Query 030120
Match_columns 182
No_of_seqs 155 out of 1789
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 1.1E-37 2.4E-42 209.0 20.3 179 1-179 1-179 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 1.9E-37 4.1E-42 208.2 20.5 179 1-179 1-179 (182)
3 cd04149 Arf6 Arf6 subfamily. 100.0 3.1E-36 6.7E-41 200.0 18.4 163 13-175 5-167 (168)
4 smart00177 ARF ARF-like small 100.0 5.5E-36 1.2E-40 200.1 19.8 166 13-178 9-174 (175)
5 KOG0084 GTPase Rab1/YPT1, smal 100.0 6.4E-37 1.4E-41 198.2 12.4 161 15-179 7-173 (205)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.1E-36 6.7E-41 194.5 14.6 165 12-179 17-186 (221)
7 KOG0092 GTPase Rab5/YPT51 and 100.0 4.7E-36 1E-40 193.5 13.7 162 15-180 3-169 (200)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.5E-35 1.4E-39 192.1 18.5 158 18-175 1-158 (159)
9 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.1E-34 2.4E-39 193.8 19.4 172 4-175 2-173 (174)
10 PF00025 Arf: ADP-ribosylation 100.0 5.7E-34 1.2E-38 190.0 21.4 173 5-177 1-175 (175)
11 cd04154 Arl2 Arl2 subfamily. 100.0 4.1E-34 8.9E-39 190.9 18.9 163 13-175 10-172 (173)
12 cd04158 ARD1 ARD1 subfamily. 100.0 7.1E-34 1.5E-38 189.0 19.5 162 19-180 1-163 (169)
13 cd04151 Arl1 Arl1 subfamily. 100.0 2.7E-33 6E-38 184.3 17.9 157 19-175 1-157 (158)
14 smart00178 SAR Sar1p-like memb 100.0 4.6E-33 9.9E-38 187.4 19.3 172 5-176 4-183 (184)
15 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-33 3.4E-38 191.2 15.9 158 18-179 1-164 (202)
16 KOG0070 GTP-binding ADP-ribosy 100.0 2.4E-33 5.1E-38 180.5 15.8 180 1-180 1-180 (181)
17 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-33 3E-38 189.8 14.7 158 15-179 4-168 (189)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.3E-33 4.9E-38 186.9 15.1 160 17-179 2-165 (172)
19 cd04126 Rab20 Rab20 subfamily. 100.0 3.2E-33 7E-38 191.6 15.7 160 18-178 1-190 (220)
20 KOG0080 GTPase Rab18, small G 100.0 8E-34 1.7E-38 177.8 11.1 164 15-181 9-177 (209)
21 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.9E-32 4.2E-37 180.3 18.4 157 19-175 1-157 (158)
22 KOG0098 GTPase Rab2, small G p 100.0 1E-33 2.2E-38 181.5 11.6 160 15-178 4-168 (216)
23 cd04133 Rop_like Rop subfamily 100.0 5.7E-33 1.2E-37 184.9 15.3 161 18-180 2-175 (176)
24 cd00877 Ran Ran (Ras-related n 100.0 2.4E-32 5.1E-37 181.1 17.9 157 18-181 1-162 (166)
25 cd04157 Arl6 Arl6 subfamily. 100.0 2.1E-32 4.5E-37 180.8 17.5 157 19-175 1-161 (162)
26 cd00879 Sar1 Sar1 subfamily. 100.0 4.5E-32 9.8E-37 183.6 19.4 164 14-177 16-190 (190)
27 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.9E-32 8.5E-37 182.7 18.6 164 16-179 2-171 (183)
28 KOG0078 GTP-binding protein SE 100.0 3.2E-33 6.9E-38 183.5 12.6 163 13-179 8-175 (207)
29 cd04122 Rab14 Rab14 subfamily. 100.0 9.1E-33 2E-37 183.3 14.9 157 17-179 2-165 (166)
30 KOG0394 Ras-related GTPase [Ge 100.0 2.4E-33 5.2E-38 179.5 11.4 165 14-179 6-179 (210)
31 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.8E-32 8.2E-37 179.2 17.5 157 19-175 1-159 (160)
32 KOG0073 GTP-binding ADP-ribosy 100.0 8.2E-32 1.8E-36 169.3 17.2 168 12-179 11-179 (185)
33 cd04127 Rab27A Rab27a subfamil 100.0 1E-32 2.3E-37 185.2 14.2 160 15-179 2-178 (180)
34 cd04136 Rap_like Rap-like subf 100.0 1.8E-32 3.9E-37 181.3 15.0 156 17-177 1-162 (163)
35 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-32 2.4E-37 184.6 13.9 161 15-177 3-179 (182)
36 cd04161 Arl2l1_Arl13_like Arl2 100.0 8.8E-32 1.9E-36 178.5 17.9 157 19-175 1-166 (167)
37 cd01875 RhoG RhoG subfamily. 100.0 9.3E-33 2E-37 186.8 13.4 161 17-179 3-178 (191)
38 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.3E-31 2.7E-36 182.8 18.8 159 18-180 1-170 (201)
39 PTZ00369 Ras-like protein; Pro 100.0 2E-32 4.3E-37 185.1 14.6 160 15-179 3-168 (189)
40 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.5E-32 2.1E-36 177.8 17.4 154 20-175 2-163 (164)
41 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.5E-32 5.4E-37 182.3 14.7 157 18-176 2-173 (175)
42 cd04175 Rap1 Rap1 subgroup. T 100.0 2.3E-32 5E-37 181.0 14.1 157 17-178 1-163 (164)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 2.8E-32 6E-37 181.1 14.5 156 18-178 1-167 (168)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.1E-32 1.8E-36 180.7 16.6 159 18-179 1-167 (182)
45 cd04155 Arl3 Arl3 subfamily. 100.0 3.1E-31 6.7E-36 177.0 19.3 163 13-175 10-172 (173)
46 cd01867 Rab8_Rab10_Rab13_like 100.0 3.8E-32 8.3E-37 180.4 14.8 158 16-179 2-166 (167)
47 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-31 2.6E-36 177.0 16.8 156 17-177 1-161 (162)
48 PLN03071 GTP-binding nuclear p 100.0 1.1E-31 2.5E-36 184.8 17.2 158 14-179 10-173 (219)
49 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.8E-32 1.5E-36 179.5 15.4 161 19-180 2-167 (170)
50 cd01865 Rab3 Rab3 subfamily. 100.0 5.1E-32 1.1E-36 179.5 14.6 156 18-179 2-164 (165)
51 smart00173 RAS Ras subfamily o 100.0 5.7E-32 1.2E-36 179.1 14.6 157 18-179 1-163 (164)
52 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.5E-31 5.3E-36 176.5 17.6 157 19-175 1-166 (167)
53 cd04117 Rab15 Rab15 subfamily. 100.0 5.9E-32 1.3E-36 178.4 14.5 154 18-176 1-160 (161)
54 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.1E-32 1.1E-36 186.7 14.7 163 15-179 11-189 (232)
55 cd04131 Rnd Rnd subfamily. Th 100.0 4E-32 8.7E-37 181.5 13.7 159 17-177 1-175 (178)
56 cd04111 Rab39 Rab39 subfamily. 100.0 7.3E-32 1.6E-36 184.9 15.1 158 17-179 2-167 (211)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 9.9E-32 2.2E-36 177.8 15.0 156 17-177 1-162 (163)
58 cd04144 Ras2 Ras2 subfamily. 100.0 8.4E-32 1.8E-36 182.2 14.3 157 19-180 1-165 (190)
59 cd04109 Rab28 Rab28 subfamily. 100.0 1.3E-31 2.9E-36 184.3 15.3 157 18-179 1-167 (215)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9.2E-32 2E-36 178.0 13.9 156 17-177 2-163 (164)
61 KOG0071 GTP-binding ADP-ribosy 100.0 6.3E-31 1.4E-35 161.2 16.3 179 1-179 1-179 (180)
62 KOG0093 GTPase Rab3, small G p 100.0 3.9E-32 8.4E-37 167.9 10.5 161 15-179 19-184 (193)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.9E-31 4.1E-36 176.9 14.7 157 17-179 2-165 (166)
64 cd04110 Rab35 Rab35 subfamily. 100.0 2.3E-31 4.9E-36 181.2 15.3 158 15-179 4-168 (199)
65 cd04103 Centaurin_gamma Centau 100.0 2.7E-31 5.9E-36 174.4 15.1 153 18-176 1-157 (158)
66 cd04140 ARHI_like ARHI subfami 100.0 1.9E-31 4.2E-36 176.7 14.5 155 18-175 2-162 (165)
67 cd04159 Arl10_like Arl10-like 100.0 1.3E-30 2.8E-35 171.4 18.0 156 20-175 2-158 (159)
68 cd04124 RabL2 RabL2 subfamily. 100.0 5E-31 1.1E-35 174.0 16.0 155 18-180 1-160 (161)
69 cd01868 Rab11_like Rab11-like. 100.0 2.9E-31 6.2E-36 175.9 14.5 156 16-177 2-164 (165)
70 cd04134 Rho3 Rho3 subfamily. 100.0 3.5E-31 7.5E-36 179.0 14.8 161 18-180 1-176 (189)
71 cd01866 Rab2 Rab2 subfamily. 100.0 5E-31 1.1E-35 175.2 15.0 158 16-179 3-167 (168)
72 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.5E-31 7.6E-36 181.7 14.5 161 17-178 1-176 (222)
73 cd04116 Rab9 Rab9 subfamily. 100.0 1.8E-30 3.9E-35 172.9 17.3 158 15-176 3-169 (170)
74 cd01871 Rac1_like Rac1-like su 100.0 3.8E-31 8.2E-36 176.5 13.7 158 17-176 1-173 (174)
75 cd04113 Rab4 Rab4 subfamily. 100.0 4.3E-31 9.3E-36 174.4 13.7 154 18-177 1-161 (161)
76 cd01864 Rab19 Rab19 subfamily. 100.0 8.6E-31 1.9E-35 173.6 15.2 156 16-176 2-164 (165)
77 cd04142 RRP22 RRP22 subfamily. 100.0 1.6E-30 3.5E-35 176.4 16.7 159 18-180 1-176 (198)
78 cd04112 Rab26 Rab26 subfamily. 100.0 6.2E-31 1.4E-35 178.1 14.6 157 18-180 1-165 (191)
79 cd04125 RabA_like RabA-like su 100.0 8.5E-31 1.8E-35 177.1 14.9 156 18-179 1-163 (188)
80 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.8E-31 8.1E-36 173.2 12.1 160 15-178 12-176 (222)
81 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.3E-31 1.6E-35 174.7 13.6 158 17-178 2-169 (170)
82 cd04106 Rab23_lke Rab23-like s 100.0 5.7E-31 1.2E-35 173.9 12.9 152 18-176 1-161 (162)
83 PLN03110 Rab GTPase; Provision 100.0 1.2E-30 2.5E-35 179.6 14.7 160 15-179 10-175 (216)
84 cd01863 Rab18 Rab18 subfamily. 100.0 5.2E-30 1.1E-34 169.2 17.1 154 18-176 1-160 (161)
85 cd01861 Rab6 Rab6 subfamily. 100.0 1.4E-30 2.9E-35 172.0 14.0 154 18-177 1-161 (161)
86 KOG0079 GTP-binding protein H- 100.0 1.1E-31 2.4E-36 166.0 8.1 159 16-179 7-170 (198)
87 smart00176 RAN Ran (Ras-relate 100.0 3.3E-30 7.1E-35 174.7 16.0 149 23-179 1-155 (200)
88 PLN03118 Rab family protein; P 100.0 2.3E-30 4.9E-35 177.9 15.4 161 15-180 12-179 (211)
89 smart00175 RAB Rab subfamily o 100.0 1.6E-30 3.6E-35 172.0 14.2 156 18-179 1-163 (164)
90 cd04143 Rhes_like Rhes_like su 100.0 1.3E-29 2.8E-34 177.0 19.0 156 18-177 1-170 (247)
91 cd01860 Rab5_related Rab5-rela 100.0 1.1E-29 2.3E-34 168.0 17.4 155 17-177 1-162 (163)
92 PF00071 Ras: Ras family; Int 100.0 7.6E-31 1.7E-35 173.3 11.7 154 19-178 1-161 (162)
93 KOG0095 GTPase Rab30, small G 100.0 3.7E-31 8E-36 164.1 9.4 158 17-178 7-169 (213)
94 cd01862 Rab7 Rab7 subfamily. 100.0 1.7E-29 3.8E-34 168.4 18.0 159 18-180 1-169 (172)
95 cd04177 RSR1 RSR1 subgroup. R 100.0 4.4E-30 9.6E-35 170.7 14.9 157 17-177 1-163 (168)
96 cd04118 Rab24 Rab24 subfamily. 100.0 5.5E-30 1.2E-34 173.8 15.5 160 18-179 1-167 (193)
97 cd04101 RabL4 RabL4 (Rab-like4 100.0 3E-30 6.6E-35 170.8 13.9 154 18-177 1-163 (164)
98 cd04132 Rho4_like Rho4-like su 100.0 3.5E-30 7.7E-35 174.0 14.3 155 18-179 1-168 (187)
99 KOG0086 GTPase Rab4, small G p 100.0 2.9E-30 6.2E-35 160.7 12.2 160 15-178 7-171 (214)
100 smart00174 RHO Rho (Ras homolo 100.0 5.7E-30 1.2E-34 171.1 14.6 158 20-179 1-173 (174)
101 KOG0075 GTP-binding ADP-ribosy 100.0 5.5E-30 1.2E-34 158.3 12.6 167 15-181 18-185 (186)
102 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-29 5.1E-34 166.4 16.6 157 18-179 1-163 (164)
103 cd04135 Tc10 TC10 subfamily. 100.0 8.8E-30 1.9E-34 170.1 14.6 159 18-177 1-173 (174)
104 cd01893 Miro1 Miro1 subfamily. 100.0 2.4E-29 5.1E-34 166.8 16.2 160 18-178 1-164 (166)
105 KOG0091 GTPase Rab39, small G 100.0 1.6E-30 3.5E-35 163.5 9.9 160 16-178 7-173 (213)
106 PLN03108 Rab family protein; P 100.0 1.1E-29 2.5E-34 174.1 14.6 159 15-179 4-169 (210)
107 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.7E-30 1.7E-34 170.3 13.4 156 18-175 1-171 (173)
108 cd01892 Miro2 Miro2 subfamily. 100.0 1.4E-29 3E-34 168.3 14.5 157 15-179 2-167 (169)
109 cd04123 Rab21 Rab21 subfamily. 100.0 1.6E-29 3.4E-34 166.9 14.2 154 18-177 1-161 (162)
110 cd04146 RERG_RasL11_like RERG/ 100.0 1E-29 2.2E-34 168.5 12.8 155 19-178 1-164 (165)
111 cd04148 RGK RGK subfamily. Th 100.0 2.3E-29 5.1E-34 173.6 14.8 154 18-178 1-163 (221)
112 cd04147 Ras_dva Ras-dva subfam 100.0 6.9E-29 1.5E-33 168.9 16.8 159 19-178 1-163 (198)
113 cd01873 RhoBTB RhoBTB subfamil 100.0 1.3E-29 2.9E-34 171.4 13.0 156 17-176 2-194 (195)
114 cd04114 Rab30 Rab30 subfamily. 100.0 8.8E-29 1.9E-33 164.5 14.8 158 15-177 5-168 (169)
115 cd00154 Rab Rab family. Rab G 100.0 2.2E-28 4.8E-33 160.7 15.7 151 18-174 1-158 (159)
116 cd04137 RheB Rheb (Ras Homolog 100.0 7.1E-29 1.5E-33 166.6 13.5 157 18-179 2-164 (180)
117 cd00157 Rho Rho (Ras homology) 100.0 1E-28 2.2E-33 164.5 13.8 157 18-175 1-170 (171)
118 cd01870 RhoA_like RhoA-like su 100.0 3.8E-28 8.1E-33 162.4 16.3 159 17-177 1-174 (175)
119 cd00876 Ras Ras family. The R 100.0 1.4E-28 3E-33 162.1 13.2 154 19-177 1-160 (160)
120 KOG0088 GTPase Rab21, small G 100.0 2E-29 4.3E-34 157.9 7.9 161 15-179 11-176 (218)
121 PTZ00132 GTP-binding nuclear p 100.0 1.9E-27 4.2E-32 163.8 18.3 163 12-181 4-171 (215)
122 KOG0072 GTP-binding ADP-ribosy 100.0 1.1E-28 2.4E-33 152.0 10.4 180 1-180 1-181 (182)
123 KOG0076 GTP-binding ADP-ribosy 100.0 6.4E-29 1.4E-33 157.8 8.8 180 1-180 1-189 (197)
124 cd04129 Rho2 Rho2 subfamily. 100.0 1.9E-27 4E-32 160.6 14.4 161 17-179 1-174 (187)
125 KOG0081 GTPase Rab27, small G 100.0 1.6E-29 3.4E-34 158.4 2.8 160 16-178 8-181 (219)
126 cd01897 NOG NOG1 is a nucleola 100.0 1E-26 2.3E-31 154.4 15.4 152 19-177 2-167 (168)
127 cd01898 Obg Obg subfamily. Th 100.0 9.8E-27 2.1E-31 154.8 15.1 156 19-177 2-170 (170)
128 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.6E-26 3.5E-31 156.6 15.8 146 18-163 1-175 (202)
129 KOG0395 Ras-related GTPase [Ge 99.9 7.1E-27 1.5E-31 157.3 12.5 161 16-179 2-166 (196)
130 PRK12299 obgE GTPase CgtA; Rev 99.9 2.4E-26 5.2E-31 166.3 16.1 160 18-181 159-331 (335)
131 cd04171 SelB SelB subfamily. 99.9 1.5E-26 3.2E-31 153.0 13.2 153 19-175 2-163 (164)
132 PRK15494 era GTPase Era; Provi 99.9 4.5E-26 9.8E-31 165.9 16.6 158 15-181 50-219 (339)
133 cd01890 LepA LepA subfamily. 99.9 2E-26 4.3E-31 154.6 13.2 154 19-179 2-178 (179)
134 KOG0097 GTPase Rab14, small G 99.9 8.3E-27 1.8E-31 143.7 10.2 161 15-179 9-174 (215)
135 TIGR00436 era GTP-binding prot 99.9 7.6E-26 1.6E-30 160.6 16.4 154 19-181 2-167 (270)
136 cd01878 HflX HflX subfamily. 99.9 4.6E-26 9.9E-31 155.9 14.3 154 15-177 39-204 (204)
137 cd00881 GTP_translation_factor 99.9 1.6E-25 3.6E-30 151.2 14.7 156 19-179 1-188 (189)
138 KOG0083 GTPase Rab26/Rab37, sm 99.9 2.6E-28 5.6E-33 148.8 0.9 155 21-179 1-161 (192)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.5E-25 5.4E-30 147.8 14.8 154 19-178 2-166 (168)
140 PRK03003 GTP-binding protein D 99.9 3.6E-25 7.9E-30 167.9 17.0 159 16-179 210-383 (472)
141 TIGR00231 small_GTP small GTP- 99.9 6E-25 1.3E-29 144.2 15.3 153 17-174 1-160 (161)
142 KOG0074 GTP-binding ADP-ribosy 99.9 1.2E-25 2.6E-30 138.3 10.8 165 14-178 14-179 (185)
143 PRK04213 GTP-binding protein; 99.9 4.7E-26 1E-30 155.5 9.9 162 14-181 6-195 (201)
144 TIGR02729 Obg_CgtA Obg family 99.9 5.4E-25 1.2E-29 159.2 15.8 156 18-177 158-328 (329)
145 COG1159 Era GTPase [General fu 99.9 2E-25 4.4E-30 154.5 12.9 159 16-181 5-175 (298)
146 TIGR03156 GTP_HflX GTP-binding 99.9 5.1E-25 1.1E-29 160.6 15.2 150 16-176 188-350 (351)
147 PF02421 FeoB_N: Ferrous iron 99.9 5.2E-26 1.1E-30 146.6 8.3 141 18-173 1-156 (156)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3E-24 6.5E-29 140.9 16.7 143 18-177 2-156 (157)
149 cd01889 SelB_euk SelB subfamil 99.9 4.9E-25 1.1E-29 149.4 13.0 158 18-180 1-188 (192)
150 cd01881 Obg_like The Obg-like 99.9 5.8E-25 1.3E-29 147.0 12.5 152 22-176 1-175 (176)
151 PRK05291 trmE tRNA modificatio 99.9 1.9E-24 4.1E-29 162.6 16.4 147 15-179 213-371 (449)
152 TIGR03594 GTPase_EngA ribosome 99.9 1.7E-24 3.6E-29 163.3 16.1 159 15-178 170-344 (429)
153 cd01888 eIF2_gamma eIF2-gamma 99.9 6.7E-25 1.5E-29 149.7 12.7 162 18-182 1-203 (203)
154 cd01879 FeoB Ferrous iron tran 99.9 2.2E-24 4.8E-29 141.8 14.4 145 22-177 1-156 (158)
155 cd01891 TypA_BipA TypA (tyrosi 99.9 2.7E-24 5.9E-29 145.9 15.0 157 18-179 3-193 (194)
156 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-23 2.3E-28 140.4 16.8 155 17-176 2-173 (174)
157 KOG4252 GTP-binding protein [S 99.9 6.8E-27 1.5E-31 149.5 1.0 160 15-179 18-182 (246)
158 cd00882 Ras_like_GTPase Ras-li 99.9 1.9E-24 4E-29 140.8 12.5 150 22-174 1-156 (157)
159 TIGR02528 EutP ethanolamine ut 99.9 5.1E-25 1.1E-29 142.5 9.5 134 19-174 2-141 (142)
160 PRK03003 GTP-binding protein D 99.9 5.3E-24 1.1E-28 161.6 16.2 153 15-179 36-200 (472)
161 PLN00023 GTP-binding protein; 99.9 4.4E-24 9.5E-29 151.6 14.4 123 11-133 15-166 (334)
162 cd01894 EngA1 EngA1 subfamily. 99.9 5E-24 1.1E-28 139.9 13.7 145 21-177 1-157 (157)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 1.7E-23 3.7E-28 155.1 17.8 155 19-180 160-329 (424)
164 PRK12296 obgE GTPase CgtA; Rev 99.9 5.3E-24 1.1E-28 159.7 15.2 160 17-180 159-342 (500)
165 PRK00454 engB GTP-binding prot 99.9 4.3E-24 9.3E-29 145.2 13.4 164 9-179 16-195 (196)
166 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.7E-23 3.7E-28 156.7 17.7 148 15-178 201-360 (442)
167 PRK00089 era GTPase Era; Revie 99.9 1.5E-23 3.3E-28 150.7 16.8 159 16-181 4-174 (292)
168 PF00009 GTP_EFTU: Elongation 99.9 4E-24 8.7E-29 144.4 13.0 157 16-178 2-187 (188)
169 PRK00093 GTP-binding protein D 99.9 2.3E-23 5E-28 157.3 16.2 159 15-178 171-344 (435)
170 KOG0393 Ras-related small GTPa 99.9 6.8E-25 1.5E-29 144.9 6.8 163 15-179 2-180 (198)
171 PTZ00099 rab6; Provisional 99.9 7.8E-24 1.7E-28 141.1 12.0 133 42-180 5-144 (176)
172 PRK11058 GTPase HflX; Provisio 99.9 7.1E-23 1.5E-27 152.6 17.6 153 18-179 198-363 (426)
173 PRK15467 ethanolamine utilizat 99.9 1.3E-23 2.9E-28 137.9 12.2 142 19-179 3-148 (158)
174 cd04163 Era Era subfamily. Er 99.9 5.2E-23 1.1E-27 136.1 15.0 154 17-177 3-168 (168)
175 cd04105 SR_beta Signal recogni 99.9 3.4E-23 7.5E-28 141.1 14.4 157 19-175 2-202 (203)
176 PRK12298 obgE GTPase CgtA; Rev 99.9 5E-23 1.1E-27 151.8 16.0 160 19-180 161-335 (390)
177 COG1100 GTPase SAR1 and relate 99.9 3.9E-23 8.5E-28 142.8 14.5 161 17-178 5-185 (219)
178 COG1160 Predicted GTPases [Gen 99.9 1.5E-23 3.3E-28 152.7 12.5 149 18-178 4-165 (444)
179 COG1160 Predicted GTPases [Gen 99.9 9.9E-23 2.2E-27 148.5 16.4 159 16-179 177-352 (444)
180 PRK09518 bifunctional cytidyla 99.9 7.1E-23 1.5E-27 162.0 16.5 159 16-179 449-622 (712)
