Query 030119
Match_columns 182
No_of_seqs 146 out of 1336
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02293 adenine phosphoribosy 100.0 7.9E-36 1.7E-40 229.8 20.5 180 3-182 6-185 (187)
2 KOG1712 Adenine phosphoribosyl 100.0 2.8E-36 6.1E-41 221.0 15.4 176 7-182 4-182 (183)
3 PRK02304 adenine phosphoribosy 100.0 4.1E-33 8.9E-38 213.1 19.6 172 11-182 3-174 (175)
4 TIGR01090 apt adenine phosphor 100.0 1.2E-31 2.5E-36 204.0 18.3 168 14-181 1-169 (169)
5 COG0503 Apt Adenine/guanine ph 100.0 1.1E-29 2.3E-34 194.6 18.8 174 8-181 2-177 (179)
6 PRK09219 xanthine phosphoribos 100.0 4.9E-29 1.1E-33 192.3 18.6 170 9-182 3-179 (189)
7 PRK12560 adenine phosphoribosy 100.0 1.3E-28 2.7E-33 190.0 19.0 167 11-182 3-177 (187)
8 TIGR01744 XPRTase xanthine pho 100.0 1.6E-28 3.4E-33 189.8 18.8 170 8-182 2-179 (191)
9 TIGR01743 purR_Bsub pur operon 100.0 9.1E-28 2E-32 193.2 18.8 166 8-182 83-251 (268)
10 PRK13810 orotate phosphoribosy 100.0 1.4E-27 3E-32 183.9 17.8 141 27-182 41-183 (187)
11 PRK09213 pur operon repressor; 100.0 2.4E-27 5.2E-32 191.2 19.2 166 8-182 85-253 (271)
12 PRK08558 adenine phosphoribosy 99.9 4.6E-26 1E-30 181.6 17.8 160 15-182 73-238 (238)
13 PRK13809 orotate phosphoribosy 99.9 9.3E-26 2E-30 176.1 17.1 141 28-181 36-178 (206)
14 PRK13812 orotate phosphoribosy 99.9 3.1E-25 6.6E-30 169.6 17.2 137 28-181 29-167 (176)
15 TIGR00336 pyrE orotate phospho 99.9 5.7E-25 1.2E-29 167.8 15.6 149 18-182 14-171 (173)
16 PRK13811 orotate phosphoribosy 99.9 9.8E-25 2.1E-29 166.0 16.0 135 28-181 28-164 (170)
17 PRK02277 orotate phosphoribosy 99.9 1.9E-24 4.1E-29 168.5 17.5 146 26-182 50-197 (200)
18 TIGR01367 pyrE_Therm orotate p 99.9 6.5E-24 1.4E-28 163.7 17.3 136 28-182 25-163 (187)
19 PRK05500 bifunctional orotidin 99.9 3.3E-24 7.2E-29 184.9 16.5 140 28-182 313-454 (477)
20 PRK00455 pyrE orotate phosphor 99.9 1E-23 2.2E-28 164.7 16.3 139 29-182 32-174 (202)
21 PRK07322 adenine phosphoribosy 99.9 1.2E-23 2.7E-28 161.1 16.2 153 14-167 8-165 (178)
22 COG0461 PyrE Orotate phosphori 99.9 2.5E-23 5.5E-28 160.6 16.6 161 7-182 3-173 (201)
23 PRK06031 phosphoribosyltransfe 99.9 8.1E-22 1.8E-26 156.5 14.7 164 11-181 39-218 (233)
24 COG0856 Orotate phosphoribosyl 99.9 1.2E-20 2.6E-25 140.6 12.3 140 29-181 53-197 (203)
25 PF00156 Pribosyltran: Phospho 99.8 1.3E-20 2.8E-25 135.7 10.0 122 36-159 2-125 (125)
26 PLN02238 hypoxanthine phosphor 99.7 2.3E-16 5E-21 121.9 13.7 119 35-163 8-138 (189)
27 PRK09162 hypoxanthine-guanine 99.7 2.2E-16 4.9E-21 121.3 13.2 118 37-163 15-138 (181)
28 PRK00934 ribose-phosphate pyro 99.7 2.2E-16 4.7E-21 129.3 12.9 109 59-180 154-262 (285)
29 PRK02269 ribose-phosphate pyro 99.7 5.4E-16 1.2E-20 128.7 14.1 112 59-181 165-276 (320)
30 PRK07199 phosphoribosylpyropho 99.7 4.7E-16 1E-20 128.1 13.6 110 59-181 160-270 (301)
31 TIGR01203 HGPRTase hypoxanthin 99.7 1E-15 2.2E-20 116.1 13.5 118 38-163 2-125 (166)
32 PRK09177 xanthine-guanine phos 99.7 5.6E-16 1.2E-20 116.3 11.3 112 37-163 8-120 (156)
33 TIGR00201 comF comF family pro 99.7 3.3E-16 7.2E-21 121.2 10.0 120 38-159 55-189 (190)
34 COG1040 ComFC Predicted amidop 99.7 2.8E-16 6E-21 124.5 9.1 123 37-160 87-222 (225)
35 PRK15423 hypoxanthine phosphor 99.7 2.4E-15 5.3E-20 115.1 13.1 118 36-163 6-133 (178)
36 PRK04923 ribose-phosphate pyro 99.7 2.4E-15 5.3E-20 124.6 14.0 110 59-181 166-276 (319)
37 PRK08525 amidophosphoribosyltr 99.7 1.8E-15 3.9E-20 130.7 13.0 135 42-179 259-397 (445)
38 PRK03092 ribose-phosphate pyro 99.6 3.2E-15 7E-20 123.3 13.4 123 47-181 137-260 (304)
39 PRK01259 ribose-phosphate pyro 99.6 3.7E-15 8.1E-20 123.2 13.5 109 59-180 158-266 (309)
40 COG0462 PrsA Phosphoribosylpyr 99.6 2.8E-15 6E-20 122.5 12.4 107 61-180 165-272 (314)
41 PRK00553 ribose-phosphate pyro 99.6 7.6E-15 1.6E-19 122.3 14.5 108 60-180 169-280 (332)
42 PRK05205 bifunctional pyrimidi 99.6 5.5E-15 1.2E-19 113.1 12.4 120 36-162 4-136 (176)
43 PRK02458 ribose-phosphate pyro 99.6 5.4E-15 1.2E-19 122.9 12.5 108 60-181 170-277 (323)
44 PRK07349 amidophosphoribosyltr 99.6 4.9E-15 1.1E-19 129.1 11.0 116 42-159 296-414 (500)
45 PTZ00271 hypoxanthine-guanine 99.6 2.8E-14 6.1E-19 111.7 14.0 119 35-163 24-159 (211)
46 COG0634 Hpt Hypoxanthine-guani 99.6 2.5E-14 5.4E-19 107.4 13.0 121 34-164 7-135 (178)
47 TIGR01251 ribP_PPkin ribose-ph 99.6 1.8E-14 3.9E-19 119.2 13.2 111 59-181 159-269 (308)
48 PRK05793 amidophosphoribosyltr 99.6 1.2E-14 2.7E-19 126.2 12.2 119 42-162 272-393 (469)
49 PTZ00149 hypoxanthine phosphor 99.6 1.9E-14 4.2E-19 114.6 11.9 119 34-163 53-191 (241)
50 PRK06781 amidophosphoribosyltr 99.6 6.6E-15 1.4E-19 127.7 9.6 117 42-160 267-386 (471)
51 PRK06827 phosphoribosylpyropho 99.6 5.1E-14 1.1E-18 119.0 14.2 103 59-171 207-312 (382)
52 PLN02440 amidophosphoribosyltr 99.6 1.4E-14 3E-19 126.2 11.0 114 42-159 259-377 (479)
53 PRK11595 DNA utilization prote 99.6 4.1E-14 8.8E-19 112.4 12.0 121 37-159 83-224 (227)
54 PRK09246 amidophosphoribosyltr 99.6 1.4E-14 3.1E-19 126.8 10.2 116 43-159 277-395 (501)
55 TIGR01134 purF amidophosphorib 99.6 1.4E-14 3.1E-19 125.1 9.8 114 42-158 257-374 (442)
56 PLN02369 ribose-phosphate pyro 99.6 9.5E-14 2.1E-18 114.5 13.7 107 61-180 153-260 (302)
57 PRK09123 amidophosphoribosyltr 99.6 3.8E-14 8.3E-19 123.2 11.4 112 42-157 279-395 (479)
58 PRK07272 amidophosphoribosyltr 99.5 2.7E-14 6E-19 124.1 9.8 114 42-158 269-386 (484)
59 PRK02812 ribose-phosphate pyro 99.5 1.1E-13 2.3E-18 115.3 12.8 109 59-180 179-288 (330)
60 PRK07631 amidophosphoribosyltr 99.5 2.4E-14 5.2E-19 124.2 8.8 115 42-159 267-385 (475)
61 PRK08341 amidophosphoribosyltr 99.5 5.1E-14 1.1E-18 121.3 10.8 114 42-159 255-371 (442)
62 PTZ00145 phosphoribosylpyropho 99.5 1.1E-13 2.4E-18 118.2 12.6 109 60-181 280-394 (439)
63 PRK06388 amidophosphoribosyltr 99.5 8.2E-14 1.8E-18 120.9 11.5 117 42-159 275-393 (474)
64 PRK07847 amidophosphoribosyltr 99.5 8.2E-14 1.8E-18 121.7 11.4 117 42-159 286-404 (510)
65 COG2236 Predicted phosphoribos 99.5 5E-14 1.1E-18 108.5 7.5 112 37-158 5-123 (192)
66 PLN02297 ribose-phosphate pyro 99.5 4.9E-13 1.1E-17 110.9 11.9 104 60-180 184-294 (326)
67 PF14572 Pribosyl_synth: Phosp 99.5 4.2E-13 9.1E-18 102.3 9.2 118 61-180 5-141 (184)
68 COG0034 PurF Glutamine phospho 99.4 2.6E-13 5.6E-18 115.0 8.4 117 42-159 267-385 (470)
69 COG2065 PyrR Pyrimidine operon 99.3 2.2E-11 4.8E-16 90.4 11.1 122 37-163 5-138 (179)
70 KOG1448 Ribose-phosphate pyrop 99.2 7.1E-11 1.5E-15 95.3 10.8 129 28-172 136-264 (316)
71 PRK00129 upp uracil phosphorib 99.1 5.9E-10 1.3E-14 87.5 11.1 98 61-171 72-171 (209)
72 COG1926 Predicted phosphoribos 99.1 2E-09 4.3E-14 83.2 12.3 126 42-171 9-171 (220)
73 KOG0572 Glutamine phosphoribos 99.1 2.9E-10 6.3E-15 94.5 7.8 115 43-159 276-393 (474)
74 KOG3367 Hypoxanthine-guanine p 99.1 9.8E-10 2.1E-14 82.2 9.7 123 30-163 28-166 (216)
75 TIGR01091 upp uracil phosphori 99.1 1.2E-09 2.7E-14 85.6 10.7 97 61-171 70-169 (207)
76 PF15609 PRTase_2: Phosphoribo 98.9 4.2E-08 9E-13 75.2 13.3 144 24-167 13-167 (191)
77 PLN02541 uracil phosphoribosyl 98.3 4.3E-06 9.4E-11 67.0 9.0 97 62-171 105-206 (244)
78 COG0035 Upp Uracil phosphoribo 97.9 6.1E-05 1.3E-09 58.7 8.0 96 62-171 73-172 (210)
79 PF14681 UPRTase: Uracil phosp 97.8 0.00013 2.7E-09 57.3 7.8 96 61-170 69-169 (207)
80 KOG1503 Phosphoribosylpyrophos 97.7 0.0011 2.5E-08 52.7 12.2 146 28-179 140-304 (354)
81 PF15610 PRTase_3: PRTase ComF 97.0 0.014 3E-07 47.3 11.0 113 37-153 28-169 (274)
82 KOG1377 Uridine 5'- monophosph 94.9 0.2 4.3E-06 40.2 8.1 126 27-162 61-192 (261)
83 KOG1017 Predicted uracil phosp 94.8 0.1 2.2E-06 40.7 5.9 63 117-180 185-248 (267)
84 PF13793 Pribosyltran_N: N-ter 85.6 10 0.00023 26.8 10.1 74 68-156 7-85 (116)
85 PRK02812 ribose-phosphate pyro 80.3 29 0.00064 29.2 10.4 82 62-158 22-108 (330)
86 PTZ00145 phosphoribosylpyropho 80.3 28 0.00062 30.5 10.5 82 62-158 120-206 (439)
87 PRK04923 ribose-phosphate pyro 76.4 44 0.00096 27.9 10.4 79 62-156 8-91 (319)
88 PRK00934 ribose-phosphate pyro 75.0 40 0.00087 27.6 9.6 73 69-156 7-83 (285)
89 PRK07199 phosphoribosylpyropho 74.5 48 0.001 27.4 10.5 74 68-156 9-86 (301)
90 PRK04195 replication factor C 74.5 44 0.00096 29.4 10.3 111 34-151 13-132 (482)
91 PRK01259 ribose-phosphate pyro 74.5 45 0.00097 27.7 9.8 74 68-156 7-85 (309)
92 PLN02369 ribose-phosphate pyro 74.3 35 0.00076 28.3 9.1 70 72-156 2-76 (302)
93 PF04392 ABC_sub_bind: ABC tra 73.4 33 0.00072 27.8 8.8 116 32-154 36-165 (294)
94 TIGR01251 ribP_PPkin ribose-ph 71.9 33 0.00071 28.5 8.4 73 69-156 8-86 (308)
95 PRK02269 ribose-phosphate pyro 71.5 59 0.0013 27.2 10.5 80 62-157 7-91 (320)
96 PRK00553 ribose-phosphate pyro 69.5 68 0.0015 27.0 10.3 77 67-158 15-96 (332)
97 PRK03092 ribose-phosphate pyro 67.8 55 0.0012 27.1 8.9 71 73-158 1-76 (304)
98 COG3535 Uncharacterized conser 67.3 77 0.0017 26.8 11.7 108 39-152 76-186 (357)
99 COG1537 PelA Predicted RNA-bin 65.1 16 0.00034 31.1 5.1 55 123-182 290-350 (352)
100 COG0462 PrsA Phosphoribosylpyr 64.2 52 0.0011 27.6 8.0 76 69-159 12-92 (314)
101 PRK02458 ribose-phosphate pyro 63.8 87 0.0019 26.2 10.4 76 67-157 15-95 (323)
102 PF11202 PRTase_1: Phosphoribo 62.9 15 0.00032 29.7 4.4 108 48-161 73-188 (257)
103 COG0794 GutQ Predicted sugar p 60.4 75 0.0016 24.9 7.8 72 62-155 43-119 (202)
104 PF11382 DUF3186: Protein of u 59.6 33 0.00072 28.5 6.2 45 117-162 79-123 (308)
105 PF01488 Shikimate_DH: Shikima 58.0 29 0.00064 24.8 5.0 40 117-164 8-47 (135)
106 COG0052 RpsB Ribosomal protein 54.9 54 0.0012 26.5 6.4 34 59-92 156-189 (252)
107 smart00450 RHOD Rhodanese Homo 53.5 33 0.00071 21.9 4.4 31 119-152 53-83 (100)
108 cd00158 RHOD Rhodanese Homolog 53.4 38 0.00082 21.3 4.6 31 120-153 48-78 (89)
109 PF07931 CPT: Chloramphenicol 53.0 18 0.00039 27.5 3.3 47 121-170 82-129 (174)
110 TIGR00111 pelota probable tran 52.9 28 0.00061 29.5 4.8 55 123-182 295-350 (351)
111 PRK04940 hypothetical protein; 52.5 89 0.0019 24.0 7.0 50 39-89 37-89 (180)
112 PHA02774 E1; Provisional 50.6 1.5E+02 0.0033 27.3 9.1 67 59-148 435-503 (613)
113 PF05728 UPF0227: Uncharacteri 50.4 62 0.0013 24.8 6.0 48 40-89 41-88 (187)
114 COG0371 GldA Glycerol dehydrog 49.8 40 0.00086 28.8 5.1 43 49-91 74-117 (360)
115 PRK12342 hypothetical protein; 48.4 40 0.00088 27.3 4.8 44 46-89 96-143 (254)
116 cd01529 4RHOD_Repeats Member o 47.9 41 0.0009 22.1 4.2 31 120-153 54-84 (96)
117 cd01715 ETF_alpha The electron 47.7 49 0.0011 24.5 5.0 42 46-87 70-112 (168)
118 cd01444 GlpE_ST GlpE sulfurtra 47.1 42 0.00091 21.8 4.1 32 119-153 53-84 (96)
119 PRK03359 putative electron tra 45.9 40 0.00086 27.3 4.4 43 46-88 99-145 (256)
120 cd01714 ETF_beta The electron 44.9 48 0.0011 25.6 4.7 41 47-87 96-140 (202)
121 PF12646 DUF3783: Domain of un 43.4 71 0.0015 19.5 4.4 35 124-160 2-36 (58)
122 PF07728 AAA_5: AAA domain (dy 43.0 79 0.0017 22.1 5.3 86 62-149 3-92 (139)
123 PRK01021 lpxB lipid-A-disaccha 42.5 65 0.0014 29.6 5.6 42 47-88 298-342 (608)
124 cd08171 GlyDH-like2 Glycerol d 41.5 80 0.0017 26.4 5.8 43 48-90 67-110 (345)
125 PRK06827 phosphoribosylpyropho 40.6 2.4E+02 0.0052 24.3 10.5 40 117-158 73-130 (382)
126 TIGR00150 HI0065_YjeE ATPase, 40.3 94 0.002 22.5 5.3 46 39-84 3-49 (133)
127 cd01985 ETF The electron trans 39.8 62 0.0013 24.2 4.5 41 47-87 79-120 (181)
128 KOG0741 AAA+-type ATPase [Post 38.1 72 0.0016 29.1 5.1 107 48-159 523-646 (744)
129 cd01523 RHOD_Lact_B Member of 38.0 82 0.0018 20.7 4.5 30 119-151 58-87 (100)
130 COG0784 CheY FOG: CheY-like re 37.6 96 0.0021 20.9 4.9 26 121-149 4-29 (130)
131 TIGR00215 lpxB lipid-A-disacch 37.5 84 0.0018 26.7 5.4 37 52-88 82-119 (385)
132 PF01012 ETF: Electron transfe 37.3 34 0.00073 25.2 2.6 42 47-88 78-120 (164)
133 PF02875 Mur_ligase_C: Mur lig 37.1 74 0.0016 20.8 4.1 35 123-157 12-48 (91)
134 PF03465 eRF1_3: eRF1 domain 3 35.4 65 0.0014 22.5 3.7 55 123-182 39-112 (113)
135 PLN02297 ribose-phosphate pyro 35.0 2.8E+02 0.006 23.4 11.0 83 62-159 18-105 (326)
136 COG1224 TIP49 DNA helicase TIP 34.0 97 0.0021 26.9 5.0 49 40-88 43-98 (450)
137 PF04723 GRDA: Glycine reducta 33.3 1.1E+02 0.0024 22.5 4.5 37 121-159 4-40 (150)
138 cd01518 RHOD_YceA Member of th 33.0 1.1E+02 0.0024 20.1 4.5 30 120-152 59-88 (101)
139 PTZ00428 60S ribosomal protein 32.8 84 0.0018 27.1 4.5 25 126-150 151-175 (381)
140 PF02684 LpxB: Lipid-A-disacch 32.7 1.3E+02 0.0029 25.8 5.8 41 47-87 70-113 (373)
141 COG1219 ClpX ATP-dependent pro 32.1 54 0.0012 28.0 3.2 28 62-89 101-129 (408)
142 COG2984 ABC-type uncharacteriz 32.1 3.1E+02 0.0068 23.1 9.6 51 32-89 65-116 (322)
143 cd08551 Fe-ADH iron-containing 32.0 1.4E+02 0.003 25.1 5.9 33 49-81 70-103 (370)
144 PF03681 UPF0150: Uncharacteri 31.6 19 0.0004 20.9 0.3 19 130-148 23-41 (48)
145 PRK10618 phosphotransfer inter 31.6 1.6E+02 0.0035 28.4 6.7 31 121-154 688-718 (894)
146 cd03786 GT1_UDP-GlcNAc_2-Epime 31.5 1.6E+02 0.0035 24.0 6.1 43 46-88 75-118 (363)
147 cd08172 GlyDH-like1 Glycerol d 31.4 1.3E+02 0.0028 25.2 5.5 43 49-91 66-109 (347)
148 PRK10886 DnaA initiator-associ 31.4 2.4E+02 0.0053 21.7 9.0 112 41-156 24-143 (196)
149 PF13685 Fe-ADH_2: Iron-contai 31.3 57 0.0012 26.3 3.2 41 51-91 67-108 (250)
150 PRK13584 hisG ATP phosphoribos 31.2 22 0.00047 27.9 0.7 13 128-140 148-160 (204)
151 TIGR00236 wecB UDP-N-acetylglu 31.1 1.7E+02 0.0037 24.2 6.2 43 46-88 73-116 (365)
152 PLN02199 shikimate kinase 30.7 1.4E+02 0.003 25.0 5.4 49 40-89 85-134 (303)
153 cd08177 MAR Maleylacetate redu 30.6 1.4E+02 0.003 24.9 5.6 45 47-91 65-110 (337)
154 PF00391 PEP-utilizers: PEP-ut 30.2 59 0.0013 21.0 2.6 29 61-89 32-60 (80)
155 PF13207 AAA_17: AAA domain; P 30.1 83 0.0018 21.3 3.5 27 62-88 3-30 (121)
156 cd08173 Gro1PDH Sn-glycerol-1- 30.0 1.4E+02 0.0031 24.8 5.5 44 48-91 67-111 (339)
157 KOG0081 GTPase Rab27, small G 29.7 2.1E+02 0.0046 21.9 5.7 30 59-88 124-161 (219)
158 TIGR01426 MGT glycosyltransfer 29.6 1.8E+02 0.004 24.3 6.2 32 55-88 88-119 (392)
159 PF01634 HisG: ATP phosphoribo 28.9 26 0.00056 26.4 0.8 11 130-140 112-122 (163)
160 PF14502 HTH_41: Helix-turn-he 28.9 81 0.0017 18.8 2.7 21 133-153 18-38 (48)
161 cd06388 PBP1_iGluR_AMPA_GluR4 28.7 3.2E+02 0.007 23.0 7.5 103 48-154 53-156 (371)
162 COG1647 Esterase/lipase [Gener 28.6 2E+02 0.0043 23.2 5.7 78 4-84 24-109 (243)
163 PRK01686 hisG ATP phosphoribos 28.4 27 0.00059 27.6 0.8 13 128-140 158-170 (215)
164 TIGR01809 Shik-DH-AROM shikima 28.3 1.3E+02 0.0027 24.5 4.8 36 121-163 124-159 (282)
165 cd07766 DHQ_Fe-ADH Dehydroquin 28.3 1.4E+02 0.0031 24.5 5.2 43 49-91 68-113 (332)
166 cd06356 PBP1_Amide_Urea_BP_lik 28.3 3.3E+02 0.0071 22.2 7.7 49 37-88 48-97 (334)
167 cd08550 GlyDH-like Glycerol_de 28.2 1.3E+02 0.0028 25.2 5.0 44 48-91 66-110 (349)
168 PF13189 Cytidylate_kin2: Cyti 28.1 53 0.0011 24.7 2.4 20 68-87 10-29 (179)
169 cd01524 RHOD_Pyr_redox Member 28.1 1.6E+02 0.0034 18.9 4.5 29 119-150 48-76 (90)
170 PRK09423 gldA glycerol dehydro 27.9 1.6E+02 0.0035 24.8 5.5 44 47-90 72-116 (366)
171 PLN00185 60S ribosomal protein 27.6 1.2E+02 0.0027 26.3 4.7 25 126-150 156-180 (405)
172 PF00862 Sucrose_synth: Sucros 27.5 99 0.0022 27.9 4.2 45 44-89 387-431 (550)
173 PF00595 PDZ: PDZ domain (Also 27.5 1.5E+02 0.0032 18.7 4.2 32 119-150 43-74 (81)
174 PF13528 Glyco_trans_1_3: Glyc 27.4 1.9E+02 0.0042 23.1 5.8 40 47-89 82-121 (318)
175 cd08170 GlyDH Glycerol dehydro 27.4 1.6E+02 0.0036 24.5 5.5 44 47-90 65-109 (351)
176 KOG0743 AAA+-type ATPase [Post 27.3 55 0.0012 28.8 2.6 97 19-134 188-298 (457)
177 PRK13583 hisG ATP phosphoribos 27.0 29 0.00062 27.7 0.8 11 130-140 177-187 (228)
178 TIGR01133 murG undecaprenyldip 26.9 1.5E+02 0.0034 23.9 5.2 38 50-87 81-118 (348)
179 cd01532 4RHOD_Repeat_1 Member 26.6 1.2E+02 0.0026 19.7 3.7 31 121-154 49-81 (92)
180 COG1484 DnaC DNA replication p 26.3 1.4E+02 0.0031 23.9 4.7 41 49-89 96-140 (254)
181 PRK13947 shikimate kinase; Pro 26.1 86 0.0019 22.8 3.2 28 62-89 5-33 (171)
182 cd01528 RHOD_2 Member of the R 25.6 1.7E+02 0.0037 19.2 4.4 30 121-153 57-86 (101)
183 PRK10646 ADP-binding protein; 25.4 2.2E+02 0.0048 21.1 5.2 48 37-84 7-55 (153)
184 KOG1344 Predicted histone deac 25.3 3.5E+02 0.0075 22.0 6.5 56 35-90 224-299 (324)
185 cd06367 PBP1_iGluR_NMDA N-term 25.2 1.2E+02 0.0026 25.1 4.2 38 51-88 55-96 (362)
186 cd04884 ACT_CBS C-terminal ACT 25.1 1.2E+02 0.0026 18.7 3.3 23 134-156 9-31 (72)
187 PF06068 TIP49: TIP49 C-termin 25.0 2.2E+02 0.0047 24.8 5.7 50 40-89 28-84 (398)
188 PRK00843 egsA NAD(P)-dependent 24.9 1.8E+02 0.0039 24.4 5.3 44 48-91 76-120 (350)
189 cd06380 PBP1_iGluR_AMPA N-term 24.8 3.9E+02 0.0085 22.1 7.4 100 48-150 52-154 (382)
190 COG0040 HisG ATP phosphoribosy 24.6 33 0.00072 28.4 0.7 13 128-140 159-171 (290)
191 PF01555 N6_N4_Mtase: DNA meth 24.5 62 0.0014 24.4 2.3 20 125-144 193-212 (231)
192 COG3605 PtsP Signal transducti 24.5 78 0.0017 29.1 3.0 27 62-88 352-378 (756)
193 cd01519 RHOD_HSP67B2 Member of 24.4 1.6E+02 0.0034 19.4 4.1 30 121-153 65-94 (106)
194 cd01534 4RHOD_Repeat_3 Member 24.4 2E+02 0.0043 18.6 4.5 28 121-151 55-82 (95)
195 PF03129 HGTP_anticodon: Antic 24.2 2.1E+02 0.0045 18.5 5.4 47 43-89 13-59 (94)
196 PF06032 DUF917: Protein of un 24.1 1.2E+02 0.0027 25.7 4.1 47 42-89 75-123 (353)
197 COG3150 Predicted esterase [Ge 24.1 2.2E+02 0.0047 22.0 5.0 51 37-89 38-88 (191)
198 PRK11024 colicin uptake protei 24.0 2.8E+02 0.006 19.9 5.5 36 121-156 102-137 (141)
199 TIGR01162 purE phosphoribosyla 24.0 3.1E+02 0.0068 20.5 5.9 76 8-89 8-83 (156)
200 TIGR00070 hisG ATP phosphoribo 23.9 36 0.00078 26.1 0.8 14 127-140 151-164 (182)
201 cd01577 IPMI_Swivel Aconatase- 23.7 1.1E+02 0.0024 20.7 3.0 33 123-155 18-50 (91)
202 PRK05329 anaerobic glycerol-3- 23.7 1.3E+02 0.0029 26.1 4.4 56 32-89 191-250 (422)
203 PRK13265 glycine/sarcosine/bet 23.6 1.8E+02 0.004 21.4 4.3 37 121-159 5-41 (154)
204 PRK14093 UDP-N-acetylmuramoyla 23.6 1.9E+02 0.0041 25.4 5.4 26 123-148 337-363 (479)
205 PRK14089 ipid-A-disaccharide s 23.4 2.4E+02 0.0053 23.8 5.8 31 58-88 75-108 (347)
206 PRK00109 Holliday junction res 23.3 2.9E+02 0.0063 19.9 5.5 42 49-90 44-97 (138)
207 KOG0731 AAA+-type ATPase conta 23.1 45 0.00098 31.4 1.4 62 28-89 307-376 (774)
208 cd01520 RHOD_YbbB Member of th 22.5 2.2E+02 0.0048 19.8 4.7 32 118-151 82-113 (128)
209 PRK08118 topology modulation p 22.5 1E+02 0.0022 22.9 3.0 28 62-89 5-33 (167)
210 TIGR03492 conserved hypothetic 22.5 1.2E+02 0.0027 25.9 3.9 26 59-87 93-118 (396)
211 PRK02399 hypothetical protein; 22.4 2.1E+02 0.0046 24.9 5.2 42 30-71 301-345 (406)
212 COG0703 AroK Shikimate kinase 22.2 99 0.0021 23.6 2.8 28 62-89 6-34 (172)
213 cd01447 Polysulfide_ST Polysul 22.1 1.2E+02 0.0026 19.8 3.1 31 119-152 58-88 (103)
214 PF13477 Glyco_trans_4_2: Glyc 22.1 2.6E+02 0.0056 19.2 5.0 40 50-89 65-106 (139)
215 PRK11267 biopolymer transport 21.9 3E+02 0.0064 19.8 5.3 37 121-157 98-134 (141)
216 TIGR03568 NeuC_NnaA UDP-N-acet 21.8 2.8E+02 0.0062 23.3 5.9 47 43-89 77-124 (365)
217 COG3896 Chloramphenicol 3-O-ph 21.7 1.2E+02 0.0026 23.2 3.1 36 124-159 115-150 (205)
218 cd06389 PBP1_iGluR_AMPA_GluR2 21.5 2.8E+02 0.006 23.3 5.8 41 48-89 47-88 (370)
219 cd01525 RHOD_Kc Member of the 21.5 1.9E+02 0.0041 19.0 4.0 30 121-153 64-93 (105)
220 PRK03839 putative kinase; Prov 21.5 1.1E+02 0.0024 22.6 3.1 27 62-88 4-31 (180)
221 cd01453 vWA_transcription_fact 21.4 2.4E+02 0.0052 21.2 4.9 36 122-158 108-144 (183)
222 cd01080 NAD_bind_m-THF_DH_Cycl 21.4 2.8E+02 0.006 20.8 5.2 37 118-163 41-78 (168)
223 COG0763 LpxB Lipid A disacchar 21.4 2.6E+02 0.0057 24.2 5.5 38 50-87 76-116 (381)
224 KOG0745 Putative ATP-dependent 21.4 1.1E+02 0.0024 27.3 3.3 28 62-89 230-258 (564)
225 PRK05569 flavodoxin; Provision 21.4 3E+02 0.0065 19.3 5.5 48 121-168 82-130 (141)
226 COG0169 AroE Shikimate 5-dehyd 21.3 2E+02 0.0043 23.7 4.7 38 121-165 125-162 (283)
227 cd06339 PBP1_YraM_LppC_lipopro 21.3 2.6E+02 0.0056 22.9 5.5 108 41-156 45-159 (336)
228 cd02020 CMPK Cytidine monophos 21.3 1.1E+02 0.0023 21.4 2.8 28 62-89 3-31 (147)
229 TIGR02801 tolR TolR protein. T 21.2 3E+02 0.0065 19.2 5.4 36 121-156 92-127 (129)
230 PRK00726 murG undecaprenyldiph 21.2 2.4E+02 0.0051 23.1 5.3 39 50-88 82-120 (357)
231 TIGR02640 gas_vesic_GvpN gas v 21.2 3.5E+02 0.0076 21.5 6.1 46 44-89 7-53 (262)
232 PRK06620 hypothetical protein; 20.8 1.9E+02 0.0042 22.4 4.4 31 122-152 85-116 (214)
233 cd03785 GT1_MurG MurG is an N- 20.8 2.5E+02 0.0055 22.7 5.4 39 50-88 80-118 (350)
234 PF07726 AAA_3: ATPase family 20.7 3.4E+02 0.0074 19.7 6.7 83 63-148 4-89 (131)
235 KOG1615 Phosphoserine phosphat 20.6 1.4E+02 0.0029 23.6 3.3 38 49-88 94-134 (227)
236 PF00910 RNA_helicase: RNA hel 20.6 1.2E+02 0.0026 20.5 2.8 30 118-148 46-80 (107)
237 PRK05319 rplD 50S ribosomal pr 20.4 2.2E+02 0.0047 22.2 4.5 37 122-160 119-155 (205)
238 PF04189 Gcd10p: Gcd10p family 20.4 1.5E+02 0.0033 24.6 3.8 27 117-145 197-223 (299)
239 PF09651 Cas_APE2256: CRISPR-a 20.3 1.9E+02 0.004 20.9 3.9 46 45-90 74-125 (136)
240 PF02350 Epimerase_2: UDP-N-ac 20.3 2.1E+02 0.0045 24.0 4.8 49 41-89 49-98 (346)
No 1
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=7.9e-36 Score=229.79 Aligned_cols=180 Identities=83% Similarity=1.328 Sum_probs=165.0
Q ss_pred CCCCchHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhC
Q 030119 3 AYKDKDARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIG 82 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~ 82 (182)
..+++|++.++|++.+||.|+||.+|+.|.|++.++.+|+.++.++..|++++.+.++|+|+|++.+|+++|..+|..++
T Consensus 6 ~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg 85 (187)
T PLN02293 6 NGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIG 85 (187)
T ss_pred cccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHC
Confidence 35789999999999999999999999999999999999999999999999999877899999999999999999999999
Q ss_pred CCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeec
Q 030119 83 AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELP 162 (182)
Q Consensus 83 ~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~ 162 (182)
+|+++++|.++.++......|..+++.+.+++..+.+.+|++||||||+++||+|+.+++++|++.|+++++++++++..
