV A++ ++ LVVDDL+A
Sbjct: 78 GAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLA 137
Query: 134 TGGTLCAAINLLERVGAEVVECACVIELPDLKGRERL--NGKPLYVLV 179
TGGT+ A + L+ R+G EV + A +I L DL G +RL G Y LV
Sbjct: 138 TGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLV 185
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
Query: 8 DARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYK---GKNISVVA 64
D+ + ++ +IR P+FP PG++F+DI+ +L P F+ I + K G I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 65 GIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAER 124
G+++RGF+FGP +A +G V +RK KLPG + Y LEYG+ LE+ A+E +R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 125 ALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180
+VVDDL+ATGGT+ AA LL R+ AEV+EC ++EL LKGRE+L P + L++
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQ 178
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Query: 14 IKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFV----ERYKGKNISVVAGIEAR 69
+K + PNFP GI+F+D + P F+ ID F E + I + G+E+R
Sbjct: 10 LKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESR 69
Query: 70 GFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVD 129
GF+FGP +ALA+G FVP+RK KLPG+ Y EYG D E+ A+ + ++VD
Sbjct: 70 GFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVD 129
Query: 130 DLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVESH 182
D+IATGG+ AA L+E++ A ++E V+EL LKGR +LN P++ L+ +
Sbjct: 130 DIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNA-PVFTLLNAQ 181
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 18 IRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPI 77
I+ +P+FP GI F+D++ +L P YK I+ V GIE+RGFI G +
Sbjct: 12 IKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIV 71
Query: 78 ALAIGAKFVPLRKPKKLPGKVISEEYILEYGRD-CLEMHVGAVESAERALVVDDLIATGG 136
A ++G FV LRK KLPG V + +EY + +E+ + + L+ DD++ATGG
Sbjct: 72 ANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGG 131
Query: 137 TLCAAINLLERVGA--EVVECACVIELPDLKGRERLNGK 173
TL AAI L E G E + + E+ LKGRE++ K
Sbjct: 132 TLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQK 170
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Query: 31 FQDITTLLLKPKEFKDTIDMFVERYKGKNI--SVVAGIEARGFIFGPPIALAIGAKFVPL 88
F D++++ P+ K D VERY+ + + + G +ARGF+FGP IA+ +G FV +
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 89 RKPKKLPGKVI-SEEYILEYGR---DCLEMHVGAVESAERALVVDDLIATGGTLCAAINL 144
RK K G +I SE Y EY + + + G++ R +++DD++ATGGT + + L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 145 LERVGAEVVECACVIELPDLKGRERLNG 172
+E GAEVVE ++ +P LK ER++
Sbjct: 162 VEASGAEVVEMVSILTIPFLKAAERIHS 189
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 31 FQDITTLLLKPKEFKDTIDMFVERYKGKNI--SVVAGIEARGFIFGPPIALAIGAKFVPL 88
F D++++ P+ K D V+RY+ + + + G +ARGF+FGP IA+ + FV +
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 89 RKPKKLPGKVI-SEEYILEYGR---DCLEMHVGAVESAERALVVDDLIATGGTLCAAINL 144
RK K G +I SE Y EY + + + G++ R +++DD++ATGGT + + L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 145 LERVGAEVVECACVIELPDLKGRERLNG 172
+E A VVE ++ +P LK E+++
Sbjct: 161 VEASDAVVVEMVSILSIPFLKAAEKIHS 188
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 34 ITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK 93
+T +L KP +F + + I VV + +G A + V +RK K
Sbjct: 105 LTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNK 164
Query: 94 LP-GKVISEEYILEYGRDCLEMHVG--AVESAERALVVDDLIATGGTLCAAINLLERVGA 150
+ G +S Y+ M + ++++ L++DD + GGT+ INLL+ A
Sbjct: 165 VTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNA 224
Query: 151 EVVECACVIE 160
V ++E
Sbjct: 225 NVAGIGVLVE 234
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 34 ITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK 93
+T +L KP +F + + I VV + +G A + V +RK K
Sbjct: 105 LTDILGKPSVLSKVGKLFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNK 164
Query: 94 LP-GKVISEEYILEYGRDCLEMHVG--AVESAERALVVDDLIATGGTLCAAINLLERVGA 150
+ G +S Y+ M + ++++ L++DD + GGT+ INLL+ A
Sbjct: 165 VTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNA 224
Query: 151 EVVECACVIE 160
V ++E
Sbjct: 225 NVAGIGVLVE 234