181 TIGR00487 IF-2 translation ini 99.9 6.2E-23 1.3E-27 158.0 15.7 155 15-175 85-247 (587)
182 TIGR03594 GTPase_EngA ribosome 99.9 7.1E-23 1.5E-27 154.5 15.2 149 19-179 1-161 (429)
183 cd00880 Era_like Era (E. coli 99.9 1.4E-22 2.9E-27 133.1 14.1 150 22-176 1-162 (163)
184 PRK00093 GTP-binding protein D 99.9 1.3E-22 2.9E-27 153.2 15.7 147 18-176 2-160 (435)
185 TIGR03598 GTPase_YsxC ribosome 99.9 2.5E-23 5.4E-28 139.5 10.5 151 11-167 12-179 (179)
186 PRK05306 infB translation init 99.9 1.6E-22 3.6E-27 159.2 16.2 156 14-175 287-449 (787)
187 TIGR01393 lepA GTP-binding pro 99.9 2.8E-22 6.1E-27 155.0 16.5 157 17-180 3-182 (595)
188 COG0486 ThdF Predicted GTPase 99.9 3.7E-22 8.1E-27 145.9 16.0 151 15-179 215-377 (454)
189 TIGR00475 selB selenocysteine- 99.9 1E-22 2.2E-27 157.3 13.7 156 18-178 1-166 (581)
190 PRK09518 bifunctional cytidyla 99.9 3.5E-22 7.7E-27 158.1 16.4 153 15-179 273-437 (712)
191 CHL00189 infB translation init 99.9 4.7E-22 1E-26 155.4 14.5 156 15-176 242-408 (742)
192 PF08477 Miro: Miro-like prote 99.9 7.6E-23 1.6E-27 128.4 7.9 109 19-129 1-119 (119)
193 PRK12317 elongation factor 1-a 99.9 8.9E-22 1.9E-26 148.0 14.5 153 14-168 3-195 (425)
194 cd01896 DRG The developmentall 99.9 3.6E-21 7.9E-26 133.6 16.4 150 19-178 2-226 (233)
195 cd01884 EF_Tu EF-Tu subfamily. 99.9 7.3E-22 1.6E-26 133.4 12.6 145 17-166 2-171 (195)
196 COG0218 Predicted GTPase [Gene 99.9 1.7E-21 3.6E-26 128.4 13.6 167 9-180 16-199 (200)
197 cd04168 TetM_like Tet(M)-like 99.9 4.1E-21 8.9E-26 133.5 15.3 156 19-179 1-236 (237)
198 PRK05433 GTP-binding protein L 99.9 4.4E-21 9.5E-26 148.6 16.7 159 15-180 5-186 (600)
199 PRK09554 feoB ferrous iron tra 99.9 2.9E-21 6.3E-26 152.7 15.9 151 16-177 2-167 (772)
200 TIGR00483 EF-1_alpha translati 99.9 1E-21 2.2E-26 147.7 12.6 153 14-168 4-197 (426)
201 COG2229 Predicted GTPase [Gene 99.9 7.3E-21 1.6E-25 122.8 14.6 158 12-176 5-176 (187)
202 TIGR03680 eif2g_arch translati 99.9 1.2E-21 2.7E-26 146.1 12.8 162 15-179 2-197 (406)
203 TIGR01394 TypA_BipA GTP-bindin 99.9 3.3E-21 7.1E-26 148.9 15.2 158 18-180 2-193 (594)
204 PRK10218 GTP-binding protein; 99.9 6.1E-21 1.3E-25 147.2 16.4 160 16-180 4-197 (607)
205 TIGR00437 feoB ferrous iron tr 99.9 2.5E-21 5.4E-26 149.8 13.5 143 24-177 1-154 (591)
206 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.3E-21 4.9E-26 132.8 11.1 146 19-168 1-184 (208)
207 PRK04000 translation initiatio 99.9 6.6E-21 1.4E-25 142.2 13.6 164 14-180 6-203 (411)
208 KOG1673 Ras GTPases [General f 99.9 1.6E-21 3.4E-26 122.2 8.5 167 10-178 13-186 (205)
209 TIGR00491 aIF-2 translation in 99.9 1.1E-20 2.4E-25 145.4 14.3 154 17-175 4-213 (590)
210 KOG3883 Ras family small GTPas 99.9 3.9E-20 8.5E-25 115.6 13.8 163 15-180 7-177 (198)
211 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 5.2E-21 1.1E-25 123.6 10.0 159 16-181 9-172 (216)
212 PRK10512 selenocysteinyl-tRNA- 99.9 1.2E-20 2.7E-25 146.3 14.0 155 19-178 2-166 (614)
213 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.9E-20 6.2E-25 128.2 13.7 152 19-175 1-220 (224)
214 cd01876 YihA_EngB The YihA (En 99.9 2E-20 4.3E-25 124.0 12.1 153 19-177 1-170 (170)
215 KOG1423 Ras-like GTPase ERA [C 99.9 9.7E-21 2.1E-25 131.3 10.6 161 14-180 69-273 (379)
216 PRK12736 elongation factor Tu; 99.8 2.5E-20 5.4E-25 138.6 13.3 162 14-180 9-203 (394)
217 cd01883 EF1_alpha Eukaryotic e 99.8 1.7E-20 3.6E-25 129.5 10.8 146 19-167 1-194 (219)
218 cd04104 p47_IIGP_like p47 (47- 99.8 4.8E-20 1E-24 125.3 12.1 158 17-181 1-187 (197)
219 cd04169 RF3 RF3 subfamily. Pe 99.8 2E-19 4.2E-24 127.1 15.5 111 18-133 3-138 (267)
220 KOG0077 Vesicle coat complex C 99.8 9.9E-21 2.1E-25 119.8 7.9 162 15-176 18-191 (193)
221 cd01886 EF-G Elongation factor 99.8 1.6E-19 3.4E-24 127.7 14.9 109 19-132 1-130 (270)
222 PRK12735 elongation factor Tu; 99.8 5.5E-20 1.2E-24 136.9 13.2 159 15-178 10-203 (396)
223 PF10662 PduV-EutP: Ethanolami 99.8 4.6E-20 1E-24 116.5 9.4 135 19-174 3-142 (143)
224 cd04170 EF-G_bact Elongation f 99.8 2.7E-19 5.9E-24 127.1 14.5 110 19-133 1-131 (268)
225 PRK04004 translation initiatio 99.8 2.5E-19 5.3E-24 138.5 15.3 156 15-175 4-215 (586)
226 CHL00071 tufA elongation facto 99.8 1.2E-19 2.6E-24 135.6 13.2 160 14-178 9-211 (409)
227 COG0370 FeoB Fe2+ transport sy 99.8 1.1E-19 2.3E-24 138.4 11.8 149 16-179 2-165 (653)
228 COG1084 Predicted GTPase [Gene 99.8 7E-19 1.5E-23 123.4 14.6 162 8-176 157-334 (346)
229 TIGR00485 EF-Tu translation el 99.8 2.1E-19 4.6E-24 133.8 12.7 159 14-177 9-200 (394)
230 cd04167 Snu114p Snu114p subfam 99.8 2E-19 4.3E-24 123.7 11.7 156 19-179 2-212 (213)
231 KOG1489 Predicted GTP-binding 99.8 3.4E-19 7.3E-24 124.2 12.3 155 17-176 196-365 (366)
232 cd01885 EF2 EF2 (for archaea a 99.8 3.1E-19 6.6E-24 122.6 11.7 108 19-131 2-138 (222)
233 PRK00049 elongation factor Tu; 99.8 6E-19 1.3E-23 131.3 13.3 159 15-178 10-203 (396)
234 PLN03126 Elongation factor Tu; 99.8 6.2E-19 1.3E-23 133.2 13.2 146 14-164 78-248 (478)
235 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 5.1E-19 1.1E-23 121.5 11.6 160 19-180 1-178 (232)
236 PRK13351 elongation factor G; 99.8 1.6E-18 3.4E-23 137.4 15.8 115 14-133 5-140 (687)
237 PLN03127 Elongation factor Tu; 99.8 2.2E-18 4.8E-23 129.5 15.4 161 14-179 58-253 (447)
238 PRK00741 prfC peptide chain re 99.8 2.3E-18 5E-23 131.6 15.7 114 15-133 8-146 (526)
239 COG0532 InfB Translation initi 99.8 1.6E-18 3.5E-23 128.7 14.2 154 16-175 4-167 (509)
240 PTZ00327 eukaryotic translatio 99.8 7.1E-19 1.5E-23 132.1 12.4 165 13-180 30-235 (460)
241 PRK05124 cysN sulfate adenylyl 99.8 9.6E-19 2.1E-23 132.5 13.0 152 14-169 24-216 (474)
242 PRK05506 bifunctional sulfate 99.8 7.1E-19 1.5E-23 138.0 11.9 160 5-168 12-211 (632)
243 KOG0462 Elongation factor-type 99.8 2.8E-18 6.1E-23 127.2 13.8 160 15-181 58-238 (650)
244 COG2262 HflX GTPases [General 99.8 7.2E-18 1.6E-22 121.7 14.7 157 14-179 189-357 (411)
245 TIGR00484 EF-G translation elo 99.8 5.9E-18 1.3E-22 133.9 15.7 116 13-133 6-142 (689)
246 TIGR02034 CysN sulfate adenyly 99.8 2E-18 4.2E-23 128.9 11.9 147 18-168 1-187 (406)
247 PF01926 MMR_HSR1: 50S ribosom 99.8 6.4E-18 1.4E-22 105.5 12.3 103 19-127 1-116 (116)
248 PTZ00141 elongation factor 1- 99.8 2.8E-18 6E-23 129.1 11.9 151 14-168 4-203 (446)
249 PF09439 SRPRB: Signal recogni 99.8 7.5E-19 1.6E-23 115.8 6.9 127 16-143 2-137 (181)
250 KOG4423 GTP-binding protein-li 99.8 2.2E-20 4.7E-25 120.4 -0.7 160 15-178 23-194 (229)
251 TIGR00503 prfC peptide chain r 99.8 2.8E-17 6E-22 125.8 15.7 113 15-132 9-146 (527)
252 PLN00043 elongation factor 1-a 99.8 9.2E-18 2E-22 126.3 12.9 150 14-167 4-202 (447)
253 COG1163 DRG Predicted GTPase [ 99.8 5.4E-17 1.2E-21 113.8 15.5 154 15-178 61-289 (365)
254 KOG1707 Predicted Ras related/ 99.8 9.6E-19 2.1E-23 130.5 7.0 163 13-178 5-175 (625)
255 PRK12739 elongation factor G; 99.8 2.6E-17 5.6E-22 130.3 14.8 115 14-133 5-140 (691)
256 KOG1145 Mitochondrial translat 99.8 2.7E-17 5.8E-22 122.2 13.7 155 15-175 151-313 (683)
257 cd01899 Ygr210 Ygr210 subfamil 99.8 3.8E-17 8.2E-22 117.7 14.1 156 20-181 1-272 (318)
258 KOG1191 Mitochondrial GTPase [ 99.8 1.2E-17 2.5E-22 122.7 11.2 162 15-178 266-450 (531)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 2.5E-17 5.4E-22 112.0 12.2 159 18-180 1-186 (196)
260 COG0536 Obg Predicted GTPase [ 99.8 3.4E-17 7.4E-22 115.5 12.9 158 19-180 161-335 (369)
261 PRK00007 elongation factor G; 99.8 4.3E-17 9.3E-22 129.0 14.8 115 14-133 7-142 (693)
262 COG3596 Predicted GTPase [Gene 99.7 2E-17 4.3E-22 113.7 10.4 165 14-181 36-225 (296)
263 KOG0090 Signal recognition par 99.7 7.9E-17 1.7E-21 106.5 11.5 160 17-177 38-238 (238)
264 PRK09866 hypothetical protein; 99.7 3.8E-16 8.2E-21 119.2 16.6 112 61-175 230-350 (741)
265 cd00066 G-alpha G protein alph 99.7 3.3E-16 7.1E-21 113.4 14.0 133 47-179 147-312 (317)
266 COG5256 TEF1 Translation elong 99.7 1.1E-16 2.5E-21 115.6 11.2 152 14-168 4-201 (428)
267 smart00275 G_alpha G protein a 99.7 3.6E-16 7.8E-21 114.1 13.5 132 48-179 171-335 (342)
268 PRK09602 translation-associate 99.7 6.5E-16 1.4E-20 114.5 14.6 78 18-95 2-113 (396)
269 COG0481 LepA Membrane GTPase L 99.7 2.7E-16 5.8E-21 115.3 12.2 160 15-181 7-189 (603)
270 PRK12740 elongation factor G; 99.7 5.4E-16 1.2E-20 122.8 14.4 106 23-133 1-127 (668)
271 KOG1490 GTP-binding protein CR 99.7 5E-17 1.1E-21 119.6 7.3 172 7-180 156-343 (620)
272 COG1217 TypA Predicted membran 99.7 5.8E-16 1.3E-20 113.3 12.6 159 17-180 5-197 (603)
273 cd01850 CDC_Septin CDC/Septin. 99.7 5.8E-16 1.3E-20 110.0 10.8 112 16-133 3-158 (276)
274 COG4917 EutP Ethanolamine util 99.7 2.7E-16 5.9E-21 95.3 7.0 137 19-175 3-143 (148)
275 PRK13768 GTPase; Provisional 99.7 1.5E-15 3.3E-20 106.8 10.5 119 61-180 97-249 (253)
276 PRK09435 membrane ATPase/prote 99.6 2E-15 4.4E-20 108.9 10.9 153 14-178 53-260 (332)
277 cd01882 BMS1 Bms1. Bms1 is an 99.6 7.2E-15 1.6E-19 101.7 11.7 142 14-164 36-182 (225)
278 KOG0082 G-protein alpha subuni 99.6 5.4E-15 1.2E-19 106.3 10.5 135 45-179 179-345 (354)
279 COG5257 GCD11 Translation init 99.6 1.1E-15 2.4E-20 107.1 6.5 163 15-182 8-206 (415)
280 PF03029 ATP_bind_1: Conserved 99.6 4.9E-15 1.1E-19 103.0 8.2 116 62-177 92-236 (238)
281 PRK14845 translation initiatio 99.6 4.1E-14 8.9E-19 114.7 13.8 143 28-175 472-670 (1049)
282 TIGR00490 aEF-2 translation el 99.6 8.6E-15 1.9E-19 116.4 9.8 121 5-132 9-152 (720)
283 KOG1532 GTPase XAB1, interacts 99.6 3.3E-14 7.2E-19 97.9 11.1 165 11-178 13-264 (366)
284 cd01853 Toc34_like Toc34-like 99.6 6.2E-14 1.3E-18 98.1 12.7 118 14-133 28-164 (249)
285 COG2895 CysN GTPases - Sulfate 99.6 2.3E-14 4.9E-19 101.8 9.6 149 15-167 4-192 (431)
286 PF05049 IIGP: Interferon-indu 99.6 2.1E-14 4.5E-19 104.6 9.5 160 15-181 33-221 (376)
287 PF04548 AIG1: AIG1 family; I 99.6 2.1E-14 4.6E-19 98.6 8.9 159 18-180 1-188 (212)
288 TIGR00991 3a0901s02IAP34 GTP-b 99.6 1.2E-13 2.6E-18 98.2 12.4 117 14-132 35-167 (313)
289 PRK07560 elongation factor EF- 99.6 8E-14 1.7E-18 111.2 12.5 113 14-131 17-152 (731)
290 COG4108 PrfC Peptide chain rel 99.6 1.2E-13 2.5E-18 100.7 12.0 114 15-133 10-148 (528)
291 COG3276 SelB Selenocysteine-sp 99.5 7.4E-14 1.6E-18 101.9 10.6 154 19-177 2-161 (447)
292 KOG0461 Selenocysteine-specifi 99.5 2E-13 4.4E-18 96.9 11.5 163 14-182 4-197 (522)
293 PF03308 ArgK: ArgK protein; 99.5 2.3E-14 5E-19 98.6 6.5 159 4-176 18-228 (266)
294 COG0050 TufB GTPases - transla 99.5 9.1E-14 2E-18 96.6 9.2 164 15-182 10-205 (394)
295 PLN00116 translation elongatio 99.5 7.3E-14 1.6E-18 112.8 10.1 113 14-131 16-163 (843)
296 TIGR00101 ureG urease accessor 99.5 8.9E-13 1.9E-17 89.5 13.6 104 60-178 91-196 (199)
297 PTZ00258 GTP-binding protein; 99.5 4.6E-13 1E-17 98.6 12.7 81 15-95 19-126 (390)
298 PTZ00416 elongation factor 2; 99.5 1.2E-13 2.6E-18 111.3 10.6 113 14-131 16-157 (836)
299 KOG0458 Elongation factor 1 al 99.5 3.4E-13 7.3E-18 101.3 11.5 154 13-168 173-372 (603)
300 COG1703 ArgK Putative periplas 99.5 1E-12 2.2E-17 91.9 11.9 153 14-178 48-254 (323)
301 PF00350 Dynamin_N: Dynamin fa 99.5 6.8E-13 1.5E-17 88.0 9.7 64 61-128 101-168 (168)
302 TIGR00750 lao LAO/AO transport 99.5 6.6E-13 1.4E-17 95.8 10.2 107 59-177 125-237 (300)
303 TIGR00073 hypB hydrogenase acc 99.5 4.8E-13 1E-17 91.7 8.9 151 12-177 17-206 (207)
304 PF00503 G-alpha: G-protein al 99.4 4E-12 8.6E-17 95.0 12.7 130 48-177 222-389 (389)
305 PF00735 Septin: Septin; Inte 99.4 1.4E-12 3.1E-17 92.7 9.5 113 17-135 4-159 (281)
306 PRK09601 GTP-binding protein Y 99.4 6E-12 1.3E-16 91.8 12.5 78 18-95 3-107 (364)
307 KOG1144 Translation initiation 99.4 1.2E-12 2.6E-17 100.9 9.1 156 16-176 474-685 (1064)
308 KOG3905 Dynein light intermedi 99.4 1.1E-11 2.4E-16 87.6 13.1 162 15-178 50-290 (473)
309 TIGR00157 ribosome small subun 99.4 5.5E-12 1.2E-16 88.3 9.5 96 72-175 24-120 (245)
310 KOG0460 Mitochondrial translat 99.4 4.9E-12 1.1E-16 89.8 8.5 163 15-181 52-248 (449)
311 KOG3886 GTP-binding protein [S 99.4 2.9E-12 6.2E-17 86.3 6.8 157 16-175 3-175 (295)
312 COG0480 FusA Translation elong 99.3 1E-11 2.3E-16 97.5 10.5 115 14-133 7-143 (697)
313 PRK10463 hydrogenase nickel in 99.3 1.2E-11 2.7E-16 87.4 9.9 58 118-176 230-287 (290)
314 TIGR02836 spore_IV_A stage IV 99.3 6.3E-11 1.4E-15 86.9 13.6 154 15-177 15-236 (492)
315 smart00010 small_GTPase Small 99.3 4.3E-12 9.3E-17 79.8 6.3 113 18-167 1-115 (124)
316 PF05783 DLIC: Dynein light in 99.3 1.5E-10 3.2E-15 87.5 15.1 162 15-179 23-265 (472)
317 smart00053 DYNc Dynamin, GTPas 99.3 1.7E-10 3.6E-15 80.2 14.1 69 61-133 125-207 (240)
318 TIGR00993 3a0901s04IAP86 chlor 99.3 3.4E-11 7.4E-16 92.9 11.1 117 15-133 116-251 (763)
319 KOG1707 Predicted Ras related/ 99.3 5.5E-11 1.2E-15 89.7 11.0 152 12-176 420-581 (625)
320 COG0378 HypB Ni2+-binding GTPa 99.3 9.9E-12 2.2E-16 81.9 6.2 145 17-177 13-200 (202)
321 KOG1486 GTP-binding protein DR 99.3 3E-10 6.5E-15 77.8 13.2 84 15-98 60-153 (364)
322 KOG3887 Predicted small GTPase 99.3 9.4E-11 2E-15 79.7 10.6 159 18-179 28-203 (347)
323 COG0012 Predicted GTPase, prob 99.3 4.6E-10 1E-14 81.2 14.0 79 17-95 2-108 (372)
324 COG5258 GTPBP1 GTPase [General 99.2 1.2E-10 2.6E-15 84.2 10.5 160 14-179 114-339 (527)
325 cd01900 YchF YchF subfamily. 99.2 1.9E-11 4.2E-16 86.4 6.3 76 20-95 1-103 (274)
326 KOG0410 Predicted GTP binding 99.2 2.3E-11 4.9E-16 85.9 5.7 151 14-178 175-341 (410)
327 cd04178 Nucleostemin_like Nucl 99.2 6E-11 1.3E-15 78.7 7.2 56 14-70 114-171 (172)
328 KOG0085 G protein subunit Galp 99.2 1.8E-11 3.8E-16 82.8 4.6 135 45-179 183-350 (359)
329 COG5019 CDC3 Septin family pro 99.2 3.8E-10 8.3E-15 81.2 10.7 122 15-142 21-186 (373)
330 KOG0705 GTPase-activating prot 99.2 4.1E-11 8.9E-16 89.8 6.0 159 15-178 28-189 (749)
331 KOG2486 Predicted GTPase [Gene 99.2 1.2E-11 2.6E-16 85.6 2.6 161 11-176 130-314 (320)
332 KOG0468 U5 snRNP-specific prot 99.2 1.2E-10 2.6E-15 89.2 7.4 112 14-130 125-261 (971)
333 cd01858 NGP_1 NGP-1. Autoanti 99.1 2.8E-10 6E-15 74.7 7.6 55 15-70 100-156 (157)
334 KOG1954 Endocytosis/signaling 99.1 7.7E-10 1.7E-14 79.7 9.9 114 16-133 57-226 (532)
335 cd01859 MJ1464 MJ1464. This f 99.1 2.5E-10 5.4E-15 74.8 6.8 95 75-179 3-97 (156)
336 cd01855 YqeH YqeH. YqeH is an 99.1 3.3E-10 7.2E-15 76.7 6.7 98 74-178 24-125 (190)
337 KOG2655 Septin family protein 99.1 1.6E-09 3.5E-14 78.5 10.1 115 15-135 19-175 (366)
338 KOG0466 Translation initiation 99.1 4E-11 8.6E-16 84.2 1.7 166 14-182 35-245 (466)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 5.4E-10 1.2E-14 72.0 6.6 52 19-71 85-138 (141)
340 KOG1487 GTP-binding protein DR 99.0 2.2E-09 4.7E-14 73.9 8.9 151 18-178 60-281 (358)
341 KOG0099 G protein subunit Galp 99.0 8.7E-10 1.9E-14 75.9 6.9 84 48-131 189-282 (379)
342 COG1161 Predicted GTPases [Gen 99.0 9.2E-10 2E-14 80.1 6.8 66 5-71 120-187 (322)
343 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.3E-09 5.1E-14 70.3 8.0 91 80-177 4-94 (157)
344 PRK12289 GTPase RsgA; Reviewed 99.0 3.2E-09 6.8E-14 77.9 9.0 89 79-176 84-173 (352)
345 KOG1547 Septin CDC10 and relat 99.0 6.7E-09 1.4E-13 70.8 9.4 131 6-144 38-210 (336)
346 PRK00098 GTPase RsgA; Reviewed 99.0 4.8E-09 1.1E-13 75.7 8.8 86 82-175 78-164 (298)
347 KOG0448 Mitofusin 1 GTPase, in 99.0 1.5E-08 3.2E-13 78.2 11.2 145 13-162 105-310 (749)
348 KOG0467 Translation elongation 98.9 2.2E-09 4.8E-14 83.4 6.8 112 14-130 6-136 (887)
349 TIGR03596 GTPase_YlqF ribosome 98.9 3.2E-09 6.9E-14 75.9 7.2 56 15-71 116-173 (276)
350 PRK09563 rbgA GTPase YlqF; Rev 98.9 3.4E-09 7.3E-14 76.2 7.3 57 15-72 119-177 (287)
351 KOG0463 GTP-binding protein GP 98.9 4.1E-09 8.9E-14 76.3 7.6 155 17-177 133-356 (641)
352 cd01856 YlqF YlqF. Proteins o 98.9 3.8E-09 8.2E-14 70.3 6.6 57 14-71 112-170 (171)
353 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5E-09 1.1E-13 75.3 7.5 86 81-175 75-161 (287)
354 PRK12288 GTPase RsgA; Reviewed 98.9 8.8E-09 1.9E-13 75.6 8.8 88 83-176 119-206 (347)
355 cd01855 YqeH YqeH. YqeH is an 98.9 2.7E-09 5.8E-14 72.3 5.4 54 16-70 126-189 (190)
356 cd01859 MJ1464 MJ1464. This f 98.9 7.7E-09 1.7E-13 67.8 7.0 56 15-70 99-155 (156)
357 cd01849 YlqF_related_GTPase Yl 98.9 1E-08 2.2E-13 67.2 7.5 56 14-70 97-154 (155)
358 KOG1143 Predicted translation 98.9 1.3E-08 2.9E-13 73.6 8.4 157 16-178 166-387 (591)
359 TIGR00092 GTP-binding protein 98.9 1.8E-08 3.9E-13 73.9 8.8 78 18-95 3-108 (368)
360 KOG0465 Mitochondrial elongati 98.8 1.1E-08 2.4E-13 78.0 7.2 113 15-132 37-170 (721)
361 cd01849 YlqF_related_GTPase Yl 98.8 1.5E-08 3.2E-13 66.4 7.0 82 86-176 1-83 (155)
362 KOG0447 Dynamin-like GTP bindi 98.8 8.2E-08 1.8E-12 72.9 11.5 95 61-158 412-521 (980)
363 TIGR03597 GTPase_YqeH ribosome 98.8 7.9E-09 1.7E-13 76.5 5.4 98 71-176 50-151 (360)
364 KOG1491 Predicted GTP-binding 98.8 2.9E-08 6.3E-13 70.9 7.5 81 15-95 18-125 (391)
365 TIGR03596 GTPase_YlqF ribosome 98.8 1.1E-08 2.3E-13 73.3 5.3 92 76-179 13-104 (276)
366 cd01851 GBP Guanylate-binding 98.8 2.4E-07 5.3E-12 64.2 11.5 84 15-98 5-105 (224)