T Consensus 86 ~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~ 165 (187)
T PLN02293 86 AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELP 165 (187)
T ss_pred CCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcC
Confidence 99999999887777666666666676667777666777899999999999999999999999999999999999999998
Q ss_pred CchhhccccCCCeEEeeeeC
Q 030119 163 DLKGRERLNGKPLYVLVESH 182 (182)
Q Consensus 163 ~~~~~~~l~~~~~~sl~~~~ 182 (182)
+.++++++.+.+++||+++.
T Consensus 166 ~~~g~~~l~~~~~~sl~~~~ 185 (187)
T PLN02293 166 ELKGREKLNGKPLFVLVESR 185 (187)
T ss_pred CccHHHHhcCCceEEEEecC
Confidence 88899999999999999763
No 2
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=220.95 Aligned_cols=176 Identities=68% Similarity=1.135 Sum_probs=169.6
Q ss_pred chHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCCchhhHHHHHHHhCC
Q 030119 7 KDARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKG---KNISVVAGIEARGFIFGPPIALAIGA 83 (182)
Q Consensus 7 ~~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~~ 83 (182)
.|+.++.++..+|..|+||++|++|.|...++.||..++.+...+..+++. .++|+|+|++.|||.++-.+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 578999999999999999999999999999999999999999999999976 47999999999999999999999999
Q ss_pred CeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 84 KFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 84 p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
+++.+||..+++|...+.+|..+|+++.++++.+.+.+|++|+||||++.||+|+.++.+++.+.|++++.++|++...+
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~ 163 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPE 163 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccCCCeEEeeeeC
Q 030119 164 LKGRERLNGKPLYVLVESH 182 (182)
Q Consensus 164 ~~~~~~l~~~~~~sl~~~~ 182 (182)
.+++++|.+.|+++|+++.
T Consensus 164 LkGr~kL~~~pl~~Ll~~~ 182 (183)
T KOG1712|consen 164 LKGREKLKGKPLFSLLEYQ 182 (183)
T ss_pred cCCccccCCCccEEEeecC
Confidence 9999999999999999863
No 3
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.1e-33 Score=213.13 Aligned_cols=172 Identities=58% Similarity=0.990 Sum_probs=149.5
Q ss_pred HHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeec
Q 030119 11 INGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 11 ~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k 90 (182)
+++|++..|.+|.||.+++.|.|++.++.+|+.++.+++.++..+.+.++|+|+|++.+|+++|..+|+.+++|+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999999999999999999987789999999999999999999999999999887
Q ss_pred CCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccc
Q 030119 91 PKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERL 170 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l 170 (182)
..+.++...+..++.+++.+.+++..+.+.+|++||||||++|||+|+.++++.|+++|+++++++|++++.+..+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l 162 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKL 162 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhc
Confidence 66543333333444444445565544444589999999999999999999999999999999999999999876677888
Q ss_pred cCCCeEEeeeeC
Q 030119 171 NGKPLYVLVESH 182 (182)
Q Consensus 171 ~~~~~~sl~~~~ 182 (182)
+++|++||++++
T Consensus 163 ~~~~~~sl~~~~ 174 (175)
T PRK02304 163 EGYPVKSLVKFD 174 (175)
T ss_pred CCCceEEEEEeC
Confidence 899999999985
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=100.00 E-value=1.2e-31 Score=204.02 Aligned_cols=168 Identities=53% Similarity=0.911 Sum_probs=144.4
Q ss_pred HhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCC
Q 030119 14 IKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK 93 (182)
Q Consensus 14 ~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~ 93 (182)
|+++++.+|+||.||+.|+|++.++.+|+.++.+++.|+.++.+.++|+|+|++.+|+++|..+|..+++|+..+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 57889999999999999999999999999999999999999987789999999999999999999999999988887665
Q ss_pred CCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccC-
Q 030119 94 LPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNG- 172 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~- 172 (182)
..+...+..++..++.+.+++......+|++|||||||+|||+|+.++++.|+++|++++++++++++.+.++.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 4444443444444444455554444459999999999999999999999999999999999999999987778888865
Q ss_pred CCeEEeeee
Q 030119 173 KPLYVLVES 181 (182)
Q Consensus 173 ~~~~sl~~~ 181 (182)
+|++||+++
T Consensus 161 ~~~~sl~~~ 169 (169)
T TIGR01090 161 VPVFSLLEY 169 (169)
T ss_pred CceEEEEeC
Confidence 899999874
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=194.62 Aligned_cols=174 Identities=48% Similarity=0.788 Sum_probs=158.2
Q ss_pred hHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 8 DARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 8 ~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
.+.++.|.+.+|..|.+|++++.|.|....+.++..+...+..+++.+...++|.|++++.+|+++|..+|+.||+|++.
T Consensus 2 ~~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~ 81 (179)
T COG0503 2 DELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVP 81 (179)
T ss_pred hhHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEE
Confidence 35678899999999999999999999999999999999999999999988789999999999999999999999999999
Q ss_pred eecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhh
Q 030119 88 LRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGR 167 (182)
Q Consensus 88 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~ 167 (182)
+||..+.+.......+..+++...+++..+.+.+|++||||||++.||+|+.++.+++.++|+++++++++++..+.+++
T Consensus 82 vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr 161 (179)
T COG0503 82 VRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGR 161 (179)
T ss_pred EEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccc
Confidence 99998887777666676777666788887888899999999999999999999999999999999999999999998888
Q ss_pred ccccC--CCeEEeeee
Q 030119 168 ERLNG--KPLYVLVES 181 (182)
Q Consensus 168 ~~l~~--~~~~sl~~~ 181 (182)
.++.. .++++|..+
T Consensus 162 ~~l~~~~~~v~~l~~~ 177 (179)
T COG0503 162 KKLEDDGLPVFSLVRI 177 (179)
T ss_pred hhhccCCceEEEEEec
Confidence 88763 888888765
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.97 E-value=4.9e-29 Score=192.29 Aligned_cols=170 Identities=25% Similarity=0.326 Sum_probs=140.4
Q ss_pred HHHHHHhhccccCCCCCCCCceEEe-cccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 9 ARINGIKDQIRVVPNFPKPGIMFQD-ITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 9 ~~~~~~~~~~r~~~~~~~~~~~~~d-~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
+..++++..-|.+|| +|+|.+ ..++..+|+.++.++..|+..+.+.++|+|+|++.+|+++|..+|..+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~ 78 (189)
T PRK09219 3 LLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVF 78 (189)
T ss_pred HHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 456777888888898 877755 455569999999999999999987789999999999999999999999999999
Q ss_pred eecCCCCC--Ccccchhe-eecc-ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 88 LRKPKKLP--GKVISEEY-ILEY-GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 88 ~~k~~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
+||..+.+ +.....++ +.+. +...+++..+.+.+|++||||||+++||+|+.+++++++++|++++++++++++..
T Consensus 79 vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~ 158 (189)
T PRK09219 79 AKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSF 158 (189)
T ss_pred EEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccC
Confidence 99887654 33322221 1111 23356777667779999999999999999999999999999999999999999886
Q ss_pred chhhcccc--CCCeEEeeeeC
Q 030119 164 LKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 164 ~~~~~~l~--~~~~~sl~~~~ 182 (182)
.++++++. ++|++||++++
T Consensus 159 ~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 159 QDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred ccHHHHHHhcCCcEEEEEEee
Confidence 66787774 79999999874
No 7
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=189.99 Aligned_cols=167 Identities=27% Similarity=0.416 Sum_probs=137.4
Q ss_pred HHHHhhccccCCCCCCCCc--eEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeee
Q 030119 11 INGIKDQIRVVPNFPKPGI--MFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 11 ~~~~~~~~r~~~~~~~~~~--~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~ 88 (182)
++++...+||+|++|.+++ .|+|...++. |+.++.++..|++.+ +.++|+|+|++.+|+++|..+|..+++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~ 80 (187)
T PRK12560 3 LKNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMA 80 (187)
T ss_pred hHHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEe
Confidence 5668888999999999998 7999999999 999999999999988 66899999999999999999999999999999
Q ss_pred ecCCCCCCcccchhee-eccccceEE--EeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCch
Q 030119 89 RKPKKLPGKVISEEYI-LEYGRDCLE--MHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLK 165 (182)
Q Consensus 89 ~k~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~ 165 (182)
+|.+...... .+. .+++...++ +..+.+.+|++||||||+++||+|+.+++++++++|+.++++++++++.+.+
T Consensus 81 rk~~~~~~~~---~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~ 157 (187)
T PRK12560 81 RWYPYSLSEL---NYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNN 157 (187)
T ss_pred ccCCCcccce---eEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccc
Confidence 8754321111 110 112212222 2223455899999999999999999999999999999999999999998766
Q ss_pred hhccc---cCCCeEEeeeeC
Q 030119 166 GRERL---NGKPLYVLVESH 182 (182)
Q Consensus 166 ~~~~l---~~~~~~sl~~~~ 182 (182)
+++.+ .++|++||++++
T Consensus 158 g~~~l~~~~gv~v~sl~~~~ 177 (187)
T PRK12560 158 GRKKLFTQTGINVKSLVKID 177 (187)
T ss_pred hHHHHhhccCCcEEEEEEEE
Confidence 77777 489999999873
No 8
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=1.6e-28 Score=189.83 Aligned_cols=170 Identities=23% Similarity=0.332 Sum_probs=139.4
Q ss_pred hHHHHHHhhccccCCCCCCCCceEEec-ccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCee
Q 030119 8 DARINGIKDQIRVVPNFPKPGIMFQDI-TTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFV 86 (182)
Q Consensus 8 ~~~~~~~~~~~r~~~~~~~~~~~~~d~-~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~ 86 (182)
+.++++|.+.=|-+|+ +++|.+. .+...+|+.++.++..|++.+.+.++|+|++++.+|+++|..+|..||+|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4678889998899998 7776552 2223699999999999999998778999999999999999999999999999
Q ss_pred eeecCCCCCC--c---ccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEee
Q 030119 87 PLRKPKKLPG--K---VISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIEL 161 (182)
Q Consensus 87 ~~~k~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~ 161 (182)
++||..+.+. . +...+|.. ++...++++.+.+.+|+|||||||++|||+|+.+++++++++||+++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9998865443 1 11111111 2333566665566799999999999999999999999999999999999999999
Q ss_pred cCchhhcccc--CCCeEEeeeeC
Q 030119 162 PDLKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 162 ~~~~~~~~l~--~~~~~sl~~~~ 182 (182)
.+.++++++. ++|++||+++.
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~~~~ 179 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLARIQ 179 (191)
T ss_pred cCccHHHHHHhcCCcEEEEEEEe
Confidence 8777888884 79999999874
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.96 E-value=9.1e-28 Score=193.23 Aligned_cols=166 Identities=21% Similarity=0.415 Sum_probs=140.3
Q ss_pred hHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 8 DARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 8 ~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
.+++++|.+.-|.+|+ +++| +..++.+|+.++.+++.++..+.+.++|+|++++.+|+++|.++|.+||+|+++
T Consensus 83 ~~l~~~l~~~~rilpg----g~~~--~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vi 156 (268)
T TIGR01743 83 EELCQSLSEPERILPG----GYLY--LTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVI 156 (268)
T ss_pred HHHHHHHHHCCCcccC----CeEE--echhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEE
Confidence 3566777777788887 6555 778999999999999999999987799999999999999999999999999999
Q ss_pred eecCCCC-CCcccchheeecccc--ceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCc
Q 030119 88 LRKPKKL-PGKVISEEYILEYGR--DCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDL 164 (182)
Q Consensus 88 ~~k~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~ 164 (182)
+||..+. ++.+.+.+|...... ..+++.+..+.+|++||||||+++||+|+.+++++++++|+++++++|++++..
T Consensus 157 vRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~- 235 (268)
T TIGR01743 157 VRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEG- 235 (268)
T ss_pred EEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCC-
Confidence 9998775 566666666543322 256777777789999999999999999999999999999999999999999874
Q ss_pred hhhccccCCCeEEeeeeC
Q 030119 165 KGRERLNGKPLYVLVESH 182 (182)
Q Consensus 165 ~~~~~l~~~~~~sl~~~~ 182 (182)
+++++ ..+++||++++
T Consensus 236 -~~~~l-~~~~~SL~~~~ 251 (268)
T TIGR01743 236 -VDEKL-VDDYMSLLTLS 251 (268)
T ss_pred -ChHHc-CCCceEEEEEe
Confidence 44555 35899998863
No 10
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=183.94 Aligned_cols=141 Identities=24% Similarity=0.374 Sum_probs=123.9
Q ss_pred CCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeec
Q 030119 27 PGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILE 106 (182)
Q Consensus 27 ~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~ 106 (182)
++..|+|.+.++.+|+.++.+++.|++.+.+.++|.|+|++.+|+++|..+|..+|+|++++||..+.++.
T Consensus 41 ~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g~--------- 111 (187)
T PRK13810 41 KSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYGT--------- 111 (187)
T ss_pred cCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccCC---------
Confidence 35799999999999999999999999999877999999999999999999999999999999987543222
Q ss_pred cccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc--CCCeEEeeeeC
Q 030119 107 YGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~--~~~~~sl~~~~ 182 (182)
+.+ ..+.+.+|++|+||||++|||+|+.+++++++++|++++++++++++.. +++++++ |+|++||++++
T Consensus 112 ---~~~--~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~~~~ 183 (187)
T PRK13810 112 ---GSR--FVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEADVELVPLVSAS 183 (187)
T ss_pred ---Cce--EEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEEEHH
Confidence 111 1255668999999999999999999999999999999999999999875 6788885 89999999863
No 11
>PRK09213 pur operon repressor; Provisional
Probab=99.96 E-value=2.4e-27 Score=191.20 Aligned_cols=166 Identities=23% Similarity=0.424 Sum_probs=139.2
Q ss_pred hHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 8 DARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 8 ~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
++++++|++..|-+|| +++ ++..++.+|+.++.+++.++..+.+.++|+|++++.+|+++|..+|..||+|+++
T Consensus 85 ~~L~~~L~~~~rilpG----gf~--y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vi 158 (271)
T PRK09213 85 EELCERLSEPDRILPG----GYL--YLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVI 158 (271)
T ss_pred HHHHHHHHhCCccCCC----CeE--EeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 3456777777777777 654 4778999999999999999999987789999999999999999999999999999
Q ss_pred eecCCCC-CCcccchheeeccc--cceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCc
Q 030119 88 LRKPKKL-PGKVISEEYILEYG--RDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDL 164 (182)
Q Consensus 88 ~~k~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~ 164 (182)
+||..+. ++.+.+.+|..... ...+++.+..+.+|++||||||+++||+|+.+++++++++|+++++++|++++.+
T Consensus 159 vRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~- 237 (271)
T PRK09213 159 VRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKE- 237 (271)
T ss_pred EEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCC-
Confidence 9998765 56666666644332 2356777777889999999999999999999999999999999999999999874
Q ss_pred hhhccccCCCeEEeeeeC
Q 030119 165 KGRERLNGKPLYVLVESH 182 (182)
Q Consensus 165 ~~~~~l~~~~~~sl~~~~ 182 (182)
+++++ ..+++||++++
T Consensus 238 -~~~~l-~~~~~SL~~~~ 253 (271)
T PRK09213 238 -PEERL-VDDYVSLLKLS 253 (271)
T ss_pred -Chhhc-CCceEEEEEEe
Confidence 34554 45899999874
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.95 E-value=4.6e-26 Score=181.60 Aligned_cols=160 Identities=28% Similarity=0.419 Sum_probs=128.8
Q ss_pred hhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCC
Q 030119 15 KDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKL 94 (182)
Q Consensus 15 ~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~ 94 (182)
.+.++++|+ | |+|++.++.+|+.++.++..++..+.+.++|+|++++.+|+++|..+|..||+|++++||.++.
T Consensus 73 ~~ri~~~~~----g--y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~ 146 (238)
T PRK08558 73 KARIKVDDE----G--YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKET 146 (238)
T ss_pred HhhcccCCC----C--EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCC
Confidence 444455554 4 7899999999999999999999999877899999999999999999999999999999876543
Q ss_pred C-Ccccchheeecc-c-cceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc
Q 030119 95 P-GKVISEEYILEY-G-RDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 95 ~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
. +..+. .|.... + ...+++....+.+|++||||||+++||+|+.+++++++++||++++++|++++.+. +++++.
T Consensus 147 ~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~-~~~~l~ 224 (238)
T PRK08558 147 GVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV-GIDRAR 224 (238)
T ss_pred CCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch-HHHHHh
Confidence 2 22222 332111 1 12455555566799999999999999999999999999999999999999998763 466653
Q ss_pred ---CCCeEEeeeeC
Q 030119 172 ---GKPLYVLVESH 182 (182)
Q Consensus 172 ---~~~~~sl~~~~ 182 (182)
++|+.+|+++.
T Consensus 225 ~~~~vpv~sl~~~~ 238 (238)
T PRK08558 225 EETDAPVDALYTLE 238 (238)
T ss_pred HhcCCCEEEEEEeC
Confidence 89999999874
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=9.3e-26 Score=176.12 Aligned_cols=141 Identities=18% Similarity=0.279 Sum_probs=122.8
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY 107 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 107 (182)
+..|+|++.++.+|+.++.++..+++.+.+.++|+|+|++.+|+++|..+|..+++|+.+.||..+.++..
T Consensus 36 S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~--------- 106 (206)
T PRK13809 36 TPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPS--------- 106 (206)
T ss_pred CCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCc---------
Confidence 46899999999999999999999999987668999999999999999999999999999999877655432
Q ss_pred ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc--CCCeEEeeee
Q 030119 108 GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLVES 181 (182)
Q Consensus 108 ~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~--~~~~~sl~~~ 181 (182)
+.+++ .+.+.+|++|+|||||+|||+|+.++++.|+++|+++++++|++++.. ++.++++ ++|++||+++
T Consensus 107 --~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~-~~~~~l~~~gi~v~sl~~~ 178 (206)
T PRK13809 107 --DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQK-GACQPLGPQGIKLSSVFTV 178 (206)
T ss_pred --CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcc-cHHHHHHhcCCCEEEEEEH
Confidence 12322 234568999999999999999999999999999999999999999764 5677774 7999999986
No 14
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=3.1e-25 Score=169.57 Aligned_cols=137 Identities=23% Similarity=0.338 Sum_probs=117.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY 107 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 107 (182)
+..|+|.+.+..+|+.++.+++.|++.+.+ .|+|+|++.+|+++|..+|..+|+|+++.||.++..+..
T Consensus 29 S~~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~--------- 97 (176)
T PRK13812 29 SEYYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGTG--------- 97 (176)
T ss_pred CCEEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCCCC---------
Confidence 358999999999999999999999999854 389999999999999999999999999999876432211
Q ss_pred ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccc--cCCCeEEeeee
Q 030119 108 GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERL--NGKPLYVLVES 181 (182)
Q Consensus 108 ~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l--~~~~~~sl~~~ 181 (182)
..++ +.+.+|++|+||||+++||+|+.++++.|++.|+++++++|++++.. ++++++ .|+|++||+++
T Consensus 98 --~~~~---g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~-~~~~~l~~~g~~v~sL~~~ 167 (176)
T PRK13812 98 --NRIE---GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREE-GARENLADHDVELEALVTA 167 (176)
T ss_pred --CeEE---ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCc-chHHHHHhcCCcEEEEEeH
Confidence 0111 45668999999999999999999999999999999999999999874 466776 38999999986
No 15
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.93 E-value=5.7e-25 Score=167.85 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=124.5
Q ss_pred cccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCCchhhHHHHHHHhCCC-----eeeeecC
Q 030119 18 IRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKG-KNISVVAGIEARGFIFGPPIALAIGAK-----FVPLRKP 91 (182)
Q Consensus 18 ~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~-~~~d~Iv~v~~~G~~~a~~la~~l~~p-----~~~~~k~ 91 (182)
+.+-.|.+ +..|+|.+.++.+|+.++.++..+++.+.+ .++|+|+|++.+|+++|..+|..+++| +++.+|.
T Consensus 14 f~l~SG~~--s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~ 91 (173)
T TIGR00336 14 FTLSSGRK--SPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKE 91 (173)
T ss_pred EEECCCCc--CCEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCC
Confidence 33334444 458999999999999999999999999876 589999999999999999999999999 8888876
Q ss_pred CCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc
Q 030119 92 KKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
.+..+.. .. ..+.+.+|++||||||+++||+|+.++++.|+++|+++++++|++++...++++++.
T Consensus 92 ~k~~g~~------------~~--~~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~ 157 (173)
T TIGR00336 92 AKDHGEG------------GN--IEGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFE 157 (173)
T ss_pred cccCCCC------------Cc--eecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHH
Confidence 5432221 11 113455899999999999999999999999999999999999999998766777774
Q ss_pred ---CCCeEEeeeeC
Q 030119 172 ---GKPLYVLVESH 182 (182)
Q Consensus 172 ---~~~~~sl~~~~ 182 (182)
++|++||++++
T Consensus 158 ~~~gv~~~sl~~~~ 171 (173)
T TIGR00336 158 KEYGLPVISLITLK 171 (173)
T ss_pred HhcCCeEEEEEeHh
Confidence 89999999873
No 16
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=9.8e-25 Score=166.03 Aligned_cols=135 Identities=30% Similarity=0.465 Sum_probs=115.5
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY 107 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 107 (182)
+..|+|...++.+|+.++.+++.|+..+ ++|+|+|++.+|+++|..+|..+|+|++++||..+..+.
T Consensus 28 s~~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~---------- 94 (170)
T PRK13811 28 SRYYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGK---------- 94 (170)
T ss_pred CCEEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCCC----------
Confidence 3578999999999999999999887654 689999999999999999999999999999987543321
Q ss_pred ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc--CCCeEEeeee
Q 030119 108 GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLVES 181 (182)
Q Consensus 108 ~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~--~~~~~sl~~~ 181 (182)
.... .+.+ +|++|+||||+++||+|+.++++.|+++|++++++++++++.+ ++.+++. |+|++||+++
T Consensus 95 --~~~~--~g~~-~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~gv~~~sl~~~ 164 (170)
T PRK13811 95 --AGLI--IGDV-KGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAELGITLTPLVRV 164 (170)
T ss_pred --cceE--Eccc-CCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhcCCcEEEEeEH
Confidence 1111 2445 8999999999999999999999999999999999999999875 4666663 8999999986
No 17
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.93 E-value=1.9e-24 Score=168.46 Aligned_cols=146 Identities=20% Similarity=0.348 Sum_probs=116.9
Q ss_pred CCCceEEecccccCCHHHHHHHHHHHHHHhc--CCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchhe
Q 030119 26 KPGIMFQDITTLLLKPKEFKDTIDMFVERYK--GKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEY 103 (182)
Q Consensus 26 ~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~--~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~ 103 (182)
.++..|+|+..+..+|+.++.+++.|+..+. +.++|+|+|++.+|+++|..+|+.|++|+...++.+..++...
T Consensus 50 ~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~---- 125 (200)
T PRK02277 50 APKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGE---- 125 (200)
T ss_pred CCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccc----
Confidence 4568999999999999999999999999873 3489999999999999999999999999988765432111110
Q ss_pred eeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeeeC
Q 030119 104 ILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVESH 182 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~~ 182 (182)
...+.+......+ +|++||||||++|||+|+.++++.|++.|+++++++|++++. +.+++.++|++||+++.
T Consensus 126 ---~~~~~~~~~~~~~-~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~~~vpv~sl~~~~ 197 (200)
T PRK02277 126 ---KKTGSFSRNFASV-EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEIDGVPVYSLIRVV 197 (200)
T ss_pred ---cccceeccccccC-CcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhhcCCCeEEEEEEE
Confidence 0001111111233 899999999999999999999999999999999999999985 45567799999999863
No 18
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.92 E-value=6.5e-24 Score=163.74 Aligned_cols=136 Identities=25% Similarity=0.402 Sum_probs=115.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheee
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYIL 105 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~ 105 (182)
+..|+|++.++.+|+.++.++..|+.++... ++|+|+|++.+|+++|..+|+.+++|+++.++...
T Consensus 25 s~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~------------ 92 (187)
T TIGR01367 25 SPYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG------------ 92 (187)
T ss_pred CCeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC------------
Confidence 3589999999999999999999999999764 88999999999999999999999999988875431
Q ss_pred ccccceEEEee-cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeeeC
Q 030119 106 EYGRDCLEMHV-GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVESH 182 (182)
Q Consensus 106 ~~~~~~~~~~~-~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~~ 182 (182)
.+.+.. ..+.+|++||||||+++||+|+.++++.|++.|+++++++|++++.+ +.+...++|++||++++
T Consensus 93 -----~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~~~~~~~~~sl~~~~ 163 (187)
T TIGR01367 93 -----GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGKPDSGVPLMSLKELE 163 (187)
T ss_pred -----cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCcccCCCCEEEEEEEe
Confidence 111111 13448999999999999999999999999999999999999999874 33445689999999873
No 19
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.92 E-value=3.3e-24 Score=184.87 Aligned_cols=140 Identities=21% Similarity=0.333 Sum_probs=123.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY 107 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 107 (182)
+..|+|.+.++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|..+|..+++|+++.||..+.++..