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 93 KLPGKVISEEY-ILEYGR-DCLEMHVG--AVESAER-ALVVDDLIATGGTLCAAINLLER 147
K K+++ EY LE R E+ + +++ +R +VDD+I+TGGT+ A+ LL+
Sbjct: 171 KTASKILNAEYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKE 230
Query: 148 VGAEVVECACV 158
GA+ + ACV
Sbjct: 231 QGAKKIIAACV 241
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 32 QDITTLLLKPKEFKD--TIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89
D TL +F D D V YK ++ V + G I+ +G K +
Sbjct: 126 HDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 185
Query: 90 KPKKLPGKVISEEYILEYGRDCLEMHVGAVE-SAERALVVDDLIATGGTLCAAINLLERV 148
K K++ + + EM V V+ + ++ L+VDD+I+TGGT+ + LL
Sbjct: 186 K-KRIDDRTV-------------EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 231
Query: 149 GAEVVECACV 158
GA + + V
Sbjct: 232 GASKIYVSAV 241
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 32 QDITTLLLKPKEFKD--TIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89
D TL +F D D V YK ++ V + G I+ +G K +
Sbjct: 124 HDEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDGGLARVADISAKLGKKHFFIE 183
Query: 90 KPKKLPGKVISEEYILEYGRDCLEMHVGAVE-SAERALVVDDLIATGGTLCAAINLLERV 148
K K++ + + EM V V+ + ++ L+VDD+I+TGGT+ + LL
Sbjct: 184 K-KRIDDRTV-------------EMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 229
Query: 149 GAEVVECACV 158
GA + + V
Sbjct: 230 GASKIYVSAV 239
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 28/38 (73%)
Query: 126 LVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163
++VD ++ATGG+ AAI+ L++ GA+ ++ C+I P+
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE 165
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 125 ALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163
AL+VD ++ATGG++ A I+LL++ G ++ ++ P+
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 164
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERL 170
G E ++ +VV+DLI+TGG+ + L G EV+ + G+E+L
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKL 185
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI--ELP 162
G V ++ ++++DLI+TGG++ A+ +R GA+V+ + ELP
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELP 191
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 76 PIALAIGAKF-VPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIAT 134
PIA AI + VPL P++ K+ + +E G + +R +++DDL++T
Sbjct: 329 PIASAISNEMNVPLIYPRR-EAKIYGTKAAIE----------GEYKKGDRVVIIDDLVST 377
Query: 135 GGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN 171
G T AI L G EVV +++ D+ + LN
Sbjct: 378 GETKVEAIEKLRSAGLEVVSIVVLVD-RDMGAKAFLN 413
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 49 DMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLP-------GKVISE 101
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 43 DEFASRFAKDGITKIVTIESSGIAPAVXTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 102
Query: 102 EYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIEL 161
E H+ + L++DD +A G ++++++ GA + VIE
Sbjct: 103 TKQTESQIAVSGTHLS---DQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEK 159
Query: 162 PDLKGRERL 170
GR+ L
Sbjct: 160 SFQPGRDEL 168
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 116 VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPL 175
VG +E + A+++DD+I T GT+ A N L GA+ V C + ER+N +
Sbjct: 212 VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTI 270
Query: 176 YVLV 179
LV
Sbjct: 271 KELV 274
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 49 DMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLP-------GKVISE 101
D F R+ I+ + IE+ G L +G V RK K L V S
Sbjct: 40 DEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 99
Query: 102 EYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIEL 161
E H+ + L++DD +A G ++++++ GA + VIE
Sbjct: 100 TKQTESQIAVSGTHLS---DQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEK 156
Query: 162 PDLKGRERL 170
GR+ L
Sbjct: 157 SFQPGRDEL 165
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 30 MFQDITTLLLKPKEFKDTIDM-FVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFV 86
++ D L PK +D I+ FVE K + V+AG G G IA + F
Sbjct: 37 IYTDNRVTLSYPKT-RDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIADKMTLPFA 95