367 COG5192 BMS1 GTP-binding prote 98.8 8.1E-08 1.8E-12 73.2 9.4 141 15-162 67-210 (1077)
368 KOG0459 Polypeptide release fa 98.7 2.8E-08 6.1E-13 72.5 5.8 156 13-171 75-279 (501)
369 cd01856 YlqF YlqF. Proteins o 98.7 4.6E-08 1E-12 65.1 6.2 91 76-178 11-101 (171)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.7E-08 8.1E-13 63.4 5.1 79 79-165 6-84 (141)
371 cd03112 CobW_like The function 98.6 1.9E-07 4E-12 61.3 7.3 21 20-40 3-23 (158)
372 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.1E-07 2.4E-12 68.4 6.5 99 68-178 7-106 (287)
373 PRK12288 GTPase RsgA; Reviewed 98.6 9.9E-08 2.1E-12 70.1 6.1 56 19-75 207-271 (347)
374 PRK12289 GTPase RsgA; Reviewed 98.6 1.1E-07 2.3E-12 70.0 5.8 55 19-74 174-237 (352)
375 KOG0464 Elongation factor G [T 98.6 2.9E-08 6.4E-13 72.9 2.2 120 15-139 35-175 (753)
376 TIGR00157 ribosome small subun 98.5 2.3E-07 4.9E-12 65.3 6.1 56 18-75 121-185 (245)
377 KOG1424 Predicted GTP-binding 98.5 9.6E-08 2.1E-12 71.7 4.3 54 17-70 314-368 (562)
378 PF03193 DUF258: Protein of un 98.5 1.4E-07 3E-12 61.5 4.4 56 18-74 36-100 (161)
379 PRK14974 cell division protein 98.5 7.8E-07 1.7E-11 65.1 8.7 95 60-170 222-322 (336)
380 KOG3859 Septins (P-loop GTPase 98.5 2.5E-07 5.4E-12 64.6 5.8 114 16-134 41-192 (406)
381 TIGR03597 GTPase_YqeH ribosome 98.5 2.2E-07 4.9E-12 68.9 5.4 110 17-132 154-280 (360)
382 PRK13796 GTPase YqeH; Provisio 98.5 2.9E-07 6.4E-12 68.3 5.8 54 17-71 160-220 (365)
383 PRK13796 GTPase YqeH; Provisio 98.5 4.5E-07 9.7E-12 67.4 6.5 88 83-177 67-158 (365)
384 PRK01889 GTPase RsgA; Reviewed 98.5 1.8E-06 3.8E-11 64.0 9.5 84 82-174 110-193 (356)
385 PRK10416 signal recognition pa 98.5 8.1E-07 1.8E-11 64.7 7.6 139 16-170 113-302 (318)
386 TIGR03348 VI_IcmF type VI secr 98.5 2.4E-06 5.2E-11 72.3 11.2 111 20-132 114-257 (1169)
387 TIGR01425 SRP54_euk signal rec 98.4 2.7E-06 5.8E-11 64.0 9.8 110 17-133 100-254 (429)
388 cd03114 ArgK-like The function 98.4 6.8E-07 1.5E-11 58.0 5.7 58 60-129 91-148 (148)
389 KOG2423 Nucleolar GTPase [Gene 98.4 1.7E-07 3.7E-12 68.5 2.7 91 4-98 294-388 (572)
390 COG1618 Predicted nucleotide k 98.4 1.2E-05 2.5E-10 52.0 10.1 147 15-179 3-177 (179)
391 KOG2484 GTPase [General functi 98.4 2.7E-07 5.9E-12 67.3 2.9 56 14-70 249-306 (435)
392 KOG1534 Putative transcription 98.3 6.6E-06 1.4E-10 55.4 8.4 114 60-177 97-250 (273)
393 PRK14722 flhF flagellar biosyn 98.3 3.7E-06 8.1E-11 62.2 7.9 117 15-133 135-296 (374)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.9E-06 4.1E-11 62.1 6.2 57 18-75 162-227 (287)
395 PRK00098 GTPase RsgA; Reviewed 98.3 2.2E-06 4.9E-11 62.0 6.6 57 17-74 164-229 (298)
396 COG1162 Predicted GTPases [Gen 98.3 1.7E-06 3.8E-11 61.6 5.1 57 19-76 166-231 (301)
397 TIGR00064 ftsY signal recognit 98.3 3.7E-06 8E-11 60.0 6.5 95 59-170 153-260 (272)
398 cd03115 SRP The signal recogni 98.1 4.7E-05 1E-09 50.7 9.9 67 60-133 82-154 (173)
399 PF00448 SRP54: SRP54-type pro 98.1 1.1E-05 2.4E-10 54.8 6.8 67 60-133 83-155 (196)
400 COG1419 FlhF Flagellar GTP-bin 98.1 9.5E-06 2.1E-10 60.1 6.8 110 16-132 202-352 (407)
401 PRK11889 flhF flagellar biosyn 98.1 9.4E-06 2E-10 60.3 6.5 111 16-133 240-392 (436)
402 PRK13695 putative NTPase; Prov 98.1 0.00014 3E-09 48.6 11.6 22 18-39 1-22 (174)
403 PRK11537 putative GTP-binding 98.1 3.4E-05 7.4E-10 56.3 8.7 66 61-133 91-165 (318)
404 PRK12727 flagellar biosynthesi 98.1 1E-05 2.2E-10 62.3 6.2 110 15-132 348-498 (559)
405 KOG2485 Conserved ATP/GTP bind 98.1 7.2E-06 1.6E-10 58.4 4.8 58 14-71 140-206 (335)
406 PF06858 NOG1: Nucleolar GTP-b 98.1 2.1E-05 4.6E-10 41.6 5.4 44 84-129 13-58 (58)
407 PF02492 cobW: CobW/HypB/UreG, 98.0 2.1E-06 4.5E-11 57.5 1.8 68 60-133 84-156 (178)
408 PF09547 Spore_IV_A: Stage IV 98.0 0.00021 4.5E-09 53.5 11.9 24 15-38 15-38 (492)
409 PRK00771 signal recognition pa 98.0 2.3E-05 5E-10 59.4 6.7 110 16-132 94-246 (437)
410 PRK14721 flhF flagellar biosyn 98.0 2.9E-05 6.3E-10 58.5 6.8 111 16-133 190-341 (420)
411 COG0523 Putative GTPases (G3E 98.0 0.0002 4.3E-09 52.3 10.9 100 61-170 85-193 (323)
412 COG3523 IcmF Type VI protein s 98.0 7E-05 1.5E-09 62.7 9.4 111 20-132 128-270 (1188)
413 cd01983 Fer4_NifH The Fer4_Nif 98.0 9E-05 1.9E-09 44.1 7.8 97 20-126 2-99 (99)
414 PF03266 NTPase_1: NTPase; In 98.0 4.9E-05 1.1E-09 50.4 7.0 22 19-40 1-22 (168)
415 PRK12726 flagellar biosynthesi 98.0 2.9E-05 6.4E-10 57.5 6.4 111 16-133 205-357 (407)
416 PRK05703 flhF flagellar biosyn 97.9 4.9E-05 1.1E-09 57.7 7.6 67 59-132 298-371 (424)
417 COG1162 Predicted GTPases [Gen 97.9 0.00011 2.4E-09 52.6 8.3 90 81-176 76-165 (301)
418 KOG0780 Signal recognition par 97.9 2.9E-05 6.4E-10 57.0 5.4 109 15-130 99-252 (483)
419 COG3640 CooC CO dehydrogenase 97.9 3.8E-05 8.1E-10 52.8 5.5 64 61-131 134-198 (255)
420 PRK06995 flhF flagellar biosyn 97.9 4.7E-05 1E-09 58.3 6.3 23 17-39 256-278 (484)
421 TIGR02475 CobW cobalamin biosy 97.9 0.00014 3.1E-09 53.7 8.6 21 20-40 7-27 (341)
422 cd00009 AAA The AAA+ (ATPases 97.8 0.00042 9E-09 44.3 9.9 34 8-41 10-43 (151)
423 COG0541 Ffh Signal recognition 97.8 6.4E-05 1.4E-09 56.1 6.2 110 15-131 98-252 (451)
424 PRK12723 flagellar biosynthesi 97.8 8.5E-05 1.8E-09 55.6 6.9 110 17-133 174-327 (388)
425 KOG1533 Predicted GTPase [Gene 97.8 2.8E-05 6E-10 53.4 4.0 71 60-133 96-178 (290)
426 PRK12724 flagellar biosynthesi 97.8 9.6E-05 2.1E-09 55.6 7.0 110 17-133 223-374 (432)
427 PRK10867 signal recognition pa 97.8 8.1E-05 1.8E-09 56.5 6.6 66 60-132 183-254 (433)
428 TIGR00959 ffh signal recogniti 97.8 0.00016 3.5E-09 54.8 8.0 65 60-131 182-252 (428)
429 PF13207 AAA_17: AAA domain; P 97.8 2.5E-05 5.4E-10 48.7 3.2 22 19-40 1-22 (121)
430 PRK14723 flhF flagellar biosyn 97.8 7.3E-05 1.6E-09 60.1 6.4 113 17-133 185-338 (767)
431 PRK06731 flhF flagellar biosyn 97.8 0.0001 2.2E-09 52.5 6.1 111 16-133 74-226 (270)
432 cd04178 Nucleostemin_like Nucl 97.7 3.5E-05 7.6E-10 51.3 3.4 45 86-133 1-45 (172)
433 cd03111 CpaE_like This protein 97.7 0.00021 4.6E-09 43.6 6.6 99 21-127 3-106 (106)
434 PRK08118 topology modulation p 97.7 3.7E-05 8.1E-10 50.9 3.2 22 19-40 3-24 (167)
435 PRK07261 topology modulation p 97.7 3.9E-05 8.4E-10 51.1 3.2 22 19-40 2-23 (171)
436 COG0563 Adk Adenylate kinase a 97.7 3.5E-05 7.7E-10 51.5 2.7 22 19-40 2-23 (178)
437 PF13555 AAA_29: P-loop contai 97.7 5.6E-05 1.2E-09 41.0 3.0 20 19-38 25-44 (62)
438 KOG0469 Elongation factor 2 [T 97.6 0.00011 2.4E-09 55.9 5.1 111 15-130 17-162 (842)
439 COG0552 FtsY Signal recognitio 97.6 0.00026 5.7E-09 51.2 6.8 111 15-132 137-298 (340)
440 COG1116 TauB ABC-type nitrate/ 97.6 5E-05 1.1E-09 52.7 3.0 23 19-41 31-53 (248)
441 PRK10751 molybdopterin-guanine 97.6 0.00016 3.5E-09 47.9 5.1 23 18-40 7-29 (173)
442 PF13521 AAA_28: AAA domain; P 97.6 4E-05 8.6E-10 50.6 2.2 22 19-40 1-22 (163)
443 PF13671 AAA_33: AAA domain; P 97.6 6.8E-05 1.5E-09 48.2 3.0 21 20-40 2-22 (143)
444 PHA00729 NTP-binding motif con 97.6 0.00014 3E-09 50.2 4.6 37 4-40 4-40 (226)
445 cd02019 NK Nucleoside/nucleoti 97.6 8.2E-05 1.8E-09 41.6 2.9 21 20-40 2-22 (69)
446 PF00005 ABC_tran: ABC transpo 97.6 7.8E-05 1.7E-09 47.6 3.1 25 17-41 11-35 (137)
447 PF05621 TniB: Bacterial TniB 97.5 0.00074 1.6E-08 48.6 7.9 113 7-128 51-190 (302)
448 COG1136 SalX ABC-type antimicr 97.5 8.3E-05 1.8E-09 51.3 3.0 24 17-40 31-54 (226)
449 COG1126 GlnQ ABC-type polar am 97.5 8.6E-05 1.9E-09 50.5 3.0 26 16-41 27-52 (240)
450 cd02042 ParA ParA and ParB of 97.5 0.00053 1.1E-08 41.5 6.2 79 20-106 2-82 (104)
451 TIGR00235 udk uridine kinase. 97.5 0.00011 2.5E-09 50.4 3.4 25 15-39 4-28 (207)
452 cd00071 GMPK Guanosine monopho 97.5 0.00016 3.4E-09 46.3 3.8 21 20-40 2-22 (137)
453 PRK01889 GTPase RsgA; Reviewed 97.5 0.00012 2.5E-09 54.5 3.5 26 17-42 195-220 (356)
454 cd03116 MobB Molybdenum is an 97.5 9.2E-05 2E-09 48.6 2.6 48 19-72 3-50 (159)
455 cd02038 FleN-like FleN is a me 97.5 0.00072 1.6E-08 43.4 6.6 97 22-130 5-109 (139)
456 PF00004 AAA: ATPase family as 97.5 0.00013 2.8E-09 46.0 3.1 21 20-40 1-21 (132)
457 TIGR00554 panK_bact pantothena 97.4 0.0002 4.4E-09 51.5 4.3 32 7-38 52-83 (290)
458 PRK05439 pantothenate kinase; 97.4 0.00022 4.7E-09 51.8 4.4 35 5-39 74-108 (311)
459 PRK05480 uridine/cytidine kina 97.4 0.00015 3.3E-09 49.8 3.5 26 15-40 4-29 (209)
460 cd01130 VirB11-like_ATPase Typ 97.4 0.00023 5E-09 48.1 4.2 33 8-41 17-49 (186)
461 PRK14738 gmk guanylate kinase; 97.4 0.00019 4.1E-09 49.3 3.9 26 15-40 11-36 (206)
462 smart00382 AAA ATPases associa 97.4 0.00017 3.7E-09 45.7 3.5 25 18-42 3-27 (148)
463 COG0194 Gmk Guanylate kinase [ 97.4 0.00012 2.5E-09 48.7 2.6 25 17-41 4-28 (191)
464 PF03215 Rad17: Rad17 cell cyc 97.4 0.0026 5.6E-08 49.7 10.2 23 19-41 47-69 (519)
465 KOG0781 Signal recognition par 97.4 0.0045 9.7E-08 47.2 11.0 144 8-158 369-564 (587)
466 PRK14737 gmk guanylate kinase; 97.4 0.00017 3.8E-09 48.6 3.4 25 17-41 4-28 (186)
467 PF13238 AAA_18: AAA domain; P 97.4 0.00014 3.1E-09 45.7 2.9 21 20-40 1-21 (129)
468 PF03205 MobB: Molybdopterin g 97.4 0.00016 3.4E-09 46.5 3.0 22 19-40 2-23 (140)
469 COG3840 ThiQ ABC-type thiamine 97.4 0.00016 3.5E-09 48.0 3.0 26 15-40 23-48 (231)
470 PRK09270 nucleoside triphospha 97.4 0.00029 6.4E-09 49.2 4.4 27 14-40 30-56 (229)
471 PRK06217 hypothetical protein; 97.4 0.00018 4E-09 48.4 3.1 22 19-40 3-24 (183)
472 KOG3347 Predicted nucleotide k 97.4 0.00016 3.5E-09 46.2 2.6 25 15-39 5-29 (176)
473 PF04665 Pox_A32: Poxvirus A32 97.4 0.00016 3.4E-09 50.5 2.7 27 14-40 10-36 (241)
474 PF13191 AAA_16: AAA ATPase do 97.4 0.00025 5.3E-09 47.6 3.6 27 13-39 20-46 (185)
475 PF07728 AAA_5: AAA domain (dy 97.3 0.00021 4.7E-09 45.7 3.1 21 19-39 1-21 (139)
476 cd02023 UMPK Uridine monophosp 97.3 0.00017 3.8E-09 49.1 2.8 21 20-40 2-22 (198)
477 COG3638 ABC-type phosphate/pho 97.3 0.00019 4.1E-09 49.5 2.9 21 19-39 32-52 (258)
478 PRK10078 ribose 1,5-bisphospho 97.3 0.00021 4.6E-09 48.2 3.2 23 19-41 4-26 (186)
479 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00021 4.5E-09 43.4 2.8 22 17-38 15-36 (107)
480 TIGR02322 phosphon_PhnN phosph 97.3 0.00019 4E-09 48.1 2.9 22 19-40 3-24 (179)
481 PRK14530 adenylate kinase; Pro 97.3 0.00021 4.6E-09 49.4 3.2 22 18-39 4-25 (215)
482 COG1120 FepC ABC-type cobalami 97.3 0.0002 4.4E-09 50.4 3.0 23 17-39 28-50 (258)
483 PRK08233 hypothetical protein; 97.3 0.00024 5.3E-09 47.5 3.3 24 17-40 3-26 (182)
484 KOG2484 GTPase [General functi 97.3 0.00028 6E-09 52.1 3.6 67 75-145 137-204 (435)
485 PRK13851 type IV secretion sys 97.3 0.0003 6.5E-09 51.9 3.8 27 15-41 160-186 (344)
486 COG1936 Predicted nucleotide k 97.3 0.00023 5E-09 46.7 2.9 20 19-38 2-21 (180)
487 PRK03839 putative kinase; Prov 97.3 0.00026 5.6E-09 47.5 3.2 22 19-40 2-23 (180)
488 cd03264 ABC_drug_resistance_li 97.3 0.00026 5.6E-09 48.7 3.2 24 17-41 26-49 (211)
489 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00025 5.4E-09 47.4 3.0 27 15-41 23-49 (177)
490 cd02025 PanK Pantothenate kina 97.3 0.00021 4.6E-09 49.5 2.7 21 20-40 2-22 (220)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00028 6E-09 48.8 3.2 26 16-41 29-54 (218)
492 COG1763 MobB Molybdopterin-gua 97.3 0.00032 6.9E-09 45.9 3.2 50 20-75 5-54 (161)
493 PRK13949 shikimate kinase; Pro 97.3 0.00029 6.2E-09 46.8 3.0 22 19-40 3-24 (169)
494 TIGR03263 guanyl_kin guanylate 97.3 0.00028 6.1E-09 47.3 3.0 23 19-41 3-25 (180)
495 TIGR00960 3a0501s02 Type II (G 97.3 0.0003 6.5E-09 48.6 3.2 26 16-41 28-53 (216)
496 COG3839 MalK ABC-type sugar tr 97.2 0.00027 5.8E-09 51.8 3.0 23 19-41 31-53 (338)
497 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00031 6.8E-09 48.3 3.3 26 16-41 26-51 (211)
498 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00031 6.8E-09 48.1 3.2 26 16-41 25-50 (205)
499 TIGR01166 cbiO cobalt transpor 97.2 0.00029 6.3E-09 47.7 3.0 26 16-41 17-42 (190)
500 cd03261 ABC_Org_Solvent_Resist 97.2 0.00031 6.8E-09 49.2 3.3 26 16-41 25-50 (235)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.1e-37 Score=209.03 Aligned_cols=179 Identities=59% Similarity=1.105 Sum_probs=153.9
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||++++..+++.+..+.+||+++|.+|+|||||++++..+.+....||.+.+...+......+.+||+||++.+...+..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78888888887787888999999999999999999999887777778888888778888899999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++|+|+|+++++++.....++..++......+.|+++++||+|+.+....+++...++........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999888888888776544467899999999999776666666666654433345567889999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|++++|++|.+.+..
T Consensus 161 ~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.9e-37 Score=208.18 Aligned_cols=179 Identities=58% Similarity=1.053 Sum_probs=154.1
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||.+++..+++.+.++.+||+++|++|+|||||++++..+.+....||.+.+...+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 78888899998888889999999999999999999998887777778888877777788899999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++|+|+|++++.++.....++..++......+.|+++|+||.|+.+.....++...+.........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999988888888766544457899999999999765556666666665444455677889999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++|++|.+.+..
T Consensus 161 ~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.1e-36 Score=199.98 Aligned_cols=163 Identities=56% Similarity=1.083 Sum_probs=139.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+.++|+++|++|+|||||++++..+.+....||.+.....+.+....+.+|||||++.+...+..+++++|++++|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 44677999999999999999999998887777778888777777778899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....++.+++......+.|+++|+||+|+.+....+++....+........++++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999888888876654467899999999999765566677666654444455678999999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=5.5e-36 Score=200.08 Aligned_cols=166 Identities=63% Similarity=1.123 Sum_probs=142.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+.+.+||+++|++|+|||||++++..+.+....||++.....+.+....+.+|||||++.+...+..+++++|++++|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44667999999999999999999998777766778888877777788899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....++..++......+.|+++|+||+|+.+.....++...+.........+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999988876544457899999999999765556666666665545556677889999999999999999
Q ss_pred HHHHHh
Q 030120 173 LSNTLK 178 (182)
Q Consensus 173 i~~~~~ 178 (182)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 987653
No 5
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-37 Score=198.20 Aligned_cols=161 Identities=24% Similarity=0.363 Sum_probs=135.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.+||+++|+.|+|||+|+.+|....|.+ +..|++++. ..+.+ +..++++|||+||++++....+|++++|+||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 678999999999999999999999999988 888888554 44444 5578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE-EEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 168 (182)
+|||+++.+||+.+..|+.++-+... .++|.++|+||+|+.+. ..+....+...+...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999976654 67899999999999654 233333333344455666 99999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
.|..|...+..
T Consensus 163 ~F~~la~~lk~ 173 (205)
T KOG0084|consen 163 AFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-36 Score=194.52 Aligned_cols=165 Identities=21% Similarity=0.331 Sum_probs=145.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
..+-+.+|++++|+.++||||||+++....|.. +.+|++++. ..+.+ ..+++++|||+||++++.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 345567999999999999999999999999887 888888654 44444 4588899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|||+++..||+...+|+.++..+.+..++.+++|+||.||.+. .++..+++...++..+..|+++||+.|+||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999999988777999999999999765 566666666677777888999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|..|...++.
T Consensus 174 k~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 174 KQLFRRIAAALPG 186 (221)
T ss_pred HHHHHHHHHhccC
Confidence 9999999887764
No 7
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-36 Score=193.48 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=136.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++++|+.++|||||+-++..+.|.+ ..||++.. ...+...+ .++.+|||+|++++..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457899999999999999999999999998 68899844 44444544 78889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.+||.....|+.++-.... ++.-+.+|+||+|+.+. .++........+...+..++++||++|.|++++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999966654 77888889999999762 233333333344556778999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|..|.+.++..