T Consensus 313 S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~--------- 383 (477)
T PRK05500 313 FSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTR--------- 383 (477)
T ss_pred CCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCCC---------
Confidence 36899999999999999999999999998778999999999999999999999999999999876544322
Q ss_pred ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc--CCCeEEeeeeC
Q 030119 108 GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 108 ~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~--~~~~~sl~~~~ 182 (182)
. +..+.+.+|++|+|||||+|||+|+.++++.|++.|+++++++|++++.. +++++++ ++|++||++++
T Consensus 384 ---~--~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~gv~~~Sl~tl~ 454 (477)
T PRK05500 384 ---R--LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSHGYQAYSVLTIS 454 (477)
T ss_pred ---c--eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhcCCCEEEEEEHH
Confidence 1 12355669999999999999999999999999999999999999999976 5777774 79999999873
No 20
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.92 E-value=1e-23 Score=164.66 Aligned_cols=139 Identities=29% Similarity=0.402 Sum_probs=117.5
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeec
Q 030119 29 IMFQDITTLLLKPKEFKDTIDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILE 106 (182)
Q Consensus 29 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~ 106 (182)
..|+|.+.++.+|+.++.++..|+.++.+. ++|+|+|++.+|+++|..+|+.|++|+++.++..+..+..
T Consensus 32 ~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~-------- 103 (202)
T PRK00455 32 PYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEG-------- 103 (202)
T ss_pred CeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCC--------
Confidence 589999999999999999999999999776 8999999999999999999999999999998754322211
Q ss_pred cccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc--CCCeEEeeeeC
Q 030119 107 YGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~--~~~~~sl~~~~ 182 (182)
..++ .....|++||||||+++||+|+.++++.|++.|+++++++|++++.. ++.+.+. +++++||++++
T Consensus 104 ---~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~~-~~~~~~~~~g~~~~sl~~~~ 174 (202)
T PRK00455 104 ---GQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQS-AAQEVFADAGVPLISLITLD 174 (202)
T ss_pred ---ceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECcc-hHHHHHHhcCCcEEEEeeHH
Confidence 1121 22337999999999999999999999999999999999999999863 4555553 89999999863
No 21
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=161.15 Aligned_cols=153 Identities=23% Similarity=0.325 Sum_probs=119.6
Q ss_pred HhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCC
Q 030119 14 IKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK 93 (182)
Q Consensus 14 ~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~ 93 (182)
+....||+|+|+.++..+++..+++.+|..++.+++.|+..+.. ++|+|+|++.+|+++|..+|+.+++|++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45667999999998888999999999999999999999999976 78999999999999999999999999988876543
Q ss_pred CC--Ccccchheeeccccc-eEEEeecc--cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhh
Q 030119 94 LP--GKVISEEYILEYGRD-CLEMHVGA--VESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGR 167 (182)
Q Consensus 94 ~~--~~~~~~~~~~~~~~~-~~~~~~~~--~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~ 167 (182)
.. .......+....+.. .+.+.... ..+|++||||||+++||+|+.++++.|+++||+++++++++++.+...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~ 165 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNR 165 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCC
Confidence 21 111111111111111 22221111 1379999999999999999999999999999999999999988765433
No 22
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=160.59 Aligned_cols=161 Identities=27% Similarity=0.350 Sum_probs=128.0
Q ss_pred chHHHHHHhhccccC-CCCCC----CCceEEecccccCCHHHHHHHHHHHHHHhcCC-CCcEEEEeCCCchhhHHHHHHH
Q 030119 7 KDARINGIKDQIRVV-PNFPK----PGIMFQDITTLLLKPKEFKDTIDMFVERYKGK-NISVVAGIEARGFIFGPPIALA 80 (182)
Q Consensus 7 ~~~~~~~~~~~~r~~-~~~~~----~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~-~~d~Iv~v~~~G~~~a~~la~~ 80 (182)
+.++++.+.++---. ++|+. .+..|+|+..+..+|+..+.++..++..+.+. ++|+|+|++.+|+|+|..+|..
T Consensus 3 ~~~~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~ 82 (201)
T COG0461 3 KRELAELLLEKGALKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALA 82 (201)
T ss_pred hHHHHHHHHHcCCeecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHH
Confidence 345666666622111 45552 23689999999999999999999999988774 8999999999999999999999
Q ss_pred hC-CC-eeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 030119 81 IG-AK-FVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 81 l~-~p-~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl 158 (182)
++ .| +++.||..+.+|.. +.++ +...+|++|+|||||+|||+++.++++.|++.|+.+++++++
T Consensus 83 l~~~~~~~~~Rke~K~hG~~-----------~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~i 148 (201)
T COG0461 83 LAHLPPMAYVRKEAKDHGTG-----------GLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVI 148 (201)
T ss_pred hccCCcEEEEeceeccCCCc-----------ceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEE
Confidence 93 23 77888776654432 1222 344489999999999999999999999999999999999999
Q ss_pred EeecCchhhcccc--CCCeEEeeeeC
Q 030119 159 IELPDLKGRERLN--GKPLYVLVESH 182 (182)
Q Consensus 159 ~~~~~~~~~~~l~--~~~~~sl~~~~ 182 (182)
+|+.+ ++.+.+. +++++||++++
T Consensus 149 vDR~~-~~~~~~~~~g~~~~sl~tl~ 173 (201)
T COG0461 149 VDRQS-GAKEVLKEYGVKLVSLVTLS 173 (201)
T ss_pred Eecch-hHHHHHHhcCCceEEEeeHH
Confidence 99973 4555554 89999999863
No 23
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.88 E-value=8.1e-22 Score=156.48 Aligned_cols=164 Identities=19% Similarity=0.305 Sum_probs=116.6
Q ss_pred HHHHhhccccCCCCCCCCceEEecccccCCH---HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCC-ee
Q 030119 11 INGIKDQIRVVPNFPKPGIMFQDITTLLLKP---KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAK-FV 86 (182)
Q Consensus 11 ~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~---~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p-~~ 86 (182)
=.+|..++|.+|+++ .|+..++.++ +.++.+++.|+..+...++|+|+|++.+|+++|..+|++||++ ++
T Consensus 39 ~~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~v 112 (233)
T PRK06031 39 GRQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYV 112 (233)
T ss_pred CCEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCce
Confidence 346778888888865 3577788887 5567799999999977789999999999999999999999964 44
Q ss_pred eeecCCCCC-Ccccch---heeeccccceEEEeec--ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEe
Q 030119 87 PLRKPKKLP-GKVISE---EYILEYGRDCLEMHVG--AVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160 (182)
Q Consensus 87 ~~~k~~~~~-~~~~~~---~~~~~~~~~~~~~~~~--~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~ 160 (182)
.+++.++.. ...... ++......+.+++... ...+|++||||||+++||+|+.+++++|+++|+++++++++++
T Consensus 113 pl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~ 192 (233)
T PRK06031 113 PLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAML 192 (233)
T ss_pred EEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEE
Confidence 444333221 000000 0100011123333321 2348999999999999999999999999999999999999999
Q ss_pred ecCchhhccccC------CCeEEeeee
Q 030119 161 LPDLKGRERLNG------KPLYVLVES 181 (182)
Q Consensus 161 ~~~~~~~~~l~~------~~~~sl~~~ 181 (182)
+.+ ++++++++ .++.++..+
T Consensus 193 ~g~-~~~~~l~~~~~~~~~~~~~~~~~ 218 (233)
T PRK06031 193 QSE-RWRESLAAAGPQWPARVVGVFAT 218 (233)
T ss_pred ccc-cHHHHHHhcCCCcccceEEEeec
Confidence 875 46666641 455555543
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=140.56 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=112.9
Q ss_pred ceEEecccccCCHHHHHHHHHHHHHH-hcC--CCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecC--CCCCCcccchhe
Q 030119 29 IMFQDITTLLLKPKEFKDTIDMFVER-YKG--KNISVVAGIEARGFIFGPPIALAIGAKFVPLRKP--KKLPGKVISEEY 103 (182)
Q Consensus 29 ~~~~d~~~l~~~~~~~~~l~~~la~~-~~~--~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~--~~~~~~~~~~~~ 103 (182)
++++|++++=..+.-++.++..|++. +.. .++|+|+|++..|+|+|.++|..||..+...+.+ ++..+...
T Consensus 53 Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~---- 128 (203)
T COG0856 53 DIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGK---- 128 (203)
T ss_pred ceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCc----
Confidence 79999999999999999999999994 332 3899999999999999999999999988765422 22111100
Q ss_pred eeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 104 ILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
.+.+.-+-..+ .||+++||||++|||+|+.++++.|++.|++.+.+.|++++. +...++|+|+.||++.
T Consensus 129 -----~G~iS~NFa~V-~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~---G~dei~gvPi~sLlri 197 (203)
T COG0856 129 -----GGSISSNFASV-EGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK---GVDEIEGVPVESLLRI 197 (203)
T ss_pred -----Cceeecccccc-cCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC---CcccccCcchHHhhee
Confidence 01121111345 899999999999999999999999999999999999999876 6678899999999874
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.84 E-value=1.3e-20 Score=135.68 Aligned_cols=122 Identities=30% Similarity=0.425 Sum_probs=92.2
Q ss_pred cccCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEE
Q 030119 36 TLLLKPKEFKDTIDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLE 113 (182)
Q Consensus 36 ~l~~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 113 (182)
+++.+++.+..+++.++.++.+. ++|.|+|++++|+++|..+|..++.|+.+..+...... .. .............
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYP-GS-DKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEES-EE-EEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccc-cc-hhhhhccCceEEe
Confidence 56789999999999999999654 67789999999999999999999999988765421100 00 0000001111122
Q ss_pred EeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 114 MHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 114 ~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.......+|++||||||+++||+|+.++++.|+++|++++.++|++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2223334999999999999999999999999999999999999885
No 26
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.71 E-value=2.3e-16 Score=121.93 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=88.6
Q ss_pred ccccCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCchhhHHHHHHHhCC---Cee--eeecCCCCCCcccchheeec
Q 030119 35 TTLLLKPKEFKDTIDMFVERYKGK---NISVVAGIEARGFIFGPPIALAIGA---KFV--PLRKPKKLPGKVISEEYILE 106 (182)
Q Consensus 35 ~~l~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~~G~~~a~~la~~l~~---p~~--~~~k~~~~~~~~~~~~~~~~ 106 (182)
..++.+++.++...+.||.++.+. ..++|+|+..||+++|..|++.++. |+. +++..+...+..
T Consensus 8 ~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~-------- 79 (189)
T PLN02238 8 EKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTE-------- 79 (189)
T ss_pred cEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCcc--------
Confidence 355677777777777777777432 5689999999999999999999998 763 344322111110
Q ss_pred cccceEEEee----cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 107 YGRDCLEMHV----GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 107 ~~~~~~~~~~----~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.++...+.. ..+ +|++||||||++|||.|+.++++.|++.|++.+.++|++++..
T Consensus 80 -~~g~~~i~~~~~~~~v-~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~ 138 (189)
T PLN02238 80 -SSGVAKVSGADLKIDV-KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRA 138 (189)
T ss_pred -ccCceeEecCCCCCCC-CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCc
Confidence 111222221 234 9999999999999999999999999999999999999999874
No 27
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.71 E-value=2.2e-16 Score=121.27 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=83.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCCchhhHHHHHHHhCCCee--eeecCCCCCCcccchheeeccccce
Q 030119 37 LLLKPKEFKDTIDMFVERYKG---KNISVVAGIEARGFIFGPPIALAIGAKFV--PLRKPKKLPGKVISEEYILEYGRDC 111 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~---~~~d~Iv~v~~~G~~~a~~la~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~ 111 (182)
.+.+++.+....+.|+.++.+ .+.++|+|++.+|+.+|..+|+.+++|+. ++.+.+. .+.... ..-.
T Consensus 15 ~~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~-~~~~~~-------~~~~ 86 (181)
T PRK09162 15 CLVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRY-RNETTG-------GELV 86 (181)
T ss_pred EeecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEec-CCCccC-------Ccee
Confidence 344566666666666666643 24579999999999999999999999863 2322221 111100 0001
Q ss_pred EEEee-cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 112 LEMHV-GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 112 ~~~~~-~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
+.+.. ..+ +|++|||||||+|||+|+.++++.|++.|++.+.++|++++..
T Consensus 87 ~~~~~~~~v-~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~ 138 (181)
T PRK09162 87 WKVKPRESL-KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTH 138 (181)
T ss_pred EecCCCCCC-CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCc
Confidence 11111 234 8999999999999999999999999999999999999998863
No 28
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.70 E-value=2.2e-16 Score=129.31 Aligned_cols=109 Identities=25% Similarity=0.324 Sum_probs=87.3
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
+.++|++++.||+.+|..+|+.+++|+.+++|.+...... .+......+ +|++||||||+++||+|+
T Consensus 154 ~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~------------~~~~~~~~v-~Gk~VlIVDDIi~TG~Tl 220 (285)
T PRK00934 154 DDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEV------------EIAPKNLDV-KGKDVLIVDDIISTGGTM 220 (285)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeE------------EEecccccc-CCCEEEEEcCccccHHHH
Confidence 3459999999999999999999999999887654321110 011011245 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
.++++.|++.||+.+.++++|.....++.+++.+.++..++.
T Consensus 221 ~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~ 262 (285)
T PRK00934 221 ATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEIIV 262 (285)
T ss_pred HHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEEEE
Confidence 999999999999999999999988878888887666666654
No 29
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.69 E-value=5.4e-16 Score=128.73 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=89.2
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
+..+||+|+.||..+|..+|+.+|.|+.+.+|++...... ....+.+ .+++ +||+|||||||+|||+|+
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~---------~~~~~~~-~gdv-~Gr~viIVDDIidTG~Tl 233 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMN---------TSEVMNI-IGNV-KGKKCILIDDMIDTAGTI 233 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCc---------eeEEEEe-cccc-CCCEEEEEeeecCcHHHH
Confidence 3458999999999999999999999999887654311000 0011111 2456 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
.++++.|++.||+.+.+++.|.....++.+++.+.++..++..
T Consensus 234 ~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~iv~T 276 (320)
T PRK02269 234 CHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKLVVL 276 (320)
T ss_pred HHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEEEEe
Confidence 9999999999999999999999988888888876667766653
No 30
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.69 E-value=4.7e-16 Score=128.11 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=88.6
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCchHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIATGGT 137 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitTG~T 137 (182)
+.++|++|+.||..++..+|+.+++|+.+++|.+...+.. ...... +.+ +|++|+||||+++||+|
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~------------~~~~~~~~~v-~Gr~vIIVDDIidTG~T 226 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDV------------EISLPDAAPW-AGRTPVLVDDIVSTGRT 226 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeE------------EEEeccCccc-CCCEEEEEecccCcHHH
Confidence 4569999999999999999999999999888765321110 111111 234 89999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 138 LCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 138 l~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
+.++++.|++.||+.+.+++.|.....++.+++.+.++..+++-
T Consensus 227 l~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~T 270 (301)
T PRK07199 227 LIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARVVST 270 (301)
T ss_pred HHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEe
Confidence 99999999999999999999999988888888876666666543
No 31
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.68 E-value=1e-15 Score=116.12 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=83.6
Q ss_pred cCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCchhhHHHHHHHhCCCeee--eecCCCCCCcccchheeeccccceE
Q 030119 38 LLKPKEFKDTIDMFVERYKGK---NISVVAGIEARGFIFGPPIALAIGAKFVP--LRKPKKLPGKVISEEYILEYGRDCL 112 (182)
Q Consensus 38 ~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~~G~~~a~~la~~l~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~~ 112 (182)
+.+++.++..+..|+.++.+. ++++|+|+.+||+++|..+++.|++|... +.-.+...... ..+....
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~-------~~~~~~~ 74 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQ-------SSGDVKI 74 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCc-------ccCceEE
Confidence 345666777777777766432 56899999999999999999999987533 32111000000 0000011
Q ss_pred EEe-ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 113 EMH-VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 113 ~~~-~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
... ...+ +||+||||||+++||+|+.++++.|++.|++.+.+++++++..
T Consensus 75 ~~~~~~~~-~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 75 LKDLDLSI-KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred ecCCCCCC-CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 111 1244 7999999999999999999999999999999999999999864
No 32
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.68 E-value=5.6e-16 Score=116.34 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcCC-CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEe
Q 030119 37 LLLKPKEFKDTIDMFVERYKGK-NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH 115 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~~-~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (182)
++.+++.++..++.|+.++.+. ++|+|+|+++||+.+|..|+++|++|.+...+.. +|... +.+..++.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~s---------sY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCIS---------SYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEE---------EECCC-cCCcEEEe
Confidence 3567888888999999998654 5899999999999999999999999975322111 11101 11233333
Q ss_pred ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 116 VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 116 ~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.+...+|++||||||+++||.|+.++.+.+.+ +.+++++++..
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~ 120 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPA 120 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcC
Confidence 33334899999999999999999999999975 56888888764
No 33
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.67 E-value=3.3e-16 Score=121.17 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHHHhcCC---CCcEEEEeC-------CCchhhHHHHHHHhCCC---ee--eeecCCCCCCcccchh
Q 030119 38 LLKPKEFKDTIDMFVERYKGK---NISVVAGIE-------ARGFIFGPPIALAIGAK---FV--PLRKPKKLPGKVISEE 102 (182)
Q Consensus 38 ~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~-------~~G~~~a~~la~~l~~p---~~--~~~k~~~~~~~~~~~~ 102 (182)
..+..+.+.++..|+..+... .+|.|++|| .+||+++..||+.+... +. ..+.+. ......+..
T Consensus 55 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~ 133 (190)
T TIGR00201 55 RGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKAT 133 (190)
T ss_pred CCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHH
Confidence 345566777777777655432 368999998 59998888887776422 11 122222 111111111
Q ss_pred eeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 103 YILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.+.....+.|.+....+ +|++|||||||+|||+|+.++++.|+++|++.|.+++++
T Consensus 134 ~R~~n~~~~f~~~~~~~-~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 134 LRFLNLENAFDLKNNSF-QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHHHhCcEEccCCCC-CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 11111223454432334 799999999999999999999999999999999999885
No 34
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.67 E-value=2.8e-16 Score=124.50 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=83.5
Q ss_pred ccCCHHHHHHHHHHHHHHhc--CCCCcEEEEeC-------CCchhhHHHHHHHhC----CCeeeeecCCCCCCcccchhe
Q 030119 37 LLLKPKEFKDTIDMFVERYK--GKNISVVAGIE-------ARGFIFGPPIALAIG----AKFVPLRKPKKLPGKVISEEY 103 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~--~~~~d~Iv~v~-------~~G~~~a~~la~~l~----~p~~~~~k~~~~~~~~~~~~~ 103 (182)
...+......+++.|+..+. ..++|.||+|| .+||+++..||+.++ .|+...+.+........+...
T Consensus 87 f~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~ 166 (225)
T COG1040 87 FQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALE 166 (225)
T ss_pred hCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHH
Confidence 34456777788888888776 33799999998 689999888888875 444333322222222211111
Q ss_pred eeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEe
Q 030119 104 ILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~ 160 (182)
+.....+.+.+. +.....++|+|||||+|||+|+.++.++|++.|++.|.+++++.
T Consensus 167 rr~nl~~aF~~~-~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar 222 (225)
T COG1040 167 RRRNLKGAFRLK-KGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLAR 222 (225)
T ss_pred HHHhccCCeecC-CCCCCCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEe
Confidence 111122344443 23323389999999999999999999999999999999999873
No 35
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.66 E-value=2.4e-15 Score=115.12 Aligned_cols=118 Identities=14% Similarity=0.262 Sum_probs=86.2
Q ss_pred cccCCHHHHHHHHHHHHHHhcCC-----CCcEEEEeCCCchhhHHHHHHHhCCCee--eeecCCCCCCcccchheeeccc
Q 030119 36 TLLLKPKEFKDTIDMFVERYKGK-----NISVVAGIEARGFIFGPPIALAIGAKFV--PLRKPKKLPGKVISEEYILEYG 108 (182)
Q Consensus 36 ~l~~~~~~~~~l~~~la~~~~~~-----~~d~Iv~v~~~G~~~a~~la~~l~~p~~--~~~k~~~~~~~~~~~~~~~~~~ 108 (182)
.++.+.+.++...+.||.++.+. ...+++|+..||+.+|..|++.|+.|.. ++...+...+.. +
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~---------~ 76 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMS---------T 76 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCc---------c
Confidence 45567777776667776666321 2469999999999999999999999854 444322111111 0
Q ss_pred cceEEEe--e-cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 109 RDCLEMH--V-GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 109 ~~~~~~~--~-~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.+...+. . ..+ +||+|||||||++||.|+.++.+.+++.|++.+.++|+++++.
T Consensus 77 ~~~v~i~~~~~~~v-~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 77 TRDVKILKDLDEDI-RGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred cCceEEecCCCCCC-CCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 1112222 1 234 8999999999999999999999999999999999999999875
No 36
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.66 E-value=2.4e-15 Score=124.65 Aligned_cols=110 Identities=24% Similarity=0.325 Sum_probs=89.5
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGT 137 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~T 137 (182)
+..+|++|+.||..+|..+|+.|+ +|+.++.|.+...+.. ..+. ..+++ +||+|+||||+++||+|
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~-----------~~~~-~~gdv-~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVA-----------TVMN-IIGDV-QGKTCVLVDDLVDTAGT 232 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCce-----------EEEe-cccCC-CCCEEEEEecccCchHH
Confidence 345899999999999999999998 8999988766421110 0111 12566 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 138 LCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 138 l~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
+.++++.|++.||+.+.+++.|.....++.+++.+.++..+++-
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~iv~T 276 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVT 276 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEEEEe
Confidence 99999999999999999999999988888888876667666653
No 37
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.65 E-value=1.8e-15 Score=130.67 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCee--eeecCCCCCCcccchh-eeeccccceEEEee-c
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFV--PLRKPKKLPGKVISEE-YILEYGRDCLEMHV-G 117 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~--~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 117 (182)
+....+++.|++.+.. +.|+|+++|.+|+++|..+|+.+|+|+. ..+++. .+++.... .+.......+.+.+ .
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~--~~r~~i~~~qr~rn~~~~~~~~~~~ 335 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHY--VGRTFIEPTQEMRNLKVKLKLNPMS 335 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeec--cccccCCHHHHHHhhheeEEecccc
Confidence 5677889999988754 7889999999999999999999999984 444432 11111000 00000111233222 2
Q ss_pred ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEee
Q 030119 118 AVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLV 179 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~ 179 (182)
...+||+||||||++|||+|+.++++.|+++||+.|.+++.+..........+...++..|+
T Consensus 336 ~~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li 397 (445)
T PRK08525 336 KVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELI 397 (445)
T ss_pred cccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEE
Confidence 32389999999999999999999999999999999999999976555555555434444443
No 38
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.65 E-value=3.2e-15 Score=123.31 Aligned_cols=123 Identities=24% Similarity=0.252 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeE
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERA 125 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~V 125 (182)
+++++...+.. +..+|++|+.||+.+|..+|+.++ .|+.++.|.+...... ........+++ +||+|
T Consensus 137 la~~i~~~~~~-~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~----------~~~~~~~~~dv-~gr~v 204 (304)
T PRK03092 137 LADYVRDKYDL-DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPN----------QVVANRVVGDV-EGRTC 204 (304)
T ss_pred HHHHHHHhcCC-CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCC----------ceEEEecCcCC-CCCEE
Confidence 34444433322 334999999999999999999999 9999988765211000 00111112456 89999
Q ss_pred EEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 126 LVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 126 LlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
+||||+++||+|+.++++.|++.|++.+.+++.|......+.+++.+.++..++..
T Consensus 205 iIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t 260 (304)
T PRK03092 205 VLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREVVVT 260 (304)
T ss_pred EEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999998887778888876566665543
No 39
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.64 E-value=3.7e-15 Score=123.22 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=87.0
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
+..+|++|+.||+.+|..+|+.||+|+.++.|.+...+.. ..+.+ .+.+ +|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~-----------~~~~~-~~~~-~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVS-----------EVMNI-IGDV-EGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeE-----------EEEee-cccC-CCCEEEEEecccCcHHHH
Confidence 5679999999999999999999999999987655322110 11111 2455 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
.++++.|++.|++.+.+++.|.....++.+++.+..+..++.
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~ 266 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDELVV 266 (309)
T ss_pred HHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCEEEE
Confidence 999999999999999999999888878888886544554443
No 40
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.64 E-value=2.8e-15 Score=122.52 Aligned_cols=107 Identities=26% Similarity=0.340 Sum_probs=87.5
Q ss_pred cEEEEeCCCchhhHHHHHHHhCCCeeeeecCCC-CCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHH
Q 030119 61 SVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK-LPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLC 139 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~ 139 (182)
.+||+|+.||...|..+|..|+.|+.++.|++. .+... +.....+++ +||+|+||||+++||+|+.
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v------------~~~~~~gdV-~gk~~iiVDDiIdTgGTi~ 231 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVV------------EVMNLIGDV-EGKDVVIVDDIIDTGGTIA 231 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeE------------EEeeccccc-CCCEEEEEeccccccHHHH
Confidence 699999999999999999999999999988763 21111 111113667 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 140 AAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 140 ~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
.++++|++.||+.|.+++.|......+.+++++..+..++.
T Consensus 232 ~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~viv 272 (314)
T COG0462 232 KAAKALKERGAKKVYAAATHGVFSGAALERLEASAIDEVIV 272 (314)
T ss_pred HHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCCCEEEE
Confidence 99999999999999999999988877777777655655543
No 41
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.63 E-value=7.6e-15 Score=122.33 Aligned_cols=108 Identities=23% Similarity=0.261 Sum_probs=87.7
Q ss_pred CcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHH
Q 030119 60 ISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLC 139 (182)
Q Consensus 60 ~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~ 139 (182)
..+|++|+.||..+|..+|+.+|+|+.+++|.+...... ..+.+ .+++ +|++|+||||+++||+|+.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~-----------~~~~~-~gdv-~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVA-----------ESINV-LGEV-KNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceE-----------eeEEe-eccC-CCCEEEEEeccccchHHHH
Confidence 348999999999999999999999999988765321100 11221 2456 8999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEEeecCchhhccccCC----CeEEeee
Q 030119 140 AAINLLERVGAEVVECACVIELPDLKGRERLNGK----PLYVLVE 180 (182)
Q Consensus 140 ~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~----~~~sl~~ 180 (182)
++++.|++.||+.+.+++.|.....++.+++.+. ++..+++
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~ 280 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFV 280 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEE
Confidence 9999999999999999999999888888888533 6766654
No 42
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.63 E-value=5.5e-15 Score=113.06 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=84.3
Q ss_pred cccCCHHHHHHHHHHHHHHhcCC----CCcEEEEeCCCchhhHHHHHHHh----CCC--eeeeecCCCCCCcccchheee
Q 030119 36 TLLLKPKEFKDTIDMFVERYKGK----NISVVAGIEARGFIFGPPIALAI----GAK--FVPLRKPKKLPGKVISEEYIL 105 (182)
Q Consensus 36 ~l~~~~~~~~~l~~~la~~~~~~----~~d~Iv~v~~~G~~~a~~la~~l----~~p--~~~~~k~~~~~~~~~~~~~~~ 105 (182)
..+.+++.++.....|+.++.+. +.++|+|+..||+++|..+++.| +.| +.++...+...+.. .
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~------~ 77 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLT------K 77 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCcc------c
Confidence 34568888888888888877542 47899999999999999999999 544 33332111000000 0
Q ss_pred ccccceEE-Ee-ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcC-CeEEEEEEEEeec
Q 030119 106 EYGRDCLE-MH-VGAVESAERALVVDDLIATGGTLCAAINLLERVG-AEVVECACVIELP 162 (182)
Q Consensus 106 ~~~~~~~~-~~-~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~G-a~~v~~~vl~~~~ 162 (182)
........ .. ...+ .|++||||||+++||+|+.++++.|++.| ++.+.+++++++.
T Consensus 78 ~~~~~~~~~~~l~~~v-~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 78 KGLHPQVKPTDIPFDI-EGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred cCcccccccccCCCCC-CCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 00000010 00 1244 89999999999999999999999999998 7889999999873
No 43
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.62 E-value=5.4e-15 Score=122.87 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=87.8
Q ss_pred CcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHH
Q 030119 60 ISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLC 139 (182)
Q Consensus 60 ~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~ 139 (182)
..+|++|+.||..+|..+|+.+++|+.++++.+.... . ..+. + .+++ +||+|+||||+++||+|+.
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~-------~---~~~~--i-~gdV-~gk~viIVDDIidTG~Tl~ 235 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSE-------R---EEGY--I-IGDV-AGKKAILIDDILNTGKTFA 235 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCc-------c---eeec--c-cccc-CCCEEEEEcceeCcHHHHH
Confidence 3489999999999999999999999987765432110 0 0011 1 2456 9999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 140 AAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 140 ~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
++++.|++.||+.+.+++.|.....++.+++.+.++..+++-
T Consensus 236 ~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv~T 277 (323)
T PRK02458 236 EAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEILVT 277 (323)
T ss_pred HHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEEEEE
Confidence 999999999999999999999988888888877777777653
No 44
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.61 E-value=4.9e-15 Score=129.08 Aligned_cols=116 Identities=15% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecccc-ceEEEe--ecc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGR-DCLEMH--VGA 118 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 118 (182)
+....+++.|++... .++|+|+++|.+|+++|..+|+.+|+|+.....+++..+.++.......... -++.+. ...
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~ 374 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDV 374 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccc
Confidence 567788888886653 3789999999999999999999999999753322222222221111000000 012222 233
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+ +||+|+||||++|||+|+.+++++|+++||+.|++.+-.