Query: 87 PLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLE 146
+R K G + +E G V ++ ++++DLI+TGG++ A
Sbjct: 96 YIRSKPKDHG-----------AGNQIE---GRVLKGQKMVIIEDLISTGGSVLDAAAAAS 141
Query: 147 RVGAEVVECACVI--ELP 162
R GA+V+ + ELP
Sbjct: 142 REGADVLGVVAIFTYELP 159
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 124 RALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERL 170
RA ++D +ATGG+ A++LL+ GA V+ ++ P+ G ER+
Sbjct: 125 RAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPE--GLERI 169
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 123 ERALVVDDLIATGGTLCAAINLLERVGAEVVECACV 158
+R ++VDD+ TG TL I ++++GA+ ++ AC+
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACL 119
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 123 ERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160
++ LVV+D TG + A+ L GAEVV A V++
Sbjct: 115 KKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVD 152
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 116 VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVV 153
+G VE +++DD++ T GTLC A +L+ GA+ V
Sbjct: 211 IGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQV 247
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159
+ + L+V+D+I TG T+ ++L+ + ++V+ AC+
Sbjct: 134 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACLF 172
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 134 TGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLV 179
T + N+L++ +VEC + LP G RLN G +YV+V
Sbjct: 137 TSEDVAEMHNILKKYHQYIVECHGITLLPQFLGMYRLNVDGVEIYVIV 184
>pdb|1A4X|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A4X|B Chain B, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A3C|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Dimeric Form
Length = 181
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 51 FVERYKGKNISVVAGIEARGFIFGPPIA----------LAIGAKFVPLRKPKKLPGKVIS 100
+ER KG N ++ GI+ RG +A + +G + L + L K +
Sbjct: 24 MIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYR-DDLSKKTSN 82
Query: 101 EEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVG 149
+E +++ +++ + ++ ++VDD++ TG T+ A ++ L VG
Sbjct: 83 DEPLVKGADIPVDI------TDQKVILVDDVLYTGRTVRAGMDALVDVG 125
>pdb|1QK5|A Chain A, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
pdb|1QK5|B Chain B, Toxoplasma Gondii Hypoxanthine-Guanine
Phosphoribosyltransferase With Xmp, Pyrophosphate And
Two Mg2+ Ions
Length = 233
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 123 ERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160
+ L+V+D++ATG TL L+ VG + + A ++E
Sbjct: 143 KHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVE 180
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 23 NFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEA-RG-FIFGPP---- 76
+F + I F I L + +E ++ I++ + K I GI+ +G ++GPP
Sbjct: 172 SFEQGEITFDGIGGLTEQIRELREVIELPL---KNPEIFQRVGIKPPKGVLLYGPPGTGK 228
Query: 77 ------IALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDD 130
+A IGA F+ P I ++YI E R EM A E + +D+
Sbjct: 229 TLLAKAVAATIGANFI------FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 131 LIATGG 136
+ A GG
Sbjct: 283 VDAIGG 288
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 126 LVVDDLIATGGTLCAAINLLERVGAE 151
+++D + AT G++C AI +L R+G +
Sbjct: 160 MLLDPMCATAGSVCKAIEVLLRLGVK 185
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 126 LVVDDLIATGGTLCAAINLLERVGAE 151
+++D + AT G++C AI +L R+G +
Sbjct: 141 MLLDPMCATAGSVCKAIEVLLRLGVK 166
>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
pdb|1QSD|B Chain B, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor
Length = 106
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 5 KDKDARINGIKDQIRVVP-NFPKPGIMFQDIT----TLLLKPKEFKDTIDMFVERYKG 57
KD++A + +K+ V P + K + D TL K +EFK+ ++ F++ Y+G
Sbjct: 28 KDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKTYQG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,408,677
Number of Sequences: 62578
Number of extensions: 215560
Number of successful extensions: 615
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 35
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)