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999998864
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=6.5e-35 Score=192.10 Aligned_cols=158 Identities=62% Similarity=1.120 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++..+.+....||.+.+...+.+....+.+|||||++.+...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888777777888887777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....++..++......+.|+++++||+|+.+.....++.............+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999888888876544456899999999999755445555555544444455677899999999999999999864
No 9
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=1.1e-34 Score=193.75 Aligned_cols=172 Identities=51% Similarity=0.932 Sum_probs=145.3
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
++.++++..+..+.++|+++|++|+|||||++++.++.+....||.+.+...+.+....+.+||+||++.+...+..+++
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 81 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT 81 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence 35667777766678999999999999999999999888877778888888888888999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|+++++++.....++..++......+.|+++++||+|+......+++.+.+.........++++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999999999999888888888887776554467999999999999765455666666654444455678999999999
Q ss_pred CCHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSN 175 (182)
Q Consensus 164 ~~v~~l~~~i~~ 175 (182)
.|++++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
No 10
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=5.7e-34 Score=190.02 Aligned_cols=173 Identities=50% Similarity=0.928 Sum_probs=156.3
Q ss_pred HHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 5 FSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|++.+++... ++.++|+++|..|+||||+++++..+......||.+++...+.+.+..+.+||.+|+..++..|..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3556666654 899999999999999999999999888878999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-CCceEEEEecCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (182)
.+|++|||+|.++.+++......+..++......+.|+++++||.|+.+.....++...+...... ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999887766789999999999998877888888887766554 6788999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
|+|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
No 11
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=4.1e-34 Score=190.88 Aligned_cols=163 Identities=52% Similarity=0.947 Sum_probs=138.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.....++|+++|++|+|||||++++.++.+....+|.++....+.++...+.+|||||++.+...+..+++.+|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 45677999999999999999999999887766778888777777788899999999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..++......+.|+++|+||+|+.+....+++...++........++++++||++|.|++++|++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999888888888876544467999999999999765555666665554433456788999999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
+.+
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=7.1e-34 Score=189.00 Aligned_cols=162 Identities=52% Similarity=0.935 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999987777778888777777888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++.....|+..+.......+.|+++|+||+|+.+....+++......... ....+.++++||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999998876654456899999999999765555555555432221 12345788999999999999999999887
Q ss_pred hcC
Q 030120 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 765
No 13
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=2.7e-33 Score=184.32 Aligned_cols=157 Identities=78% Similarity=1.289 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|+|||||++++..+.+....||.+.+...+.+.+..+++|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887777777887777777778899999999999999999999999999999999999987
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+++.....+.|+++|+||+|+.+.....++...+........+.+++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 77776777776655444457999999999999765445566555544333445578999999999999999999875
No 14
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.6e-33 Score=187.35 Aligned_cols=172 Identities=38% Similarity=0.621 Sum_probs=143.5
Q ss_pred HHHHhhhh-cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 5 FSRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~-~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|.++++.. ..++.++|+++|.+|+|||||++++.++.+....||.+.....+.+.+.++.+||+||++.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 45566633 22788999999999999999999999987766667777777777788899999999999999889999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-------cCCceEEE
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-------KNRQWAIF 156 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 156 (182)
.+|++++|+|++++.++.....++..++......+.|+++|+||+|+......+++.+.+..... ....+.++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 99999999999999888888888888776544467899999999999766667777777754432 22567899
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q 030120 157 KTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~ 176 (182)
++||+++.|+++++++|.++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999865
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.6e-33 Score=191.20 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|+++|+.|+|||||++++..+.+.. +.+|.+.. ...+.+++ ..+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999998877 56666543 34555654 78899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-CCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++++++.+..|+..+.. ....+.|+++|+||+|+.+... +........+. ..++.+++|||++|.|++++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDRE---ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECcccccccc---cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 99999999999988876543 3335799999999999954221 11111111111 1246799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987654
No 16
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-33 Score=180.45 Aligned_cols=180 Identities=62% Similarity=1.128 Sum_probs=170.6
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++..++.+..+|+++|--++||||++.++...++....||++++.+.+.+.+..+.+||..|++.++..|+.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 88999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+++.+++|||+|.++.+++......+..++......+.|+++..||-|+...-...++.+.+.........+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999988877678999999999999988888999999998888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+|+|+.+.++++.+.+...
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999987653
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-33 Score=189.79 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|..|+|||||+.++..+.+.. ..++.+... ..+.+++ ..+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999887765 445555433 3444444 77889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.. ..++.. ..++..+++++++||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-----~~a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-----AYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-----HHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988885542 579999999999996421 222222 2223345789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.3e-33 Score=186.92 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=126.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|.+|+|||||++++.++.+.. ..||.+.... .+...+ ..+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999998876 6667664332 344444 67889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... +........++..++++++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ---VTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999988776665443335799999999999854321 1111111222344678999999999999999999
Q ss_pred HHHHHhc
Q 030120 173 LSNTLKS 179 (182)
Q Consensus 173 i~~~~~~ 179 (182)
+.+.+.+
T Consensus 159 l~~~~~~ 165 (172)
T cd04141 159 LVREIRR 165 (172)
T ss_pred HHHHHHH
Confidence 9987664
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.2e-33 Score=191.64 Aligned_cols=160 Identities=22% Similarity=0.289 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++.++.+....+|++.......+....+.+|||||++.+...+..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777787766655556678899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----------------HHHHHHHhCccccc------------
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAVSEALELHKIK------------ 149 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~~~~~~~~~~~------------ 149 (182)
+++..+..|+..+... ...+.|+++|+||+|+.+... ...+........++
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999998887654 235689999999999964100 01111111111111
Q ss_pred --CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 150 --NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 --~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+++++|||++|.||+++|..+.+.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 12367999999999999999999997654
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8e-34 Score=177.83 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=142.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccc-cc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPT-IG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t-~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|.+|+|||||+.+|....|.+..|+ ++ +....+.+ ...++.+|||+|+++++.+.+.|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999999885554 55 44555555 5678899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++..++|..+..|+.++-....+++...++|+||+|... ...+...+....++..++-++++||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999998887778888899999999643 3566667777777888889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030120 170 MDWLSNTLKSGG 181 (182)
Q Consensus 170 ~~~i~~~~~~~~ 181 (182)
|+.+.+++.+.+
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999987654
No 21
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=1.9e-32 Score=180.29 Aligned_cols=157 Identities=63% Similarity=1.077 Sum_probs=137.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|+|||||++++.+..+....+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998766888888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+.......+.|+++|+||+|+......+++.+.+.........++++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999888888877655568999999999999876666677666655434456789999999999999999999875
No 22
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=181.52 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=139.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|+.++|+.|+|||+|+.++..+.|.+ ...|+++.. ..+.+ ...++++|||+|++.+.....+|++.+-++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 567899999999999999999999999988 666777543 33444 5688899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.++|..+..|+.++.+.. .++..+++++||+|+... +++..++.+.+++..+..++++||++++|+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999996653 478999999999999654 467777777777888889999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|......+.
T Consensus 160 F~nta~~Iy 168 (216)
T KOG0098|consen 160 FINTAKEIY 168 (216)
T ss_pred HHHHHHHHH
Confidence 988776654
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.7e-33 Score=184.93 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||+.++..+.+.. +.||.+.... .+.. ...++.+|||+|++.+..++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 589999999999999999999999876 7777764332 3333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-------HHHHHHhCcccccCCce-EEEEecCCCCC
Q 030120 94 SSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD-------AAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
++++.||..+ ..|+..+.... .+.|+++|+||+|+.+.... ..+........+...+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57887775432 47999999999999643110 01111122222233344 69999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030120 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
||+++|+.+.+.+.+.
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999977554
No 24
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.4e-32 Score=181.11 Aligned_cols=157 Identities=18% Similarity=0.315 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++..+.+.. ..+|.+.......+ ....+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999887765 66777655544433 3478899999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+..... +.|+++|+||+|+.+.....+..+ ......++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888866542 799999999999964332222211 11235677999999999999999999
Q ss_pred HHHHHhcCC
Q 030120 173 LSNTLKSGG 181 (182)
Q Consensus 173 i~~~~~~~~ 181 (182)
|.+.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999887654
No 25
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=2.1e-32 Score=180.79 Aligned_cols=157 Identities=41% Similarity=0.771 Sum_probs=127.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-cc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+|+++|++|+|||||++++.+..+ .. ..||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 33 6778887766677788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 97 TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+.++.....|+..+..... ..+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9888888778777765422 24799999999999976544555555554333233456799999999999999999986
Q ss_pred H
Q 030120 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
No 26
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=4.5e-32 Score=183.64 Aligned_cols=164 Identities=41% Similarity=0.697 Sum_probs=138.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+..+|+++|++|+|||||++++.+..+..+.||.+.....+.+.+.++.+||+||++.+...+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 46789999999999999999999999887777788888888888888999999999999888888999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-----------cCCceEEEEecCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-----------KNRQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (182)
+++..++.....++..+.......+.|+++++||+|+.......++...+..... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999888888888888876555567999999999999766666677666653221 12446799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
|+|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 27
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=3.9e-32 Score=182.72 Aligned_cols=164 Identities=45% Similarity=0.816 Sum_probs=130.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++....+....||.+........ ....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999988887766777655544433 45789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++......... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999888888888777766544457999999999998654444454444432221 223467999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 28
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=183.51 Aligned_cols=163 Identities=23% Similarity=0.328 Sum_probs=137.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+.+..+|++++|++|+|||+++.+|..+.+.. ..+|+++.. ..+.. ....+++|||+||++++.....|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45788999999999999999999999999887 666777554 44555 45788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+++|||+++..||+....|+..+- .....++|.++|+||+|+.+. ..+...-.+..+...++.++++||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999777764 444468999999999999753 3444444445556678899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+.|-.+.+.+.+
T Consensus 164 eaF~~La~~i~~ 175 (207)
T KOG0078|consen 164 EAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHh
Confidence 999999987763
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=9.1e-33 Score=183.26 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=124.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+... ..+... ..++.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999998877 455655443 234443 45789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.+++....|+..+... ..++.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 23578999999999996542 22222222 1234568999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 30
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=179.48 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=132.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...-+||.++|++|+|||||+|++.+++|.. +..|++.. ...+.+ .-+.+++|||+|+++++.+...+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3556899999999999999999999999988 88888844 344444 447789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCCceEEEEecCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEEL---KGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|++++.+|+.+..|-.+++....- ..-|.|+++||+|+...... .+....+. ......++|||++|||...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r-~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR-QVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc-eeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887542 23599999999999653211 12222211 1123467899999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
||.+.|..+.....+
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999886554
No 31
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=3.8e-32 Score=179.25 Aligned_cols=157 Identities=45% Similarity=0.872 Sum_probs=129.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|+++|++|+|||||++++.++.+....||.+.....+.. ....+.+|||||++.+...+..++..+|++++|+|+.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777887776666655 457899999999999988899999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc-cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....++..+++.....+.|+++|+||+|+.......++...+... .....+++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 8888888888888765444679999999999997554556665554322 22235678999999999999999999864
No 32
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=8.2e-32 Score=169.26 Aligned_cols=168 Identities=46% Similarity=0.866 Sum_probs=153.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
...+++++|+++|..|+||||++++|.+.......||.+++..+..+++..+.+||.+|+..++..|+.|+..+|++|+|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 34677999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+|.+++.+++.....+...+......+.|++++.||.|+......+++......... +...++++.||+.+|+++.+-+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHH
Confidence 999999999999999888888766678999999999999877777788777765544 7788999999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+|+.+.+.+
T Consensus 171 dWL~~~l~~ 179 (185)
T KOG0073|consen 171 DWLCDDLMS 179 (185)
T ss_pred HHHHHHHHH
Confidence 999988765
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1e-32 Score=185.24 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC------------CEEEEEEECCCCCCCccchh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
++.+||+++|++|+|||||++++.++.+.. ..+|.+.... .+.+. ...+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356899999999999999999999988877 5666654332 23332 36789999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++++|++++|||+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...++++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e 156 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA-----DKYGIPYFE 156 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH-----HHcCCeEEE
Confidence 9999999999999999999999999998887655444578999999999996432 222222221 223467999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.|.+.+.+
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 34
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.8e-32 Score=181.26 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++..+.+.. ..+|.+ .....+..++ ..+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3699999999999999999999888766 555554 2233444444 56788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... ..+.. .+. ...+.+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQ-ALA----RQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHH-HHH----HHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999998888887655446799999999999864321 11111 111 1223689999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998764
No 35
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.1e-32 Score=184.62 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=125.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++..+.+.. +.||.+... ..+.. ....+.+|||+|++.+..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 567899999999999999999999998876 667776433 23333 34678999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCc-eEEEEec
Q 030120 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S 159 (182)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..+ +++++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67777765432 5789999999999854210 00122222223334455 4899999
Q ss_pred CCCCCC-HHHHHHHHHHHH
Q 030120 160 AIKGEG-LFEGMDWLSNTL 177 (182)
Q Consensus 160 a~~~~~-v~~l~~~i~~~~ 177 (182)
|++|.| |+++|+.+++..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 36
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=8.8e-32 Score=178.55 Aligned_cols=157 Identities=37% Similarity=0.608 Sum_probs=132.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++|+|||||++++.++......||.+.....+......+.+||+||++.+...+..+++++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47999999999999999999874444788888887788888999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc---cCCceEEEEecCCCC------CCHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---KNRQWAIFKTCAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~l 169 (182)
++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 99999989888876544467899999999999876666666666543332 234578999999998 899999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
No 37
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=9.3e-33 Score=186.85 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|+.|+|||||+.++..+.+.. +.||.+..+. .+.. ....+.+|||+|++.+..++..+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999999998865 6777764433 2333 3467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccccCCc-eEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|++++.|++.+.. |...+... .++.|+++|+||.|+.+.... ..+.. ......+...+ ++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999974 65555432 257999999999999643211 11111 11111122233 589999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++++|+.+.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987654
No 38
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-31 Score=182.84 Aligned_cols=159 Identities=24% Similarity=0.356 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.+. ..+.+. ...+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988766 667776443 334443 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
||++++.++..+..|+..+.... ...+.|+++|+||+|+.+ .....+..+.... ....+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----NGFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----cCCceEEEEeCCCCCCH
Confidence 99999999999988887765422 235689999999999963 2333343333321 11257999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 39
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2e-32 Score=185.09 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.++.+.. ..||.+.... .+.++ ...+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 346899999999999999999999988765 5666654432 33333 4567899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888765444578999999999985432 22121111 122346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 40
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=9.5e-32 Score=177.84 Aligned_cols=154 Identities=34% Similarity=0.613 Sum_probs=128.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.++.+.. +.||.+.....+...+..+.+||+||++.+...+..+++++|++++|+|.+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999887665 778888777677778899999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCCceEEEEecCCC------CCCHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNRQWAIFKTCAIK------GEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~------~~~v~~l~~ 171 (182)
++.....|+..+.... ++.|+++|+||+|+.......++...... ......+++++++||++ ++||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8888888888876443 57999999999999765555554444432 22345678899999988 999999999
Q ss_pred HHHH
Q 030120 172 WLSN 175 (182)
Q Consensus 172 ~i~~ 175 (182)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8764
No 41
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.5e-32 Score=182.34 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||++++..+.+.. +.||.+.... .+...+ ..+.+|||+|++.+...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 689999999999999999999998865 7777765443 444544 678899999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCHH-HH--------HHHhCcccccCC-ceEEEEecCCC
Q 030120 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDA-AV--------SEALELHKIKNR-QWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~--------~~~~~~~~~~~~-~~~~~~~Sa~~ 162 (182)
+++++++..... |...+... .++.|+++|+||+|+.+..... .+ .........+.. .+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 65555432 2578999999999985431110 00 001111111222 36899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
|.|++++|+.++.+
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.3e-32 Score=180.99 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=124.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|.+|+|||||++++..+.+.. ..+|++... ..+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4789999999999999999999887766 556665332 334444 456779999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++..++.....|+..+.......+.|+++|+||+|+.+... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887655556799999999999964321 1221 111 12234689999999999999999
Q ss_pred HHHHHHHh
Q 030120 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~i~~~~~ 178 (182)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99988653
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.8e-32 Score=181.08 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=124.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998776 6667665433 3443 3478889999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEEL----KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
|++++.++.....|+..+...... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999999888888665432 468999999999996321 222222211 223367999999999999
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=8.1e-32 Score=180.74 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|+.|+|||||++++.++.+.. +.||.+.+. ..+..++ ..+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998877 778887554 3455544 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---HHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|++++.++..+..|+..+..... ...| ++|+||+|+..... ...+. ......+...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888765422 3466 67899999953211 11111 1111222334578999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987765
No 45
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=3.1e-31 Score=177.03 Aligned_cols=163 Identities=51% Similarity=0.895 Sum_probs=137.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+..+.++++++|++|+|||||++++.+..+....+|.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 44568999999999999999999999987766777888887788888899999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|+.+..++.....++..+.......+.|+++++||+|+.+....+++...++........++++++||++|+|++++|++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99998888888878777766544457999999999999766556666666654444445567899999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 875
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.8e-32 Score=180.41 Aligned_cols=158 Identities=22% Similarity=0.337 Sum_probs=126.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..+|.+... ..+.+.+ ..+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999998877 667766543 3444443 578999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877653 23578999999999996432 222222221 22346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+++.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 47
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.2e-31 Score=177.00 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+.+|||||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999988766 55655533 23334443 55788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|+++..++.....|+..+.......+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888887655446789999999999965322 22222221 22345799999999999999999
Q ss_pred HHHHHH
Q 030120 172 WLSNTL 177 (182)
Q Consensus 172 ~i~~~~ 177 (182)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.1e-31 Score=184.83 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=129.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
....+||+++|++|+|||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+...+..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 3678999999999999999999999888876 77787765554433 347899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|||++++.++.....|+..+.... .+.|+++|+||+|+..... .+.+ .. ....+++++++||++|.|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF-----HRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH-----HHhcCCEEEEcCCCCCCCHH
Confidence 99999999999999999988886542 5799999999999854322 2222 11 12345789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|.+|.+.+.+
T Consensus 162 ~~f~~l~~~~~~ 173 (219)
T PLN03071 162 KPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
No 49
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=6.8e-32 Score=179.49 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.++.+.. +.||.+.... .+... ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998876 7777765543 34443 3678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++++++.....|+..+.+.......|+++|+||+|+.+..... .............+.+++++||++|.|++++|+.|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999998888665433457899999999985432211 11111111112234579999999999999999999
Q ss_pred HHHHhcC
Q 030120 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+-
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9877643
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.1e-32 Score=179.47 Aligned_cols=156 Identities=20% Similarity=0.344 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998876 666666433 233333 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+... .....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888877443 234689999999999964321 22222111 2234579999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
No 51
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=5.7e-32 Score=179.06 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.+..+.. ..+|... ....+... ...+.+|||||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988766 4454442 22333343 3678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+++++++.....|+..+.......+.|+++|+||+|+.+.. ......... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999888887665554578999999999996532 222222222 12346899999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
+|.+.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
No 52
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=2.5e-31 Score=176.53 Aligned_cols=157 Identities=40% Similarity=0.745 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-------cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+|+++|++|+|||||++++.+.... ...+|.+.+...+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999764321 246677777778888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+.+++++.....++..+.+.....+.|+++++||+|+.......++...+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887655556799999999999976655555555544332 2234678999999999999999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
No 53
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.9e-32 Score=178.43 Aligned_cols=154 Identities=24% Similarity=0.378 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++.++.+.+ ..+|.+.+. ..+...+ ..+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999998876 677777544 3444444 67889999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+... ...+.|+++|+||.|+.+... ..+....+ .+..+++++++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877543 234689999999999964322 11112222 122346799999999999999999
Q ss_pred HHHHH
Q 030120 172 WLSNT 176 (182)
Q Consensus 172 ~i~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
No 54
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.1e-32 Score=186.68 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.++.|.. +.||++..+. .+.. ....+.+|||+|++.+...+..+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 357899999999999999999999998877 6777764432 2333 34788999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCce-EEEEec
Q 030120 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (182)
|||++++.+|... ..|+..+.... ++.|+++|+||+|+.+... ...+........++..++ .|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777775432 4689999999999854210 011222222233344555 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHhc
Q 030120 160 AIKGE-GLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~-~v~~l~~~i~~~~~~ 179 (182)
|++|. |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99998 899999999887654
No 55
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4e-32 Score=181.53 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4789999999999999999999998876 6677654332 3334 3467889999999999989999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCce-EEEEecCC
Q 030120 93 DSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (182)
|++++.|+..+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777665432 5789999999999854210 001122222233334454 79999999
Q ss_pred CCCC-HHHHHHHHHHHH
Q 030120 162 KGEG-LFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~-v~~l~~~i~~~~ 177 (182)
+|+| ++++|..+.+..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998853
No 56
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.3e-32 Score=184.91 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+.+. ..+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988876 556666443 23333 23678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||++++.++..+..|+..+.........|+++|+||+|+.+.. ..++.. .+ .+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999999888765444567899999999996532 222222 11 123447899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=9.9e-32 Score=177.76 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=122.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++..+.+.. ..+|.. .....+...+ ..+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4789999999999999999999988876 455544 3333444444 46788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... ..+. ... ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RAL----AEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 9999999999999888887654446799999999999854321 1111 111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 58
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.4e-32 Score=182.19 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|.+|+|||||+++|..+.+.. ..+|.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888866 55555533 23334444 4588999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
++..++..+..|+..+..... ..+.|+++|+||+|+.+... ..+.. ......+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-----ALARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-----HHHHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877754432 25689999999999954221 22211 1122334679999999999999999
Q ss_pred HHHHHHHhcC
Q 030120 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~i~~~~~~~ 180 (182)
+++.+.+.+.
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 59
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.3e-31 Score=184.35 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||+++|.+..+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988876 677776443 344442 47889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
||+++++++.....|+..+..... ..+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~-----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF-----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999888887765432 2356899999999996321 11222211 12234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=9.2e-32 Score=178.03 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.+..+.. ..+|.... .......+ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999887765 44555422 22333443 57889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++..++.....|+..+.+.....+.|+++|+||+|+.+... ..+.... ....+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654445789999999999964321 1222111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 61
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-31 Score=161.23 Aligned_cols=179 Identities=55% Similarity=1.047 Sum_probs=169.5
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|++-|++++.+.+..++.+++.+|-.++||||++..+.-+......||++++.+.+.+++..+.+||++|++..+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78889999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+....++|||+|..+.++++..+..+..++......+.|+++..||-|+.+...++++.+.++....+...+.+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999988877778999999999999999999999999998888899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
.+|.|+.+-+.++...+.+
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999886643
No 62
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.9e-32 Score=167.87 Aligned_cols=161 Identities=19% Similarity=0.335 Sum_probs=133.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.-+|++|+|+..+|||||+.++.+..|.+ ..+|.++....-.+ +..++++|||+|++.++...-.+++.++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 456799999999999999999999999888 66777765443332 5588999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|.++.+|++....|...+....+ .+.|+|+++||||+.++. .+..+-....+...++.+|++||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eR---vis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSER---VISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccce---eeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999999999988866544 689999999999996542 22333333334556678999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.+.+.+.+
T Consensus 175 Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 175 FERLVDIICD 184 (193)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.98 E-value=1.9e-31 Score=176.92 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=124.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+|++++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999988766 55665543 33444443 5789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775432 2568999999999985432 222222222 233568999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 64
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.98 E-value=2.3e-31 Score=181.24 Aligned_cols=158 Identities=23% Similarity=0.364 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||++++.++.+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 457899999999999999999999988765 667776443 3344433 57889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999998888775432 4689999999999965322 22222221 2234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+..
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 65
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=2.7e-31 Score=174.42 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||+.++..+.+.. ..|+.+.....+.+++ ..+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888776 3343333344555655 6688999999975 3466889999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.+++.+..|+..+.......+.|+++|+||+|+.... ..++...+..... ....+.+++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999888765444678999999999984311 1122222211111 2235789999999999999999999
Q ss_pred HHH
Q 030120 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.98 E-value=1.9e-31 Score=176.71 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988765 5566553332 2222 44678999999999999888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+++++++.....|+..+.... ...+.|+++|+||+|+.+.... ............+++++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v---~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV---SSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCee---cHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 999999999888876654322 1257899999999999652211 11111111123346799999999999999999
Q ss_pred HHHH
Q 030120 172 WLSN 175 (182)
Q Consensus 172 ~i~~ 175 (182)
+|.+
T Consensus 159 ~l~~ 162 (165)
T cd04140 159 ELLN 162 (165)
T ss_pred HHHh
Confidence 9975
No 67
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.98 E-value=1.3e-30 Score=171.39 Aligned_cols=156 Identities=37% Similarity=0.699 Sum_probs=131.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.+..+.. ..||.+.+...+......+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999998777 777888877777777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+.......+.|+++|+||+|+.+.....++.............++++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888776554467899999999998765444455545443333445678999999999999999999875
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=5e-31 Score=174.02 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.+ ..++.+... ..... ....+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 444444332 22333 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+... .++.|+++|+||+|+.... ..+... .....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-----~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-----FAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-----HHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888888777543 2468999999999984321 111111 11223568999999999999999999
Q ss_pred HHHHHhcC
Q 030120 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887664
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.9e-31 Score=175.88 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=123.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..|+.+... ..+...+ ..+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45799999999999999999999988765 566666433 3444444 578999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999998888775543 2468999999999986432 222222222 12356799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|+.+.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 70
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=3.5e-31 Score=179.00 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.++.+.. +.||.+..+. .+..+ ...+.+|||+|++.+...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999998876 5666654432 23333 3678999999999998888889999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH---------HHhCccccc-CCceEEEEecCCC
Q 030120 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS---------EALELHKIK-NRQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~Sa~~ 162 (182)
++++.++.... .|+..+... ..+.|+++|+||+|+.+.....+.. .......+. ...++++++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999998886 466666433 2478999999999996543221110 011111111 2336899999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030120 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
|.|++++|.++.+.+...
T Consensus 159 ~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 159 NRGVNEAFTEAARVALNV 176 (189)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999877643
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=5e-31 Score=175.20 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=124.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988766 445555433 334443 3678999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888775543 2578999999999996432 222322222 22356799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|..+.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 72
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=3.5e-31 Score=181.71 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=122.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||....+. .+.+ ....+.+|||+|++.+...++.+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3689999999999999999999988876 7777765543 3444 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HH--------HHHHhCcccccCCc-eEEEEecCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
|++++++++.+..+|....... .++.|+++|+||+|+.+.... .. +........++..+ ++|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999965454443332 257999999999999643110 01 11112222233344 4899999999
Q ss_pred CCC-HHHHHHHHHHHHh
Q 030120 163 GEG-LFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~-v~~l~~~i~~~~~ 178 (182)
+.+ |+++|..+.....