T Consensus 375 ~-~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 375 L-AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISS 414 (500)
T ss_pred c-CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 3 899999999999999999999999999999999887544
No 45
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.60 E-value=2.8e-14 Score=111.74 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=85.6
Q ss_pred ccccCCHHHHHHHHHHHHHHhcCC---------CCcEEEEeCCCchhhHHHHHHHhC---CCee--eeecCCCCCCcccc
Q 030119 35 TTLLLKPKEFKDTIDMFVERYKGK---------NISVVAGIEARGFIFGPPIALAIG---AKFV--PLRKPKKLPGKVIS 100 (182)
Q Consensus 35 ~~l~~~~~~~~~l~~~la~~~~~~---------~~d~Iv~v~~~G~~~a~~la~~l~---~p~~--~~~k~~~~~~~~~~ 100 (182)
...+.+++.++...+.||.++.+. ++++++|+..||+.+|..|+++|+ .|+. +++-.+ +.+..
T Consensus 24 ~~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vss-Y~~~~-- 100 (211)
T PTZ00271 24 AHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASS-YGTGV-- 100 (211)
T ss_pred ccEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEe-cCCCC--
Confidence 345677777777777777766431 367899999999999999999996 6642 222111 11000
Q ss_pred hheeeccccceEEEe---ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 101 EEYILEYGRDCLEMH---VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~---~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.+.+.+.+. ...+ .||+|||||||++||.|+.++.+.|++.+++.+.+||+++++.
T Consensus 101 ------~s~g~~~i~~~~~~~i-~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 101 ------ETSGQVRMLLDVRDSV-ENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred ------cccCceEEecCCCCCC-CCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 011222222 1245 8999999999999999999999999999999999999999964
No 46
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.60 E-value=2.5e-14 Score=107.43 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=89.6
Q ss_pred cccccCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCchhhHHHHHHHhCCCeee--eecCCCCCCcccchheeeccc
Q 030119 34 ITTLLLKPKEFKDTIDMFVERYKGK---NISVVAGIEARGFIFGPPIALAIGAKFVP--LRKPKKLPGKVISEEYILEYG 108 (182)
Q Consensus 34 ~~~l~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~~G~~~a~~la~~l~~p~~~--~~k~~~~~~~~~~~~~~~~~~ 108 (182)
...++.+.+.++.-...|++++.+. +..+++|+..|+++|+..|.++++.|..+ ..-. ++.+.+. +
T Consensus 7 ~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vS-SYg~~t~--------s 77 (178)
T COG0634 7 IKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVS-SYGGGTS--------S 77 (178)
T ss_pred cceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEe-ccCCCcc--------c
Confidence 3446677777777677777766432 45689999999999999999999988744 2211 1111111 1
Q ss_pred cceEEEee---cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCc
Q 030119 109 RDCLEMHV---GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDL 164 (182)
Q Consensus 109 ~~~~~~~~---~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~ 164 (182)
.+...+.+ .++ +||+||||||+++||.||..+.+.|+..||+.+.++++++++..
T Consensus 78 sg~v~i~kDld~di-~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~ 135 (178)
T COG0634 78 SGEVKILKDLDEDI-KGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPER 135 (178)
T ss_pred CCceEEecccccCC-CCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCccc
Confidence 12233332 244 99999999999999999999999999999999999999999863
No 47
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.60 E-value=1.8e-14 Score=119.19 Aligned_cols=111 Identities=24% Similarity=0.287 Sum_probs=86.7
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
+.++|++++.||+.+|..+|+.+|+|+.+++|.+...... .......+.+ +|++|+||||+++||+|+
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~-----------~~~~~~~~~v-~g~~vliVDDii~tG~Tl 226 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNE-----------VEVMNLVGDV-EGKDVVIVDDIIDTGGTI 226 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCE-----------EEEEeccccc-CCCEEEEEccccCCHHHH
Confidence 4579999999999999999999999999887665321100 0011112345 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
.++++.|++.|++.+.+++.|.....++.+++....+..+++.
T Consensus 227 ~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~~iv~t 269 (308)
T TIGR01251 227 AKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVEEVIVT 269 (308)
T ss_pred HHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999998777777777765556555543
No 48
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=126.16 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc-ccceEEEe--ecc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY-GRDCLEMH--VGA 118 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 118 (182)
+....+++.|++... .+.|+|+++|.+|.++|..+|+.+|+|+.....+.+..+.++........ ....+.+. ...
T Consensus 272 ~~R~~~G~~La~~~~-~~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~ 350 (469)
T PRK05793 272 ESRVRAGRQLYKEYP-VDADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVN 350 (469)
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccc
Confidence 456688999998774 36889999999999999999999999996532111121121110000000 00122222 123
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeec
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELP 162 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~ 162 (182)
+ +||+||||||+++||+|+.++++.|+++||+.|++++.+...
T Consensus 351 v-~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~ 393 (469)
T PRK05793 351 V-EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPV 393 (469)
T ss_pred c-CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCc
Confidence 4 899999999999999999999999999999999999998653
No 49
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.59 E-value=1.9e-14 Score=114.57 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccccCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCchhhHHHHHHHhCC---------Ce-----eeeecCCCCCC
Q 030119 34 ITTLLLKPKEFKDTIDMFVERYKGK---NISVVAGIEARGFIFGPPIALAIGA---------KF-----VPLRKPKKLPG 96 (182)
Q Consensus 34 ~~~l~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~~G~~~a~~la~~l~~---------p~-----~~~~k~~~~~~ 96 (182)
+..++.+.+.++...+.||.++.+. +..+++|+..||+.+++.|.+.++. |. .+++-
T Consensus 53 ~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~v------ 126 (241)
T PTZ00149 53 LTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRV------ 126 (241)
T ss_pred ccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEE------
Confidence 4466778888888888888877532 5569999999999999999999972 21 22221
Q ss_pred cccchheeeccccceEEEee---cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 97 KVISEEYILEYGRDCLEMHV---GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~---~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.+|+.+.+.+++.+.. ..+ +||+|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 127 ----sSY~~~~s~g~v~i~~~~~~~l-~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 127 ----KSYCNDESTGKLEIVSDDLSCL-KDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred ----EEccCCCcCCceEEeccccccc-CCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 1121111222232221 234 8999999999999999999999999999999999999998874
No 50
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.58 E-value=6.6e-15 Score=127.68 Aligned_cols=117 Identities=18% Similarity=0.145 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchhe---eeccccceEEEeecc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEY---ILEYGRDCLEMHVGA 118 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 118 (182)
+....+++.||+... .++|+|++||..|.+.|..+|+.+|+|+.....+++..+.+..... +...-+..+......
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~ 345 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGV 345 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccc
Confidence 567789999998763 3789999999999999999999999999652211111122211110 111111234322333
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEe
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~ 160 (182)
+ +||+|+||||++|||+|+.+++++|+++||+.|++.+-..
T Consensus 346 i-~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 346 V-EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred c-CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 4 8999999999999999999999999999999998887653
No 51
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.58 E-value=5.1e-14 Score=118.99 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=82.0
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccce-EEEe-ec-ccCCCCeEEEEeCccCch
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDC-LEMH-VG-AVESAERALVVDDLIATG 135 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~gk~VLlVDDvitTG 135 (182)
+..+|++|+.||...|..+|..|+.|+.+++|.+...... .+.+. .... .+ ++ +|++||||||+++||
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV-~gr~vIIVDDII~TG 277 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDV-EGKDVLIVDDMIASG 277 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCccc-CCCEEEEEeCCcCcH
Confidence 4569999999999999999999999999998876422111 01111 1111 23 55 899999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc
Q 030119 136 GTLCAAINLLERVGAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 136 ~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
+|+.++++.|++.||+.+.++++|.... .+.+++.
T Consensus 278 ~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~ 312 (382)
T PRK06827 278 GSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFD 312 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHH
Confidence 9999999999999999999999998866 7777774
No 52
>PLN02440 amidophosphoribosyltransferase
Probab=99.58 E-value=1.4e-14 Score=126.22 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee--eecCCCCCCcccchheeecc-ccceEEEee--
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP--LRKPKKLPGKVISEEYILEY-GRDCLEMHV-- 116 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~--~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 116 (182)
+....+++.|++.+.. ++|+|++||.+|+.+|..+|+.+++|+.. ++.+ ..+.++....+... ...+..+..
T Consensus 259 ~~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~r--y~~rt~i~~~q~~r~~~~~~k~~~~~ 335 (479)
T PLN02440 259 ESRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSH--YVGRTFIEPSQKIRDFSVKLKLNPVR 335 (479)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEe--eccccccCcchhhhhhhheeeeeccc
Confidence 4556778888887743 78999999999999999999999999863 3322 22222111000000 111222221
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
..+ +||+||||||++|||+|+.++++.|+++||+.|.++++.
T Consensus 336 ~~v-~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 336 SVL-EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ccc-cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 334 899999999999999999999999999999999999987
No 53
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.57 E-value=4.1e-14 Score=112.39 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=77.6
Q ss_pred ccCCHHHHHHHHHHHHHHhc------C-CCCcEEEEeC-------CCchhhHHHHHH----HhCCCeee--e-ecCCCCC
Q 030119 37 LLLKPKEFKDTIDMFVERYK------G-KNISVVAGIE-------ARGFIFGPPIAL----AIGAKFVP--L-RKPKKLP 95 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~------~-~~~d~Iv~v~-------~~G~~~a~~la~----~l~~p~~~--~-~k~~~~~ 95 (182)
...+....+.+++.|+..+. . ..+|.|++|| .+||+++..+|+ .+++|+.. . +.+....
T Consensus 83 y~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~ 162 (227)
T PRK11595 83 FSRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATAT 162 (227)
T ss_pred HCccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCC
Confidence 34456667777777765431 1 2579999998 469987666655 45777642 2 2211111
Q ss_pred CcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 96 GKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+...+...+.....+.+.+. +.+ +|++|||||||+|||+|+.++++.|++.|++.|.++++.
T Consensus 163 q~~l~~~~R~~n~~~~f~~~-~~~-~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la 224 (227)
T PRK11595 163 QHFLSARLRKRNLKNAFRLE-LPV-QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLC 224 (227)
T ss_pred cccCCHHHHhhhhhhhhccC-CCC-CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEE
Confidence 11111111111111223322 344 899999999999999999999999999999999999987
No 54
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=1.4e-14 Score=126.78 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccc---hheeeccccceEEEeeccc
Q 030119 43 EFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVIS---EEYILEYGRDCLEMHVGAV 119 (182)
Q Consensus 43 ~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (182)
+.+.+++.+...+...+.|+|++||.+|..+|..+|+.+++|+.....+++..+.+.. +..+.......+......+
T Consensus 277 lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v 356 (501)
T PRK09246 277 MGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEF 356 (501)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccc
Confidence 3344444444344333579999999999999999999999998642111111111111 0001000111222222334
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+||+||||||++|||+|+.++++.|+++||+.|.+++++
T Consensus 357 -~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 357 -KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred -cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 899999999999999999999999999999999999986
No 55
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.56 E-value=1.4e-14 Score=125.07 Aligned_cols=114 Identities=21% Similarity=0.151 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee-eecCCCCCCcccchhe---eeccccceEEEeec
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP-LRKPKKLPGKVISEEY---ILEYGRDCLEMHVG 117 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~-~~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 117 (182)
+....+++.|+++.. .++|+|++||..|+++|..+|+.+|+|+.. +.+. +..+.++.... +.......+.....
T Consensus 257 ~~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~-~~~~r~~i~~~q~~R~~~v~~k~~~~~~ 334 (442)
T TIGR01134 257 KARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKN-RYVGRTFIMPTQELRELSVRLKLNPIRE 334 (442)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEe-ccccccccCCCHHHHHHHHhhhcccccc
Confidence 556788899988653 378999999999999999999999999975 2222 22222221000 00000112221123
Q ss_pred ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 030119 118 AVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl 158 (182)
.+ +||+||||||++|||+|+.++++.|+++|++.+++.+.
T Consensus 335 ~~-~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 335 VF-RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred cC-CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 34 89999999999999999999999999999999998877
No 56
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.56 E-value=9.5e-14 Score=114.50 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=85.8
Q ss_pred cEEEEeCCCchhhHHHHHHHh-CCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHHHH
Q 030119 61 SVVAGIEARGFIFGPPIALAI-GAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGTLC 139 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~ 139 (182)
-+|++++.||..+|..+++.+ +.|+.++.|.+...... ..+.+ .+++ +|++|+||||+++||+|+.
T Consensus 153 ~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~-----------~~~~~-~~~v-~g~~viivDDii~TG~Tl~ 219 (302)
T PLN02369 153 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-----------EVMNL-IGDV-KGKVAIMVDDMIDTAGTIT 219 (302)
T ss_pred eEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCccee-----------eeEec-CCCC-CCCEEEEEcCcccchHHHH
Confidence 389999999999999999999 79999988765321110 11111 2456 8999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 140 AAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 140 ~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
++++.|++.|++.+.+++.|.....++.+++.+.++..++.
T Consensus 220 ~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~ 260 (302)
T PLN02369 220 KGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQEVIV 260 (302)
T ss_pred HHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998888878888887655655554
No 57
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.55 E-value=3.8e-14 Score=123.25 Aligned_cols=112 Identities=20% Similarity=0.185 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee--eecCCCCCCcccchheeeccccceEEE--ee-
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP--LRKPKKLPGKVISEEYILEYGRDCLEM--HV- 116 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~--~~- 116 (182)
+..+.+++.|++.... ++|+|++||.+|+++|..+|+.+++|+.. ++++ +.+.+...+.... ....+.+ ..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~--y~grt~i~~~q~~-r~~~v~~k~~~~ 354 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNH--YVGRTFIQPTQQI-RNLGVKLKHNAN 354 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEe--ecCcccccccccc-ccccEEEEeccc
Confidence 6778888899887643 79999999999999999999999999974 3332 2222221111101 1111222 11
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECAC 157 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~v 157 (182)
....+||+||||||+++||+|+.++++.|+++||+.+++++
T Consensus 355 ~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 355 RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred ccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 22238999999999999999999999999999999999988
No 58
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.54 E-value=2.7e-14 Score=124.07 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee-eecCCCCCCcccc---hheeeccccceEEEeec
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP-LRKPKKLPGKVIS---EEYILEYGRDCLEMHVG 117 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~-~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 117 (182)
+....+++.|++.+.. ++|+|++||..|.++|..+|+.+|+|+.. ..+ ++..+.++. +..+.......+.....
T Consensus 269 ~~R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk-~~~~~rt~~~~~q~~R~~~vr~~f~~~~~ 346 (484)
T PRK07272 269 TARKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVK-NQYVARTFIQPTQELREQGVRMKLSAVSG 346 (484)
T ss_pred HHHHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEE-EccCCccccCCCHHHHHHHHhhCcccccc
Confidence 4456888888877643 57999999999999999999999999854 222 222222221 11011111123332223
Q ss_pred ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 030119 118 AVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl 158 (182)
.+ +||+|+||||++|||+|+.++++.|+++||+.+++++.
T Consensus 347 ~~-~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 347 VV-KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred cc-CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 34 89999999999999999999999999999999999999
No 59
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.54 E-value=1.1e-13 Score=115.30 Aligned_cols=109 Identities=25% Similarity=0.368 Sum_probs=87.1
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHH
Q 030119 59 NISVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGT 137 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~T 137 (182)
+..+|++|+.||..+|..+|+.++ .|+.++.|++...... ..+.+ .+.+ +|++|+||||+++||+|
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~-----------~~~~~-~~~v-~g~~viiVDDii~TG~T 245 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA-----------EVLNV-IGDV-KGKTAILVDDMIDTGGT 245 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCcee-----------eeEec-cccC-CCCEEEEEccccCcHHH
Confidence 345899999999999999999995 8999887765321100 01111 2455 89999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 138 LCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 138 l~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
+.++++.|++.|++.+.+++.|.....++.+++.+.++..++.
T Consensus 246 ~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~ 288 (330)
T PRK02812 246 ICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEVIV 288 (330)
T ss_pred HHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEEEE
Confidence 9999999999999999999999988888888887656666654
No 60
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=2.4e-14 Score=124.17 Aligned_cols=115 Identities=20% Similarity=0.148 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeee-ecCCCCCCcccchhe---eeccccceEEEeec
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPL-RKPKKLPGKVISEEY---ILEYGRDCLEMHVG 117 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~-~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 117 (182)
+....+++.||+... .++|+|++||..|.++|..+|+.+|+|+... .+.+ ..+.+..... +...-+..+.....
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~-~~~Rt~i~~~~~~R~~nv~~~f~~~~~ 344 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNR-YVGRTFIQPSQALREQGVKMKLSPVRG 344 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEe-cCCCCCcCCCHHHHHHHHhhhhhhccc
Confidence 567789999997763 3789999999999999999999999999652 2221 1122221110 10011112322223
Q ss_pred ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 118 AVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.+ +||+|+||||++|||+|+.++++.|+++||+.|++.+-.
T Consensus 345 ~v-~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~s 385 (475)
T PRK07631 345 VV-EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISS 385 (475)
T ss_pred cc-CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeC
Confidence 34 899999999999999999999999999999998888765
No 61
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=5.1e-14 Score=121.30 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee-eecCCCCCCcccchheeeccccceEEEe--ecc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP-LRKPKKLPGKVISEEYILEYGRDCLEMH--VGA 118 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 118 (182)
+....+++.|+.... .++|+|+++|..|..+|..+|+.+|+|+.. +.|.+ ..+.++....... ....+.+. ...
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r-~~~rtfi~~~qr~-~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR-YIGRTFIMPSGRE-LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEec-cccccccCcCchh-hhheeeecccccc
Confidence 566788888887764 368999999999999999999999999975 33322 2222221111000 01122221 233
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+ +||+|+||||++|||+|+.++++.|+++||+.|++.+..
T Consensus 332 v-~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 332 I-NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred c-CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 4 899999999999999999999999999999999888754
No 62
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.53 E-value=1.1e-13 Score=118.19 Aligned_cols=109 Identities=27% Similarity=0.364 Sum_probs=89.1
Q ss_pred CcEEEEeCCCchhhHHHHHHHhC------CCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccC
Q 030119 60 ISVVAGIEARGFIFGPPIALAIG------AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIA 133 (182)
Q Consensus 60 ~d~Iv~v~~~G~~~a~~la~~l~------~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvit 133 (182)
..+||+++.||...|..+|..|+ +++.++.|.+...++.. .+.+ .+++ +|++|+||||+++
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-----------~~~l-vgdV-~Gk~vIIVDDIId 346 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE-----------KMDL-VGNV-YDSDVIIVDDMID 346 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE-----------EEec-cCCC-CCCEEEEEcceeC
Confidence 35899999999999999999997 78888877654322110 1221 2566 9999999999999
Q ss_pred chHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeeee
Q 030119 134 TGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVES 181 (182)
Q Consensus 134 TG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~~ 181 (182)
||+|+.++++.|++.||+.+.+++.|......+.+++.+.++..+++-
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~IvvT 394 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVVVT 394 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEEEe
Confidence 999999999999999999999999999988888999977777777653
No 63
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=8.2e-14 Score=120.93 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccc-cceEEEee-ccc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYG-RDCLEMHV-GAV 119 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 119 (182)
+....+++.|+.... .+.|+|++||..|.+.|..+|+.+|+|+.....+.+..+.++......... .-++.+.. ...
T Consensus 275 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~ 353 (474)
T PRK06388 275 QARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREV 353 (474)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEecccccc
Confidence 556688888887753 478999999999999999999999999965222222222222111100010 01122221 122
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.+||+||||||++|||+|+.+++++|+++||+.|++.+-.
T Consensus 354 i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 354 ISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred ccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3899999999999999999999999999999998887665
No 64
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.52 E-value=8.2e-14 Score=121.71 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccc-cceEEEee-ccc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYG-RDCLEMHV-GAV 119 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 119 (182)
+....+++.|++... .+.|+|++||.+|+++|..+|+.+|+|+.....++...+.++....+.... .-++.+.+ ...
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~ 364 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREV 364 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccc
Confidence 667789999998763 378999999999999999999999999966433322222222111100000 00122111 222
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.+||+||||||++|||+|+.++++.|+++|++.|++.+-.
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~s 404 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISS 404 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3899999999999999999999999999999998877654
No 65
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.51 E-value=5e-14 Score=108.48 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=80.6
Q ss_pred ccCCHHHHHHHHHHHHHHhcC--CCCcEEEEeCCCchhhHHHHHHHhCC-CeeeeecCCCCCCcccchheeeccccceEE
Q 030119 37 LLLKPKEFKDTIDMFVERYKG--KNISVVAGIEARGFIFGPPIALAIGA-KFVPLRKPKKLPGKVISEEYILEYGRDCLE 113 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~--~~~d~Iv~v~~~G~~~a~~la~~l~~-p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 113 (182)
.+.+.+.+..++..||.++.+ ..||+|+++.+||+.+|..|+..|++ |+..+....... ... ......
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~-~~~--------~~~~~~ 75 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDE-TAE--------RDGEAK 75 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehh-hcc--------cCCcce
Confidence 456788899999999999963 49999999999999999999999998 555543221110 000 000111
Q ss_pred Ee----ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 030119 114 MH----VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 114 ~~----~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl 158 (182)
+. .+.+ .||+|||||||.+||.||..+.+.|++.....+.++++
T Consensus 76 v~~~~~~d~l-~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 76 VKYPITIDPL-SGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred eecCcccccc-CCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 11 1224 89999999999999999999999999955444444433
No 66
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.48 E-value=4.9e-13 Score=110.93 Aligned_cols=104 Identities=19% Similarity=0.144 Sum_probs=82.7
Q ss_pred CcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEE-eecccCCCCeEEEEeCccCchHHH
Q 030119 60 ISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEM-HVGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 60 ~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
..+|++|+.||...+..++ +++|+.++.|.+. +.. .... ..+++ +||+|+||||+++||+|+
T Consensus 184 ~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--g~~------------~~~~~~~~dv-~gr~vlIVDDIidTG~Tl 246 (326)
T PLN02297 184 NIVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--GDK------------RIVRIKEGNP-AGRHVVIVDDLVQSGGTL 246 (326)
T ss_pred CcEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--CCc------------eEEEeccccc-CCCeEEEEecccCcHHHH
Confidence 3489999999998887776 6889999887653 110 1111 12455 999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhccccC------CCeEEeee
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLNG------KPLYVLVE 180 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~------~~~~sl~~ 180 (182)
.++++.|++.|++.+.+++.|.....++.+++.+ .++..++.
T Consensus 247 ~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~ 294 (326)
T PLN02297 247 IECQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWI 294 (326)
T ss_pred HHHHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEE
Confidence 9999999999999999999999988888888864 35666654
No 67
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.46 E-value=4.2e-13 Score=102.31 Aligned_cols=118 Identities=25% Similarity=0.329 Sum_probs=80.2
Q ss_pred cEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCC------Cccc-----chheee-----cc--ccc-eEEEeecccCC
Q 030119 61 SVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLP------GKVI-----SEEYIL-----EY--GRD-CLEMHVGAVES 121 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~------~~~~-----~~~~~~-----~~--~~~-~~~~~~~~~~~ 121 (182)
-+||++..+|..-|..+|..|++.+..+.+.+... +... ...... .. .+. .+.+ .+++ +
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v-VGDV-~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV-VGDV-K 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE-ES---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE-EEEc-c
Confidence 48999999999999999999999998876544210 0000 000000 00 000 1111 3677 9
Q ss_pred CCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 122 AERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 122 gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
||.++||||+++||+|+.++++.|++.||+.|++++.|......+.+++++.++..++.
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvv 141 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVV 141 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEE
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEE
Confidence 99999999999999999999999999999999999999998888899998778877765
No 68
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.45 E-value=2.6e-13 Score=114.99 Aligned_cols=117 Identities=19% Similarity=0.151 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccc-eEEEee-ccc
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRD-CLEMHV-GAV 119 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 119 (182)
+....+++.|++... .+.|+|+|||.+|.+.|..+|+.+|+|+..-.-++.+.+.++....+..+... ++.+++ ..+
T Consensus 267 ~~R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~ 345 (470)
T COG0034 267 EARKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREV 345 (470)
T ss_pred HHHHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHH
Confidence 457788999998874 37799999999999999999999999998755445555565533222111111 233321 233
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.+||||+||||.+-.|+|++.+++.|+++||+.|++.+-.
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 4999999999999999999999999999999999988655
No 69
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.33 E-value=2.2e-11 Score=90.41 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=79.1
Q ss_pred ccCCHHHHHHHHHHHHHHhcC----CCCcEEEEeCCCchhhHHHHHHHhC------CCeeeeecCCCCCCcccchh-eee
Q 030119 37 LLLKPKEFKDTIDMFVERYKG----KNISVVAGIEARGFIFGPPIALAIG------AKFVPLRKPKKLPGKVISEE-YIL 105 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~----~~~d~Iv~v~~~G~~~a~~la~~l~------~p~~~~~k~~~~~~~~~~~~-~~~ 105 (182)
.+.+++.+......++.++.. .+--+++|+..+|+++|..|++.++ +|+-.+.-.-. ........ ...
T Consensus 5 ~ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~y-RDDl~~~~~~~p 83 (179)
T COG2065 5 EILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLY-RDDLTQKGPLRP 83 (179)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEe-echhhhcCccCC
Confidence 345666666656666655532 2434889999999999999999873 45533211000 00000000 000
Q ss_pred ccccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcC-CeEEEEEEEEeecC
Q 030119 106 EYGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVG-AEVVECACVIELPD 163 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~G-a~~v~~~vl~~~~~ 163 (182)
... . ...+.++ .||+|+|||||+.||+|+.++++.|...| +..+..+|++|++-
T Consensus 84 ~~~-~--t~~~~di-~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGH 138 (179)
T COG2065 84 QAK-T--TILPFDI-TGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGH 138 (179)
T ss_pred ccc-C--ccCcccc-cCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCC
Confidence 000 0 0011345 89999999999999999999999999999 78899999999864
No 70
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.25 E-value=7.1e-11 Score=95.33 Aligned_cols=129 Identities=24% Similarity=0.254 Sum_probs=98.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY 107 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~ 107 (182)
||+-+.+.+++..|...+.+... ..+.+.-+|++++.||..-+..+|..|+..+..+.+.+......
T Consensus 136 gfF~ipVdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v--------- 202 (316)
T KOG1448|consen 136 GFFDIPVDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEV--------- 202 (316)
T ss_pred ceeeccchhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhccccc---------
Confidence 34445578888888876665433 44445568899999999999999999998877765544211000
Q ss_pred ccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccC
Q 030119 108 GRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNG 172 (182)
Q Consensus 108 ~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~ 172 (182)
...-+-.+++ +||.++||||+++|++|+..+++.|.+.||+.|++++.|..+...++|++..
T Consensus 203 --~~~m~LVGDv-~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~ 264 (316)
T KOG1448|consen 203 --DIRMVLVGDV-KGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNE 264 (316)
T ss_pred --ceEEEEEecc-CCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhh
Confidence 1011123777 9999999999999999999999999999999999999999988888888853
No 71
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.14 E-value=5.9e-10 Score=87.52 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=71.6
Q ss_pred cEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEe-ecccCCCCeEEEEeCccCchHHH
Q 030119 61 SVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH-VGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
-++|++.++|++++..+++.++ .++-++...+.. .+. ........ +.++ +|++|||+||+++||+|+
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~t~--------~~~~~~~~lp~~i-~~~~VllvDd~laTG~Tl 140 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--ETL--------EPVEYYVKLPEDI-DERTVIVVDPMLATGGSA 140 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--CCC--------CCEEEEeeCCCcC-CCCEEEEECCcccchHHH
Confidence 3788999999999999999997 455444332211 000 00011111 2345 899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEEeecCchhhcccc
Q 030119 139 CAAINLLERVGAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 139 ~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
..+++.|++.|++.+.+++++..+ ++.+++.
T Consensus 141 ~~ai~~L~~~G~~~I~~~~ll~~~--~gl~~l~ 171 (209)
T PRK00129 141 IAAIDLLKKRGAKNIKVLCLVAAP--EGIKALE 171 (209)
T ss_pred HHHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 999999999999999999998654 5677764
No 72
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.11 E-value=2e-09 Score=83.24 Aligned_cols=126 Identities=21% Similarity=0.190 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee--eecCCCC-----------CCcccchheee---
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP--LRKPKKL-----------PGKVISEEYIL--- 105 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~--~~k~~~~-----------~~~~~~~~~~~--- 105 (182)
+..+.+++.|+..-. .+.-+|+++|+||++.|..+|+.||.|+.. +||-... ++......+..
T Consensus 9 dAGr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 9 DAGRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 344445555443321 133488999999999999999999999844 4554322 11100000000
Q ss_pred -----ccc------c-ceEE-----Eee----cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCc
Q 030119 106 -----EYG------R-DCLE-----MHV----GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDL 164 (182)
Q Consensus 106 -----~~~------~-~~~~-----~~~----~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~ 164 (182)
++- + .+++ ... .. .+|+.|+||||-+.||.||.++++.+++.+++.+.++|-+ ...
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~-~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV--~p~ 164 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPS-LKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV--APE 164 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEccc--CCH
Confidence 000 0 0000 000 12 3899999999999999999999999999999988888877 344
Q ss_pred hhhcccc
Q 030119 165 KGRERLN 171 (182)
Q Consensus 165 ~~~~~l~ 171 (182)
++.+.++
T Consensus 165 ~a~~~l~ 171 (220)
T COG1926 165 DAAAELE 171 (220)
T ss_pred HHHHHHH
Confidence 5555554
No 73
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.10 E-value=2.9e-10 Score=94.55 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeecc--c-cceEEEeeccc
Q 030119 43 EFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEY--G-RDCLEMHVGAV 119 (182)
Q Consensus 43 ~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 119 (182)
....+++.||.. ...+.|+|+++|.+|..-|...|...|+|+....-++.+-+.++...-.+.+ + ..++-.....+
T Consensus 276 ~R~~~G~~LA~e-~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~ 354 (474)
T KOG0572|consen 276 VRLQCGEQLATE-APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQNF 354 (474)
T ss_pred HHHHHHhHhhhc-CCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccchhhc
Confidence 445667777752 2348899999999999999999999999997754444444555432211111 1 11222223445
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+||||+||||.|--|+|+..++++|+++||+.|+..+-.
T Consensus 355 -~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAs 393 (474)
T KOG0572|consen 355 -EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIAS 393 (474)
T ss_pred -CCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecC
Confidence 899999999999999999999999999999998876543
No 74
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.09 E-value=9.8e-10 Score=82.24 Aligned_cols=123 Identities=12% Similarity=0.250 Sum_probs=87.1
Q ss_pred eEEecccccCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCCchhhHHHHHHHh-C------CCe--eeeecCCCCCCc
Q 030119 30 MFQDITTLLLKPKEFKDTIDMFVERYKGK---NISVVAGIEARGFIFGPPIALAI-G------AKF--VPLRKPKKLPGK 97 (182)
Q Consensus 30 ~~~d~~~l~~~~~~~~~l~~~la~~~~~~---~~d~Iv~v~~~G~~~a~~la~~l-~------~p~--~~~~k~~~~~~~ 97 (182)
.+-|++.++.-.-+++.-.+.||+.+.+. .+-+++++..||+.+-+.|-+++ + +|+ -++|-++
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kS----- 102 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKS----- 102 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhh-----
Confidence 44566666666667777778888776543 55588999999999888888886 2 333 2333211
Q ss_pred ccchheeeccccceEEEe----ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 98 VISEEYILEYGRDCLEMH----VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~----~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
|..+++.+.+.+- ...+ .||+||||||+++||+||......+++.+++.+.++.+..++.
T Consensus 103 -----Y~n~~stg~iqiig~d~l~~l-tgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 103 -----YCNDQSTGDIQIIGGDDLSTL-TGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred -----hcCCcccCCceeecCCCHHHh-cCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 1111111222221 1234 8999999999999999999999999999999999999998764
No 75
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.09 E-value=1.2e-09 Score=85.61 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=70.5
Q ss_pred cEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccce-EEEe-ecccCCCCeEEEEeCccCchHH
Q 030119 61 SVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDC-LEMH-VGAVESAERALVVDDLIATGGT 137 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~gk~VLlVDDvitTG~T 137 (182)
-+++++.++|++++..+.+.+. .++.++...+.. .+ .+.. .... +.++ +|++|||+||+++||+|
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~--~t---------~~~~~~~~~lp~~i-~~~~VllvDd~laTG~T 137 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE--ET---------LKPVPYYSKLPEDI-DERTVIVLDPMLATGGT 137 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC--CC---------CCCEEEEecCCCCC-CCCEEEEECCCccchHH
Confidence 4778889999999999999986 355444332210 00 0011 1111 2345 89999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEEeecCchhhcccc
Q 030119 138 LCAAINLLERVGAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 138 l~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
+.++++.|++.|++.+.+++++..+ ++.+++.
T Consensus 138 l~~ai~~L~~~G~~~I~v~~ll~~~--~gl~~l~ 169 (207)
T TIGR01091 138 MIAALDLLKKRGAKKIKVLSIVAAP--EGIEAVE 169 (207)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 9999999999999999999998654 5666663
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.93 E-value=4.2e-08 Score=75.21 Aligned_cols=144 Identities=20% Similarity=0.237 Sum_probs=99.9
Q ss_pred CCCCCceEEe---cccccCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCC-CCCCc
Q 030119 24 FPKPGIMFQD---ITTLLLKPKEFKDTIDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPK-KLPGK 97 (182)
Q Consensus 24 ~~~~~~~~~d---~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~-~~~~~ 97 (182)
.|+.+++|.. -.-+..+|..+...+..|+..+... ++-+++|.++.+..++..++..++-...++...+ ..++.
T Consensus 13 NpKR~fLfVSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~ 92 (191)
T PF15609_consen 13 NPKRAFLFVSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGV 92 (191)
T ss_pred CCCceeEEEecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCC
Confidence 4556666533 1224567999999999999988764 6779999999999999999999985445554333 34443
Q ss_pred ccchheeeccccc---eEEEe-ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcC-CeEEEEEEEEeecCchhh
Q 030119 98 VISEEYILEYGRD---CLEMH-VGAVESAERALVVDDLIATGGTLCAAINLLERVG-AEVVECACVIELPDLKGR 167 (182)
Q Consensus 98 ~~~~~~~~~~~~~---~~~~~-~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~G-a~~v~~~vl~~~~~~~~~ 167 (182)
.....|..+++.- .++.. ...+...+.+++|||-+|||+|+..+++.|.+.- -+.+.++.++|-...+.+
T Consensus 93 ~~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~ 167 (191)
T PF15609_consen 93 PPLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDR 167 (191)
T ss_pred ccceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHH
Confidence 3333454444322 12211 2334467799999999999999999999998764 466778888887665444
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.31 E-value=4.3e-06 Score=67.03 Aligned_cols=97 Identities=24% Similarity=0.324 Sum_probs=59.4
Q ss_pred EEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEe--ecccCCCCeEEEEeCccCchHHH
Q 030119 62 VVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH--VGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
++|++-+.|..+...+.+.+. .+.-.+.-.+.. .+ .+..++.. +..+.++++|||+||++.||+|+
T Consensus 105 ~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~--~t---------~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~ 173 (244)
T PLN02541 105 AVVPILRAGLVLLEHASSVLPATKTYHLGFVRDE--ET---------LQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTI 173 (244)
T ss_pred EEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcc--cc---------cceEEeeccCchhcCCCCEEEEECcchhhhHHH
Confidence 566777889888777766542 222111100000 00 01111111 34454578999999999999999
Q ss_pred HHHHHHHHHcCCe--EEEEEEEEeecCchhhcccc
Q 030119 139 CAAINLLERVGAE--VVECACVIELPDLKGRERLN 171 (182)
Q Consensus 139 ~~~~~~L~~~Ga~--~v~~~vl~~~~~~~~~~~l~ 171 (182)
.++++.|++.|+. .+.+++++ ....|.+++.
T Consensus 174 ~~ai~~L~~~Gv~~~~I~~v~~i--as~~Gl~~i~ 206 (244)
T PLN02541 174 VAAIDELVSRGASVEQIRVVCAV--AAPPALKKLS 206 (244)
T ss_pred HHHHHHHHHcCCCcccEEEEEEE--ECHHHHHHHH
Confidence 9999999999986 45555555 3446777663
No 78
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.92 E-value=6.1e-05 Score=58.74 Aligned_cols=96 Identities=21% Similarity=0.311 Sum_probs=64.2
Q ss_pred EEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEe--ecccCCCCeEEEEeCccCchHHH
Q 030119 62 VVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH--VGAVESAERALVVDDLIATGGTL 138 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gk~VLlVDDvitTG~Tl 138 (182)
++|++-+.|......+.+.+. .++-.+.-.+.. ++ .+...+.. +.++ +++.|+|+|-+++||+|+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rde--et---------~~p~~yy~KLP~~~-~~~~viv~DPMLATG~s~ 140 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDE--ET---------LEPVLYYEKLPEDI-DERTVIVLDPMLATGGSA 140 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecC--cc---------CceehhHHhCCCcc-cCCeEEEECchhhccHhH
Confidence 567788999999999988853 122121111100 00 00111111 2344 899999999999999999
Q ss_pred HHHHHHHHHc-CCeEEEEEEEEeecCchhhcccc
Q 030119 139 CAAINLLERV-GAEVVECACVIELPDLKGRERLN 171 (182)
Q Consensus 139 ~~~~~~L~~~-Ga~~v~~~vl~~~~~~~~~~~l~ 171 (182)
..+++.|++. |++.+.+++++.-+ ++.+++.
T Consensus 141 i~ai~~L~~~G~~~~I~~v~~vAap--eGi~~v~ 172 (210)
T COG0035 141 IAAIDLLKKRGGPKNIKVVSLVAAP--EGIKAVE 172 (210)
T ss_pred HHHHHHHHHhCCCceEEEEEEEecH--HHHHHHH
Confidence 9999999999 78888888888543 5666653
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.78 E-value=0.00013 Score=57.29 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=63.2
Q ss_pred cEEEEeCCCchhhHHHHHHHhC-CCeeeeecCCCCCCcccchheeeccccceEEEe--ecccCCCCeEEEEeCccCchHH
Q 030119 61 SVVAGIEARGFIFGPPIALAIG-AKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH--VGAVESAERALVVDDLIATGGT 137 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gk~VLlVDDvitTG~T 137 (182)
-++|++.++|.++...+...+. .++-.+.-.+.. .+ .+..++.. +..+ ++++|+|+|-+++||+|
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~--~t---------~~p~~~y~~LP~~i-~~~~VillDpmlaTG~s 136 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDE--ET---------LEPVLYYNKLPEDI-ENRKVILLDPMLATGGS 136 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEET--TT---------SSEEEEEEE--TTG-TTSEEEEEESEESSSHH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcC--Cc---------cceeeeHhhCCCCc-cCCEEEEEeccccchhh
Confidence 3778888999999999988873 344333211100 00 01112211 3455 88999999999999999
Q ss_pred HHHHHHHHHHcCC--eEEEEEEEEeecCchhhccc
Q 030119 138 LCAAINLLERVGA--EVVECACVIELPDLKGRERL 170 (182)
Q Consensus 138 l~~~~~~L~~~Ga--~~v~~~vl~~~~~~~~~~~l 170 (182)
+..+++.|++.|. +.+.+++++.- .++.+++
T Consensus 137 ~~~ai~~L~~~G~~~~~I~~v~~ias--~~Gl~~l 169 (207)
T PF14681_consen 137 AIAAIEILKEHGVPEENIIIVSVIAS--PEGLERL 169 (207)
T ss_dssp HHHHHHHHHHTTG-GGEEEEEEEEEE--HHHHHHH
T ss_pred HHHHHHHHHHcCCCcceEEEEEEEec--HHHHHHH
Confidence 9999999999886 45656666533 2466665
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.72 E-value=0.0011 Score=52.72 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=96.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCC------CCc----
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKL------PGK---- 97 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~------~~~---- 97 (182)
|++-+-+.++-..|=+++.+ .+.+.+....+|++-..+...-|...|+.|.+.+..+.-..+- +|.
T Consensus 140 gff~~pvdnlraspfllqyi----qe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp 215 (354)
T KOG1503|consen 140 GFFSIPVDNLRASPFLLQYI----QEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPP 215 (354)
T ss_pred ceecccccccccCHHHHHHH----HHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCC
Confidence 33334455566666554443 4445555556888888888899999999987766555422110 111
Q ss_pred -ccchheeecc-------c-cceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhc
Q 030119 98 -VISEEYILEY-------G-RDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRE 168 (182)
Q Consensus 98 -~~~~~~~~~~-------~-~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~ 168 (182)
.......... . +..+.+ -+++ .|+--++|||+++.-.+..++++.|++.||-.++++..++.....+..
T Consensus 216 ~~~~~t~~~~~~lp~~~~k~kppltv-vgdv-ggriaimvddiiddvqsfvaaae~lkergaykiyv~athgllssdapr 293 (354)
T KOG1503|consen 216 PVVTATTHPSLELPAQISKEKPPLTV-VGDV-GGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLSSDAPR 293 (354)
T ss_pred CccccccCccccCchhhcccCCCeEE-Eecc-CceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeecccccccchh
Confidence 1110110000 0 011221 1566 888899999999999999999999999999999999999887666777
Q ss_pred cccCCCeEEee
Q 030119 169 RLNGKPLYVLV 179 (182)
Q Consensus 169 ~l~~~~~~sl~ 179 (182)
.+++.|+..++
T Consensus 294 ~lees~idevv 304 (354)
T KOG1503|consen 294 LLEESPIDEVV 304 (354)
T ss_pred hhhcCCCceEE
Confidence 78888887765
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=97.01 E-value=0.014 Score=47.34 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHHHHHHHhcCC------CCcEEEEeCC--CchhhH-----HHHHHHh-------CCCee-eeecCCCCC
Q 030119 37 LLLKPKEFKDTIDMFVERYKGK------NISVVAGIEA--RGFIFG-----PPIALAI-------GAKFV-PLRKPKKLP 95 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~~------~~d~Iv~v~~--~G~~~a-----~~la~~l-------~~p~~-~~~k~~~~~ 95 (182)
-+++...++.+|+.|++.+-+. .-|-||.++. +.+|=| ..+-..| |.|.+ .+.-.+.
T Consensus 28 KfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~-- 105 (274)
T PF15610_consen 28 KFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRN-- 105 (274)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccc--
Confidence 4788889999999888876432 3344444443 555422 2222223 33332 2221111
Q ss_pred Ccccchheee---c-----cccceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 96 GKVISEEYIL---E-----YGRDCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 96 ~~~~~~~~~~---~-----~~~~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
.+....|.. + ...+...+..+.+ .||.||++|||-.||++=..+.+.+++.|++-.
T Consensus 106 -~ty~~DYg~Ls~edR~~li~nd~y~ID~~~l-~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~ 169 (274)
T PF15610_consen 106 -QTYCEDYGNLSFEDRKSLISNDTYHIDKEFL-SGKHLIFLDDIKITGSHEDKVRKILKEYGLEND 169 (274)
T ss_pred -cCcccccccCCHHhhhccccCCceEecHHHh-CCcEEEEeccEEecCcHHHHHHHHHHHcCcccc
Confidence 111111110 0 0112344555566 999999999999999999999999999998753
No 82
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.2 Score=40.18 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCceEEecccccCCHHHHHHHHHHHHHHhcCC--CCcE--EEEeCCCc-hhhHHHHHHHhCCCeeeeecCCCCCCcccch
Q 030119 27 PGIMFQDITTLLLKPKEFKDTIDMFVERYKGK--NISV--VAGIEARG-FIFGPPIALAIGAKFVPLRKPKKLPGKVISE 101 (182)
Q Consensus 27 ~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~--~~d~--Iv~v~~~G-~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~ 101 (182)
+.+.|.|.+. ...++.+..++..++..+-.. .+|+ +++++..| ..-+...|...+++.+..+..-. .+..
T Consensus 61 h~di~~df~~-~~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~----g~~r 135 (261)
T KOG1377|consen 61 HSDIFFDFSL-FNSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK----GLNR 135 (261)
T ss_pred cCceeecccc-cccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH----HHhh
Confidence 3456777764 447888888999888876433 7899 99999877 55666777777766555431100 0000
Q ss_pred heeecccc-ceEEEeecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeec
Q 030119 102 EYILEYGR-DCLEMHVGAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELP 162 (182)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~ 162 (182)
..-...+. +.+-+ ..+ ++|.+|+.||+.++|.-+.+. .+.-.-+.++++.+..++.
T Consensus 136 k~~k~~~egG~lll--Aem-s~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq 192 (261)
T KOG1377|consen 136 KLLKDHGEGGVLLL--AEL-SSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQ 192 (261)
T ss_pred hccccCCCCceEEE--EEe-ccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHH
Confidence 00000011 11211 234 788899999977777667666 3333345666666666554
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=94.76 E-value=0.1 Score=40.66 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=42.9
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCC-eEEEEEEEEeecCchhhccccCCCeEEeee
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGA-EVVECACVIELPDLKGRERLNGKPLYVLVE 180 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga-~~v~~~vl~~~~~~~~~~~l~~~~~~sl~~ 180 (182)
.++ ..++|||+=-++.||+|+..+++.|+++|. .....++-......+++.....+|...+++
T Consensus 185 pDI-~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~gak~i~~~fP~itilt 248 (267)
T KOG1017|consen 185 PDI-TSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPTGAKNITRKFPYITILT 248 (267)
T ss_pred Ccc-cceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecchhhHHHHHhCCeEEEEe
Confidence 455 678999999999999999999999999995 333333333233333443345666666554
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=85.65 E-value=10 Score=26.76 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc--hHH--HHHHH
Q 030119 68 ARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT--GGT--LCAAI 142 (182)
Q Consensus 68 ~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT--G~T--l~~~~ 142 (182)
.+.-.+|..+|+.||.+.......+-..| +.++.. +.+ .|++|+||=..... -.- +.-++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~dG--------------E~~v~i~~~v-~g~dv~iiqs~~~~~nd~lmeLll~i 71 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPDG--------------ETYVRIPESV-RGKDVFIIQSTSPPVNDNLMELLLLI 71 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TTS---------------EEEEESS---TTSEEEEE---SSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCCC--------------CEEEEecccc-cCCceEEEEecCCchhHHHHHHHHHH
Confidence 34557999999999998877653321122 233332 455 79999999988875 222 44567
Q ss_pred HHHHHcCCeEEEEE
Q 030119 143 NLLERVGAEVVECA 156 (182)
Q Consensus 143 ~~L~~~Ga~~v~~~ 156 (182)
++++..|++.+.+.
T Consensus 72 ~a~r~~~a~~i~~V 85 (116)
T PF13793_consen 72 DALRRAGAKRITLV 85 (116)
T ss_dssp HHHHHTTBSEEEEE
T ss_pred HHHHHcCCcEEEEe
Confidence 78889998766443
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=80.32 E-value=29 Score=29.17 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred EEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH--
Q 030119 62 VVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT-- 137 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T-- 137 (182)
+++-.-.+.-.+|..+|+.||++.......+-..| +..++. +.+ .|++|+||-..... ...
T Consensus 22 ~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDG--------------E~~v~i~~~v-rg~~V~ivqs~~~p~nd~l~ 86 (330)
T PRK02812 22 LRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADG--------------ELYVQIQESI-RGCDVYLIQPTCAPVNDHLM 86 (330)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC--------------CEEEEeCCCC-CCCEEEEECCCCCCccHHHH
Confidence 33333456678999999999998766543221122 233332 455 89999999885433 222
Q ss_pred -HHHHHHHHHHcCCeEEEEEEE
Q 030119 138 -LCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 138 -l~~~~~~L~~~Ga~~v~~~vl 158 (182)
+..+++.++++|++.+.+..-
T Consensus 87 eLll~~~alr~~ga~ri~~ViP 108 (330)
T PRK02812 87 ELLIMVDACRRASARQITAVIP 108 (330)
T ss_pred HHHHHHHHHHHhCCceEEEEEe
Confidence 445677888999986554433
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=80.27 E-value=28 Score=30.52 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=51.1
Q ss_pred EEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH--
Q 030119 62 VVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT-- 137 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T-- 137 (182)
.++-.-.+.-.+|..+|..||+|...+...+-..| +.+++. +.+ .|+.|+||-..... -..
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDG--------------E~~Vri~e~V-rG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRFADG--------------EVSMQFLESI-RGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCC--------------CEEEEECCCc-CCCeEEEEecCCCCCcHHHH
Confidence 44434455668999999999998876653322222 233332 455 89999998875432 122
Q ss_pred -HHHHHHHHHHcCCeEEEEEEE
Q 030119 138 -LCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 138 -l~~~~~~L~~~Ga~~v~~~vl 158 (182)
+.-++++++++||+.+.+..-
T Consensus 185 ELLllidAlr~agAkrItlViP 206 (439)
T PTZ00145 185 ELLLMISTCRRASAKKITAVIP 206 (439)
T ss_pred HHHHHHHHHHHhccCeEEEEee
Confidence 344567778999886654443
No 87
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=76.39 E-value=44 Score=27.95 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=48.5
Q ss_pred EEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCchH----
Q 030119 62 VVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIATGG---- 136 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitTG~---- 136 (182)
+|++- .+.-.+|..+|+.||+|.......+-..| +..++. +.+ .|++|+||=..-....
T Consensus 8 ~i~~g-~~~~~La~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v-~g~~V~iiqs~~~p~nd~lm 71 (319)
T PRK04923 8 LVFSG-NANKPLAQSICKELGVRMGKALVTRFSDG--------------EVQVEIEESV-RRQEVFVIQPTCAPSAENLM 71 (319)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCc-CCCeEEEEecCCCCCchHHH
Confidence 34443 34568999999999998876543321122 233332 455 7999999866433211
Q ss_pred HHHHHHHHHHHcCCeEEEEE
Q 030119 137 TLCAAINLLERVGAEVVECA 156 (182)
Q Consensus 137 Tl~~~~~~L~~~Ga~~v~~~ 156 (182)
=+.-++++++++|++.+.+.
T Consensus 72 eLl~~~~alr~~~a~~i~~V 91 (319)
T PRK04923 72 ELLVLIDALKRASAASVTAV 91 (319)
T ss_pred HHHHHHHHHHHcCCcEEEEE
Confidence 14455677789999866544
No 88
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.05 E-value=40 Score=27.60 Aligned_cols=73 Identities=14% Similarity=0.272 Sum_probs=46.3
Q ss_pred CchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEe-ecccCCCCeEEEEeCccCchHH---HHHHHHH
Q 030119 69 RGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH-VGAVESAERALVVDDLIATGGT---LCAAINL 144 (182)
Q Consensus 69 ~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~VLlVDDvitTG~T---l~~~~~~ 144 (182)
+.-.+|..+|+.||+|.......+-..|+ ..++ .+.+ .|++|+|+-..-.-... +..+++.
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~FpdGE--------------~~v~i~~~v-~g~~v~i~~~~~~~~d~l~ell~~~~a 71 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFPDGE--------------LYVRILGEI-DGEDVVIISTTYPQDENLVELLLLIDA 71 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECCCCC--------------EEEEECCCc-CCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44579999999999998876543322222 2232 2455 88999888764322221 4456778
Q ss_pred HHHcCCeEEEEE
Q 030119 145 LERVGAEVVECA 156 (182)
Q Consensus 145 L~~~Ga~~v~~~ 156 (182)
++++|++.+...
T Consensus 72 lr~~ga~~i~~v 83 (285)
T PRK00934 72 LRDEGAKSITLV 83 (285)
T ss_pred HHHcCCCeEEEE
Confidence 889999865443
No 89
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.49 E-value=48 Score=27.44 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCchHH---HHHHHH
Q 030119 68 ARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIATGGT---LCAAIN 143 (182)
Q Consensus 68 ~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitTG~T---l~~~~~ 143 (182)
.+.-.+|..+|+.||+|.......+-..| +..++. +.+ .|+.|+||-....--.. +.-+++
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~dG--------------E~~v~i~~~v-~g~~V~ivqs~~~~n~~l~elll~~~ 73 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFPDG--------------ESYVRLDSPV-AGRTVVLVCSLDRPDEKLLPLLFAAE 73 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCC-CCCEEEEECCCCCCcHHHHHHHHHHH
Confidence 34567999999999999876543321122 223332 455 89999999886542222 345667
Q ss_pred HHHHcCCeEEEEE
Q 030119 144 LLERVGAEVVECA 156 (182)
Q Consensus 144 ~L~~~Ga~~v~~~ 156 (182)
+++++|++.+.+.
T Consensus 74 alr~~~a~~i~~V 86 (301)
T PRK07199 74 AARELGARRVGLV 86 (301)
T ss_pred HHHHcCCCeEEEE
Confidence 7889999766444
No 90
>PRK04195 replication factor C large subunit; Provisional
Probab=74.49 E-value=44 Score=29.41 Aligned_cols=111 Identities=17% Similarity=0.266 Sum_probs=63.5
Q ss_pred cccccCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccc
Q 030119 34 ITTLLLKPKEFKDTIDMFVERYKGK--NISVVAGIEARGF-IFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRD 110 (182)
Q Consensus 34 ~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~ 110 (182)
+..+..+.+..+.+..++..+..+. ..-++.|+|..|- .+|..+|+.++.+++...-......... ... .+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i-~~~---i~~- 87 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVI-ERV---AGE- 87 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHH-HHH---HHH-
Confidence 5667788888888777776655332 3446778888775 5899999999987766532110000000 000 000
Q ss_pred eEEEeecccC-CCCeEEEEeCccC-ch----HHHHHHHHHHHHcCCe
Q 030119 111 CLEMHVGAVE-SAERALVVDDLIA-TG----GTLCAAINLLERVGAE 151 (182)
Q Consensus 111 ~~~~~~~~~~-~gk~VLlVDDvit-TG----~Tl~~~~~~L~~~Ga~ 151 (182)
.. ....+. .+++|||+||+=. ++ +.+.+..+.++..+..
T Consensus 88 -~~-~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~ 132 (482)
T PRK04195 88 -AA-TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQP 132 (482)
T ss_pred -hh-ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCC
Confidence 00 001221 3678999998732 22 4467777888765543
No 91
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=74.48 E-value=45 Score=27.73 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH---HHHHH
Q 030119 68 ARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT---LCAAI 142 (182)
Q Consensus 68 ~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T---l~~~~ 142 (182)
.+.-.+|..+|+.||.|.......+-..| +..++. +.+ .|++|+||=..... ... +..++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~FpdG--------------E~~vri~~~v-~g~~V~ii~s~~~~~nd~l~eLll~~ 71 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSDG--------------EISVEINENV-RGKDVFIIQSTCAPTNDNLMELLIMI 71 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEeCCCC-CCCEEEEECCCCCCCcHHHHHHHHHH
Confidence 34468999999999998866543221122 233332 455 89999999665332 222 45567
Q ss_pred HHHHHcCCeEEEEE
Q 030119 143 NLLERVGAEVVECA 156 (182)
Q Consensus 143 ~~L~~~Ga~~v~~~ 156 (182)
+.++++|++.+.+.
T Consensus 72 ~alr~~ga~~i~lV 85 (309)
T PRK01259 72 DALKRASAGRITAV 85 (309)
T ss_pred HHHHHcCCceEEEE
Confidence 78889999765433
No 92
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=74.32 E-value=35 Score=28.28 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=44.6
Q ss_pred hhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc--hHH--HHHHHHHHH
Q 030119 72 IFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT--GGT--LCAAINLLE 146 (182)
Q Consensus 72 ~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT--G~T--l~~~~~~L~ 146 (182)
.+|..+|+.||+|......++-..| +..++. ..+ .|+.|+||-..... -.- +..++++++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v-~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r 66 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADG--------------EIYVQLQESV-RGCDVFLVQPTCPPANENLMELLIMIDACR 66 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCC-CCCeEEEEecCCCCcchHHHHHHHHHHHHH
Confidence 4789999999998876653322222 223332 455 88999999886522 222 445677888
Q ss_pred HcCCeEEEEE
Q 030119 147 RVGAEVVECA 156 (182)
Q Consensus 147 ~~Ga~~v~~~ 156 (182)
++|++.+.+.
T Consensus 67 ~~~a~~i~~V 76 (302)
T PLN02369 67 RASAKRITAV 76 (302)
T ss_pred HcCCCeEEEE
Confidence 9999865433
No 93
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=73.38 E-value=33 Score=27.83 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=51.2
Q ss_pred EecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHh-C-CCeeeeecCCCCC-Ccccchheeeccc
Q 030119 32 QDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAI-G-AKFVPLRKPKKLP-GKVISEEYILEYG 108 (182)
Q Consensus 32 ~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l-~-~p~~~~~k~~~~~-~~~~~~~~~~~~~ 108 (182)
++..+.-.+++.+..+ ++.+...++|+|+++.. +-+..++..+ + +|+++.--..... +-..+.......-
T Consensus 36 ~~~~~a~~d~~~~~~~----~~~l~~~~~DlIi~~gt---~aa~~~~~~~~~~iPVVf~~V~dp~~~~l~~~~~~~~~nv 108 (294)
T PF04392_consen 36 IEYKNAEGDPEKLRQI----ARKLKAQKPDLIIAIGT---PAAQALAKHLKDDIPVVFCGVSDPVGAGLVDSLDRPGKNV 108 (294)
T ss_dssp EEEEE-TT-HHHHHHH----HHHHCCTS-SEEEEESH---HHHHHHHHH-SS-S-EEEECES-TTTTTS-S-SSS--SSE
T ss_pred EEEecCCCCHHHHHHH----HHHHhcCCCCEEEEeCc---HHHHHHHHhcCCCcEEEEEeccChhhhhccccccCCCCCE
Confidence 3444445566554444 34566668999998853 3355555555 4 7998865321110 0000000000000
Q ss_pred cceEE---------EeecccCCCCeE-EEEeCccCc-hHHHHHHHHHHHHcCCeEEE
Q 030119 109 RDCLE---------MHVGAVESAERA-LVVDDLIAT-GGTLCAAINLLERVGAEVVE 154 (182)
Q Consensus 109 ~~~~~---------~~~~~~~~gk~V-LlVDDvitT-G~Tl~~~~~~L~~~Ga~~v~ 154 (182)
.+..+ +-+.-++.-++| +|.|+--++ ...++.+.+..++.|.+.+.
T Consensus 109 TGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~ 165 (294)
T PF04392_consen 109 TGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVE 165 (294)
T ss_dssp EEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEE
Confidence 01111 001223335888 667766553 34566777777788877554
No 94
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=71.87 E-value=33 Score=28.46 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=45.3
Q ss_pred CchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEE-eCccCc-hH---HHHHHH
Q 030119 69 RGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVV-DDLIAT-GG---TLCAAI 142 (182)
Q Consensus 69 ~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlV-DDvitT-G~---Tl~~~~ 142 (182)
+.-.+|..+|+.||.|.......+-..| +..++. +.+ .|+.|+|+ -..... -. -+..++
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~FpdG--------------E~~v~i~~~v-~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 8 SNQELAQKVAKNLGLPLGDVEVKRFPDG--------------ELYVRINESV-RGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCHHHHHHHHHHhCCeeeeeEEEECCCC--------------CEEEEECCCC-CCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 4457999999999998877643321122 223332 455 78899888 543321 12 245567
Q ss_pred HHHHHcCCeEEEEE
Q 030119 143 NLLERVGAEVVECA 156 (182)
Q Consensus 143 ~~L~~~Ga~~v~~~ 156 (182)
++++++|++.+.+.
T Consensus 73 ~a~r~~ga~~i~~v 86 (308)
T TIGR01251 73 DALKRASAKSITAV 86 (308)
T ss_pred HHHHHcCCCeEEEE
Confidence 78889998865443
No 95
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.52 E-value=59 Score=27.17 Aligned_cols=80 Identities=10% Similarity=0.184 Sum_probs=49.3
Q ss_pred EEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hH---
Q 030119 62 VVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GG--- 136 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~--- 136 (182)
.|++ -.+.-.+|..+|+.||++.......+-..| +..++. +.+ .|+.|+||-..... -.