T Consensus 160 ~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 160 SERSVRDVFHVATVASL 176 (222)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 985 9999999888654
No 73
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.8e-30 Score=172.87 Aligned_cols=158 Identities=15% Similarity=0.317 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++.++.+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 457899999999999999999999988876 556665443 334443 467789999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC-CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|||+++++++.....|...+..... ..+.|+++|+||+|+.+. ...++..+... ....++++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888887765332 246899999999998642 23333333322 12234799999999999
Q ss_pred HHHHHHHHHHH
Q 030120 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
++++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 74
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=3.8e-31 Score=176.48 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+|++++|++|+|||||+.++..+.+.. +.||..... ..+... ...+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999988766 666665322 233343 367889999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHH--------HhCcccccCCc-eEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|+++++++..... |+..+... .++.|+++|+||+|+.+... .+.... ..........+ ++++++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 65555432 25799999999999954311 111111 11111112223 589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
No 75
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=4.3e-31 Score=174.39 Aligned_cols=154 Identities=19% Similarity=0.336 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999988766 555554333 333443 367889999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+... ..++.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776433 23678999999999996432 2222222221 233789999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=8.6e-31 Score=173.60 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999888766 4455543 334455554 578999999999988888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ......... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999999888888875532 35789999999999964321 122222211 12224689999999999999
Q ss_pred HHHHHHHH
Q 030120 169 GMDWLSNT 176 (182)
Q Consensus 169 l~~~i~~~ 176 (182)
+|+.+.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 77
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.6e-30 Score=176.44 Aligned_cols=159 Identities=20% Similarity=0.160 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccc--------hhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPY--------WRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~--------~~~~~~~ 84 (182)
+||+++|.+|+|||||++++.++.+.. +.||++... ..+.+++ ..+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988876 666665332 3444554 67889999997643211 2345789
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|++++|||++++++++....|+..+.... ...+.|+++|+||+|+.... ..++..... .+..+++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV----RKSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH----HHhcCCcEEEecC
Confidence 999999999999999999988888776543 23578999999999995431 122211111 1234678999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
++|.|++++|+.+.+.+...
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999876654
No 78
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.2e-31 Score=178.07 Aligned_cols=157 Identities=22% Similarity=0.396 Sum_probs=123.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.+..+.. ..+|.+.... .+.+. ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5556654433 34443 36788999999999988888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++.+++.....|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777553 23478999999999995321 222222221 223468999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 79
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=8.5e-31 Score=177.08 Aligned_cols=156 Identities=24% Similarity=0.365 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998876 666766433 344443 357789999999999889999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+.... ..+.|+++|+||+|+.+.. ...+.. .. ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAK-SF----CDSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999888776533 2458999999999986432 122211 11 12234579999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+..
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999987764
No 80
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-31 Score=173.17 Aligned_cols=160 Identities=19% Similarity=0.305 Sum_probs=135.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++-|||+++|++++|||-|+.++...+|.. ..+|+++.... +.+ +..+.++|||+||++++.....|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 678999999999999999999999999887 77788866554 333 5578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++...+|+....|+.++.... .+++++++|+||+||... +.+..+.....+...+..++++||.++.|+++.
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 9999999999999999999986554 368999999999999652 334444444445556678999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|..++..+.
T Consensus 168 F~~~l~~I~ 176 (222)
T KOG0087|consen 168 FERVLTEIY 176 (222)
T ss_pred HHHHHHHHH
Confidence 998887654
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=7.3e-31 Score=174.72 Aligned_cols=158 Identities=25% Similarity=0.398 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCc-cchhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999988765 55666543 33444444 788999999998876 467888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCC---CCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 166 (182)
|+|++++.++.....|...+.......+.|+++|+||+|+..... ..+....+. ....++++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999999888776654446799999999999864322 112222222 22347799999999 8899
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 82
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=5.7e-31 Score=173.91 Aligned_cols=152 Identities=19% Similarity=0.343 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC----CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+.. ..+|.+.... .+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988766 5666665442 23333 4689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|...+.... .+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999888887775432 4789999999999865322 22222222 22345799999999999999
Q ss_pred HHHHHHHH
Q 030120 169 GMDWLSNT 176 (182)
Q Consensus 169 l~~~i~~~ 176 (182)
++++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
No 83
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.2e-30 Score=179.63 Aligned_cols=160 Identities=20% Similarity=0.323 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||+++|.+..+.. ..+|.+.+. ..+.+.+ ..+.+|||||++.+...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 467899999999999999999999988765 667766543 3444443 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|||++++.+++....|+..+.... ..+.|+++|+||+|+..... ..+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988887775432 35789999999999854321 122222222 23457899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+.+.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.2e-30 Score=169.20 Aligned_cols=154 Identities=20% Similarity=0.341 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988765 556665443 333343 367899999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888777665555689999999999996332 233322222 22456899999999999999999
Q ss_pred HHHHH
Q 030120 172 WLSNT 176 (182)
Q Consensus 172 ~i~~~ 176 (182)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
No 85
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.4e-30 Score=171.96 Aligned_cols=154 Identities=20% Similarity=0.360 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988766 55555543 34444444 56899999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.... ...+..... ...+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765432 368999999999995332 122222222 2234779999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 86
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=166.04 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=132.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-++.+|+|++|+|||||+.+|....|.. +..|++.+ ...++. ..++++||||+|++.+..+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34578899999999999999999998887 77777744 445555 55788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|+++++||.....|+.++.... +..|-++|+||.|+.+. +.+....+...+...++.+|++|++.++|++..|
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 999999999999999999996654 47899999999998654 2333333344556677889999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
.-|.+.+..
T Consensus 162 ~cit~qvl~ 170 (198)
T KOG0079|consen 162 HCITKQVLQ 170 (198)
T ss_pred HHHHHHHHH
Confidence 988876653
No 87
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3.3e-30 Score=174.71 Aligned_cols=149 Identities=19% Similarity=0.311 Sum_probs=121.4
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--E--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 23 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|.+|+|||||+++++.+.+.. +.+|++....... + ....+.+|||+|++.+..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888876 6778775554433 3 357889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.++..+..|+..+.+.. .+.|+++|+||+|+.... ..+.. . .....++.+++|||++|.||+++|++|.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999998888886543 479999999999985432 22221 1 123456789999999999999999999987
Q ss_pred Hhc
Q 030120 177 LKS 179 (182)
Q Consensus 177 ~~~ 179 (182)
+.+
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 754
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=177.87 Aligned_cols=161 Identities=20% Similarity=0.327 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.+..+....++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567899999999999999999999988877777766543 334443 3578999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|+++.+++.....++...+.. ....+.|+++|+||+|+..... .++.... ....+++++++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999887655444332 2234679999999999864322 1222111 12335679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887654
No 89
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.6e-30 Score=172.00 Aligned_cols=156 Identities=21% Similarity=0.395 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 555555433 3344444 67899999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.+++....|+..+..... ++.|+++|+||+|+.... ..+...... ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999988888777755432 579999999999986532 222332222 2234679999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+.|.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
No 90
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.3e-29 Score=176.96 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+++++++.+.. +.+|++ .....+.+.+ ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888876 566664 3344455544 678899999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--------ccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEE--------ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++.++++....|+..+.... ...+.|+++|+||+|+.. ....+++..... ....+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~----~~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG----GDENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH----hcCCCEEEEEeCCCC
Confidence 999999999998888876531 224789999999999964 223344433332 123567999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~v~~l~~~i~~~~ 177 (182)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.1e-29 Score=167.99 Aligned_cols=155 Identities=24% Similarity=0.400 Sum_probs=124.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++|++++|++|+|||||++++.++.+.. ..++.+.. ...+.+. ...+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999877 66666633 3344443 46788999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++++++.....|+..+..... .+.|+++++||+|+.+.. ...+...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988888765533 678999999999986322 2222222221 22367999999999999999
Q ss_pred HHHHHHHH
Q 030120 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~i~~~~ 177 (182)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 92
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=7.6e-31 Score=173.33 Aligned_cols=154 Identities=26% Similarity=0.427 Sum_probs=125.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++++|||||++++.++.+.. ..+|.+..... +.. ....+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999998877 66776554443 344 34678999999999998888999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
++++.|+..+..|+..+..... .+.|+++|+||.|+.+ ....++..... ...+.+++++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999998888866543 4689999999999875 22333332222 22337899999999999999999
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 93
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-31 Score=164.13 Aligned_cols=158 Identities=23% Similarity=0.329 Sum_probs=132.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-+||+++|+.|+|||+|++++..+-|++ ...|++.. ...+++ ++.++++|||+|+++++....+|++.+|++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4799999999999999999999999888 77788754 445555 567889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+|++-..+|..+.+|+.++-.... .++--|+|+||+|+.+. .++...............++++||++..|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999999865543 46677999999998654 45555555555555666799999999999999998
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876543
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.7e-29 Score=168.36 Aligned_cols=159 Identities=16% Similarity=0.294 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+... ..+.+.+ ..+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988765 445555333 3344443 56679999999999989999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+.+++++.....|...+..... ..+.|+++|+||+|+..+ ...++...... .....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999988888777776655432 236899999999999732 22333332222 2223679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++++++.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876653
No 95
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=4.4e-30 Score=170.67 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+|++++|++|+|||||++++.++.+.. ..+|.+.. ...+... ...+.+|||||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3689999999999999999999888766 55555533 2334443 368899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|...+.......+.|+++++||.|+.... ..++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 999999999998888877654444679999999999986432 1222221111 1123679999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
No 96
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=5.5e-30 Score=173.83 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 666666433 3455544 5667999999999988888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
||++++.++.....|+..+... ..+.|+++|+||+|+.+... ...+............+++++++||+++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999998888888776543 24689999999999854321 11111100011112334679999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987653
No 97
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=3e-30 Score=170.79 Aligned_cols=154 Identities=22% Similarity=0.317 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+||+++|++|+|||||++++... .+.. +.+|.+... ..+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4544 666666443 23333 3478999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.... .+..... ....+++++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAF----AQANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHH----HHHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888887765442 46899999999999644221 1111111 122346799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
No 98
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.5e-30 Score=173.95 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876 5566554432 23332 457899999999999988999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCC------CHHHHHHHhCcccccCCce-EEEEecCCCCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGAL------DDAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
|+++..+++.... |+..+... .++.|+++|+||+|+.+.. ...+.... ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999988864 55555332 2578999999999986432 11121111 122233 79999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 99
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=160.75 Aligned_cols=160 Identities=21% Similarity=0.315 Sum_probs=133.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.-+|++++|+.|+|||+|+.+|...++.. ...|+++. ...+.+ +.+++++|||+|+++++.....|++.+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 456899999999999999999999998877 55677644 344444 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|+++.++|+.+..|+.+... ...+++-+++++||.|+... .++.-.++..+++.....+.++|+++|+|+++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999988844 34467889999999999644 455555555555666678999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|-...+.+.
T Consensus 163 Fl~c~~tIl 171 (214)
T KOG0086|consen 163 FLKCARTIL 171 (214)
T ss_pred HHHHHHHHH
Confidence 987766553
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=5.7e-30 Score=171.05 Aligned_cols=158 Identities=17% Similarity=0.232 Sum_probs=116.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
|+++|++|+|||||++++.++.+.. +.++..... ..+...+ ..+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988866 555554332 2333333 56899999999999988999999999999999999
Q ss_pred CcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HH--------HHHHhCcccccCCc-eEEEEecCCCCC
Q 030120 96 DTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
+++++..... |+..+.... ++.|+++|+||+|+.+.... .. +............+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 666554332 57999999999999643211 00 11111111122233 479999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.+.+.+..
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987643
No 101
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=5.5e-30 Score=158.30 Aligned_cols=167 Identities=35% Similarity=0.660 Sum_probs=155.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+..+.++|-.++|||||+|.+..+.+.+ ..||.+++...++-....+.+||.||+..++.+|..|++.+++++||+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 678899999999999999999999988877 8899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+.+++.....+..+..++......++|+++.+||.|+.+.-....+.+.+.........+.+|.+||++..|++.+.+++
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999998888899999999999999888888888888888778888999999999999999999999
Q ss_pred HHHHhcCC
Q 030120 174 SNTLKSGG 181 (182)
Q Consensus 174 ~~~~~~~~ 181 (182)
.++....+
T Consensus 178 i~hsk~~~ 185 (186)
T KOG0075|consen 178 IEHSKSLR 185 (186)
T ss_pred HHHhhhhc
Confidence 99866543
No 102
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.3e-29 Score=166.44 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++....+.. ..+++.... ..... ....+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888766 455544332 22333 34678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+.++.++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877654467999999999999652 1222222211 12345799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987753
No 103
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=8.8e-30 Score=170.15 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. ..++.... ...+...+ ..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988876 55555422 22334433 557899999999999889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-H--------HHHhCcccccCCc-eEEEEecCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
+.++.++......+...+... .++.|+++|+||+|+.+...... + ............+ .+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988865444433333 46799999999999854321111 0 0011111111222 46999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~v~~l~~~i~~~~ 177 (182)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.4e-29 Score=166.84 Aligned_cols=160 Identities=13% Similarity=0.171 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccce-eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+|++++|++|+|||||++++.++.+....+++... .....+ ...++.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886643332211 122222 557889999999988877778888999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc-eEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ-WAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.++.....+|...++... .+.|+++|+||+|+.+.................... .+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999887654444444332 478999999999996543321111111000001111 369999999999999999999
Q ss_pred HHHHh
Q 030120 174 SNTLK 178 (182)
Q Consensus 174 ~~~~~ 178 (182)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01893 160 QKAVL 164 (166)
T ss_pred HHHhc
Confidence 88764
No 105
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=163.46 Aligned_cols=160 Identities=23% Similarity=0.373 Sum_probs=136.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..++++++|++-+|||||++.+..+++.+ ..||.+.+. ..++. ...++++|||+|+++++....+|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 56899999999999999999999999998 788888543 22333 4578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|.++..||+....|+++.......+.+ -..+|++|+|+... .++..++++..+...++.++++||++|.||++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999888666554554 45789999999643 56677777777788889999999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
.|..+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=174.06 Aligned_cols=159 Identities=18% Similarity=0.266 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999999988766 556666443 3344433 56789999999999888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887765432 2578999999999996432 222222222 2235689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|.++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 107
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=7.7e-30 Score=170.27 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||++++.++.+.. +.+|.. .....+..+ ...+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888776 444442 212233343 3677899999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCc-eEEEEecCCC
Q 030120 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++.++.... .|+..+... ..+.|+++|+||+|+.+... ...+............+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999998875 455555432 24689999999999864321 00111111111112223 4799999999
Q ss_pred CCCHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSN 175 (182)
Q Consensus 163 ~~~v~~l~~~i~~ 175 (182)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 108
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.4e-29 Score=168.31 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+|++++|++|+|||||++++.++.+. . +.||.+... ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999886 4 677776443 3444544 6788999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCce-EEEEecCCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++|+|++++.++.....|+..+... .+.|+++|+||+|+.+... ..+.. .+. ...++ .++++||+++.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPD-EFC----RKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHH-HHH----HHcCCCCCEEEEeccCcc
Confidence 9999999998888887777655222 3689999999999854321 11111 111 11112 368999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030120 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|+.+.+.+..
T Consensus 154 v~~lf~~l~~~~~~ 167 (169)
T cd01892 154 SNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999987654
No 109
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.6e-29 Score=166.92 Aligned_cols=154 Identities=23% Similarity=0.320 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++... ....+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988765 4444432 23334433 357899999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.... ...++.... ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888888777755433 378999999999986432 222332222 2235678999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998764
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1e-29 Score=168.51 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCC-CccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||+++++.+.+.. +.++... ....+... ...+.+|||||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999887765 4455432 22333343 35688999999985 34456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC-CHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE-GLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 169 (182)
++++.+++....|+..+..... ..+.|+++|+||+|+.... ...+.... ....+++++++||+++. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888776655332 3579999999999985331 12221111 12234679999999995 99999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|..+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=2.3e-29 Score=173.60 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-cccccc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcC-CCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~-~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+. . ..++.+ .....+.+ ....+.+|||||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 3 555553 34444555 45778999999998 223344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||++++.++.....|+..+.......+.|+++|+||+|+.+... .++.. . .+...+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~----~a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-A----CAVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-H----HHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999888888776544345799999999999854321 11111 1 1122356799999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 112
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.9e-29 Score=168.93 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||+++++++.+.. +.+|.. .....+.+.+ ..+.+||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988776 444443 3444455555 6789999999999988888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..+.......+.|+++|+||+|+................ ....+.+++++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999998888887765554579999999999986421111111111111 112335799999999999999999999
Q ss_pred HHHh
Q 030120 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
No 113
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-29 Score=171.41 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=112.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCc-----cc-ccccccc-e-ee-----------EEEECCEEEEEEECCCCCCCcc
Q 030120 17 EARILVLGLDNAGKTTILY-RLQMGEV-----VS-TIPTIGF-N-VE-----------TVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~-~l~~~~~-----~~-~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.+||+++|++|+|||||+. ++.++.+ .. +.||++. . +. .+......+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5655433 22 5566642 1 11 1112357889999999875 2
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~ 139 (182)
....+++++|++++|||++++.|+..... |+..+.... ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45568899999999999999999999874 666654332 4789999999999864210 1222
Q ss_pred HHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
........++..++++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2333333444566789999999999999999998864
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=8.8e-29 Score=164.55 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++++|++|+|||||++++.++.+.. ..++.+ .....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999877665 555555 3333445544 56889999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|+.++.++.....|+..+... ...+.|+++|+||+|+.+... ..+....+. ....++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999998888888877665432 234689999999999864322 122222221 22236799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|++|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 115
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=2.2e-28 Score=160.67 Aligned_cols=151 Identities=23% Similarity=0.380 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..+|.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998877 46666655544333 3478899999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--CCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP--GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... ...|+++++||+|+. .....++...... ..+.+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99999888888888777765432 468999999999995 2223333333322 246789999999999999999
Q ss_pred HHHH
Q 030120 171 DWLS 174 (182)
Q Consensus 171 ~~i~ 174 (182)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=7.1e-29 Score=166.62 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=124.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. ..|+... ....+...+ ..+.+|||||++.+...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888766 5555543 234444443 567899999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
.++..+++....++..+.......+.|+++|+||+|+.... ...+..... ...+++++++||+++.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999988876655678999999999986422 122221111 22336799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987654
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1e-28 Score=164.47 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+++|.+..+.. ..++.... ...+.. ....+.+||+||++.+......+++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999988744 44444322 222222 34678999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--------HHHHhCcccccCCc-eEEEEecCCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA--------VSEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
++++.++......+...+.... .+.|+++|+||+|+.+...... +............+ .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888777654444333322 4799999999999975533211 11111111112223 389999999999
Q ss_pred CHHHHHHHHHH
Q 030120 165 GLFEGMDWLSN 175 (182)
Q Consensus 165 ~v~~l~~~i~~ 175 (182)
|++++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 118
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=3.8e-28 Score=162.40 Aligned_cols=159 Identities=16% Similarity=0.275 Sum_probs=116.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++.++.+.. +.||..... ..+.+. ...+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988876 656665332 344443 357789999999998888888889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccc-cCCceEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
|+++.+++..... |...+... ..+.|+++|+||+|+.+.... ..+.. ....... .....++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999998888764 44444332 247899999999998643211 11110 0000001 1123479999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~ 177 (182)
+|.|++++|+++.+..
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998753
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.4e-28 Score=162.09 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=120.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||++++.+..+.. ..++... ....+... ...+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887665 4555442 22233344 46789999999999888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
++++++.....++..+.........|+++|+||+|+.+.. ..++...... ..+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999888888776544679999999999997521 1222222221 22267999999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 120
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2e-29 Score=157.90 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=131.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...||++++|...+|||||+-++...+|.. ..+|.. +....+.+ ...++.+|||+|++++..+-+-|++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 567899999999999999999999888766 333333 33333333 5578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.+||+....|..++..-.+ ..+-+++|+||+|+.++ ..+....++..+...+..++++||+.+.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999998866544 56889999999999643 444445555555666777999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.+...+.+
T Consensus 167 Fe~Lt~~MiE 176 (218)
T KOG0088|consen 167 FESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.9e-27 Score=163.81 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=129.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
......+|++++|++|+|||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 445678999999999999999999888777765 77777766655443 4578899999999999888888999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+++..++.....|+..+.... .+.|+++++||+|+.+.....+.... ....++.++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988888776442 46899999999998643222222111 1234567999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030120 167 FEGMDWLSNTLKSGG 181 (182)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (182)
+++|.+|.+.+...+
T Consensus 157 ~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 157 EKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999998876543
No 122
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-28 Score=152.01 Aligned_cols=180 Identities=66% Similarity=1.040 Sum_probs=164.3
Q ss_pred ChhhHHHHhhhhcCC-CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030120 1 MGIMFSRMFSSLFGN-KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|+.-++.+++...++ ...+++++|--|+|||++.-++.-++.....||++++.+.+.+++.++++||..|+..++..|+
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 556677888888766 8999999999999999999999888888899999999999999999999999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.|+.+.|.+|||+|.++.+........+..++.+....+..++++.||.|........++...++....+...+.++.+|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888888888887777889999999999977667788888888877788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|.+|+|++..++|+.+.+.+.
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988654
No 123
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.4e-29 Score=157.77 Aligned_cols=180 Identities=37% Similarity=0.680 Sum_probs=157.7
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC--------cccccccccceeeEEEECCEEEEEEECCCCC
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE--------VVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
|=++++.+++..+....+.++|+|..++|||||+.+.-... .....||.+.+...+.+.+.++.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 55788899999999999999999999999999999884322 1226778899999999999999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNR 151 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 151 (182)
..+++|..|+..+|++||++|++++++++.....+.++...-...+.|+++.+||-|+.+.....++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988877789999999999999877677777766653 223446
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++.++||.+|+||++-..|+...++.+
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 67899999999999999999999998866
No 124
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.9e-27 Score=160.58 Aligned_cols=161 Identities=15% Similarity=0.225 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|++++|++|+|||||++++..+.+.+ ..+|..... ..+...+ ..+.+||++|++.+.......+..+|++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998777655 444443322 2333333 56789999999888777777889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-------HHHHHHhCcccccCCc-eEEEEecCCCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-------AAVSEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
|+++.+++..... |+..+... .++.|+++|+||+|+.+.... ..+.........+..+ ++++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999988874 55555432 246999999999998542110 0000001111112223 47999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030120 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|++++|+.+.+.+..
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987653
No 125
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-29 Score=158.42 Aligned_cols=160 Identities=22% Similarity=0.361 Sum_probs=131.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE-----------CCEEEEEEECCCCCCCccchhhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
.-++.+.+|++|+||||++.++..+.|.. -.+|.++ ..+++.+ ....+++|||+|+++++.+.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34678899999999999999999888877 5556654 4444444 23577899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++.+-+++++||+++..||-..+.|+.++-....-.+..+++++||+|+.+. ..+.+......+...+.|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999988866666677889999999999654 4444444445556678899999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030120 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|+++..+.+.+.+.