T Consensus 7 ~i~~-~~~~~~la~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v-rg~dV~iv~s~~~~~nd~lm 70 (320)
T PRK02269 7 KLFA-LSSNKELAEKVAQEIGIELGKSSVRQFSDG--------------EIQVNIEESI-RGHHVFILQSTSSPVNDNLM 70 (320)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCC-CCCEEEEEecCCCCccchHH
Confidence 3444 334568999999999998776543322222 223332 455 88999998775321 11
Q ss_pred HHHHHHHHHHHcCCeEEEEEE
Q 030119 137 TLCAAINLLERVGAEVVECAC 157 (182)
Q Consensus 137 Tl~~~~~~L~~~Ga~~v~~~v 157 (182)
-+.-++++++++|++.+.+..
T Consensus 71 elll~~~alr~~~a~~i~~V~ 91 (320)
T PRK02269 71 EILIMVDALKRASAESINVVM 91 (320)
T ss_pred HHHHHHHHHHHhCCCeEEEEE
Confidence 245667888899998764433
No 96
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.55 E-value=68 Score=27.03 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH---HHHH
Q 030119 67 EARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT---LCAA 141 (182)
Q Consensus 67 ~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T---l~~~ 141 (182)
..+.-.+|..+|+.||+|...+...+-..| +.+++. +.+ .|+.|+||-+.... ... +.-+
T Consensus 15 ~~~~~~La~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v-rg~dV~ivqs~~~p~nd~l~eLll~ 79 (332)
T PRK00553 15 LSKAKKLVDSICRKLSMKPGEIVIQKFADG--------------ETYIRFDESV-RNKDVVIFQSTCSPVNDSLMELLIA 79 (332)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCC-CCCEEEEEcCCCCCCchHHHHHHHH
Confidence 345568999999999998876543322222 233332 455 89999999875432 222 3456
Q ss_pred HHHHHHcCCeEEEEEEE
Q 030119 142 INLLERVGAEVVECACV 158 (182)
Q Consensus 142 ~~~L~~~Ga~~v~~~vl 158 (182)
+++++++||+.+.+..-
T Consensus 80 ~~alr~~~a~~i~~ViP 96 (332)
T PRK00553 80 IDALKRGSAKSITAILP 96 (332)
T ss_pred HHHHHHcCCCeEEEEee
Confidence 67788999986544433
No 97
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.84 E-value=55 Score=27.13 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=44.4
Q ss_pred hHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH---HHHHHHHHHH
Q 030119 73 FGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT---LCAAINLLER 147 (182)
Q Consensus 73 ~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T---l~~~~~~L~~ 147 (182)
+|..+|+.+|.+......++-..| ++.++. +.+ .|++|+||--.... ... +--+++.+++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DG--------------E~~vri~~~v-~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~ 65 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANG--------------EIYVRFEESV-RGCDAFVLQSHTAPINKWLMEQLIMIDALKR 65 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCC--------------CEEEEECCCC-CCCEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 478899999998776643322222 233332 455 89999998765442 222 3456778889
Q ss_pred cCCeEEEEEEE
Q 030119 148 VGAEVVECACV 158 (182)
Q Consensus 148 ~Ga~~v~~~vl 158 (182)
+||+.+.+..-
T Consensus 66 ~~a~~i~~ViP 76 (304)
T PRK03092 66 ASAKRITVVLP 76 (304)
T ss_pred cCCCeEEEEEe
Confidence 99986654433
No 98
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=67.29 E-value=77 Score=26.84 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchh--hHHHHHHHhCCCeeeeecCC-CCCCcccchheeeccccceEEEe
Q 030119 39 LKPKEFKDTIDMFVERYKGKNISVVAGIEARGFI--FGPPIALAIGAKFVPLRKPK-KLPGKVISEEYILEYGRDCLEMH 115 (182)
Q Consensus 39 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~--~a~~la~~l~~p~~~~~k~~-~~~~~~~~~~~~~~~~~~~~~~~ 115 (182)
-+++.....-+.|.+.+ +.++|.|++++-||++ .--..|..+|+|++...--. -.+.-+- .++.. ++.....+.
T Consensus 76 p~g~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqM-tTf~~-~g~~~tPlv 152 (357)
T COG3535 76 PNGDEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQM-TTFYL-HGLPATPLV 152 (357)
T ss_pred CCcHHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEE-EEEEE-cCCCCCceE
Confidence 35555555556665554 5689999999999986 33345566799999864221 1111110 01110 010000011
Q ss_pred ecccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeE
Q 030119 116 VGAVESAERALVVDDLIATGGTLCAAINLLERVGAEV 152 (182)
Q Consensus 116 ~~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~ 152 (182)
.-+. +|+++++ ..+.-..+-+.+..+.-+.|+..
T Consensus 153 i~d~-~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~ 186 (357)
T COG3535 153 ICDE-RGNRVII--ETVSNKWAERIARAATVEMGGSA 186 (357)
T ss_pred EEec-CCCEEEE--EeecchhHHHHHHHHHHHcCCeE
Confidence 1133 5666666 78888888888888888998764
No 99
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=65.12 E-value=16 Score=31.07 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=42.3
Q ss_pred CeEEEEeCccCc-----hHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCC-CeEEeeeeC
Q 030119 123 ERALVVDDLIAT-----GGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGK-PLYVLVESH 182 (182)
Q Consensus 123 k~VLlVDDvitT-----G~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~-~~~sl~~~~ 182 (182)
..+||.|..+.+ +.++..+++.+++.|++++-+-.-+ ...++|..+ .+-+|++|+
T Consensus 290 e~LLv~De~lr~~~~~~re~~~~ll~~ve~~ggkV~Ivs~~h-----e~Ge~Lk~lGGiaaILRf~ 350 (352)
T COG1537 290 ETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEH-----EPGERLKALGGIAAILRFP 350 (352)
T ss_pred eeEEeehhhhcccchhhHHHHHHHHHHHHHcCCeEEEEecCC-----cchHHHHhccCeEEEEEec
Confidence 679999999888 5899999999999999987555544 345666653 677888774
No 100
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=64.15 E-value=52 Score=27.56 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=49.6
Q ss_pred CchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCchH-H---HHHHHH
Q 030119 69 RGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIATGG-T---LCAAIN 143 (182)
Q Consensus 69 ~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitTG~-T---l~~~~~ 143 (182)
+.-.+|..+|+.|+.|.......+-.. ++++++. +.+ .|+.|.|+........ . +--+++
T Consensus 12 s~~~La~~ia~~l~~~l~~~~~~rF~D--------------GE~~V~i~EsV-rg~dVfI~qs~~~pvnd~lmELLi~id 76 (314)
T COG0462 12 SNPELAEKIAKRLGIPLGKVEVKRFPD--------------GEIYVRIEESV-RGKDVFIIQSTSPPVNDNLMELLIMID 76 (314)
T ss_pred CCHHHHHHHHHHhCCCcccceeEEcCC--------------CcEEEEecccc-cCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 445799999999999987765332222 2334443 455 8999998776655333 2 334567
Q ss_pred HHHHcCCeEEEEEEEE
Q 030119 144 LLERVGAEVVECACVI 159 (182)
Q Consensus 144 ~L~~~Ga~~v~~~vl~ 159 (182)
+++.+||+.+.+..-.
T Consensus 77 A~k~asA~~It~ViPY 92 (314)
T COG0462 77 ALKRASAKRITAVIPY 92 (314)
T ss_pred HHHhcCCceEEEEeec
Confidence 8889999877665544
No 101
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.81 E-value=87 Score=26.23 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=47.1
Q ss_pred CCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEee-cccCCCCeEEEEeCccCc-hHH---HHHH
Q 030119 67 EARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHV-GAVESAERALVVDDLIAT-GGT---LCAA 141 (182)
Q Consensus 67 ~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gk~VLlVDDvitT-G~T---l~~~ 141 (182)
..+.-.+|..+|+.||+|.......+-..| +.+++. +.+ .|+.|+||-..... -.. +..+
T Consensus 15 ~~~~~~la~~ia~~lg~~l~~~~~~~FpdG--------------E~~v~i~~~v-~g~dV~ii~s~~~~~nd~l~eLll~ 79 (323)
T PRK02458 15 LNSNLEIAEKIAQAAGVPLGKLSSRQFSDG--------------EIMINIEESV-RGDDIYIIQSTSFPVNDHLWELLIM 79 (323)
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEECCCC--------------CEEEEecCCc-CCCeEEEEecCCCCCchHHHHHHHH
Confidence 345568999999999998876543222222 223332 455 88999998765322 222 3445
Q ss_pred HHHHHHcCCeEEEEEE
Q 030119 142 INLLERVGAEVVECAC 157 (182)
Q Consensus 142 ~~~L~~~Ga~~v~~~v 157 (182)
+++++++|++.+.+..
T Consensus 80 ~~alr~~~a~~i~lVi 95 (323)
T PRK02458 80 IDACKRASANTVNVVL 95 (323)
T ss_pred HHHHHHcCCceEEEEE
Confidence 6777899997654443
No 102
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=62.94 E-value=15 Score=29.74 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=59.6
Q ss_pred HHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEe-ecccCCCCe
Q 030119 48 IDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH-VGAVESAER 124 (182)
Q Consensus 48 ~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~ 124 (182)
+..+++.+... ..-++|+..+.|.|++..+-+.+..- .....-..++.+.-+++|.+..-+. .-.--+...
T Consensus 73 v~~la~~i~~~~g~~~vLVSLaRAGtPiGVLlkR~l~~~------~~g~~~~HYsISIIRdRGID~~AL~~I~~~H~~~~ 146 (257)
T PF11202_consen 73 VGVLAELIIARRGQPIVLVSLARAGTPIGVLLKRYLRRM------KYGLDLPHYSISIIRDRGIDENALRYILARHPPES 146 (257)
T ss_pred HHHHHHHHHHhcCCCeEEEEeeccCCcHHHHHHHHHHHh------hcCCCCCceeEEEecCCCCCHHHHHHHHHhCCCcc
Confidence 33444444322 44589999999999998887776320 0001111222222222222210000 001125678
Q ss_pred EEEEeCccCchHHHHHHHHHHHHc----CC-eEEEEEEEEee
Q 030119 125 ALVVDDLIATGGTLCAAINLLERV----GA-EVVECACVIEL 161 (182)
Q Consensus 125 VLlVDDvitTG~Tl~~~~~~L~~~----Ga-~~v~~~vl~~~ 161 (182)
|++||-+-..|.--.+..+.+++. |. -.-..+|+.|-
T Consensus 147 ivFVDGWTGKGaI~~eL~~al~~~~~~~~~~~~~~LaVLaDp 188 (257)
T PF11202_consen 147 IVFVDGWTGKGAITRELKKALAAFNARYGTRLSPDLAVLADP 188 (257)
T ss_pred eEEEecCccccHHHHHHHHHHHHHHhhcCCCCCCCeEEEecC
Confidence 999999999999988888888654 31 22345666654
No 103
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=60.35 E-value=75 Score=24.88 Aligned_cols=72 Identities=22% Similarity=0.437 Sum_probs=45.0
Q ss_pred EEEEeCCCchh---hHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchHH-
Q 030119 62 VVAGIEARGFI---FGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGGT- 137 (182)
Q Consensus 62 ~Iv~v~~~G~~---~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~T- 137 (182)
+|.|+-++|.. +|..|+ .+|.|..++...--.++. -+.+.+++-|+.+ -.||.|
T Consensus 43 ~V~G~GkSG~Igkk~Aa~L~-s~G~~a~fv~p~ea~hgd------------------lg~i~~~Dvviai---S~SGeT~ 100 (202)
T COG0794 43 FVTGVGKSGLIGKKFAARLA-STGTPAFFVGPAEALHGD------------------LGMITPGDVVIAI---SGSGETK 100 (202)
T ss_pred EEEcCChhHHHHHHHHHHHH-ccCCceEEecCchhccCC------------------ccCCCCCCEEEEE---eCCCcHH
Confidence 78889999963 454554 347787777522111111 1345455545553 456766
Q ss_pred -HHHHHHHHHHcCCeEEEE
Q 030119 138 -LCAAINLLERVGAEVVEC 155 (182)
Q Consensus 138 -l~~~~~~L~~~Ga~~v~~ 155 (182)
+..++..+++.|+.++++
T Consensus 101 el~~~~~~aK~~g~~liai 119 (202)
T COG0794 101 ELLNLAPKAKRLGAKLIAI 119 (202)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 888999999999987644
No 104
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=59.62 E-value=33 Score=28.51 Aligned_cols=45 Identities=24% Similarity=0.190 Sum_probs=39.8
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeec
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELP 162 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~ 162 (182)
+.+ .|++|+||--=-.......++.+.|+++|+.+.+...+-+..
T Consensus 79 g~L-~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~ 123 (308)
T PF11382_consen 79 GRL-TGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKF 123 (308)
T ss_pred Ccc-CCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhh
Confidence 456 999999998766778899999999999999999999998775
No 105
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=57.99 E-value=29 Score=24.80 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=31.8
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCc
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDL 164 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~ 164 (182)
+.+ ++++|+| +-+|++-+.++..|.+.|++.+ .+++|...
T Consensus 8 ~~l-~~~~vlv----iGaGg~ar~v~~~L~~~g~~~i---~i~nRt~~ 47 (135)
T PF01488_consen 8 GDL-KGKRVLV----IGAGGAARAVAAALAALGAKEI---TIVNRTPE 47 (135)
T ss_dssp STG-TTSEEEE----ESSSHHHHHHHHHHHHTTSSEE---EEEESSHH
T ss_pred CCc-CCCEEEE----ECCHHHHHHHHHHHHHcCCCEE---EEEECCHH
Confidence 355 8999998 5789999999999999999865 45666543
No 106
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=54.95 E-value=54 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCC
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVPLRKPK 92 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~ 92 (182)
-||+++-++.+.-.+|..=|..+|+|++-+.-..
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 4999999999998999999999999998876443
No 107
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=53.49 E-value=33 Score=21.92 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.8
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeE
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEV 152 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~ 152 (182)
..++++|++++ .+|.....+...|++.|-..
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCc
Confidence 44788899998 67888899999999999765
No 108
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=53.38 E-value=38 Score=21.32 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
.+++.|+++++- |.....++..|++.|-..+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v 78 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNV 78 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccE
Confidence 477889998887 7788889999999985543
No 109
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=53.02 E-value=18 Score=27.51 Aligned_cols=47 Identities=28% Similarity=0.332 Sum_probs=25.7
Q ss_pred CCCeEEEEeCccCchHHHHHHH-HHHHHcCCeEEEEEEEEeecCchhhccc
Q 030119 121 SAERALVVDDLIATGGTLCAAI-NLLERVGAEVVECACVIELPDLKGRERL 170 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~-~~L~~~Ga~~v~~~vl~~~~~~~~~~~l 170 (182)
.|.+ +||||++..+.-+..++ ++|. |..+..+-|.|+......||+.
T Consensus 82 aG~~-VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~ 129 (174)
T PF07931_consen 82 AGNN-VIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA 129 (174)
T ss_dssp TT-E-EEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH
T ss_pred CCCC-EEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh
Confidence 4554 57899999998777776 5564 4556566666654444444443
No 110
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=52.85 E-value=28 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.7
Q ss_pred CeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhccccCC-CeEEeeeeC
Q 030119 123 ERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLKGRERLNGK-PLYVLVESH 182 (182)
Q Consensus 123 k~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l~~~-~~~sl~~~~ 182 (182)
+.+||-|+.+.+-.-+...++.+++.|+++.-+-.-+ ...++|.++ .+-+|++|+
T Consensus 295 etLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~-----e~G~qL~~lgGiaAiLRy~ 350 (351)
T TIGR00111 295 EYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEH-----ELGKQLDSLGGIAGILRFP 350 (351)
T ss_pred eEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCC-----ccHHHHhhCCCEEEEEecc
Confidence 6789999997776668888888899999865333322 345567654 788888774
No 111
>PRK04940 hypothetical protein; Provisional
Probab=52.53 E-value=89 Score=23.98 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCHHHH-HHHHHHHHHHhcCC--CCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 39 LKPKEF-KDTIDMFVERYKGK--NISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 39 ~~~~~~-~~l~~~la~~~~~~--~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
..|... ..+-..+++..... +..++||..-|| .+|..||...|+|.+.+.
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGG-yyA~~La~~~g~~aVLiN 89 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGG-YWAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHH-HHHHHHHHHHCCCEEEEC
Confidence 456543 33434444333221 457999999999 689999999999998875
No 112
>PHA02774 E1; Provisional
Probab=50.59 E-value=1.5e+02 Score=27.27 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCch-hhHHHHHHHhCCCe-eeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCchH
Q 030119 59 NISVVAGIEARGF-IFGPPIALAIGAKF-VPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIATGG 136 (182)
Q Consensus 59 ~~d~Iv~v~~~G~-~~a~~la~~l~~p~-~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~ 136 (182)
.--++.|+|..|= .+|..|+..|+-.. .++-.+ ..+.+ ..+ .+.+|+|+||. |+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~------------------s~FwL--qpl-~d~ki~vlDD~--t~~ 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK------------------SHFWL--QPL-ADAKIALLDDA--THP 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc------------------ccccc--chh-ccCCEEEEecC--cch
Confidence 4457889998886 47888888885333 223211 11222 244 67889999999 555
Q ss_pred HHHHHHHHHHHc
Q 030119 137 TLCAAINLLERV 148 (182)
Q Consensus 137 Tl~~~~~~L~~~ 148 (182)
.-..+-..|++.
T Consensus 492 ~w~y~d~~Lrn~ 503 (613)
T PHA02774 492 CWDYIDTYLRNA 503 (613)
T ss_pred HHHHHHHHHHHH
Confidence 444455556544
No 113
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=50.42 E-value=62 Score=24.80 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 40 KPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 40 ~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
.|+..-.....+...... +..++||-..|| ..|..+|..+++|.+.+.
T Consensus 41 ~p~~a~~~l~~~i~~~~~-~~~~liGSSlGG-~~A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 41 FPEEAIAQLEQLIEELKP-ENVVLIGSSLGG-FYATYLAERYGLPAVLIN 88 (187)
T ss_pred CHHHHHHHHHHHHHhCCC-CCeEEEEEChHH-HHHHHHHHHhCCCEEEEc
Confidence 444443333333333322 225899999999 567789999999987763
No 114
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=49.78 E-value=40 Score=28.84 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCcEEEEeCCCc-hhhHHHHHHHhCCCeeeeecC
Q 030119 49 DMFVERYKGKNISVVAGIEARG-FIFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G-~~~a~~la~~l~~p~~~~~k~ 91 (182)
+.+.......++|+|+|+-.|- +-.|..+|..+++|++.+-..
T Consensus 74 ~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 74 ERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPTI 117 (360)
T ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecCc
Confidence 3444444334789999998554 358999999999999988544
No 115
>PRK12342 hypothetical protein; Provisional
Probab=48.43 E-value=40 Score=27.27 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEeC----CCchhhHHHHHHHhCCCeeeee
Q 030119 46 DTIDMFVERYKGKNISVVAGIE----ARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 46 ~l~~~la~~~~~~~~d~Iv~v~----~~G~~~a~~la~~l~~p~~~~~ 89 (182)
..+..|+..+++..+|+|++=. ...-..+..+|..||.|++..-
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v 143 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAV 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeE
Confidence 3456666666555699877543 2333678899999999987643
No 116
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=47.94 E-value=41 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
.++++|+++++ +|.....++..|+..|-..+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCE
Confidence 36788999985 67777888888899997533
No 117
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.74 E-value=49 Score=24.52 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCcEEEEeC-CCchhhHHHHHHHhCCCeee
Q 030119 46 DTIDMFVERYKGKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 46 ~l~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~~p~~~ 87 (182)
..+..++..+++.++++|+... ..|-.++..+|..||.|++.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 3455555555555688877665 56778999999999998865
No 118
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=47.09 E-value=42 Score=21.77 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.4
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
+.+++.|+++.. +|.+...+...|+..|-..+
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v 84 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTDV 84 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCceE
Confidence 447788999888 89999999999999997643
No 119
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=45.88 E-value=40 Score=27.35 Aligned_cols=43 Identities=5% Similarity=-0.029 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCcEEEEeC----CCchhhHHHHHHHhCCCeeee
Q 030119 46 DTIDMFVERYKGKNISVVAGIE----ARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 46 ~l~~~la~~~~~~~~d~Iv~v~----~~G~~~a~~la~~l~~p~~~~ 88 (182)
..+..|+..+++..+|+|++=. ...-..+..+|..||.|++..
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~ 145 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAING 145 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceee
Confidence 4466677766655799877543 333468889999999998754
No 120
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=44.86 E-value=48 Score=25.59 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCC----chhhHHHHHHHhCCCeee
Q 030119 47 TIDMFVERYKGKNISVVAGIEAR----GFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~----G~~~a~~la~~l~~p~~~ 87 (182)
.+..+++.++..++|+|+..... |-.++..+|..||.|++.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 34444444444468888877644 779999999999998754
No 121
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.40 E-value=71 Score=19.47 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=27.8
Q ss_pred eEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEe
Q 030119 124 RALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160 (182)
Q Consensus 124 ~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~ 160 (182)
+++|+.++ ||.-+..++..+++.|..+..-+++..
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~ 36 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTP 36 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECC
Confidence 46777777 788999999999999987666666653
No 122
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.00 E-value=79 Score=22.14 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=46.6
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccC---CCCeEEEEeCccCchHH
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVE---SAERALVVDDLIATGGT 137 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gk~VLlVDDvitTG~T 137 (182)
+++|++.-|= .++..+|+.++.|+..+.-..........-.+... ....+..++.+. ....|+++|++-..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCCHH
Confidence 5778887775 58999999999888776432211100000011111 111222223332 35679999999887777
Q ss_pred HHHHHHHHHHcC
Q 030119 138 LCAAINLLERVG 149 (182)
Q Consensus 138 l~~~~~~L~~~G 149 (182)
+.....-+.+.+
T Consensus 81 v~~~L~~ll~~~ 92 (139)
T PF07728_consen 81 VLESLLSLLEER 92 (139)
T ss_dssp HHHTTHHHHSSS
T ss_pred HHHHHHHHHhhC
Confidence 776666665543
No 123
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.54 E-value=65 Score=29.59 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCchhh-HHHHHHHhCC--Ceeee
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGFIF-GPPIALAIGA--KFVPL 88 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~~--p~~~~ 88 (182)
+.+.+.+.+...++|++|.++.-||++ -+..++..|+ |+++.
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyY 342 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHY 342 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 344555666666999999999999985 3345566785 77653
No 124
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.53 E-value=80 Score=26.43 Aligned_cols=43 Identities=5% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeec
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k 90 (182)
+....+..+..++|+||++-.|.. -.|..+|..+++|++.+-.
T Consensus 67 v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 67 VERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPT 110 (345)
T ss_pred HHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecC
Confidence 344455555568999999986554 4788888888999988754
No 125
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=40.60 E-value=2.4e+02 Score=24.33 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=26.3
Q ss_pred cccCCCCeEEEEeCccC---------------chHHHH---HHHHHHHHcCCeEEEEEEE
Q 030119 117 GAVESAERALVVDDLIA---------------TGGTLC---AAINLLERVGAEVVECACV 158 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvit---------------TG~Tl~---~~~~~L~~~Ga~~v~~~vl 158 (182)
+.+ .|+.|+||-.... .-..+. -++++++ +||+.+.+..-
T Consensus 73 ~~V-rg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 73 ESV-RGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred CCC-CCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 455 8999999998642 122233 3778888 99876654433
No 126
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=40.26 E-value=94 Score=22.49 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCC
Q 030119 39 LKPKEFKDTIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAK 84 (182)
Q Consensus 39 ~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p 84 (182)
.+++....+++.|+..++...+-++.|....|= .++..+++.++.+
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 477888899999998886555556667776664 6899999999863
No 127
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=39.81 E-value=62 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCcEEEEeC-CCchhhHHHHHHHhCCCeee
Q 030119 47 TIDMFVERYKGKNISVVAGIE-ARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~~p~~~ 87 (182)
.+..++..+++.++++|+... ..|-.++..+|..||.|++.
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 344555555444688777654 56778999999999998865
No 128
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.08 E-value=72 Score=29.14 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCC----Cc-EEEEeCCCc-hhhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCC
Q 030119 48 IDMFVERYKGKN----IS-VVAGIEARG-FIFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVES 121 (182)
Q Consensus 48 ~~~la~~~~~~~----~d-~Iv~v~~~G-~~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (182)
+..+.++.++.+ +. ++-|++..| -.+|+.+|..-+.|++-+......-|-+-+. .-.+-.+.| .+....
T Consensus 523 G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsa--Kc~~i~k~F---~DAYkS 597 (744)
T KOG0741|consen 523 GKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESA--KCAHIKKIF---EDAYKS 597 (744)
T ss_pred HHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHH--HHHHHHHHH---HHhhcC
Confidence 556666665541 22 344667666 4699999999999999876433221111000 000001112 144456
Q ss_pred CCeEEEEeCccC-----------chHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 122 AERALVVDDLIA-----------TGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 122 gk~VLlVDDvit-----------TG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.-.|++|||+=+ |-..+.+..=+|++...+--..+++.
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~ 646 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFG 646 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEe
Confidence 678999998743 33445555555566555433344444
No 129
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=37.99 E-value=82 Score=20.70 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.0
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCe
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAE 151 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~ 151 (182)
+.+++.|+++ ..+|.....++..|++.|-.
T Consensus 58 ~~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 58 LPDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 3467778886 66888888999999999976
No 130
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=37.58 E-value=96 Score=20.86 Aligned_cols=26 Identities=42% Similarity=0.405 Sum_probs=17.7
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcC
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVG 149 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~G 149 (182)
.+.+||+||| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5678999999 3344555556666667
No 131
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=37.55 E-value=84 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHhcCCCCcEEEEeCCCchhhHH-HHHHHhCCCeeee
Q 030119 52 VERYKGKNISVVAGIEARGFIFGP-PIALAIGAKFVPL 88 (182)
Q Consensus 52 a~~~~~~~~d~Iv~v~~~G~~~a~-~la~~l~~p~~~~ 88 (182)
.+.+++.++|+|+++..-|+++.. .-|+.+|+|+++.
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 344555689999999987877432 3456779999875
No 132
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=37.33 E-value=34 Score=25.17 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEeC-CCchhhHHHHHHHhCCCeeee
Q 030119 47 TIDMFVERYKGKNISVVAGIE-ARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~-~~G~~~a~~la~~l~~p~~~~ 88 (182)
.+..+++.+++.++|+|+... ..|-.++..+|..|+.|++.-
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccce
Confidence 344444444444678776655 566679999999999998763
No 133
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=37.07 E-value=74 Score=20.76 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=24.1
Q ss_pred CeEEEEeCccCchHHHHHHHHHHHHc-C-CeEEEEEE
Q 030119 123 ERALVVDDLIATGGTLCAAINLLERV-G-AEVVECAC 157 (182)
Q Consensus 123 k~VLlVDDvitTG~Tl~~~~~~L~~~-G-a~~v~~~v 157 (182)
..+.+++|...+=.++.++++.+++. + .+.+.++-
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 34777777999999999999999887 3 44444443
No 134
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=35.42 E-value=65 Score=22.50 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=35.3
Q ss_pred CeEEEEeCccCchHH-----------------HHHHHHHHHHcCCeEEEEEEEEeecCchhhccc-cCC-CeEEeeeeC
Q 030119 123 ERALVVDDLIATGGT-----------------LCAAINLLERVGAEVVECACVIELPDLKGRERL-NGK-PLYVLVESH 182 (182)
Q Consensus 123 k~VLlVDDvitTG~T-----------------l~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~~l-~~~-~~~sl~~~~ 182 (182)
+++||-||...++.+ +..+.+..++.|+++.- +-+ .....++| .++ .+-+|++|+
T Consensus 39 ~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~i---is~--~~e~G~~L~~~~gGIaaiLRy~ 112 (113)
T PF03465_consen 39 ETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEI---ISS--EHEEGEQLLKGFGGIAAILRYP 112 (113)
T ss_dssp EEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEE---E-T--TSHHHHHHHHCTTTEEEEESS-
T ss_pred cEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEE---EcC--CCccHHHHHhcCCcEEEEEecc
Confidence 568888888888754 67777788889987542 222 22344556 553 677777663
No 135
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=34.98 E-value=2.8e+02 Score=23.39 Aligned_cols=83 Identities=8% Similarity=-0.017 Sum_probs=49.0
Q ss_pred EEEEeCCCchhhHHHHHHHh-CCCeeeeecCCCCCCcccchheeeccccceEEEe-ecccCCCCeEEEEeCccCchHH--
Q 030119 62 VVAGIEARGFIFGPPIALAI-GAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMH-VGAVESAERALVVDDLIATGGT-- 137 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gk~VLlVDDvitTG~T-- 137 (182)
.|++- .+.-.+|..+|+.+ |+|......++-..|+ .++.+. .+.+ .|++|+||=-.... .-
T Consensus 18 ~i~~g-~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE------------~~v~v~~~~~v-rg~~V~ivqs~~~p-d~lm 82 (326)
T PLN02297 18 HLFYC-EETEELARKIAAESDAIELGSINWRKFPDGF------------PNLFINNAHGI-RGQHVAFLASFSSP-AVIF 82 (326)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCCceeeeEEEECCCCC------------EEEEEcCCCCc-CCCeEEEECCCCCC-hHHH
Confidence 34443 45568999999986 7888776543222221 122332 2455 89999998764433 22
Q ss_pred -HHHHHHHHHHcCCeEEEEEEEE
Q 030119 138 -LCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 138 -l~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+--+++.++++|++.+.+..-.