T Consensus 165 tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVM 181 (219)
T ss_pred cCcCHHHHHHHHHHHHH
Confidence 99999988888777654
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1e-26 Score=154.42 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~d 86 (182)
+|+++|++|+|||||++++.+..+.. ..+|.+.....+.+.+.++.+|||||+..... ........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 78999999999999999999987643 22344555556666778999999999742110 0111112368
Q ss_pred eEEEEEeCCCcccH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRI--QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.....+... ......++++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE-----EEELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH-----hhhhccCceEEEEecccC
Confidence 99999999987543 44445555553321 3789999999999965422222111 112345679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~v~~l~~~i~~~~ 177 (182)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=9.8e-27 Score=154.81 Aligned_cols=156 Identities=24% Similarity=0.225 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-EEEEEECCCCCC----Cccchh---hhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWR---CYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 87 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+. .+.+|||||+.. ...... ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999998765421 22344445555556665 999999999642 112222 23456999
Q ss_pred EEEEEeCCCc-ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDT-DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++ .++.....|...+.... ...+.|+++|+||+|+.+.....+...... ......+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELL---KELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHH---hhCCCCCEEEEecCCCCC
Confidence 9999999998 77877777766664432 124689999999999965433322221111 111346799999999999
Q ss_pred HHHHHHHHHHHH
Q 030120 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 v~~l~~~i~~~~ 177 (182)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 128
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.6e-26 Score=156.65 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=109.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE-------CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+||+++|++++|||||++++.++.+.. ..+|++... ..+.+ ....+.+|||+|++.+...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998876 667776433 33443 23678999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhcc------------------ccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccc
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEE------------------ELKGAVALIFANKQDLPGAL-DDAAVSEALELHKI 148 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~ 148 (182)
+|+|||++++.|++.+..|+.++.... ...+.|+++|+||+|+.+.. ...+....-....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999998886531 12468999999999996432 11111111111223
Q ss_pred cCCceEEEEecCCCC
Q 030120 149 KNRQWAIFKTCAIKG 163 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~ 163 (182)
...+.+.++.+|++.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 445566777787764
No 129
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=7.1e-27 Score=157.31 Aligned_cols=161 Identities=21% Similarity=0.241 Sum_probs=134.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
...|++++|.+|+|||+|..++.+..|.. +.||++. ....+.. ....+.++||+|++.+..+...++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999988 7888873 3333444 456778999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++..||+....++..+.+.......|+++|+||+|+... ..+........+....++++++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666667899999999999653 23333333333566778899999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99986653
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=2.4e-26 Score=166.30 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCC-------CccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (182)
..|+++|.||||||||++++.+..... ..+|..++...+.+ ...++.+||+||... +...+...+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 479999999999999999998765332 33466677777777 567899999999632 2223444567899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHH-HHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+..... +..... ....+++++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998877888877777664432 12468999999999996542211 111111 12234679999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030120 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~~ 181 (182)
|+++++++|.+.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 315 GLDELLRALWELLEEAR 331 (335)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999887543
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=1.5e-26 Score=153.03 Aligned_cols=153 Identities=22% Similarity=0.168 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---ccc-c--cccccceeeEEEEC-CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE---VVS-T--IPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~---~~~-~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.|+++|++|+|||||+++|.+.. +.. . ..|.+.....+.+. +..+.+|||||++.+......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999998643 221 1 22444444455555 77999999999988877677778899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc--CCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK--NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++... ......+. .+... ...|+++++||+|+.+................. ....+++++||+++.|++++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 99987421 12222222 12221 124899999999996532111111111111111 13568999999999999999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
++.+.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998764
No 132
>PRK15494 era GTPase Era; Provisional
Probab=99.95 E-value=4.5e-26 Score=165.89 Aligned_cols=158 Identities=15% Similarity=0.229 Sum_probs=111.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCC-ccc-------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-RPY-------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~~~ 82 (182)
++..+|+++|.+|+|||||+|+|.+..+.. ..+|.......+..++.++.+|||||.... ... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 566799999999999999999999988753 222334445556678889999999997532 221 12346
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|..+. +.....++...+.. .+.|.++|+||+|+.+. ...+..+.... ......++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 899999999998764 44444344333332 24577889999998643 22233333221 12335799999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030120 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~~ 181 (182)
|.|+++++++|.+.+++++
T Consensus 201 g~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCHHHHHHHHHHhCCCCC
Confidence 9999999999999888754
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=2e-26 Score=154.61 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------ccc-cccc------cc--cee--eEEEE-----CCEEEEEEECCCCCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IG--FNV--ETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~-------~~~-~~~t------~~--~~~--~~~~~-----~~~~~~~~D~~g~~~~~ 75 (182)
+|+++|++++|||||+++|++.. +.. ..++ .+ ... ..+.+ ....+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 111 1111 11 111 11222 45778899999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+..+++.+|++++|+|++++.+......|.. ... .+.|+++|+||+|+.+.. ..+....+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 999999999999999999998766555544432 221 468999999999986432 222222221111 1122358
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||++|.|+++++++|.+.++.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCCC
Confidence 999999999999999999988754
No 134
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.3e-27 Score=143.71 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|-.|+|+-|+|||+|+..+..++|.. ...|++. ....+++ ...++++|||+|+++++....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 456899999999999999999999999877 4445553 3344555 5678899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++...+.+.+..|+.+.. ...+++..+++++||.|+... ..+..++...++...+..++++||++|.|+++.
T Consensus 89 mvyditrrstynhlsswl~dar-~ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 9999999999999999998874 455578899999999999654 233334444445567778999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|-...+.+.+
T Consensus 165 fle~akkiyq 174 (215)
T KOG0097|consen 165 FLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHH
Confidence 8777766553
No 135
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=7.6e-26 Score=160.59 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--ccc-ccc-ceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIP-TIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|+|.+.++.. ..+ |+. .........+.++.+|||||...... ....++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988653 222 222 22222333567899999999754321 1345678999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+. .................+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 999999999876543 233333332 46899999999998632 222222111111112236999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030120 167 FEGMDWLSNTLKSGG 181 (182)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (182)
+++++++.+.+++++
T Consensus 153 ~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 153 SFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999887654
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=4.6e-26 Score=155.86 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=109.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-EEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
+..++|+++|++|+|||||++++.+..+.. ..+|.......+.+.+. .+.+|||||....... ....+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 556899999999999999999999886432 33455555555655444 8999999997432110 11235
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+......|...+ ......+.|+++|+||+|+.+..... . .......+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcCC
Confidence 6899999999999987776655444333 33333568999999999996542211 1 1123455799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
No 137
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=1.6e-25 Score=151.24 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccc-------------------ccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-------------------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||+|++.+....... .+.......+......+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887655421 122233444555788999999999998888888
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH----HHHHhCcccc-------
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA----VSEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~------- 148 (182)
.+++.+|++++|+|+.++.+.. ...++... .. .+.|+++++||+|+........ +.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999998875432 22233222 22 4789999999999975333222 2222222111
Q ss_pred --cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.....+++++||++|.|++++++++.+.+++
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999998864
No 138
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=2.6e-28 Score=148.79 Aligned_cols=155 Identities=22% Similarity=0.361 Sum_probs=123.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccc--ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 21 LVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++|++++|||+|+-++..+.|.. ..+|.+++.. .++. ..+++++|||+||+++++....|++.+|+.++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887777665 5566665543 3444 568899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
.+..||+....|+.++... ....+.+++++||+|+..+ ..+.....+..+...++|++++||++|.|++..|-.|.
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 9999999999999988654 3356889999999999542 12222222333345567899999999999999999998
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 157 ~~l~k 161 (192)
T KOG0083|consen 157 EELKK 161 (192)
T ss_pred HHHHH
Confidence 87764
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=2.5e-25 Score=147.75 Aligned_cols=154 Identities=21% Similarity=0.135 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc---cccccceeeEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+++|.+|+|||||+++|.+..+... ..|.......+... +..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876552 22333333444443 678999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc-----ccCCceEEEEecCCCCCCHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-----IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+++..... ....+..+ .. .+.|+++|+||+|+.+.. ...+...+.... .....++++++||++|.|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998864222 11122222 22 468999999999986432 222222221110 11235689999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987643
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=3.6e-25 Score=167.90 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCC----------ccc-hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||+|+|++.... ...+ |.+.....+.+.+..+.+|||||.... ... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999998753 2333 333445566678889999999995321 111 123
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+......+...+..........+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999987766553 3333322 47899999999999653222222222222222233467999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987654
No 141
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=6e-25 Score=144.17 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=114.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|.+|+|||||++++.+..+.. ..++++..... +...+ ..+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988544 44555544433 55566 7889999999999988888888999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|.... .++.... .+...+..... .+.|+++++||+|+.............. .....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCceEEeecCCCCCHHHH
Confidence 999876 5555554 44444444332 2789999999999976432333333332 223446999999999999999
Q ss_pred HHHHH
Q 030120 170 MDWLS 174 (182)
Q Consensus 170 ~~~i~ 174 (182)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
No 142
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=138.33 Aligned_cols=165 Identities=43% Similarity=0.762 Sum_probs=147.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECC-EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+++.++++++|-.++|||||+..|.+.......||.+++...+.+.+ .++.+||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 37899999999999999999999999999889999999999999965 99999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|.++...++...+.+.+++.......+|+.+..||-|+.-....+++..-+........-+++-++||++++|+..-.++
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999889988888888888877788999999999999766666666666666666677889999999999999988888
Q ss_pred HHHHHh
Q 030120 173 LSNTLK 178 (182)
Q Consensus 173 i~~~~~ 178 (182)
+.....
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 876544
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=4.7e-26 Score=155.46 Aligned_cols=162 Identities=23% Similarity=0.235 Sum_probs=102.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCC-----------CCCccchhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQ-----------TSIRPYWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~~ 81 (182)
+...++|+++|++|+|||||+|++.+..+.. ..++++.....+.+. ++.+|||||. +.+...+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887654 444444444444333 7899999994 3344444444
Q ss_pred c----CCCCeEEEEEeCCCcccHHH---------HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcc
Q 030120 82 F----PNTEAVIYVVDSSDTDRIQT---------AKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELH 146 (182)
Q Consensus 82 ~----~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~ 146 (182)
+ ..++++++|+|..+...... ....+...+. ..+.|+++|+||+|+.+.. ...++...+...
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 3 34678899999865321100 0111122222 2478999999999986432 112222222210
Q ss_pred -cccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 147 -KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 147 -~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
.......+++++||++| |+++++++|.+.+.+..
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 00011236899999999 99999999999887654
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=5.4e-25 Score=159.21 Aligned_cols=156 Identities=24% Similarity=0.256 Sum_probs=112.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.||+|||||++++.+..... ..+|..++...+.+.+ .++.+||+||.... ...+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 589999999999999999999865322 2345667777777766 89999999996422 222334456799
Q ss_pred eEEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++. ++++....|..++.... ...+.|+++|+||+|+.+....+++.+.+. ...+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence 99999999976 55666666665554321 224689999999999965432223322222 12235799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
++|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
No 145
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=2e-25 Score=154.49 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=114.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 83 (182)
+.-.|+|+|.||+|||||+|++.|.+.+- ..+.++ .....+..++.++.++||||...-.. .....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 34459999999999999999999999765 334333 33344455789999999999544322 2355678
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|+++||+|+.++.. .-.++....++. .+.|+++++||+|...+... +...............++++||++|
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHH--HHHHHHHHHhhCCcceEEEeecccc
Confidence 9999999999998643 233333333333 36799999999998765331 2223322333344558999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++.+.+.+.+.+++++
T Consensus 158 ~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999998764
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=5.1e-25 Score=160.63 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCC---------Cccchhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS---------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~---------~~~~~~~~~ 82 (182)
..++|+++|.+|+|||||+|+|.+..... ..+|.++....+.+ ++.++.+|||||..+ +.. ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA-TLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH-HHHHH
Confidence 45899999999999999999999987432 35566777777777 578999999999722 111 12246
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.++|++++|+|++++.+......| ..++......+.|+++|+||+|+.+. .++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999998776555433 33444433357899999999999643 22221111 123589999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 147
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=5.2e-26 Score=146.62 Aligned_cols=141 Identities=24% Similarity=0.283 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCcc------chhhhc--CCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d 86 (182)
++|+++|+||+|||||+|+|.+.+... ..| |.+.....+.+.+..+.++|+||...+.. ....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988443 444 55566667777899999999999544322 223333 6899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.+ .......++.. .++|+++++||+|+..... .+.+.+. .+++++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~--------Lg~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSER--------LGVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHH--------HTS-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHH--------hCCCEEEEEeCC
Confidence 999999998753 33333333433 3799999999999854322 2333333 356899999999
Q ss_pred CCCHHHHHHHH
Q 030120 163 GEGLFEGMDWL 173 (182)
Q Consensus 163 ~~~v~~l~~~i 173 (182)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=3e-24 Score=140.87 Aligned_cols=143 Identities=20% Similarity=0.173 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+..... ..+ +.......+...+.++.+|||||....... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999887532 222 223344455567789999999997665432 23456789
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998766555433222 257899999999999754322 1233456799999999999
Q ss_pred HHHHHHHHHHHH
Q 030120 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 v~~l~~~i~~~~ 177 (182)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 149
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=4.9e-25 Score=149.38 Aligned_cols=158 Identities=21% Similarity=0.126 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----c----cc--ccccccceeeEEEEC--------------CEEEEEEECCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE----V----VS--TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~----~----~~--~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (182)
++|+++|++|+|||||+++|++.. + .+ ...|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1 11 123444444444433 67999999999976
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc----cc--
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL----HK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~~-- 147 (182)
+..........+|++++|+|+.++........+. +... .+.|+++++||+|+......+...+.... ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444556789999999998864433322221 1111 25799999999998643222222221111 11
Q ss_pred ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
....+++++++||++|.|++++++++.+.++.+
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 113457899999999999999999999987754
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=5.8e-25 Score=147.00 Aligned_cols=152 Identities=22% Similarity=0.200 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc--cc-ccccccceeeEEEEC-CEEEEEEECCCCCC----Ccc---chhhhcCCCCeEEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRP---YWRCYFPNTEAVIY 90 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~~d~ii~ 90 (182)
++|++|+|||||+|++.+... .. ..+|.......+.+. +.++.+|||||... ... .+...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 579999999999999999874 22 233455566666677 89999999999632 111 22345678999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHHhccc------cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 91 VVDSSDT------DRIQTAKEEFHAILEEEE------LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+.+. .++.....|...+..... ..+.|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456666656555543321 1468999999999996543222221 111122345569999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 030120 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~ 176 (182)
||+++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 151
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=1.9e-24 Score=162.58 Aligned_cols=147 Identities=22% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|.+|+|||||+|++.+... ....+ |.+.....+...+.++.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 23333 444556667778899999999998754332 23467
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+...... +.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998876654332 222 2468999999999996432211 12334689999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|+++++++|.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
No 152
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=1.7e-24 Score=163.30 Aligned_cols=159 Identities=21% Similarity=0.184 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccc-----------hh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++++++|.+|+|||||+|++++..... ..+ |.+.....+...+..+.+|||||....... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999876432 222 333444555667789999999997654322 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHhCcccccCCceEEEEe
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++++|+|+.++.+..... .+..... .+.|+++|+||+|+.+ .....++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 4678999999999999886654432 2222222 4689999999999972 22223333333332223345789999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030120 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++|.|++++|+++.+.+.
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=6.7e-25 Score=149.69 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc---cc---ccccccceeeEEEEC---------------------------C----
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||+..+.+... .. ...+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 11 111111111111110 2
Q ss_pred --EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH
Q 030120 61 --IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 61 --~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 138 (182)
..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67899999999988887888888999999999998742112222222222 211 2357999999999964322212
Q ss_pred HHHHhCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 139 VSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
..+.+..... ....++++++||++|.|+++++++|.+.+++++|
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCCC
Confidence 2222211111 1235679999999999999999999999998775
No 154
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=2.2e-24 Score=141.75 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=102.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCcc------chhhhcC--CCCeEEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYFP--NTEAVIY 90 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~d~ii~ 90 (182)
++|.+|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||+..+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 57999999999999999876333 333 44455566777778999999999876654 2445554 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|+.+.+. ...++..+.. .++|+++|+||+|+.+..........+ ....+.+++++||+++.|+++++
T Consensus 81 v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 999987643 2233333322 368999999999996543221111111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+.+.+..
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=2.7e-24 Score=145.93 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCccccc-------------c----cccceeeEEEECCEEEEEEECCCCCCCccch
Q 030120 18 ARILVLGLDNAGKTTILYRLQM--GEVVSTI-------------P----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
.+|+++|.+|+|||||+++|++ +.+.... . +.......+.+....+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 3333211 1 1112233455678899999999999999999
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcc--cccCCce
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELH--KIKNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~--~~~~~~~ 153 (182)
..+++.+|++++|+|+++.. ......++..... .+.|+++|+||+|+...... .++...+... .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998753 2233333333322 46899999999999653222 1222221111 1123367
Q ss_pred EEEEecCCCCCCH----------HHHHHHHHHHHhc
Q 030120 154 AIFKTCAIKGEGL----------FEGMDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~Sa~~~~~v----------~~l~~~i~~~~~~ 179 (182)
+++++||++|.|+ .+|++.|.+.++.
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence 8999999999654 5666666665543
No 156
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1.1e-23 Score=140.40 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCCCcc-----------chhhh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|.+|+|||||++++.+..... ..+++ ......+...+.++.+|||||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999999876432 22222 233344556778899999999754311 11234
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEec
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+..+|++++|+|+.++.+.... ..+... .. .+.|+++++||+|+.+.. ....+..............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5789999999999988664432 222222 21 368999999999997552 2233333333222222346799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~ 176 (182)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 157
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=6.8e-27 Score=149.45 Aligned_cols=160 Identities=16% Similarity=0.319 Sum_probs=131.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEE--EECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETV--QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+|++|+|+.++||||++.+++.+-|.. +..|++... ..+ ..+.++..+|||+|++++......|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 577899999999999999999999888877 666666432 223 236678889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+||+.++..||+....|..++..+. ..+|.++|-||+|+.++. .+...+.+..++...+.++.+|++...|+.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds---~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDS---QMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhh---hcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999999997765 489999999999997542 22222222333455667999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|.++.+++.+
T Consensus 173 F~YLaeK~~q 182 (246)
T KOG4252|consen 173 FAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 158
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.9e-24 Score=140.79 Aligned_cols=150 Identities=29% Similarity=0.400 Sum_probs=113.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-cc-ccccccceeeEEEEC----CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 22 VLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999999887 33 33444 555544443 678999999999888887788899999999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
++.+......++..........+.|+++++||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998887777764344444444689999999999997554333221 01111234567899999999999999999875
No 159
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=5.1e-25 Score=142.46 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCC-----CccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS-----IRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.+..+. ..+|.+ +.+.. .+|||||+.. +.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999987653 223332 22222 6899999731 22222 34789999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
++++.++.. ..|. ... ..|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~-~~~~-~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-PGFA-SIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-hhHH-Hhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 999987644 2232 221 24999999999986432 22222222211 11236899999999999999998
Q ss_pred HH
Q 030120 173 LS 174 (182)
Q Consensus 173 i~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=5.3e-24 Score=161.61 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCC--------Cccchhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+|+|.+|+|||||+|++.+..... ..+++ +.....+.+.+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 345789999999999999999999876543 33332 234445566788899999999763 223345578
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... +..+... ...+ .++++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~----~g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWS----LGLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHh----cCCC-CeEEEEcCC
Confidence 89999999999998865432 223333332 4789999999999864321 1111111 1111 247999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++++.+.+++
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988764
No 161
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=4.4e-24 Score=151.60 Aligned_cols=123 Identities=19% Similarity=0.333 Sum_probs=102.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---------------CEEEEEEECCCCC
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---------------NIKFQVWDLGGQT 72 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~ 72 (182)
.+.+...+||+++|+.|+|||||++++.++.+.. ..+|++... ..+.+. ...+.+|||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3556788999999999999999999999988876 667776543 344442 3568999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-----------cCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-----------LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~ 133 (182)
.+..++..++++++++|+|||+++..++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999988865421 125899999999999653
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=5e-24 Score=139.87 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCCCCeE
Q 030120 21 LVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTEAV 88 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (182)
+++|.+|+|||||++++.+.... ...+ |...........+..+.+|||||+..... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987632 2222 33344555666788999999999887543 334567889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
++|+|+.+..+... .++..++.. .+.|+++|+||+|+.+.... ...... ....+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEEecccCCCHHH
Confidence 99999987643322 233333333 35899999999999754222 111111 1112589999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.7e-23 Score=155.12 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-ccccccceeeEEEEC-CEEEEEEECCCCCC-------CccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS-------IRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (182)
.|+++|.||||||||++++++.... . ..+|..++...+.+. +..+.+||+||... +...+...++++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987633 2 344566777777775 78999999999632 11223334567999
Q ss_pred EEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+++. +.+.....|..++.... ...++|+++|+||+|+.+. ...+...... ...+++++||+++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-----l~~~i~~iSA~tg 312 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-----LGPKVFPISALTG 312 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-----hCCcEEEEeCCCC
Confidence 9999999764 44555555555553322 1246899999999998432 2222222111 1156999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
+|+++++++|.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 164
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=5.3e-24 Score=159.71 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=110.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
-..|+++|.||+|||||+|+|.+..... ..+|..++...+.+.+.++.+|||||.... .......+.+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 4589999999999999999999865432 344666788888888899999999995321 112233567899
Q ss_pred eEEEEEeCCCc----ccHHHHHHHHHHHHhcc----------ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030120 87 AVIYVVDSSDT----DRIQTAKEEFHAILEEE----------ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 87 ~ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++++|+|+++. +.+.....+..++.... ....+|+++|+||+|+.+... +.+.+... ....+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~-l~~~g 314 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPE-LEARG 314 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHH-HHHcC
Confidence 99999999753 23444433333332221 224689999999999864322 21111111 11235
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
++++++||+++.|+++++++|.+.+...
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999887643
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=4.3e-24 Score=145.24 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=107.0
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccccee--eEEEECCEEEEEEECCCCCC----------Cc
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV--ETVQYNNIKFQVWDLGGQTS----------IR 75 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~ 75 (182)
++..+.+...+|+++|++|+|||||+++++++.+. ...++.+... .... ...++.+|||||... +.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 45556778899999999999999999999987643 3444433221 1122 246899999999532 12
Q ss_pred cchhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030120 76 PYWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
.....+++ ..+++++++|..++.+... .++...+.. .+.|+++++||+|+.+....+.....+.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcC
Confidence 22233444 3468888999887643322 223333332 3688999999999965433333222222111 1114
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.+++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 579999999999999999999988765
No 166
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=1.7e-23 Score=156.70 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=108.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccccc--cceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|++|+|||||+|+|++... ....+++ +.....+.+++..+.+|||||....... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5678999999999999999999998763 3333333 3445566778899999999998655432 23577
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.+.... |+..... .+.|+++|+||+|+.+. ....+ ....+.+++.+||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~--------~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFF--------VSSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhh--------hhhcCCceEEEEEec
Confidence 899999999999998776554 5444321 36899999999999643 11111 112234689999998
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
.|++++++.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 346 -LKIKALVDLLTQKIN 360 (442)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 689998888887664
No 167
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=1.5e-23 Score=150.66 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc--cc-ccccee-eEEEECCEEEEEEECCCCCCCc--------cchhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST--IP-TIGFNV-ETVQYNNIKFQVWDLGGQTSIR--------PYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--~~-t~~~~~-~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 83 (182)
+.-.|+++|++|+|||||+|++++..+... .+ |+.... ......+.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 345699999999999999999999886542 22 222222 2222355799999999975432 22334678
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+... ..................+++++||+++
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 8999999999998422 233333333332 46899999999999732 1222222221111223567999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++++++++.+.+++++
T Consensus 157 ~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999887653
No 168
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=4e-24 Score=144.37 Aligned_cols=157 Identities=22% Similarity=0.223 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---------------------ccccccceeeEEE--ECCEEEEEEECCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 72 (182)
+..+|+++|+.++|||||+++|+...... ..-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46789999999999999999997543110 1224445566666 788999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC-----ccc
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE-----LHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~ 147 (182)
.+.......+..+|++++|+|+.++... ...+.+..+ .. .+.|+++++||+|+... ...+....+. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~-~~---~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL-RE---LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH-HH---TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccc-cc---cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 9888888889999999999999987432 223333333 22 47889999999999722 1122222221 111
Q ss_pred ccC-CceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 148 IKN-RQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
... ..++++++||++|.|+++|++.|.+.+|
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3689999999999999999999999876
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.3e-23 Score=157.31 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=111.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCCCccc-----------hh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||+|++++..... ..+.+. .....+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999876432 333232 223445567889999999996532211 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+.++.+..... .+..+. . .+.|+++|+||+|+.+.....++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~-~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLAL-E---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 4678899999999999886654432 222222 2 4689999999999974433344444443333334567899999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 030120 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~ 178 (182)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887554
No 170
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=6.8e-25 Score=144.89 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=122.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|+.+||+..+|||+|+-.+..+.|+. +.||.--++ ..+.+ ..+.+.+|||+|++.+...++..+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999998888887 777665332 22333 3467889999999999998888999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccccC-CceEEEEe
Q 030120 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKN-RQWAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~-~~~~~~~~ 158 (182)
+||++.++.|++... +|+.++.... ++.|+++|++|.||.++... +++.. ......++. .-..|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999865 6666664443 78999999999999743211 11110 000111111 23679999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++..|++++|+..+.....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999998876644
No 171
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=7.8e-24 Score=141.08 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=103.6
Q ss_pred ccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcccc
Q 030120 42 VVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 42 ~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
|.+ +.||++..... +.+ ....+.+|||||++.+...+..+++.+|++++|||++++.++.....|+..+.....
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~- 83 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG- 83 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-
Confidence 444 67788765543 344 347889999999999999999999999999999999999999999999888876533
Q ss_pred CCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 117 KGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...|+++|+||+|+.+. ....+.... ....++.++++||++|.|++++|++|.+.+++.
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999542 222222211 223355789999999999999999999988753
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=7.1e-23 Score=152.60 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC--ccch------hhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI--RPYW------RCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~--~~~~------~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+..+.. ...|.+.....+.+.+ ..+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999876532 3445566666666655 48899999997432 1122 2346889
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE-EEEecCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (182)
|++++|+|++++.+......+ ..++......+.|+++|+||+|+.+.... ..... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999998766555322 23333333347899999999999643111 11111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|+++++++|.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=1.3e-23 Score=137.86 Aligned_cols=142 Identities=24% Similarity=0.266 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCcc----chhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP----YWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|.+|+|||||+|++.+..... .++. .+.+... .+|||||...... .....+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-ccce-----EEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999987654221 1222 2222222 2699999743222 223346899999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
++.+++ ...|+..+. .+.|+++++||+|+.+. ....+.+..... ....+++++||++|+|++++++.+.
T Consensus 75 ~~~~s~--~~~~~~~~~-----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESR--LPAGLLDIG-----VSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccc--cCHHHHhcc-----CCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 988654 223333321 35789999999998543 333333332211 2225899999999999999999998
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87653
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=5.2e-23 Score=136.14 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccc-cceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI---PTI-GFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~---~t~-~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 84 (182)
..+|+++|++|+|||||+|++.+....... .+. ..........+..+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999988754311 121 122223333568899999999765432 23445788
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|+.++. .....++...+.. .+.|+++|+||+|+... ...+.+............+++++|++++.
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 99999999999872 2233333333332 26899999999999632 12222222222222334679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~v~~l~~~i~~~~ 177 (182)
|++++++.|.+.+
T Consensus 156 ~~~~l~~~l~~~~ 168 (168)
T cd04163 156 NVDELLEEIVKYL 168 (168)
T ss_pred ChHHHHHHHHhhC
Confidence 9999999998753
No 175
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=3.4e-23 Score=141.12 Aligned_cols=157 Identities=25% Similarity=0.360 Sum_probs=114.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCC-CeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-EAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (182)
+|+++|++|+|||||+++|..+.+....+++..+...... ....+.+||+||+..+...+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877654544444444433 367899999999999988888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc------------------------
Q 030120 94 SSDT-DRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELH------------------------ 146 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------------ 146 (182)
+.+. .++.....++..++... ...+.|+++++||.|+........+...+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 56777777766665432 12579999999999986543332222211100
Q ss_pred ---------cc--cCCceEEEEecCCCCC-CHHHHHHHHHH
Q 030120 147 ---------KI--KNRQWAIFKTCAIKGE-GLFEGMDWLSN 175 (182)
Q Consensus 147 ---------~~--~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 175 (182)
.. ....+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 0135678899998876 69999888865
No 176
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5e-23 Score=151.80 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 87 (182)
.|+++|.||||||||+|++.+.+... ..+|.......+.+.. ..+.++||||...- .......++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 79999999999999999999876422 2335556777777754 56999999996432 1223345788999
Q ss_pred EEEEEeCC---CcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 88 VIYVVDSS---DTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++ +.+.+.....+..++.... ...+.|+++|+||+|+.......+....+... .....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999998 3445555555555554321 22468999999999986432222222211111 111235899999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++++.|.+.+++.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988764
No 177
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=3.9e-23 Score=142.84 Aligned_cols=161 Identities=27% Similarity=0.285 Sum_probs=116.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE--C--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.+..+.. +.+|.......... . ..++.+|||+|+++++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999887 55555533332222 2 56799999999999999999999999999999
Q ss_pred EeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH-HH----------HhCcc-cccCCceEEEEe
Q 030120 92 VDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAV-SE----------ALELH-KIKNRQWAIFKT 158 (182)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~-~~----------~~~~~-~~~~~~~~~~~~ 158 (182)
+|..+..++... ..|...+. .....+.|+++++||+|+......... .. ..... ........++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~-~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELR-ELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHH-HhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999995554444 45554543 333246899999999999765322111 00 00000 001123339999
Q ss_pred cCC--CCCCHHHHHHHHHHHHh
Q 030120 159 CAI--KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~--~~~~v~~l~~~i~~~~~ 178 (182)
|++ .+.++.++|..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999888764
No 178
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=152.73 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCc---------cchhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+|+|.||+|||||+|+|.++...- ...|.+..+....+.+.++.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999988554 3346678888999999999999999966432 224557789
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++|||+|...+-+ ...+.+.++++. .++|+++|+||+|..+. .....+... ...-.++++||.+|.
T Consensus 84 ADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efys-----lG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYS-----LGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHh-----cCCCCceEeehhhcc
Confidence 999999999998743 344445555553 46999999999997632 122222222 122248999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030120 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
|+.+|++.+.+.++
T Consensus 152 Gi~dLld~v~~~l~ 165 (444)
T COG1160 152 GIGDLLDAVLELLP 165 (444)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999873
No 179
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=9.9e-23 Score=148.50 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccc-----------hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~~ 80 (182)
..++++++|.||+|||||+|++++++..- ...|.+.....+++++.++.++||+|-..-... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988543 444555666677778999999999994322111 234
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEe
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|++++|+|++.+.+ .....+..+... .+.++++++||+|+.+. ...++....+..........+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 5678999999999999844 333333333333 57899999999999765 3344555555444444566789999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||+++.++.++|+.+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999999886553
No 180
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.91 E-value=7.1e-23 Score=161.99 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=112.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCc-c---------c-hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR-P---------Y-WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-~---------~-~~~ 80 (182)
...+|+++|.+|+|||||+|++++.... ...+ |.+.....+.+.+.++.+|||||..... . . ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999998742 3233 3344445566788889999999964211 1 1 123
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
.++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999987766543 3333322 46899999999999654332333333322211234457899999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987764
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=6.2e-23 Score=157.97 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCE-EEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+..+|+++|++++|||||++++.+..+.. ..+ |.......+.+.+. .+.+||||||+.+..++......+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 466899999999999999999998877655 222 33344445555444 89999999999999999888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc----cCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (182)
|+|++++... .....+... ...+.|+++++||+|+... ..+++...+..... .....+++++||++|.|+
T Consensus 165 VVda~dgv~~-qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMP-QTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCH-hHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999876322 222222221 1246899999999999643 33344433322111 112357999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=7.1e-23 Score=154.48 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCC--------CccchhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+..... ..+ |.+..+..+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877432 333 33455666777889999999999632 2334556788999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+.++.+... ..+..+++. .+.|+++|+||+|+.+.... ..+.. .....+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~-----~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFY-----SLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHH-----hcCCCCeEEEeCCcCCCh
Confidence 9999999988644322 233333333 36899999999998654221 11111 111225899999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
.++++.+.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=1.4e-22 Score=133.11 Aligned_cols=150 Identities=21% Similarity=0.170 Sum_probs=105.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEEC-CEEEEEEECCCCCCCcc-------chhhhcCCCCeEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTEAVI 89 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~ii 89 (182)
++|++|+|||||++++.+..... ...+........... ...+.+|||||...... ....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876553 111222333333333 67999999999776543 3345778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|+.+..+..... +..... ..+.|+++|+||+|+.......................+++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999886654443 222222 257899999999999765444333221222333456678999999999999999
Q ss_pred HHHHHHH
Q 030120 170 MDWLSNT 176 (182)
Q Consensus 170 ~~~i~~~ 176 (182)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.3e-22 Score=153.16 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCC--------CccchhhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+.....+.+.+..+.+|||||+.. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 57999999999999999999987743 2333 34456666777889999999999886 223345567899
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+.. ..++..+++. .+.|+++|+||+|+.+. .....+.... ....++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l-----g~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL-----GLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc-----CCCCCEEEEeeCCCC
Confidence 9999999998864432 2233333333 36899999999997542 1122222111 111379999999999
Q ss_pred HHHHHHHHHHH
Q 030120 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
+.++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 185
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=2.5e-23 Score=139.50 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=94.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCEEEEEEECCCCCC----------Cccc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 77 (182)
+.+..+..+|+++|.+|+|||||+|++.+..+.. ..++.+. ....+..+ ..+.+|||||... +...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 3455888999999999999999999999886332 3333322 22223233 3799999999532 1222
Q ss_pred hhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCce
Q 030120 78 WRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQW 153 (182)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (182)
...+++ .++++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+..........+..... ....+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 233443 35899999999886443333 22223322 46899999999998643222222222211111 12345
Q ss_pred EEEEecCCCCCCHH
Q 030120 154 AIFKTCAIKGEGLF 167 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~ 167 (182)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999973
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=1.6e-22 Score=159.15 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=112.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+...|+++|+.++|||||+++|.+..+.. ... |.......+.+.+..+.+|||||++.+..++......+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 3577899999999999999999998776654 222 3334444566678899999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--c--cCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--I--KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~Sa~~~~~v 166 (182)
|+|++++...+ ....+... ...+.|+++++||+|+... ....+...+.... . ....++++++||++|.|+
T Consensus 367 VVdAddGv~~q-T~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQ-TIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHh-HHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99998863222 22222221 2246899999999999653 2333333322111 0 123478999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
++++++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
No 187
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.8e-22 Score=155.00 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=110.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------ccc-cccc------ccc--e--eeEEEEC-----CEEEEEEECCCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IGF--N--VETVQYN-----NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-------~~~-~~~t------~~~--~--~~~~~~~-----~~~~~~~D~~g~~~ 73 (182)
..+++++|+.++|||||+++|+... +.. ...+ .++ . ...+.+. ...+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111 1111 122 2 2223332 27889999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++...+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9988999999999999999999887666555444332 2 367999999999986432 22222222211 111223
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.++++||++|.|++++++.|.+.++..
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 589999999999999999999988754
No 188
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=145.89 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=113.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
...++++++|.||+|||||+|.|++++... ..+|.+.-...+..++.++.++||+|........ ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 678999999999999999999999988543 4446667778888899999999999976554433 3456
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|.+++|+|++.+.+-.+... .. ....+.|+++|.||.|+........+ ....+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~--~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL--IE----LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH--HH----hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecC
Confidence 88999999999998633222221 11 12246899999999999765443222 112233699999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|+|++.+.+.|.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999887654
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=1e-22 Score=157.33 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---ccc-cc--ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE---VVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~---~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.|+++|++++|||||+++|.+.. +.. .. .|.+.....+...+..+.+||+||++.+...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 222 22 234444555666778999999999999988888888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCHHHHHHHhCcccc--cC-CceEEEEecCCCCCCHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELHKI--KN-RQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~Sa~~~~~v~ 167 (182)
+|++++.. ....+.+. ++.. .+.| +++|+||+|+.+......+......... .. .+++++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99998532 22222222 2222 3566 9999999999754222222222211110 11 25789999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.+.+.+.
T Consensus 156 eL~~~L~~l~~ 166 (581)
T TIGR00475 156 ELKKELKNLLE 166 (581)
T ss_pred hHHHHHHHHHH
Confidence 99999877654
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=3.5e-22 Score=158.05 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=105.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCC--------Cccchhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+|+|||||+|++++..... ..++++ .......+.+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 344689999999999999999999876533 333332 33334455778999999999763 223345567
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|+.++.. .....+...+.. .+.|+++|+||+|+.... ....+.... ... ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECCC
Confidence 89999999999987532 333333333333 578999999999985431 111111111 111 257899999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++++.+.+++
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=4.7e-22 Score=155.40 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=110.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc--ccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+...|+++|++++|||||+++|.+..+.. .. .|.......+.+ .+..+.+|||||++.+..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 567799999999999999999998876654 22 232222223333 35899999999999999999989999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc----ccCCceEEEEecCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK----IKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+.++...+.. ..+..+ . ..+.|+++++||+|+... ....+...+.... .....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999876432222 222222 2 246899999999999653 2333333332110 0123478999999999
Q ss_pred CCHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~v~~l~~~i~~~ 176 (182)
.|+++++++|...
T Consensus 396 ~GIdeLle~I~~l 408 (742)
T CHL00189 396 TNIDKLLETILLL 408 (742)
T ss_pred CCHHHHHHhhhhh
Confidence 9999999998764
No 192
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=7.6e-23 Score=128.40 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccc--cccceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIP--TIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~--t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
||+|+|++|+|||||+++|.+..+.. ..+ +.......... ....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 222 22222222222 444689999999988888777778999999999
Q ss_pred EeCCCcccHHHHHHH---HHHHHhccccCCCeEEEEEeCCC
Q 030120 92 VDSSDTDRIQTAKEE---FHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D 129 (182)
||++++.+++.+..+ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999998887554 3333221 24699999999998
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=8.9e-22 Score=148.01 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=100.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------cccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+...-. ....|.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356789999999999999999999733210 0122444455556668
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--- 136 (182)
+..+.+|||||++.+.......+..+|++++|+|+++.........+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887666666788999999999987311222222222232222 12479999999999652211
Q ss_pred ---HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 137 ---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+++...+.........++++++||++|.|+++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222222111122246899999999999986
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=3.6e-21 Score=133.60 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCc-------cchhhhcCCCCeE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 88 (182)
+++++|++|+|||||++++.+..... ..+|.+.....+.+.+.++++|||||..... ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 78999999999999999999876322 2335556667777889999999999975332 2334578999999
Q ss_pred EEEEeCCCccc-HHHHHHHH----------------------------------------HHHHhcc-------------
Q 030120 89 IYVVDSSDTDR-IQTAKEEF----------------------------------------HAILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~------------- 114 (182)
++|+|+++... .......+ ..++++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 11111111 1111110
Q ss_pred ---------c--cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 115 ---------E--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 115 ---------~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. ..-.|+++|+||+|+.+. .+... .. . ...++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0 012589999999998643 23221 11 1 124899999999999999999988653
No 195
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=7.3e-22 Score=133.40 Aligned_cols=145 Identities=18% Similarity=0.152 Sum_probs=95.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------cccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
.++|+++|+.++|||||+++|++... . ....|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 0111222223334446788999999999888777
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccccCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+..+.. ......+..+ .. .+.| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7788899999999999987632 2222233322 22 3455 7899999998632211 1 22222222222234
Q ss_pred ceEEEEecCCCCCCH
Q 030120 152 QWAIFKTCAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (182)
..+++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999874
No 196
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=128.38 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=112.3
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC-cccccccccceeeEEEECC-EEEEEEECCCC----------CCCcc
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNN-IKFQVWDLGGQ----------TSIRP 76 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~----------~~~~~ 76 (182)
+.+++.+...-|+++|.+|+|||||+|++++++ ....+.|.+.+....-+.- ..+.++|.||. +.+..
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 455666788899999999999999999999966 3444445554433332321 23899999993 23344
Q ss_pred chhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 77 YWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 77 ~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...|++ +..+++.++|+..+. ......+.+++.. .++|+++++||+|..............+........+
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 4455554 357888999998773 3444444555544 5799999999999987644433333333211122222
Q ss_pred --EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 --AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 --~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.++..|+.++.|++++.+.|.+.+...
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 288899999999999999999887653
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.88 E-value=4.1e-21 Score=133.53 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=110.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------ccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...-. . ...+.......+.+++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753210 0 011222344556678899999999999999888
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHh-----------
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEAL----------- 143 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~----------- 143 (182)
+..+++.+|++++|+|+.++... ....++..... .+.|+++++||+|+...... .++...+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999987543 33334443322 36899999999998643211 1111111
Q ss_pred ---------------------------------------------CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 144 ---------------------------------------------ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 144 ---------------------------------------------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.........+|++..||.++.|++.|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 01111234578999999999999999999999886
Q ss_pred c
Q 030120 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.88 E-value=4.4e-21 Score=148.57 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=110.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-c----------cccccceeeEEEEC-----CEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-----S-T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
++..+++++|+.++|||||+++|+... +. . . ..|.......+.+. ...+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997531 11 0 0 11222222333332 578999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
..+...+..+++.+|++++|+|++++........|.. ... .+.|+++|+||+|+.... ...+...+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCC
Confidence 9999889999999999999999998765444433322 221 368999999999986432 22222222111 1112
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...++++||++|.|+++++++|.+.++..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 23589999999999999999999988754
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.88 E-value=2.9e-21 Score=152.72 Aligned_cols=151 Identities=20% Similarity=0.196 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccc----------hhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 82 (182)
+..+|+++|++|+|||||+|++.+..... ..+ |.+.....+.+.+.++.+|||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 35789999999999999999998865432 333 333444556667889999999998765421 12232
Q ss_pred --CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.++. ..+..++.+ .+.|+++++||+|+.+........+.+. +..+++++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 478999999999986442 223333332 3689999999999864332222122221 234568999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~ 177 (182)
++++|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988754
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=1e-21 Score=147.70 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|+.++|||||+++|+.. .+.. ...|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456789999999999999999999752 1110 111333344445557
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 136 (182)
+..+.+|||||++.+.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 88999999999998876666677899999999999987532111 11111222221 23589999999999642211
Q ss_pred ----HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 137 ----AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
.++.............++++++||++|.|+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222121222357899999999999986
No 201
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=7.3e-21 Score=122.78 Aligned_cols=158 Identities=25% Similarity=0.304 Sum_probs=126.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------cc---ccccceeeEEEECC-EEEEEEECCCCCCCccc
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TI---PTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 77 (182)
...-...||++.|+.++||||+++++..+.... .. .|+.+.+....+.+ ..+.+++||||+++..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 345677899999999999999999998877311 11 24446666666644 89999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
|..+.+.+.++++++|.+.+..+ ... .+..++... ..+|+++++||.|+.+...++.+.+.+.... ...++++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~ 157 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIE 157 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceee
Confidence 99999999999999999999877 223 333343332 1299999999999998888888888887543 4567999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 030120 158 TCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~ 176 (182)
++|.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999888776
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=1.2e-21 Score=146.08 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeEE--------------EE------------CCEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVETV--------------QY------------NNIK 62 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~~--------------~~------------~~~~ 62 (182)
+..++|+++|++++|||||+++|.+...... ..|.......+ .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999965422110 01111110000 00 1467
Q ss_pred EEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH
Q 030120 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 142 (182)
+.+|||||++.+...+......+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999999753112222233222 221 13578999999999754222111122
Q ss_pred hCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 143 LELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+..... ....++++++||++|.|+++++++|...++.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 211110 1235789999999999999999999987664
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.87 E-value=3.3e-21 Score=148.85 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cccc-----------------ccccccceeeEEEECCEEEEEEECCCCCCCccch
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
-+|+|+|+.++|||||+++|+.. .+.. ...|+......+.+.+..+.+|||||+.++...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999852 2211 1123334445677789999999999999999888
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcccc--cCCce
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKI--KNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (182)
..+++.+|++++|+|+.++. ......++..... .++|+++|+||+|+...... .++.+.+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999998753 3455556665543 46899999999998643222 222222211111 22357
Q ss_pred EEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
+++.+||++|. |+..+++.|.+.++..
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 89999999996 7999999999988754
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.87 E-value=6.1e-21 Score=147.25 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=114.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------ccccc----ceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
+-.+|+++|+.++|||||+++|+. +.+... ..+.+ .....+.+++..+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 222221 01122 22344556889999999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HHHHHhCccc--ccCC
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHK--IKNR 151 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~--~~~~ 151 (182)
.+..+++.+|++++|+|+.++... ....++..... .+.|.++++||+|+....... ++.+.+.... ....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999876432 33334444333 368899999999986543322 2222221111 1224
Q ss_pred ceEEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
.++++.+||++|. ++..+++.|.+.++.+
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 5789999999998 5899999999988754
No 205
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=2.5e-21 Score=149.80 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--CCCCeEEEEE
Q 030120 24 GLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTEAVIYVV 92 (182)
Q Consensus 24 G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (182)
|++|+|||||+|++.+..... ..|+++ .....+.+++.++.+|||||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999887533 445444 344556677888999999998876543 23333 4789999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|+++.+. ...+..+..+ .+.|+++|+||+|+.+........+.+. +..+++++++||++|+|++++++.
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9987532 2223333322 4689999999999854322211111211 223467999999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98753
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=2.3e-21 Score=132.84 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------ccccccceeeEEEECCEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++|+|||||+++|+...-.. ...|.......+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997533110 11123333444556788999
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHHHHH
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEA 142 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~ 142 (182)
+|||||++.+...+...++.+|++++|+|+.++..... .. ...+.... ...++++|+||+|+...... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998876666777899999999999987642221 11 12222221 12457889999998643211 122222
Q ss_pred hCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 143 LELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 143 ~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+... .......+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2111 1112245799999999999864
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.86 E-value=6.6e-21 Score=142.16 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEEE------------E------C--------CE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQ------------Y------N--------NI 61 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~------------~------~--------~~ 61 (182)
.+..++|+++|+.++|||||+.+|.+..... ...|......... + . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3567999999999999999999996532111 1112221111100 0 0 25
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE 141 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 141 (182)
.+.+|||||++.+..........+|++++|+|+.++.........+.. +... ...|+++|+||+|+.+.....+..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 789999999988776666666778999999999975311122222222 2221 1247899999999975432211111
Q ss_pred HhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 142 ALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 142 ~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+.... ......+++++||++|.|++++++.|.+.+++.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 111111 012356899999999999999999999877643
No 208
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.6e-21 Score=122.15 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=128.1
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCC
Q 030120 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
++....-.++|.++|++..|||||+-.+.++.+.+ ...+.+.+... +.. ....+.+||..|++++..+.+-....
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 33455678899999999999999999999988865 66667765543 333 44677899999999999999999999
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHHHHHhCcccccCCceEEEEecCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+-+++|+||++.+.+++...+|+.+..... ...--++|++|-|+.-.-.+ ++-....+...++-.+.+.+++|+.+
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 999999999999999999999999986543 23334679999998432222 11112222334455667899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
..|++.+|..+..++-
T Consensus 171 sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLF 186 (205)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999887654
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=1.1e-20 Score=145.39 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEEE----------------CCEEEEEEECCCCCCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQY----------------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~ 75 (182)
..-|+++|++++|||||++++.+..+....+ +.+........ ....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999887654221 22222111111 11248899999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHHHHH
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAAVSE 141 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~~ 141 (182)
.++..+++.+|++++|+|++++...+.. ..+. .+.. .+.|+++++||+|+.+.-. ...+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9998899999999999999975332221 1111 2222 3689999999999963100 011100
Q ss_pred -----------HhCccc----------ccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 142 -----------ALELHK----------IKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 142 -----------~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.... ......+++++||++|+|+++++.++..
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 011100 0123578999999999999999998864
No 210
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-20 Score=115.63 Aligned_cols=163 Identities=23% Similarity=0.344 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccc-ceeeEEEE---CCEEEEEEECCCCCCC-ccchhhhcCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTE 86 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (182)
.+.-||+++|..++|||+++++++.++... ..||++ +....++- ....++++||.|.... ..+-.+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 456789999999999999999998776544 555665 33344433 3468899999997766 566678999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|++..+++||+.....-..+-+......+|+++.+||+|+.++ .++....+...++...+..+++++++...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999888766666666555567999999999998643 455556666666777888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
-+.|.++...+.+.
T Consensus 164 ~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 164 YEPFTYLASRLHQP 177 (198)
T ss_pred hhHHHHHHHhccCC
Confidence 99999999877644
No 211
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.2e-21 Score=123.60 Aligned_cols=159 Identities=19% Similarity=0.309 Sum_probs=134.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++++++|..|.|||+++++.+.+.|.. +.+|.+.......+ ...++..|||+|++.+......++-+..+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999988 88888877766655 33789999999999999988888888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+||++..-+......|..++.+... ++|+++++||.|..... .+..........++.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 9999999999999999999988764 59999999999986542 1122223334567789999999999999999
Q ss_pred HHHHHHHhcCC
Q 030120 171 DWLSNTLKSGG 181 (182)
Q Consensus 171 ~~i~~~~~~~~ 181 (182)
-++.+++..++
T Consensus 162 l~LarKl~G~p 172 (216)
T KOG0096|consen 162 LWLARKLTGDP 172 (216)
T ss_pred HHHhhhhcCCC
Confidence 99999876543
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=1.2e-20 Score=146.30 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---cc---ccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-|+++|+.++|||||+++|.+.+. .. ...|++.....+.. ++..+.+|||||++.+.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999986432 11 23343333333333 456789999999999877777788999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|++++.. ....+.+ .++.. .+.| +++|+||+|+.+......+...+.... ......+++++||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987532 2222222 23332 2344 689999999965322222222222111 112346799999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987544
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=2.9e-20 Score=128.19 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cc----------------cc-------ccce-----------------eeEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TI----------------PT-------IGFN-----------------VETVQ 57 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~----------------~t-------~~~~-----------------~~~~~ 57 (182)
|++++|+.++|||||++++..+.+.. .. .| .+++ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998654322 00 00 1111 02233
Q ss_pred ECCEEEEEEECCCCCCCccchhhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
..+..+.++||||++.+.......+. .+|++++|+|+..+.. .....+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766555554 6899999999987643 222222223332 4689999999999865432
Q ss_pred HHHHHH----HhCcc---------------------cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 136 DAAVSE----ALELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+... .+... .......++|.+||.+|.|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222222 22210 01123458999999999999998877643
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.85 E-value=2e-20 Score=124.01 Aligned_cols=153 Identities=23% Similarity=0.204 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEECCEEEEEEECCCCCCC----------ccchhhhcC--
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTSI----------RPYWRCYFP-- 83 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~-- 83 (182)
.|+++|.+|+|||||++.+.+..... ..++.+.... .+... ..+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999655444 4444333222 22223 38999999995442 222233333
Q ss_pred -CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCC
Q 030120 84 -NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 84 -~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 4578999999986632211 112222222 25799999999998644333222222221111 2345679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~ 177 (182)
++.+++++++.|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 215
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.85 E-value=9.7e-21 Score=131.29 Aligned_cols=161 Identities=20% Similarity=0.178 Sum_probs=107.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----cccceeeEEEECCEEEEEEECCCCCCC------------ccc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSI------------RPY 77 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~ 77 (182)
..+.++|+++|.||+|||||.|.+.+.++..... |.......+.-....+.++||||.-.- ...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3678899999999999999999999999776322 333455566668899999999993211 112
Q ss_pred hhhhcCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----------------HH
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----------------AA 138 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----------------~~ 138 (182)
....+.++|++++++|+++... -......+..+ .++|-++|+||+|....... .+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2345678999999999996432 12222222222 35788999999998643110 11
Q ss_pred HHHHhCccc-----cc----CCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 139 VSEALELHK-----IK----NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 139 ~~~~~~~~~-----~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+.+...... .. .....+|.+||++|+|++++-++|....++.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 111111110 00 1133599999999999999999999877654
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.85 E-value=2.5e-20 Score=138.64 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=105.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc----------c--c-------ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV----------V--S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~----------~--~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++... . . ...|.+.....+..++..+.++||||++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46689999999999999999999976310 0 0 111222222223235678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+..+ .. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999987632 2223333332 22 3566 6789999998643221 1 22222222222
Q ss_pred cCCceEEEEecCCCCC--------CHHHHHHHHHHHHhcC
Q 030120 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~~~ 180 (182)
.....+++++||++|. ++.++++.+.+.++..