T Consensus 83 ELLl~~dAlr~~ga~~i~~ViPY 105 (326)
T PLN02297 83 EQLSVIYALPKLFVASFTLVLPF 105 (326)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeC
Confidence 2334566788899866554433
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=33.98 E-value=97 Score=26.89 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHhcCC----CCcEEEEeCCCch-hhHHHHHHHhC--CCeeee
Q 030119 40 KPKEFKDTIDMFVERYKGK----NISVVAGIEARGF-IFGPPIALAIG--AKFVPL 88 (182)
Q Consensus 40 ~~~~~~~l~~~la~~~~~~----~~d~Iv~v~~~G~-~~a~~la~~l~--~p~~~~ 88 (182)
-....+..+-.+.+.++.. .--+++|+|..|- .+|..+|+.|| +||+.+
T Consensus 43 GQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 43 GQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred chHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 3445566666666666543 3447889987774 69999999997 688765
No 137
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.26 E-value=1.1e+02 Score=22.55 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=27.2
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
+||+|+|+-|- -|---.++.+.++..|+.++.+.+=|
T Consensus 4 ~gkKviiiGdR--DGiPgpAie~c~~~~gaevvfs~TeC 40 (150)
T PF04723_consen 4 EGKKVIIIGDR--DGIPGPAIEECVKTAGAEVVFSSTEC 40 (150)
T ss_pred CCcEEEEEecC--CCCCcHHHHHHHHhcCceEEEEeeeE
Confidence 78999999874 45555666677788899987766544
No 138
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=32.99 E-value=1.1e+02 Score=20.13 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=23.3
Q ss_pred CCCCeEEEEeCccCchHHHHHHHHHHHHcCCeE
Q 030119 120 ESAERALVVDDLIATGGTLCAAINLLERVGAEV 152 (182)
Q Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~ 152 (182)
.++++|+++.+ +|..-..++..|++.|-+.
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~ 88 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKN 88 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcc
Confidence 46788999875 6777777888899999753
No 139
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=32.80 E-value=84 Score=27.08 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=20.2
Q ss_pred EEEeCccCchHHHHHHHHHHHHcCC
Q 030119 126 LVVDDLIATGGTLCAAINLLERVGA 150 (182)
Q Consensus 126 LlVDDvitTG~Tl~~~~~~L~~~Ga 150 (182)
|+|||.+.+-..-.++++.|+..|+
T Consensus 151 lVV~d~~e~~~KTK~av~~Lk~lg~ 175 (381)
T PTZ00428 151 LVVSDSVESYEKTKEAVAFLKALGA 175 (381)
T ss_pred EEEEcCcCCCCCHHHHHHHHHHcCC
Confidence 7788888775566788899999886
No 140
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=32.67 E-value=1.3e+02 Score=25.75 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCchhh-HHHHHHHhCCC--eee
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGFIF-GPPIALAIGAK--FVP 87 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~~p--~~~ 87 (182)
+.+.+.+.+...++|++|.++.-||++ -+..++..|.| +++
T Consensus 70 ~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viy 113 (373)
T PF02684_consen 70 LFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIY 113 (373)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEE
Confidence 334555566666999999999999974 22344556766 554
No 141
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=54 Score=27.96 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.6
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
+++||..+|- .+|..||+.|++|+.+..
T Consensus 101 LLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 101 LLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 6778877774 689999999999998874
No 142
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=32.07 E-value=3.1e+02 Score=23.12 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=34.2
Q ss_pred EecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHh-CCCeeeee
Q 030119 32 QDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAI-GAKFVPLR 89 (182)
Q Consensus 32 ~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l-~~p~~~~~ 89 (182)
++..+-..++.....+ ++++....+|+|+++.. +.|..+..+. ++|+++.-
T Consensus 65 i~~~na~~~~~~a~~i----arql~~~~~dviv~i~t---p~Aq~~~s~~~~iPVV~aa 116 (322)
T COG2984 65 IDYQNAQGDLGTAAQI----ARQLVGDKPDVIVAIAT---PAAQALVSATKTIPVVFAA 116 (322)
T ss_pred EEeecCCCChHHHHHH----HHHhhcCCCcEEEecCC---HHHHHHHHhcCCCCEEEEc
Confidence 3555556676665554 55555667899998764 6677766665 68999864
No 143
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.01 E-value=1.4e+02 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHh
Q 030119 49 DMFVERYKGKNISVVAGIEARGF-IFGPPIALAI 81 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l 81 (182)
..+...++..++|+||++-.|.. -.|..+|..+
T Consensus 70 ~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 70 DAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred HHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 34444455557899999986554 4777777666
No 144
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=31.62 E-value=19 Score=20.87 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred CccCchHHHHHHHHHHHHc
Q 030119 130 DLIATGGTLCAAINLLERV 148 (182)
Q Consensus 130 DvitTG~Tl~~~~~~L~~~ 148 (182)
.++|.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5679999999999988764
No 145
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=31.58 E-value=1.6e+02 Score=28.37 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=23.2
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVE 154 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~ 154 (182)
.|.+|||+||--.. ...+...|++.|+.++.
T Consensus 688 ~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~ 718 (894)
T PRK10618 688 DGVTVLLDITSEEV---RKIVTRQLENWGATCIT 718 (894)
T ss_pred CCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEE
Confidence 68899999998765 44455678888988653
No 146
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=31.52 E-value=1.6e+02 Score=24.00 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCCchhh-HHHHHHHhCCCeeee
Q 030119 46 DTIDMFVERYKGKNISVVAGIEARGFIF-GPPIALAIGAKFVPL 88 (182)
Q Consensus 46 ~l~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~~p~~~~ 88 (182)
.+...+...+...++|+|+........+ +...|..+++|++..
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3445555566666899999886544444 455666779998864
No 147
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.45 E-value=1.3e+02 Score=25.18 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 49 DMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
+.+...+++.++|+||++-.|.. -.|..+|..+++|++.+-..
T Consensus 66 ~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 66 ERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCc
Confidence 33444454557899999986554 47888888889999887543
No 148
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.39 E-value=2.4e+02 Score=21.69 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeeecCCC---CCCcccch-heeeccccceEEEe-
Q 030119 41 PKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKK---LPGKVISE-EYILEYGRDCLEMH- 115 (182)
Q Consensus 41 ~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~k~~~---~~~~~~~~-~~~~~~~~~~~~~~- 115 (182)
++.+..+++.+++.+.+.+-=.++|.-.+| ..|..++..|..++...|...+ ........ ....+.+-..+...
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa-~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~q 102 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSA-ANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ 102 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHH-HHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHH
Confidence 356778888888887655433666766544 5677777655322211110000 00000000 00000000000000
Q ss_pred -ecccCCCCeEEEEeCccCchHH--HHHHHHHHHHcCCeEEEEE
Q 030119 116 -VGAVESAERALVVDDLIATGGT--LCAAINLLERVGAEVVECA 156 (182)
Q Consensus 116 -~~~~~~gk~VLlVDDvitTG~T--l~~~~~~L~~~Ga~~v~~~ 156 (182)
.....+| .|+|+ +-.||.| +..+++..++.|++++...
T Consensus 103 l~~~~~~g-Dvli~--iS~SG~s~~v~~a~~~Ak~~G~~vI~IT 143 (196)
T PRK10886 103 VRALGHAG-DVLLA--ISTRGNSRDIVKAVEAAVTRDMTIVALT 143 (196)
T ss_pred HHHcCCCC-CEEEE--EeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 0123244 45555 5556655 8888999999999866433
No 149
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=31.31 E-value=57 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 51 FVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 51 la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
+...+...++|+|+++-.|-+ -++...|..+++|++.+-..
T Consensus 67 ~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isVPTa 108 (250)
T PF13685_consen 67 LVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISVPTA 108 (250)
T ss_dssp HHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEEES-
T ss_pred HHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEeccc
Confidence 344444447889999975554 49999999999999988644
No 150
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=31.18 E-value=22 Score=27.93 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=10.5
Q ss_pred EeCccCchHHHHH
Q 030119 128 VDDLIATGGTLCA 140 (182)
Q Consensus 128 VDDvitTG~Tl~~ 140 (182)
|=|++.||+|+++
T Consensus 148 IvDiv~TG~TLr~ 160 (204)
T PRK13584 148 IVDIVQTGTTLKA 160 (204)
T ss_pred EEEEECccHHHHH
Confidence 3389999999864
No 151
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=31.11 E-value=1.7e+02 Score=24.18 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCCchhh-HHHHHHHhCCCeeee
Q 030119 46 DTIDMFVERYKGKNISVVAGIEARGFIF-GPPIALAIGAKFVPL 88 (182)
Q Consensus 46 ~l~~~la~~~~~~~~d~Iv~v~~~G~~~-a~~la~~l~~p~~~~ 88 (182)
.....+++.+...++|+|+.-..+...+ +...|..+++|++.+
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 3334566666667899999886544444 566677789999865
No 152
>PLN02199 shikimate kinase
Probab=30.68 E-value=1.4e+02 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 40 KPKEFKDTIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 40 ~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
+.+.++..++.++..+.+.. =+++|.+..|= .++..||..+|.|++...
T Consensus 85 de~~Lk~~a~~i~~~l~~~~-I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 85 DEDILKRKAEEVKPYLNGRS-MYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CHHHHHHHHHHHHHHcCCCE-EEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 44557777777776665433 37788887774 699999999999998753
No 153
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=30.59 E-value=1.4e+02 Score=24.88 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
.....++.+++.++|.||++-.|.. -.|..+|..+++|++.+-..
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEEcCC
Confidence 4455556665568999999986554 47888888789999887543
No 154
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=30.21 E-value=59 Score=21.00 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=20.3
Q ss_pred cEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 61 SVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 61 d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
--|+.-..+-..+++.+|+.+|+|++...
T Consensus 32 ~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 32 AGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp SEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred EEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 34444444445799999999999999865
No 155
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=30.09 E-value=83 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=22.4
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPL 88 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~ 88 (182)
+|.|++..|= .+|..||+.+|.+++..
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 5788998885 59999999999987654
No 156
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=30.04 E-value=1.4e+02 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
+..+.+.+.+.++|+||++-.|.. -.|..+|...++|++.+-..
T Consensus 67 v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 67 VEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred HHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEecCc
Confidence 344445555557899999985543 47888888889999887543
No 157
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.66 E-value=2.1e+02 Score=21.86 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCch--------hhHHHHHHHhCCCeeee
Q 030119 59 NISVVAGIEARGF--------IFGPPIALAIGAKFVPL 88 (182)
Q Consensus 59 ~~d~Iv~v~~~G~--------~~a~~la~~l~~p~~~~ 88 (182)
+||+|++-...-. ..|.+||+.+|+|+...
T Consensus 124 ~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 7898876543332 47899999999998763
No 158
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=29.65 E-value=1.8e+02 Score=24.31 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=23.2
Q ss_pred hcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeee
Q 030119 55 YKGKNISVVAGIEARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 55 ~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~ 88 (182)
+...++|+||.-. ....+..+|+.+|+|++..
T Consensus 88 ~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 88 YKGDRPDLIVYDI--ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred hcCCCCCEEEECC--ccHHHHHHHHHhCCCEEEE
Confidence 3344789987644 3457888999999998754
No 159
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=28.90 E-value=26 Score=26.42 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=9.5
Q ss_pred CccCchHHHHH
Q 030119 130 DLIATGGTLCA 140 (182)
Q Consensus 130 DvitTG~Tl~~ 140 (182)
|++.||+||++
T Consensus 112 Div~TG~TLr~ 122 (163)
T PF01634_consen 112 DIVETGTTLRA 122 (163)
T ss_dssp EEESSSHHHHH
T ss_pred EeccCcHHHHH
Confidence 89999999864
No 160
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.89 E-value=81 Score=18.77 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHcCCeEE
Q 030119 133 ATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 133 tTG~Tl~~~~~~L~~~Ga~~v 153 (182)
.+=+|+..+++.|++.||..+
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEe
Confidence 345799999999999998653
No 161
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=28.73 E-value=3.2e+02 Score=22.99 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecCCCCCCcccchheeeccccceEEEeecccCCCCeEE
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKPKKLPGKVISEEYILEYGRDCLEMHVGAVESAERAL 126 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VL 126 (182)
.+.++..+. ..+-.|+|+..++. ..+..++..+++|.+....... ....+.....+.....-..+ ...+ .-+++.
T Consensus 53 ~~~~C~~~~-~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~-~~~~f~i~~~p~~~~a~~~~-i~~~-~wk~va 128 (371)
T cd06388 53 TNAFCSQYS-RGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPSLRGALLSL-LDHY-EWNRFV 128 (371)
T ss_pred HHHHHHHHh-CCceEEEecCCHHHHHHHHHHhhCCCCCeeecCcccc-CCCceEEEeChhhhhHHHHH-HHhc-CceEEE
Confidence 344454553 35779999987664 5778999999999987532210 00011001111110000000 0122 446666
Q ss_pred EEeCccCchHHHHHHHHHHHHcCCeEEE
Q 030119 127 VVDDLIATGGTLCAAINLLERVGAEVVE 154 (182)
Q Consensus 127 lVDDvitTG~Tl~~~~~~L~~~Ga~~v~ 154 (182)
++-|.-.-=+.+.+..+.+++.|.+++.
T Consensus 129 iiYd~~~~~~~lq~l~~~~~~~g~~v~~ 156 (371)
T cd06388 129 FLYDTDRGYSILQAIMEKAGQNGWQVSA 156 (371)
T ss_pred EEecCCccHHHHHHHHHhhHhcCCeeee
Confidence 6654333224477777877888877654
No 162
>COG1647 Esterase/lipase [General function prediction only]
Probab=28.57 E-value=2e+02 Score=23.16 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=42.2
Q ss_pred CCCchHHHHHHhhcccc------CCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCc--EEEEeCCCchhhHH
Q 030119 4 YKDKDARINGIKDQIRV------VPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNIS--VVAGIEARGFIFGP 75 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~r~------~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d--~Iv~v~~~G~~~a~ 75 (182)
|.-+-.+.+.|.+-++. .|.+|.+|..--|. +...|+..=.-+..--+.+.+...| .|+|+..|| .+|.
T Consensus 24 FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~f--l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGG-v~al 100 (243)
T COG1647 24 FTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDF--LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSMGG-VFAL 100 (243)
T ss_pred cCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHH--hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecchh-HHHH
Confidence 44556677777776654 37777776311111 1223322111111112233323223 789999999 7888
Q ss_pred HHHHHhCCC
Q 030119 76 PIALAIGAK 84 (182)
Q Consensus 76 ~la~~l~~p 84 (182)
.||..+..+
T Consensus 101 kla~~~p~K 109 (243)
T COG1647 101 KLAYHYPPK 109 (243)
T ss_pred HHHhhCCcc
Confidence 999888754
No 163
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=28.36 E-value=27 Score=27.57 Aligned_cols=13 Identities=46% Similarity=0.693 Sum_probs=10.4
Q ss_pred EeCccCchHHHHH
Q 030119 128 VDDLIATGGTLCA 140 (182)
Q Consensus 128 VDDvitTG~Tl~~ 140 (182)
|=|++.||+|+++
T Consensus 158 IvDivsTG~TLr~ 170 (215)
T PRK01686 158 IVDIVETGNTLRA 170 (215)
T ss_pred EEEeecChHHHHH
Confidence 3389999999864
No 164
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=28.30 E-value=1.3e+02 Score=24.53 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecC
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
++++|+|+ -+|++-++++..|.+.|+..+. +++|..
T Consensus 124 ~~k~vlvl----GaGGaarai~~aL~~~G~~~i~---I~nRt~ 159 (282)
T TIGR01809 124 AGFRGLVI----GAGGTSRAAVYALASLGVTDIT---VINRNP 159 (282)
T ss_pred CCceEEEE----cCcHHHHHHHHHHHHcCCCeEE---EEeCCH
Confidence 68889864 8899999999999999987543 446643
No 165
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=28.30 E-value=1.4e+02 Score=24.55 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHh--CCCeeeeecC
Q 030119 49 DMFVERYKGKNISVVAGIEARGF-IFGPPIALAI--GAKFVPLRKP 91 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l--~~p~~~~~k~ 91 (182)
..+...+.+.++|+||++-.|.. -.|..+|..+ ++|++.+-..
T Consensus 68 ~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 68 KEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 33444444457899999986554 4777888777 8999887543
No 166
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=28.30 E-value=3.3e+02 Score=22.17 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhH-HHHHHHhCCCeeee
Q 030119 37 LLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFG-PPIALAIGAKFVPL 88 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a-~~la~~l~~p~~~~ 88 (182)
--.+|+.....++.|.. +.++++|+|....+...+ ..++...++|++..
T Consensus 48 ~~~~p~~a~~~~~~Li~---~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (334)
T cd06356 48 TQSDNERYQQYAQRLAL---QDKVDVVWGGISSASREAIRPIMDRTKQLYFYT 97 (334)
T ss_pred CCCCHHHHHHHHHHHHH---hCCCCEEEeCcchHHHHHHHHHHHhcCceEEeC
Confidence 34678887777777653 347899999887776433 55777889998863
No 167
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=28.24 E-value=1.3e+02 Score=25.22 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
+....+.+++.++|+||++-.|.. -.|..+|..+++|++.+-..
T Consensus 66 v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 66 VVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEeCCc
Confidence 344455555557899999986554 47888888889999887543
No 168
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=28.10 E-value=53 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.6
Q ss_pred CCchhhHHHHHHHhCCCeee
Q 030119 68 ARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 68 ~~G~~~a~~la~~l~~p~~~ 87 (182)
.||-.+|..||+.||.|+..
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE-
T ss_pred CChHHHHHHHHHHcCCccCC
Confidence 68889999999999999965
No 169
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=28.07 E-value=1.6e+02 Score=18.94 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=23.0
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCC
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGA 150 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga 150 (182)
+.++++|+++.+ +|.....+...|++.|.
T Consensus 48 ~~~~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 48 LPKDKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred cCCCCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 446778888865 58788888889999987
No 170
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.91 E-value=1.6e+02 Score=24.83 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeec
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k 90 (182)
.+...++.+++.++|+||++-.|.. -.|..+|..+++|++.+-.
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCC
Confidence 4455556665668899999986554 4788888888999988754
No 171
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=27.58 E-value=1.2e+02 Score=26.29 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEeCccCchHHHHHHHHHHHHcCC
Q 030119 126 LVVDDLIATGGTLCAAINLLERVGA 150 (182)
Q Consensus 126 LlVDDvitTG~Tl~~~~~~L~~~Ga 150 (182)
|||||.+.+-..-.++++.|+..|+
T Consensus 156 LVV~d~~e~~~KTK~av~~Lk~lg~ 180 (405)
T PLN00185 156 LVVSDSAESIEKTSAAIKILKQIGA 180 (405)
T ss_pred EEEEeCccCCcCHHHHHHHHHHcCC
Confidence 6777777666667789999999987
No 172
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=27.48 E-value=99 Score=27.87 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 44 FKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 44 ~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
...+.+.+...+. ..||+|+|-=..|=..|..||..||+|.+++-
T Consensus 387 a~d~~~~i~~e~~-~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 387 ADDAEREILAELQ-GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp HHHHHHHHHHHHT-S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred HHHHHHHHHHHhC-CCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 3344444444443 36899999877777899999999999998863
No 173
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=27.45 E-value=1.5e+02 Score=18.67 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=30.3
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCC
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGA 150 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga 150 (182)
+..|++|+=|++.-.++.|..++.+.++..+.
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 77899999999999999999999999999976
No 174
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=27.42 E-value=1.9e+02 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
..+.+.+.+...++|+||+= ..+++...|+..++|++.+.
T Consensus 82 ~~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i~ 121 (318)
T PF13528_consen 82 RIRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVIS 121 (318)
T ss_pred HHHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEEE
Confidence 33445556666689999975 34667788899999998653
No 175
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.40 E-value=1.6e+02 Score=24.53 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeec
Q 030119 47 TIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 47 l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k 90 (182)
.+....+.+++.++|+||++-.|.. -.|..+|..+++|++.+-.
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 65 EIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred HHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCC
Confidence 3455555666668999999986654 4788888888999988754
No 176
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=55 Score=28.85 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=57.8
Q ss_pred ccCC-CCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCC-----------CCcEEEEeCCCch-hhHHHHHHHhCCCe
Q 030119 19 RVVP-NFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGK-----------NISVVAGIEARGF-IFGPPIALAIGAKF 85 (182)
Q Consensus 19 r~~~-~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~-----------~~d~Iv~v~~~G~-~~a~~la~~l~~p~ 85 (182)
+|.+ +|+.|. ...++..+|+.-+.+.+.|..-+++. .==++-|||..|= .+-+++|-+|+-.+
T Consensus 188 ~W~~v~f~Hps----tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydI 263 (457)
T KOG0743|consen 188 EWRSVGFPHPS----TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDI 263 (457)
T ss_pred cceecCCCCCC----CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCce
Confidence 4443 455553 35667889988888888876654332 1126678887774 47778999988766
Q ss_pred eeeecC-CCCCCcccchheeeccccceEEEeecccCCCCeEEEEeCccCc
Q 030119 86 VPLRKP-KKLPGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIAT 134 (182)
Q Consensus 86 ~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitT 134 (182)
..+.-. .+..... +++- -. .+++.||||+||=.+
T Consensus 264 ydLeLt~v~~n~dL-----------r~LL---~~-t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 264 YDLELTEVKLDSDL-----------RHLL---LA-TPNKSILLIEDIDCS 298 (457)
T ss_pred EEeeeccccCcHHH-----------HHHH---Hh-CCCCcEEEEeecccc
Confidence 554311 1100000 0110 12 388999999998665
No 177
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=27.01 E-value=29 Score=27.70 Aligned_cols=11 Identities=55% Similarity=0.697 Sum_probs=9.7
Q ss_pred CccCchHHHHH
Q 030119 130 DLIATGGTLCA 140 (182)
Q Consensus 130 DvitTG~Tl~~ 140 (182)
|++.||+|+++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999865
No 178
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=26.87 E-value=1.5e+02 Score=23.93 Aligned_cols=38 Identities=13% Similarity=-0.103 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 50 MFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 50 ~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
.+.+.+++.++|+|++.......++...++.+++|++.
T Consensus 81 ~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 81 QARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 44555666689999987644334455567778889875
No 179
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=26.62 E-value=1.2e+02 Score=19.73 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCeEEEEeCccCchHH--HHHHHHHHHHcCCeEEE
Q 030119 121 SAERALVVDDLIATGGT--LCAAINLLERVGAEVVE 154 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~T--l~~~~~~L~~~Ga~~v~ 154 (182)
++++|+|+.+ +|.. ...++..|++.|-+.+.
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEE
Confidence 3677888865 5543 57778889999976554
No 180
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=26.29 E-value=1.4e+02 Score=23.88 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCcEEEEeCCCchh-hHHHHHHHh---CCCeeeee
Q 030119 49 DMFVERYKGKNISVVAGIEARGFI-FGPPIALAI---GAKFVPLR 89 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G~~-~a~~la~~l---~~p~~~~~ 89 (182)
..+++.+...+--++.|.+..|-. +|.+++..+ |+++.++.
T Consensus 96 ~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 96 ASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred HHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444555554344588899987853 555555554 66666654
No 181
>PRK13947 shikimate kinase; Provisional
Probab=26.07 E-value=86 Score=22.82 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.2
Q ss_pred EEEEeCCCc-hhhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARG-FIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G-~~~a~~la~~l~~p~~~~~ 89 (182)
+++|++..| -.+|..||..||.|++...
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 567877555 5799999999999997653
No 182
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=25.56 E-value=1.7e+02 Score=19.20 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
++++|+++.+ +|.....++..|.+.|-..+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v 86 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENV 86 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccE
Confidence 5788999875 58778888889998987643
No 183
>PRK10646 ADP-binding protein; Provisional
Probab=25.37 E-value=2.2e+02 Score=21.12 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=33.7
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCc-hhhHHHHHHHhCCC
Q 030119 37 LLLKPKEFKDTIDMFVERYKGKNISVVAGIEARG-FIFGPPIALAIGAK 84 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G-~~~a~~la~~l~~p 84 (182)
.+.+++..+.+++.|+..++...+=++-|--..| -.++..+++.||++
T Consensus 7 ~~~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 7 PLPDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred ECCCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3568899999999999888643322233333334 46999999999873
No 184
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=25.31 E-value=3.5e+02 Score=22.03 Aligned_cols=56 Identities=11% Similarity=-0.011 Sum_probs=35.7
Q ss_pred ccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeC----------------CCch----hhHHHHHHHhCCCeeeeec
Q 030119 35 TTLLLKPKEFKDTIDMFVERYKGKNISVVAGIE----------------ARGF----IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 35 ~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~----------------~~G~----~~a~~la~~l~~p~~~~~k 90 (182)
+.-..+.+-++++-+-+-+.+.+..+|+||--+ ..|+ .+.-...+.+++|+++...
T Consensus 224 ~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltS 299 (324)
T KOG1344|consen 224 RNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTS 299 (324)
T ss_pred ecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEec
Confidence 333445556666666666666666788877432 3333 2556678889999999863
No 185
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=25.24 E-value=1.2e+02 Score=25.07 Aligned_cols=38 Identities=5% Similarity=-0.152 Sum_probs=27.8
Q ss_pred HHHHhcCCCCcEEEEeCCCch----hhHHHHHHHhCCCeeee
Q 030119 51 FVERYKGKNISVVAGIEARGF----IFGPPIALAIGAKFVPL 88 (182)
Q Consensus 51 la~~~~~~~~d~Iv~v~~~G~----~~a~~la~~l~~p~~~~ 88 (182)
+++.+....+.+|+|+...+. .....++..+++|++..
T Consensus 55 ~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 55 VCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred HHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 333343336788999988775 66788899999999864
No 186
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.07 E-value=1.2e+02 Score=18.69 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHcCCeEEEEE
Q 030119 134 TGGTLCAAINLLERVGAEVVECA 156 (182)
Q Consensus 134 TG~Tl~~~~~~L~~~Ga~~v~~~ 156 (182)
..+++.++.+.+.+.|+.++++.
T Consensus 9 ~pG~L~~l~~~i~~~g~nI~~i~ 31 (72)
T cd04884 9 KPGTLKPVVDTLREFNARIISIL 31 (72)
T ss_pred CCccHHHHHHHHHHCCCeEEEEE
Confidence 46679999999999999988775
No 187
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=25.04 E-value=2.2e+02 Score=24.76 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHhcCC----CCcEEEEeCCCch-hhHHHHHHHhC--CCeeeee
Q 030119 40 KPKEFKDTIDMFVERYKGK----NISVVAGIEARGF-IFGPPIALAIG--AKFVPLR 89 (182)
Q Consensus 40 ~~~~~~~l~~~la~~~~~~----~~d~Iv~v~~~G~-~~a~~la~~l~--~p~~~~~ 89 (182)
-....+..+-.+.+.++.. ..=+++|+|..|= .+|.++|+.|| +||+.+-
T Consensus 28 GQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 28 GQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp S-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred ChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 4455667777777777654 3347889998774 69999999997 7998764
No 188
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=24.87 E-value=1.8e+02 Score=24.42 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeeecC
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLRKP 91 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~ 91 (182)
...+.+.+.+.+.|+||++-.|.. -.|..+|...++|++.+-..
T Consensus 76 v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred HHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCC
Confidence 344555555557899999985544 47778887789999887543
No 189
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=24.84 E-value=3.9e+02 Score=22.13 Aligned_cols=100 Identities=9% Similarity=0.075 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCchh-hHHHHHHHhCCCeeeeecCCC-CC-CcccchheeeccccceEEEeecccCCCCe
Q 030119 48 IDMFVERYKGKNISVVAGIEARGFI-FGPPIALAIGAKFVPLRKPKK-LP-GKVISEEYILEYGRDCLEMHVGAVESAER 124 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~~-~a~~la~~l~~p~~~~~k~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 124 (182)
++.+++.+. ..+.+|+|+..++.. .+..++..+++|++....... .. ...+.......+......+ ...+ .-++
T Consensus 52 ~~~~c~ll~-~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~~fr~~p~~~~a~~~~-~~~~-~wk~ 128 (382)
T cd06380 52 TNAICSQLS-RGVFAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVLQMRPSLIQALVDL-IEHY-GWRK 128 (382)
T ss_pred HHHHHHHHh-cCcEEEEecCcHHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcEEEEeccchhHHHHHH-HHhc-CCeE
Confidence 444555553 368899999876644 456678889999987532211 00 0000000001110000000 0122 3466
Q ss_pred EEEEeCccCchHHHHHHHHHHHHcCC
Q 030119 125 ALVVDDLIATGGTLCAAINLLERVGA 150 (182)
Q Consensus 125 VLlVDDvitTG~Tl~~~~~~L~~~Ga 150 (182)
|.++-|--..+..+....+.+++.|.
T Consensus 129 vaii~~~~~~~~~~~~~~~~~~~~g~ 154 (382)
T cd06380 129 VVYLYDSDRGLLRLQQLLDYLREKDN 154 (382)
T ss_pred EEEEECCCcchHHHHHHHHHHhccCC
Confidence 76665544455667777777777773
No 190
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=24.62 E-value=33 Score=28.40 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=10.3
Q ss_pred EeCccCchHHHHH
Q 030119 128 VDDLIATGGTLCA 140 (182)
Q Consensus 128 VDDvitTG~Tl~~ 140 (182)
|=|++.||+|+++
T Consensus 159 IvDivsTG~TLka 171 (290)
T COG0040 159 IVDIVSTGTTLKA 171 (290)
T ss_pred EEEeecCCHhHHH
Confidence 3389999999864
No 191
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=24.55 E-value=62 Score=24.42 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.0
Q ss_pred EEEEeCccCchHHHHHHHHH
Q 030119 125 ALVVDDLIATGGTLCAAINL 144 (182)
Q Consensus 125 VLlVDDvitTG~Tl~~~~~~ 144 (182)
=+|+|=...||+|+.+|.++
T Consensus 193 diVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHT
T ss_pred eeeehhhhccChHHHHHHHc
Confidence 46899999999999998774
No 192
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=24.45 E-value=78 Score=29.13 Aligned_cols=27 Identities=19% Similarity=-0.032 Sum_probs=21.8
Q ss_pred EEEEeCCCchhhHHHHHHHhCCCeeee
Q 030119 62 VVAGIEARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 62 ~Iv~v~~~G~~~a~~la~~l~~p~~~~ 88 (182)
-+|..+..+-.++..+|+++|+|++..
T Consensus 352 GvVl~dGaanSH~aIvaRAmGIP~V~~ 378 (756)
T COG3605 352 GVVLEDGAANSHAAIVARAMGIPTVMG 378 (756)
T ss_pred eeeeecCcccchHHHHHHhcCCceecc
Confidence 445556666789999999999999885
No 193
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=24.42 E-value=1.6e+02 Score=19.36 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
+++.|++++. +|.+...++..|+..|-+.+
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 94 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENV 94 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCccc
Confidence 5788999865 68888888999999997644
No 194
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=24.37 E-value=2e+02 Score=18.65 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCe
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAE 151 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~ 151 (182)
++++|+++.+ +|.....++..|+..|-.
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE
Confidence 4678888864 677777788888999986
No 195
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=24.23 E-value=2.1e+02 Score=18.47 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 43 EFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 43 ~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
.....+..++..+.+..+.+.+-.....+.-.-.-|...|+|++.+-
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEE
Confidence 44566788888887777777777665555555666677799998764
No 196
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=24.08 E-value=1.2e+02 Score=25.72 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCchhh--HHHHHHHhCCCeeeee
Q 030119 42 KEFKDTIDMFVERYKGKNISVVAGIEARGFIF--GPPIALAIGAKFVPLR 89 (182)
Q Consensus 42 ~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~--a~~la~~l~~p~~~~~ 89 (182)
.......+.|.++. +.+++.|++++-||.+- +-..|..+|+|++..-
T Consensus 75 ~e~~~a~~~le~~~-g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDaD 123 (353)
T PF06032_consen 75 DEALRAVEALEKYL-GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDAD 123 (353)
T ss_dssp HHHHHHHHHHHHHT-T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB-
T ss_pred hHHHHHHHHHHHhh-CCCccEEeehhcCccchhHHHHHHHHhCCCEEcCC
Confidence 34444445555544 44799999999999863 4445567899998864
No 197
>COG3150 Predicted esterase [General function prediction only]
Probab=24.06 E-value=2.2e+02 Score=21.96 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeeee
Q 030119 37 LLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 37 l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~~ 89 (182)
+-.+|..+-.-.+.+.....+ +...|||+.-|| -+|..|+...|++-+++.
T Consensus 38 l~h~p~~a~~ele~~i~~~~~-~~p~ivGssLGG-Y~At~l~~~~Girav~~N 88 (191)
T COG3150 38 LPHDPQQALKELEKAVQELGD-ESPLIVGSSLGG-YYATWLGFLCGIRAVVFN 88 (191)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCceEEeecchH-HHHHHHHHHhCChhhhcC
Confidence 344555444444444444433 336999999999 578899999999877653
No 198
>PRK11024 colicin uptake protein TolR; Provisional
Probab=24.04 E-value=2.8e+02 Score=19.95 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECA 156 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~ 156 (182)
++..|+|--|=-++-.++..+.+.++++|...++.+
T Consensus 102 ~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 102 PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 456688878888888899999999999998776654
No 199
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.00 E-value=3.1e+02 Score=20.51 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=48.5
Q ss_pred hHHHHHHhhccccCCCCCCCCceEEecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 8 DARINGIKDQIRVVPNFPKPGIMFQDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 8 ~~~~~~~~~~~r~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
++|+.-..+....+..|..+ .-..+......|+.+..+.+.. .+..+++|+++..+.--++..+|-....|++-
T Consensus 8 ~SD~~~~~~a~~~L~~~gi~--~dv~V~SaHRtp~~~~~~~~~a----~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIg 81 (156)
T TIGR01162 8 DSDLPTMKKAADILEEFGIP--YELRVVSAHRTPELMLEYAKEA----EERGIKVIIAGAGGAAHLPGMVAALTPLPVIG 81 (156)
T ss_pred HhhHHHHHHHHHHHHHcCCC--eEEEEECcccCHHHHHHHHHHH----HHCCCeEEEEeCCccchhHHHHHhccCCCEEE
Confidence 34444444444444444433 2234666677777766655543 33467899999988888899999988889876
Q ss_pred ee
Q 030119 88 LR 89 (182)
Q Consensus 88 ~~ 89 (182)
+-
T Consensus 82 vP 83 (156)
T TIGR01162 82 VP 83 (156)
T ss_pred ec
Confidence 54
No 200
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=23.94 E-value=36 Score=26.15 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.2
Q ss_pred EEeCccCchHHHHH
Q 030119 127 VVDDLIATGGTLCA 140 (182)
Q Consensus 127 lVDDvitTG~Tl~~ 140 (182)
.|=|++.||+|+++
T Consensus 151 ~IvDiv~TG~TL~~ 164 (182)
T TIGR00070 151 AIVDIVSTGTTLRE 164 (182)
T ss_pred EEEEEeCCHHHHHH
Confidence 34489999999977
No 201
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=23.71 E-value=1.1e+02 Score=20.71 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=28.8
Q ss_pred CeEEEEeCccCchHHHHHHHHHHHHcCCeEEEE
Q 030119 123 ERALVVDDLIATGGTLCAAINLLERVGAEVVEC 155 (182)
Q Consensus 123 k~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~ 155 (182)
-.||+.++=..+|++=+.+...|+..|.+.+-+
T Consensus 18 ~~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia 50 (91)
T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIA 50 (91)
T ss_pred CCEEEecCcccCCCcHHHHHHHHHHhCCCEEEE
Confidence 459999999999999999999999999875433
No 202
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=23.66 E-value=1.3e+02 Score=26.10 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=41.4
Q ss_pred EecccccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhH-HH---HHHHhCCCeeeee
Q 030119 32 QDITTLLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGFIFG-PP---IALAIGAKFVPLR 89 (182)
Q Consensus 32 ~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a-~~---la~~l~~p~~~~~ 89 (182)
+++-+++.+++..+.+++.+..... +.|.|+.++-=|...+ .. +...||+++..+.
T Consensus 191 ~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp 250 (422)
T PRK05329 191 VNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELP 250 (422)
T ss_pred HHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeC
Confidence 4566778888888888888876543 4578888887777776 44 4467999988764
No 203
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=23.60 E-value=1.8e+02 Score=21.41 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.||+|+|+-|= -|--=-++.+.++..|+.++...+=|
T Consensus 5 ~gKkviiiGdR--DGiPgpAie~c~k~~gaevvfs~TEC 41 (154)
T PRK13265 5 EGKKVIIIGDR--DGIPGPAIEECVKTTGAEVVFSSTEC 41 (154)
T ss_pred cCcEEEEEecC--CCCCcHHHHHHHhccCceEEEEeeeE
Confidence 78888888763 34444455556667899987765544
No 204
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=23.56 E-value=1.9e+02 Score=25.36 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.6
Q ss_pred CeEEEEeC-ccCchHHHHHHHHHHHHc
Q 030119 123 ERALVVDD-LIATGGTLCAAINLLERV 148 (182)
Q Consensus 123 k~VLlVDD-vitTG~Tl~~~~~~L~~~ 148 (182)
..+++||| --.+=.++.++++.+++.
T Consensus 337 ~~~~iIDDsYahnP~s~~aaL~~l~~~ 363 (479)
T PRK14093 337 GEATLIDESYNANPASMAAALGVLGRA 363 (479)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34789999 678888899999999875
No 205
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=23.40 E-value=2.4e+02 Score=23.83 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=22.7
Q ss_pred CCCcEEEEeCCCchhh-HHHHHHHh--CCCeeee
Q 030119 58 KNISVVAGIEARGFIF-GPPIALAI--GAKFVPL 88 (182)
Q Consensus 58 ~~~d~Iv~v~~~G~~~-a~~la~~l--~~p~~~~ 88 (182)
.++|++|.++.-||++ -+.-++.. |+|+++.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyy 108 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYY 108 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999975 23344555 6888764
No 206
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=23.26 E-value=2.9e+02 Score=19.91 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCc-EEEEeCC--Cch---------hhHHHHHHHhCCCeeeeec
Q 030119 49 DMFVERYKGKNIS-VVAGIEA--RGF---------IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 49 ~~la~~~~~~~~d-~Iv~v~~--~G~---------~~a~~la~~l~~p~~~~~k 90 (182)
..+...+...+++ +|||.|. .|. .++..|+..+++|+.+.-.
T Consensus 44 ~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DE 97 (138)
T PRK00109 44 DRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDE 97 (138)
T ss_pred HHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3333344333455 7889872 232 5788888888899888753
No 207
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=45 Score=31.40 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=38.6
Q ss_pred CceEEecccccCCHHHHHHHHHHHHH--HhcCC--CC---cEEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 28 GIMFQDITTLLLKPKEFKDTIDMFVE--RYKGK--NI---SVVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 28 ~~~~~d~~~l~~~~~~~~~l~~~la~--~~~~~--~~---d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
++.|.|+-..=.-.+.++++.+.|-. +|.+. .+ -+++|+|..|- .+|.++|-..|+|++.+-
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence 35666665443333445555555422 22221 22 27889998776 589999999999998863
No 208
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=22.50 E-value=2.2e+02 Score=19.80 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=23.7
Q ss_pred ccCCCCeEEEEeCccCchHHHHHHHHHHHHcCCe
Q 030119 118 AVESAERALVVDDLIATGGTLCAAINLLERVGAE 151 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~ 151 (182)
.+.++++|++.++ .+|..-..+...|+..|-+
T Consensus 82 ~i~~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 82 RLERDPKLLIYCA--RGGMRSQSLAWLLESLGID 113 (128)
T ss_pred ccCCCCeEEEEeC--CCCccHHHHHHHHHHcCCc
Confidence 3557888999997 4465666777888888974
No 209
>PRK08118 topology modulation protein; Reviewed
Probab=22.47 E-value=1e+02 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=23.2
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
+|+|++..|- .+|..|+..++.|++...
T Consensus 5 ~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 5 ILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 6789988886 589999999999976653
No 210
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=22.46 E-value=1.2e+02 Score=25.86 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=21.7
Q ss_pred CCcEEEEeCCCchhhHHHHHHHhCCCeee
Q 030119 59 NISVVAGIEARGFIFGPPIALAIGAKFVP 87 (182)
Q Consensus 59 ~~d~Iv~v~~~G~~~a~~la~~l~~p~~~ 87 (182)
++|+|+++ ||+. +-..|...++|+++
T Consensus 93 ~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 93 KGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred cCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 78999876 7887 66778888999988
No 211
>PRK02399 hypothetical protein; Provisional
Probab=22.36 E-value=2.1e+02 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=30.1
Q ss_pred eEEeccc---ccCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCCch
Q 030119 30 MFQDITT---LLLKPKEFKDTIDMFVERYKGKNISVVAGIEARGF 71 (182)
Q Consensus 30 ~~~d~~~---l~~~~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~ 71 (182)
+|.++.. .-.+++..+++++++++++...+-.+-+-+|.+|+
T Consensus 301 ~~~HNp~vTlmRTt~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~ 345 (406)
T PRK02399 301 LYKHNPQVTLMRTTPEENRQIGRWIAEKLNRAKGPVAFLIPLGGV 345 (406)
T ss_pred ceecCCcceeeecCHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 4555433 33588999999999999997654446666787775
No 212
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=22.15 E-value=99 Score=23.55 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.8
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
++||.+..|= .++..||+.|+.||+...
T Consensus 6 vLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 6 VLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred EEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 6788887775 599999999999998763
No 213
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=22.10 E-value=1.2e+02 Score=19.75 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=23.8
Q ss_pred cCCCCeEEEEeCccCchHHHHHHHHHHHHcCCeE
Q 030119 119 VESAERALVVDDLIATGGTLCAAINLLERVGAEV 152 (182)
Q Consensus 119 ~~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~ 152 (182)
+.++++|+++++ +|.....++..|+..|-..
T Consensus 58 ~~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~ 88 (103)
T cd01447 58 FAEDKPFVFYCA---SGWRSALAGKTLQDMGLKP 88 (103)
T ss_pred CCCCCeEEEEcC---CCCcHHHHHHHHHHcChHH
Confidence 446788999975 5777778889999998653
No 214
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=22.07 E-value=2.6e+02 Score=19.16 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=27.2
Q ss_pred HHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhC-CCeeeee
Q 030119 50 MFVERYKGKNISVVAGIEARGF-IFGPPIALAIG-AKFVPLR 89 (182)
Q Consensus 50 ~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~-~p~~~~~ 89 (182)
.+.+.+++.++|+|-+-...+. .++..+++.++ +|++...
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 5566677678999987776664 44555566667 7887643
No 215
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.89 E-value=3e+02 Score=19.81 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=31.3
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECAC 157 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~v 157 (182)
++..|+|-=|=-++-.++..+.+.++++|...++.++
T Consensus 98 ~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 98 KDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 5667888888888999999999999999988776643
No 216
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=21.83 E-value=2.8e+02 Score=23.30 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCCchhhH-HHHHHHhCCCeeeee
Q 030119 43 EFKDTIDMFVERYKGKNISVVAGIEARGFIFG-PPIALAIGAKFVPLR 89 (182)
Q Consensus 43 ~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a-~~la~~l~~p~~~~~ 89 (182)
.+..+...+.+.+...++|+|+..-.+...+| ...|..+++|++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 77 SMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEE
Confidence 33344445555666668999998876665555 555667799998654
No 217
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=21.66 E-value=1.2e+02 Score=23.24 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=28.4
Q ss_pred eEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEE
Q 030119 124 RALVVDDLIATGGTLCAAINLLERVGAEVVECACVI 159 (182)
Q Consensus 124 ~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~ 159 (182)
.=++.||++-|-.-+..|++.|.....--|++.|-.
T Consensus 115 ~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~ 150 (205)
T COG3896 115 MNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPD 150 (205)
T ss_pred cceeehhcccchhhHHHHHHHHhCCceEEEEeeccH
Confidence 346899999999999999999987666556666555
No 218
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=21.52 E-value=2.8e+02 Score=23.29 Aligned_cols=41 Identities=7% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 48 IDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 48 ~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
.+.++..+. ..+-.|+|+..++. ..+..++..+++|++...
T Consensus 47 ~~~~C~~~~-~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~ 88 (370)
T cd06389 47 TNAFCSQFS-RGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS 88 (370)
T ss_pred HHHHHHHhh-cCcEEEEecCCHHHHHHHHHhhccCCCCeeeec
Confidence 344444443 35778999986654 577899999999999753
No 219
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.50 E-value=1.9e+02 Score=18.95 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.0
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVV 153 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v 153 (182)
.++.|++++ .+|.....++..|+..|-..+
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v 93 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRV 93 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCE
Confidence 367788876 456667777888999997644
No 220
>PRK03839 putative kinase; Provisional
Probab=21.49 E-value=1.1e+02 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.6
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPL 88 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~ 88 (182)
+++|+|..|= .+|..||+.++.|++..
T Consensus 4 ~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 4 AITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5788898886 49999999999998764
No 221
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=21.41 E-value=2.4e+02 Score=21.16 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCeEEEEeCccCch-HHHHHHHHHHHHcCCeEEEEEEE
Q 030119 122 AERALVVDDLIATG-GTLCAAINLLERVGAEVVECACV 158 (182)
Q Consensus 122 gk~VLlVDDvitTG-~Tl~~~~~~L~~~Ga~~v~~~vl 158 (182)
.+.|+|++|.-+.+ ..+.++++.+++.|..+ .+..+
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v-~~Igi 144 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIRV-SVIGL 144 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcEE-EEEEe
Confidence 34577778765442 34667888898888653 33333
No 222
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=21.40 E-value=2.8e+02 Score=20.80 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred ccCCCCeEEEEeCccCchHHHHH-HHHHHHHcCCeEEEEEEEEeecC
Q 030119 118 AVESAERALVVDDLIATGGTLCA-AINLLERVGAEVVECACVIELPD 163 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~Tl~~-~~~~L~~~Ga~~v~~~vl~~~~~ 163 (182)
.+ .|++|+|| -.|.++.. +++.|.+.|++ .+++++..
T Consensus 41 ~l-~gk~vlVi----G~G~~~G~~~a~~L~~~g~~----V~v~~r~~ 78 (168)
T cd01080 41 DL-AGKKVVVV----GRSNIVGKPLAALLLNRNAT----VTVCHSKT 78 (168)
T ss_pred CC-CCCEEEEE----CCcHHHHHHHHHHHhhCCCE----EEEEECCc
Confidence 45 89999985 56776555 88889888885 23555543
No 223
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.40 E-value=2.6e+02 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCcEEEEeCCCchhh--HHHHHHHh-CCCeee
Q 030119 50 MFVERYKGKNISVVAGIEARGFIF--GPPIALAI-GAKFVP 87 (182)
Q Consensus 50 ~la~~~~~~~~d~Iv~v~~~G~~~--a~~la~~l-~~p~~~ 87 (182)
.+.+.+...++|++++++.-||++ +..+-+.. .+|+++
T Consensus 76 ~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 76 ELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEE
Confidence 444455556899999999999874 44444433 256544
No 224
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.40 E-value=1.1e+02 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=23.3
Q ss_pred EEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
+++|+...|- .+|..||+.|++|++++.
T Consensus 230 LllGPtGsGKTllaqTLAr~ldVPfaIcD 258 (564)
T KOG0745|consen 230 LLLGPTGSGKTLLAQTLARVLDVPFAICD 258 (564)
T ss_pred EEECCCCCchhHHHHHHHHHhCCCeEEec
Confidence 6778877664 689999999999999874
No 225
>PRK05569 flavodoxin; Provisional
Probab=21.35 E-value=3e+02 Score=19.27 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=31.5
Q ss_pred CCCeEEEEeCccCc-hHHHHHHHHHHHHcCCeEEEEEEEEeecCchhhc
Q 030119 121 SAERALVVDDLIAT-GGTLCAAINLLERVGAEVVECACVIELPDLKGRE 168 (182)
Q Consensus 121 ~gk~VLlVDDvitT-G~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~~~~ 168 (182)
+||.+.++-=-=.+ |..+..+.+.|++.|.++++.+.+...+.....+
T Consensus 82 ~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~ 130 (141)
T PRK05569 82 ENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELN 130 (141)
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHH
Confidence 67888777532222 4567778888899999988876555555443333
No 226
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=21.33 E-value=2e+02 Score=23.67 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEeecCch
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIELPDLK 165 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~~~~~~ 165 (182)
+|++|+| +-.|++-++++-.|.+.|++.+ ++++|...+
T Consensus 125 ~~~~vli----lGAGGAarAv~~aL~~~g~~~i---~V~NRt~~r 162 (283)
T COG0169 125 TGKRVLI----LGAGGAARAVAFALAEAGAKRI---TVVNRTRER 162 (283)
T ss_pred CCCEEEE----ECCcHHHHHHHHHHHHcCCCEE---EEEeCCHHH
Confidence 6899997 5899999999999999998654 456764433
No 227
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=21.31 E-value=2.6e+02 Score=22.93 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhHH-HHHHHhCCCeeeeecCCCCC-Ccccchheeeccccc-eEE-Ee-
Q 030119 41 PKEFKDTIDMFVERYKGKNISVVAGIEARGFIFGP-PIALAIGAKFVPLRKPKKLP-GKVISEEYILEYGRD-CLE-MH- 115 (182)
Q Consensus 41 ~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a~-~la~~l~~p~~~~~k~~~~~-~~~~~~~~~~~~~~~-~~~-~~- 115 (182)
|......++.|.. ..++.|+|+..++...+. .++...++|++..-...... ... .++...... ... +.
T Consensus 45 ~~~a~~~~~~li~----~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~---~f~~~~~~~~~~~~~~~ 117 (336)
T cd06339 45 AAGAAAAARQAVA----EGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPN---LFYFGLSPEDEARRAAE 117 (336)
T ss_pred cccHHHHHHHHHH----cCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCC---EEEecCChHHHHHHHHH
Confidence 4454455555542 268899998766654433 56667789988743211100 000 011100000 000 00
Q ss_pred -ecccCCCCeEEEEeCccCchHHH-HHHHHHHHHcCCeEEEEE
Q 030119 116 -VGAVESAERALVVDDLIATGGTL-CAAINLLERVGAEVVECA 156 (182)
Q Consensus 116 -~~~~~~gk~VLlVDDvitTG~Tl-~~~~~~L~~~Ga~~v~~~ 156 (182)
.... ..++|.++-+--..|..+ ....+.+++.|.+++...
T Consensus 118 ~~~~~-g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~ 159 (336)
T cd06339 118 YARSQ-GKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIE 159 (336)
T ss_pred HHHhc-CccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeE
Confidence 0112 346777775434456554 555678888898877554
No 228
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=21.29 E-value=1.1e+02 Score=21.38 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEeCCCc-hhhHHHHHHHhCCCeeeee
Q 030119 62 VVAGIEARG-FIFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 62 ~Iv~v~~~G-~~~a~~la~~l~~p~~~~~ 89 (182)
+|.|.+..| -.+|..||..++.|++...
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 567777544 5689999999999987654
No 229
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=21.23 E-value=3e+02 Score=19.23 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEE
Q 030119 121 SAERALVVDDLIATGGTLCAAINLLERVGAEVVECA 156 (182)
Q Consensus 121 ~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~ 156 (182)
++..|+|-=|=-++-.++..+.+.++++|...++.+
T Consensus 92 ~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~ 127 (129)
T TIGR02801 92 PDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLI 127 (129)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEe
Confidence 455788888888888999999999999998877654
No 230
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.21 E-value=2.4e+02 Score=23.13 Aligned_cols=39 Identities=21% Similarity=-0.007 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeee
Q 030119 50 MFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 50 ~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~ 88 (182)
.+.+.+++.++|+|++........+...++..++|+++.
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 344455556899999986443344555667778999764
No 231
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=21.17 E-value=3.5e+02 Score=21.52 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCeeeee
Q 030119 44 FKDTIDMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKFVPLR 89 (182)
Q Consensus 44 ~~~l~~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~~~~~ 89 (182)
++.+.+.+...+....+-++.|++..|- .+|..+|..+|.|+..+.
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~ 53 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4444455555554444557889998775 589999999999988653
No 232
>PRK06620 hypothetical protein; Validated
Probab=20.84 E-value=1.9e+02 Score=22.41 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCeEEEEeCccC-chHHHHHHHHHHHHcCCeE
Q 030119 122 AERALVVDDLIA-TGGTLCAAINLLERVGAEV 152 (182)
Q Consensus 122 gk~VLlVDDvit-TG~Tl~~~~~~L~~~Ga~~ 152 (182)
...+|+|||+=. ++..+-.+.+.+.+.|...
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~i 116 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIINEKQKYL 116 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHHhcCCEE
Confidence 346999999942 4567888888888888643
No 233
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.82 E-value=2.5e+02 Score=22.66 Aligned_cols=39 Identities=18% Similarity=-0.091 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCcEEEEeCCCchhhHHHHHHHhCCCeeee
Q 030119 50 MFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPL 88 (182)
Q Consensus 50 ~la~~~~~~~~d~Iv~v~~~G~~~a~~la~~l~~p~~~~ 88 (182)
.+...+++.++|+|++........+...+...++|+++.
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 344455555899999865332334556677778998763
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=20.67 E-value=3.4e+02 Score=19.69 Aligned_cols=83 Identities=17% Similarity=0.323 Sum_probs=42.2
Q ss_pred EEEeCCCch-hhHHHHHHHhCCCeeeeecCCCC-CCcccchheeeccccceEEEeecccCCCCeEEEEeCccCc-hHHHH
Q 030119 63 VAGIEARGF-IFGPPIALAIGAKFVPLRKPKKL-PGKVISEEYILEYGRDCLEMHVGAVESAERALVVDDLIAT-GGTLC 139 (182)
Q Consensus 63 Iv~v~~~G~-~~a~~la~~l~~p~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLlVDDvitT-G~Tl~ 139 (182)
+-|+|.-|- .++..+|+.+|..+.-+.-.... +....-.. ......+.+++.++.+ ..+|+++|.+=.. =+|-.
T Consensus 4 leg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~-v~~~~~~~f~~~~GPi--f~~ill~DEiNrappktQs 80 (131)
T PF07726_consen 4 LEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP-VYDQETGEFEFRPGPI--FTNILLADEINRAPPKTQS 80 (131)
T ss_dssp EES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE-EEETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHH
T ss_pred eECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee-eeccCCCeeEeecChh--hhceeeecccccCCHHHHH
Confidence 445555443 58889999999877544321111 11100000 0111234677777777 3569999999765 45666
Q ss_pred HHHHHHHHc
Q 030119 140 AAINLLERV 148 (182)
Q Consensus 140 ~~~~~L~~~ 148 (182)
++.+++.+.
T Consensus 81 AlLeam~Er 89 (131)
T PF07726_consen 81 ALLEAMEER 89 (131)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 777777664
No 235
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.64 E-value=1.4e+02 Score=23.63 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCcEEEEeCCCch-hhHHHHHHHhCCCe--eee
Q 030119 49 DMFVERYKGKNISVVAGIEARGF-IFGPPIALAIGAKF--VPL 88 (182)
Q Consensus 49 ~~la~~~~~~~~d~Iv~v~~~G~-~~a~~la~~l~~p~--~~~ 88 (182)
+.|...++....++ .+-.||| .++..+|..||+|+ ++.
T Consensus 94 ~eLv~~L~~~~~~v--~liSGGF~~~i~~Va~~Lgi~~~n~yA 134 (227)
T KOG1615|consen 94 RELVSRLHARGTQV--YLISGGFRQLIEPVAEQLGIPKSNIYA 134 (227)
T ss_pred HHHHHHHHHcCCeE--EEEcCChHHHHHHHHHHhCCcHhhhhh
Confidence 44555555444443 3356888 58899999999998 554
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=20.64 E-value=1.2e+02 Score=20.54 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=21.3
Q ss_pred ccCCCCeEEEEeCccCchHH-----HHHHHHHHHHc
Q 030119 118 AVESAERALVVDDLIATGGT-----LCAAINLLERV 148 (182)
Q Consensus 118 ~~~~gk~VLlVDDvitTG~T-----l~~~~~~L~~~ 148 (182)
.. .++.|+++||+-..-.. ..+..+++...
T Consensus 46 gY-~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 46 GY-QGQPVVIIDDFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred cc-CCCcEEEEeecCccccccchHHHHHHHHHHhcC
Confidence 44 58899999999887754 55566655544
No 237
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=20.41 E-value=2.2e+02 Score=22.23 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=26.4
Q ss_pred CCeEEEEeCccCchHHHHHHHHHHHHcCCeEEEEEEEEe
Q 030119 122 AERALVVDDLIATGGTLCAAINLLERVGAEVVECACVIE 160 (182)
Q Consensus 122 gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~~~vl~~ 160 (182)
..+++||||...+-..-+.+.+.|+..|.. .++++.+
T Consensus 119 ~~~l~Vvd~~~~~~~KTk~~~~~l~~lg~~--~~Lii~~ 155 (205)
T PRK05319 119 EGRLVVVDDLSLEAPKTKELAAKLKNLGLK--KVLIVTD 155 (205)
T ss_pred cCCeEEEeccccCCCCHHHHHHHHHHcCCC--ceEEEEC
Confidence 446899999865556667899999998862 3454443
No 238
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=20.39 E-value=1.5e+02 Score=24.65 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=18.7
Q ss_pred cccCCCCeEEEEeCccCchHHHHHHHHHH
Q 030119 117 GAVESAERALVVDDLIATGGTLCAAINLL 145 (182)
Q Consensus 117 ~~~~~gk~VLlVDDvitTG~Tl~~~~~~L 145 (182)
..+..|.++|++|| +.|-=..++++-+
T Consensus 197 aNV~~g~r~Lv~D~--~~GLv~aav~eRm 223 (299)
T PF04189_consen 197 ANVHAGGRVLVVDD--CGGLVVAAVAERM 223 (299)
T ss_pred cCCCCCCeEEEEeC--CCChHHHHHHHHh
Confidence 45678999999999 5555555555444
No 239
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=20.34 E-value=1.9e+02 Score=20.87 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcC--CCCcEEEEeCCCch----hhHHHHHHHhCCCeeeeec
Q 030119 45 KDTIDMFVERYKG--KNISVVAGIEARGF----IFGPPIALAIGAKFVPLRK 90 (182)
Q Consensus 45 ~~l~~~la~~~~~--~~~d~Iv~v~~~G~----~~a~~la~~l~~p~~~~~k 90 (182)
..+.+.+.+.+.+ .+-.-++=-+.||| +++..++..++.|+.++.-
T Consensus 74 ~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~E 125 (136)
T PF09651_consen 74 RNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIFE 125 (136)
T ss_dssp HHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEET
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEEc
Confidence 3444455554431 12234555577998 4777888888899998863
No 240
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=20.28 E-value=2.1e+02 Score=24.01 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCchhhH-HHHHHHhCCCeeeee
Q 030119 41 PKEFKDTIDMFVERYKGKNISVVAGIEARGFIFG-PPIALAIGAKFVPLR 89 (182)
Q Consensus 41 ~~~~~~l~~~la~~~~~~~~d~Iv~v~~~G~~~a-~~la~~l~~p~~~~~ 89 (182)
...+..+...+...+...+||+|+-.-.+.-.+| +..|..+++|++.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hie 98 (346)
T PF02350_consen 49 AKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIE 98 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEec
Confidence 3444455556666666668999998877776666 455566799988764
Done!