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP 203 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence 2234689999999983 6789999988877643
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=1.7e-20 Score=129.48 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---------------------------cc-------ccccccceeeEEEECCEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++++|||||+.+|+...- .. ...|.+.....+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999963210 00 11133344455666889999
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-C--
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+.++.. .......+. ..... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998777667777888999999999988521 111222222 22221 236899999999997321 1
Q ss_pred -HHHHHHHh----CcccccCCceEEEEecCCCCCCHH
Q 030120 136 -DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 136 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
...+...+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 111122235889999999999886
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.84 E-value=4.8e-20 Score=125.28 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=98.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-----eeeEEEE-CCEEEEEEECCCCCCCccchhhh-----cCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-----NVETVQY-NNIKFQVWDLGGQTSIRPYWRCY-----FPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-----~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~~~ 84 (182)
+++|+++|++|+|||||+|++.+..... ..++.+. ....+.. ....+.+|||||..........+ +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999865433 1121121 1111111 13478999999976543333233 567
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccc------c
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKI------K 149 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~------~ 149 (182)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..... ..++.+.+..... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888532 234444444444443 2579999999999943211 1222222211111 1
Q ss_pred CCceEEEEecCC--CCCCHHHHHHHHHHHHhcCC
Q 030120 150 NRQWAIFKTCAI--KGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~~~~~~ 181 (182)
....++|.+|+. .++++..+.+.|...+++.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 233479999999 67999999999999998764
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.84 E-value=2e-19 Score=127.10 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccc---------------c--------cccccceeeEEEECCEEEEEEECCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE--VVS---------------T--------IPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~--~~~---------------~--------~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+|+++|++|+|||||+++++... ... + ..+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997421 110 0 011123334567789999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++.......++.+|++++|+|+.++... ....++.. ... .+.|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-CRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-HHh---cCCCEEEEEECCccCCC
Confidence 8877777788999999999999876432 22233322 222 46899999999998543
No 220
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9.9e-21 Score=119.80 Aligned_cols=162 Identities=35% Similarity=0.599 Sum_probs=137.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.-|++++|--|+|||||++.|.........||..+..+.+...+.++.-+|.+||..-+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 67789999999999999999999888887888999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEecCCC
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 162 (182)
.+.+++...+..+..++......+.|+++.+||+|.+.....++......... .......+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 99999999998888887766667899999999999988777666665443211 123456788899988
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
+.+.-+.|.++...
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 88877777776543
No 221
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=1.6e-19 Score=127.70 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--cc-------------------cccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE--VV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++... .. ....|+......+.+.+..+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996311 00 0111333445666778999999999999988888
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+..+++.+|++++|+|+.++.... ....+... .. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~-~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA-DR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 888999999999999998764322 22333322 22 4689999999999864
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.84 E-value=5.5e-20 Score=136.87 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---cc-------ccc--cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG-------EV---VS-------TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~-------~~---~~-------~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
...++++++|++++|||||+++|++. .+ .. ... |.......+..++..+.++||||++.+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999999862 11 00 011 2222222233356789999999998887
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCCCCCH-H----HHHHHhCccccc
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.++.. ....+.+..+ .. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999999999987532 2222333322 22 356755 68999999643221 1 222222211111
Q ss_pred CCceEEEEecCCCCC----------CHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 178 (182)
....+++++||++|. ++..+++.|...++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 235789999999984 67888888887665
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=4.6e-20 Score=116.54 Aligned_cols=135 Identities=23% Similarity=0.316 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC----CCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
|++++|+.|+|||||+++|.+.+... ..|..+. +.+ .++||||.- .+..........+|.++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-~KTq~i~-----~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-KKTQAIE-----YYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-CccceeE-----ecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 79999999999999999998866432 2222222 211 349999943 3333344455789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.+ .....+... .+.|+|=|+||+|+.. ....+.....+...... .+|++|+.+|+|+++|.++|
T Consensus 74 t~~~~--~~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRS--VFPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCc--cCCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 98743 112122222 3579999999999973 22333333344332222 37999999999999999987
Q ss_pred H
Q 030120 174 S 174 (182)
Q Consensus 174 ~ 174 (182)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 224
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.83 E-value=2.7e-19 Score=127.09 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---------------------ccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...-.. ...+.......+.+.+.++.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110 011233344556678899999999999887777
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+..++..+|++++|+|++++..... ...+... . ..+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~-~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFA-D---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCccCCC
Confidence 8888999999999999998754332 2222222 2 246899999999998643
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.5e-19 Score=138.47 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=100.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEEE----------------CCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQY----------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~~~D~~g~~~ 73 (182)
.+...|+++|++|+|||||++++.+.......+ +.+........ ....+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345679999999999999999998766543222 22222111111 001278999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHH-
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAA- 138 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~- 138 (182)
+..++...+..+|++++|+|++++... .....+. .+.. .+.|+++++||+|+...-. ...
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~-qt~e~i~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQP-QTIEAIN-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCH-hHHHHHH-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 998888888999999999999974221 1111222 2222 4689999999999852100 000
Q ss_pred ----------HHHHhCcccc----------cCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 139 ----------VSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 139 ----------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+...+..... .....+++++||++|+|++++++.+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 1111111110 123578999999999999999988764
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.83 E-value=1.2e-19 Score=135.64 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=103.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------ccc--cccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-----------------TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----------------~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++++++|++++|||||+++|++..-.. ... |.......+..++..+.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4667999999999999999999998642100 001 222222233346778999999999888
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..+.. ......+..+ .. .+.| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777889999999999987632 2233333322 22 3567 7789999999653221 1 22222222111
Q ss_pred cCCceEEEEecCCCCCC------------------HHHHHHHHHHHHh
Q 030120 149 KNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~ 178 (182)
.....+++++||.+|.| +..+++.|.+.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 164 PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 22347899999999863 4567777666543
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.1e-19 Score=138.39 Aligned_cols=149 Identities=24% Similarity=0.283 Sum_probs=108.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--cccceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--CC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~ 84 (182)
+..+++++|+||+|||||+|++.|.+.. ..+| |.+.....+.+.+.+++++|+||...+... ..+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3567999999999999999999987743 3666 444555667778889999999996544322 23333 45
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEEEecC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|+++.|+|+++-++.-. ...++++ .+.|+++++|++|..+... .+++. +..++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~--------~~LGvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLY---LTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLS--------KLLGVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHH--------HHhCCCEEEEEe
Confidence 799999999998754222 2233333 3789999999999854422 22322 345678999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|++++.+.+.+...+
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875443
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=7e-19 Score=123.41 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=114.0
Q ss_pred Hhhhhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC--------
Q 030120 8 MFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------- 74 (182)
Q Consensus 8 ~~~~~~--~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------- 74 (182)
.++..+ ......++|.|.||+|||||++.+.+.+..- ..+|.+++...+.....+++++||||.-+.
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 344444 3578899999999999999999999877543 455677899999999999999999993221
Q ss_pred ccch-hhhcCCCCeEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 75 RPYW-RCYFPNTEAVIYVVDSSD--TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 75 ~~~~-~~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.... ...-.-.++|+|+||++. +.+.+.+...+..+... .+.|+++|+||+|..+....++....+.. ..
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~ 309 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EG 309 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hc
Confidence 1111 111233589999999975 45778888888777544 34899999999999765444444433322 12
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
......+++..+.+++.+-..+...
T Consensus 310 ~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 310 GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccccceeeeehhhHHHHHHHHHHH
Confidence 2235677778888877766665554
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=2.1e-19 Score=133.83 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------c-----c-----c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------V-----V-----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-------~-----~-----~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++.. . . + ...|.+.....+...+..+.+|||||++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997421 0 0 0 111222222233335678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+..+ .. .+.|. ++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7766667788999999999987532 2223333333 22 24554 578999998653221 1 22222222211
Q ss_pred cCCceEEEEecCCCCC--------CHHHHHHHHHHHH
Q 030120 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~ 177 (182)
....++++++||++|. ++..+++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 2234789999999875 3455666655544
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.82 E-value=2e-19 Score=123.74 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------------cc----------cccceeeEEEE-----CCEEEEEEECCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST------------IP----------TIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
+|+++|+.|+|||||+++|+....... .. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986442210 00 11111112222 2478899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-------CCHHHHHH---
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-------LDDAAVSE--- 141 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~--- 141 (182)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... .....+.+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999988765432 233333322 35899999999998521 01111111
Q ss_pred ----HhCcccc------cCCceEEEEecCCCCCCHH--------HHHHHHHHHHhc
Q 030120 142 ----ALELHKI------KNRQWAIFKTCAIKGEGLF--------EGMDWLSNTLKS 179 (182)
Q Consensus 142 ----~~~~~~~------~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~~~~ 179 (182)
....... ......+++.|++.++++. ++++.|.+.++.
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 1111111 0112337789999997765 777777776553
No 231
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.82 E-value=3.4e-19 Score=124.23 Aligned_cols=155 Identities=26% Similarity=0.315 Sum_probs=107.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCC-------CCccchhhhcCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQT-------SIRPYWRCYFPNT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~-------~~~~~~~~~~~~~ 85 (182)
...++++|-||+|||||++++...+..- ..+|..+....+.+++ ..+.+-|.||.- .+.......++++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3468899999999999999998876432 4445556666666644 449999999932 2233345556889
Q ss_pred CeEEEEEeCCCc---ccHHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 86 EAVIYVVDSSDT---DRIQTAKEEFHAIL-EEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~---~s~~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+..+||+|++.+ ...++....+.++- ......+.|.++|+||+|+.+. ++.....+... ..+..++++||+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~---lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKR---LQNPHVVPVSAK 350 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHH---cCCCcEEEeeec
Confidence 999999999988 55555554444442 2334467899999999998632 22222222211 112259999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
.++++.++++.|.+.
T Consensus 351 ~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 351 SGEGLEELLNGLREL 365 (366)
T ss_pred cccchHHHHHHHhhc
Confidence 999999999988653
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.82 E-value=3.1e-19 Score=122.62 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--cc-----------------ccccccceeeEEEEC----------CEEEEEEECC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV--VS-----------------TIPTIGFNVETVQYN----------NIKFQVWDLG 69 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~~~D~~ 69 (182)
+|+++|+.++|||||+.+|+...- .. ...|+......+.+. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999975321 10 001222222223332 6788999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
|++.+......+++.+|++++|+|+.++...+. ...+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998765433 223333322 357999999999985
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.81 E-value=6e-19 Score=131.28 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------cccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
...++|+++|+.++|||||+++|++.... ....|.......+..++..+.++||||+..+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 66889999999999999999999863110 01112222222233366789999999998887
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCCCCC-HH----HHHHHhCccccc
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALD-DA----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+..+.. ......+..+ .. .+.|.+ +++||+|+.+... .+ ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777899999999999987632 2222333222 22 357765 6899999964211 11 222222211112
Q ss_pred CCceEEEEecCCCCC----------CHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 178 (182)
....+++++||+++. ++..+++.|.+.++
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 245789999999875 56788888887654
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.81 E-value=6.2e-19 Score=133.19 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc------c-----------c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV------V-----------S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~------~-----------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++++++|++++|||||+++|++... . + ...|.+.....+..++..+.++||||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 46688999999999999999999985211 0 0 111222223334457789999999999998
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-HH----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALD-DA----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+.++.. ....+++... .. .++| +++++||+|+.+... .+ ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8777778889999999999987743 2333344333 22 3566 788999999965321 12 22222222212
Q ss_pred cCCceEEEEecCCCCC
Q 030120 149 KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (182)
.....+++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 2346889999998874
No 235
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.81 E-value=5.1e-19 Score=121.51 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEE-CCEEEEEEECCCCCCCcc-----chhhhcCCCCeE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 88 (182)
||+++|+.++||||+.+.++.+..+. ..+|..+....+.. ....+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876554 45677777777765 667999999999976544 357788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHHHhC----cccc--cCCceEEEEecC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALE----LHKI--KNRQWAIFKTCA 160 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa 160 (182)
|||+|+.+.+ +......+...+.. ..+++..+.+.++|+|+..+....++..... .... ....+.++.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998544 33344444444332 2347899999999999975433322222111 1111 112488999998
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
-+ ..+.+.|..+++.+.++
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTT
T ss_pred cC-cHHHHHHHHHHHHHccc
Confidence 77 46999999998876543
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.81 E-value=1.6e-18 Score=137.35 Aligned_cols=115 Identities=23% Similarity=0.181 Sum_probs=87.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--------------c-------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++..+|+|+|+.|+|||||+++|+...- . ....|+......+.+.+..+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 45678999999999999999999974320 0 02224445556677789999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+...+..+++.+|++++|+|++++....... .+.... . .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~-~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQAD-R---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-h---cCCCEEEEEECCCCCCC
Confidence 98888899999999999999999876554333 333322 2 36899999999998754
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=99.81 E-value=2.2e-18 Score=129.50 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc-----------c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV-----------S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~-----------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++|+++|+.++|||||+++|.+. ... + ...|.+.....++.++..+.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467889999999999999999999622 100 0 111223333333346678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-HHHHHHh----Ccccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-AAVSEAL----ELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~~~~~~~----~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+. ++.. .+.| +++++||+|+.+.... +.+...+ .....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7766667778999999999987632 22222222 2222 3577 5789999999643211 1121111 11111
Q ss_pred cCCceEEEEecCC---CCCC-------HHHHHHHHHHHHhc
Q 030120 149 KNRQWAIFKTCAI---KGEG-------LFEGMDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~~~~ 179 (182)
.....+++++|+. ++.| +.++++.+.+.++.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 2235788998886 4444 78888888887653
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.81 E-value=2.3e-18 Score=131.60 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCccc-----------------------ccccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++++|||||+++|+. +.... ...++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4677999999999999999999963 11100 0001122334566788999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+......+++.+|++++|+|+.++... ....++... ...+.|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9998888777888999999999999876422 223333322 2247899999999998653
No 239
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-18 Score=128.69 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccc---cccceeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..=|+++|+..+|||||+..+-+.......+ |..+.-..+.. ....+.++|||||+.|..+......-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45568999999999999999997777655222 33344344444 3468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc----CCceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK----NRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 165 (182)
+|++++++-- ..........+. .+.|+++++||+|+.+. .+..+...+...... .....++++||++|+|
T Consensus 84 LVVa~dDGv~--pQTiEAI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVM--PQTIEAINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcc--hhHHHHHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999998732 222111222222 68999999999999854 455555544432221 2447899999999999
Q ss_pred HHHHHHHHHH
Q 030120 166 LFEGMDWLSN 175 (182)
Q Consensus 166 v~~l~~~i~~ 175 (182)
+++|++.+.-
T Consensus 158 i~eLL~~ill 167 (509)
T COG0532 158 IDELLELILL 167 (509)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 240
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.80 E-value=7.1e-19 Score=132.06 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=108.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccc--ceee---------------EEE------------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVE---------------TVQ------------ 57 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~--~~~~---------------~~~------------ 57 (182)
+.+..++|+++|+..+|||||+.+|.+..... ..-|+. +... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45778999999999999999999998644211 111111 1100 000
Q ss_pred ----ECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 58 ----YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 58 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.....+.++|+||++.+..........+|++++|+|+.++.......+.+. +....+ -.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC--CCcEEEEEecccccCH
Confidence 002478999999999988777778889999999999997521222333332 222221 2478999999999753
Q ss_pred CCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 134 LDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
....+..+.+.... ......+++++||++|.|++.|++.|.+.++..
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 22222222222111 012467899999999999999999999877654
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.80 E-value=9.6e-19 Score=132.54 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=97.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc------------cc----------------------ccccceeeEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS------------TI----------------------PTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~------------~~----------------------~t~~~~~~~~~ 57 (182)
....++++++|++++|||||+++|+...- .. .. .|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999974421 10 00 02223333344
Q ss_pred ECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q 030120 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-- 135 (182)
.++..+.++||||++.+.......+..+|++++|+|+..+..... ...+ .+....+ ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHH-HHHHHhC--CCceEEEEEeeccccchhHH
Confidence 567899999999999887666666799999999999987632111 1111 1222221 247899999999964321
Q ss_pred HHHHHHHhCccc--cc-CCceEEEEecCCCCCCHHHH
Q 030120 136 DAAVSEALELHK--IK-NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~~~~~--~~-~~~~~~~~~Sa~~~~~v~~l 169 (182)
..++...+.... .. ....+++++||++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 122222221100 11 23578999999999998753
No 242
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.80 E-value=7.1e-19 Score=137.98 Aligned_cols=160 Identities=17% Similarity=0.111 Sum_probs=103.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------------cc----------------------cc
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--------------TI----------------------PT 48 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--------------~~----------------------~t 48 (182)
+..++........++|+++|++++|||||+++|+...-.. .. .|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4556666677788999999999999999999998543110 00 02
Q ss_pred ccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 49 IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.+.....+...+.++.++||||++.+.......+..+|++++|+|+..+..-+ ....+. +.... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEec
Confidence 22233344557789999999999887666666788999999999998763211 111111 12221 136789999999
Q ss_pred CCCCCCC--HHHHHHHhCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 129 DLPGALD--DAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 129 D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+.+... ..++...+... .......+++++||++|.|+.+
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9964221 12222222111 1122346799999999999873
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.8e-18 Score=127.24 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=117.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--cc----------------ccccccceeeEEEECC---EEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS----------------TIPTIGFNVETVQYNN---IKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~----------------~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (182)
++--++.|+-+...|||||..+++...- .. ..-|+......+.|.+ +.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5667899999999999999999963221 00 1113333334555555 8999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
|.......+.-|+++++|+|++++---+.. ..+...++ .+..+|.|+||+|+... .++++...+... +.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFE----AGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHH----cCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence 999999999999999999999988432222 33333333 36889999999999765 444554444322 233445
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
+++.+||++|.|++++++.|+++++++.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 7999999999999999999999998763
No 244
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=7.2e-18 Score=121.70 Aligned_cols=157 Identities=21% Similarity=0.193 Sum_probs=115.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-CEEEEEEECCCCCCCcc--------chhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
...-..|+++|-.|+|||||+|++.+..... ...|.+.....+... +..+.+-||-|.-+-.. .+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3566799999999999999999999877543 555777777888775 68999999999432211 11223
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
...+|+++.|+|++++... ........++...+....|+++|.||+|+..+.. ....+... . + ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEec
Confidence 4678999999999999543 3334555666666666799999999999865432 11111111 1 1 58999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++.|.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998774
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.79 E-value=5.9e-18 Score=133.94 Aligned_cols=116 Identities=20% Similarity=0.132 Sum_probs=85.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------ccccccceeeEEEECCEEEEEEECCCC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..++-.+|+|+|++|+|||||+++|+...-. . ...|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 3456679999999999999999999742210 0 111333455667778999999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+...+...++.+|++++|+|+.++..... ...+... .. .+.|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 9888788888999999999999988754332 2233322 22 46899999999998643
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.79 E-value=2e-18 Score=128.95 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--c----------------------------------ccccccceeeEEEECCE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV--S----------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
++++++|+.++|||||+++|+...-. . ...|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999633210 0 00123333444555778
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHH
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAV 139 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~ 139 (182)
++.++||||++.+.......+..+|++++|+|+..+...+ ..+.+. +....+ ..++++++||+|+.+.... +++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 9999999999988776777789999999999998764322 121122 222221 3468999999999643211 112
Q ss_pred HHHhCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 140 SEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
.+.+... .......+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222111 1122356799999999999875
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.79 E-value=6.4e-18 Score=105.48 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhcCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
+|+++|.+|+|||||+|+|++..... ...|....+..+.+.+..+.++||||...... .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865432 22244455566677899999999999654211 123334889
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
|++++|+|+.++. ......+...++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999987732 222222222222 57999999998
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.78 E-value=2.8e-18 Score=129.15 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------------S-------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+.++|||||+.+|+... .. . ...|.+.....+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999997411 00 0 111333334445557
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 132 (182)
+..+.++|||||.++.......+..+|++++|+|+..+.- -....+.+... .. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 8899999999999998888888899999999999987631 02333333332 22 3554 789999999532
Q ss_pred --C--CCHHHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030120 133 --A--LDDAAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 133 --~--~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
. ...+++...+. ........++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 11222222222 222222458899999999999853
No 249
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.77 E-value=7.5e-19 Score=115.83 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE---CCEEEEEEECCCCCCCccchhhh---cCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY---FPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (182)
+.-.|+++|+.|+|||+|+..|..+...+..+....+.. ..+ ....+.++|+|||++++...... ...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 345799999999999999999999876554443433322 222 45689999999999988755544 78899999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030120 90 YVVDSSD-TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
||+|... .....+..+.+..++.... ...+|++++.||.|+........+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 9999974 2334555555555544332 3578999999999997665554444433
No 250
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.77 E-value=2.2e-20 Score=120.44 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..-++++|+|..|+|||+++.+++...+.. +..|++. ......+ .-+++++||.+||+++..+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 456799999999999999999999998887 6777763 3444444 346788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccC---CCeEEEEEeCCCCCCCCCH---HHHHHHhCcccccCCceEEEEecCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELK---GAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+|||+++.-+|+...+|..+.......+ -.|+++..||||....... ..+....+ ......++++|++.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwtets~Ke 178 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWTETSAKE 178 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCccceeeecccc
Confidence 99999999999999999998886654333 3789999999998654222 22222222 23334599999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
+.+++|+-..+++.+.
T Consensus 179 nkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKIL 194 (229)
T ss_pred ccChhHHHHHHHHHHH
Confidence 9999999999888654
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.77 E-value=2.8e-17 Score=125.75 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=80.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCccc---c--------------------cccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS---T--------------------IPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~---~--------------------~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+++|+|++++|||||+++++. +.... . ..+.......+.+.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 11110 0 001112234456688999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
|+..+.......+..+|++++|+|+.++.. .....++. .... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 998887777778899999999999987632 22233333 3222 4689999999999853
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=9.2e-18 Score=126.30 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------------c-------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--V-------------------------S-------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+.++|||||+.+|+...- . . ...|+......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999863110 0 0 111223333344457
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGA-VALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~ 132 (182)
+..+.++|||||++|.......+..+|++++|+|+.++.- .....+.+... .. .++ ++++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence 7899999999999999888889999999999999987421 02333332222 22 345 5788999999862
Q ss_pred CCC----H----HHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 133 ALD----D----AAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 133 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
... . +++...++........++++++||++|.|+.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 111 1 2222222222222235789999999999974
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=5.4e-17 Score=113.78 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCC-------CCccchhhhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 84 (182)
.-..+++++|.|++|||||++.|.+-+... ..+|.......+.|++..+++.|+||.- ..........++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 345689999999999999999998876443 4556678888899999999999999822 123445667899
Q ss_pred CCeEEEEEeCCCccc-HHHHHH----------------------------------------HHHHHHhc----------
Q 030120 85 TEAVIYVVDSSDTDR-IQTAKE----------------------------------------EFHAILEE---------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~~~~---------- 113 (182)
||.+++|+|+..... .+.... ....++++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986542 111111 11111111
Q ss_pred ------------c-c-cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 114 ------------E-E-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 114 ------------~-~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. . ..=+|.++|.||+|+... +++....... ..+++||..+.|++++.+.|.+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~~-------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARKP-------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhcc-------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0 1 112689999999999763 2333222211 5899999999999999999998764
No 254
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=9.6e-19 Score=130.46 Aligned_cols=163 Identities=14% Similarity=0.160 Sum_probs=121.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccc---eeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF---NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.+||+++|+.|+||||||-++....+.+..|..-. ....+.-...+..++|++..+..+......++++|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 457889999999999999999999999988774442211 01223335677899999987777777778889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++.+++.+++.....|..++++.. ..+.|+|+|+||+|..+.... .++...+... ...-.+++|||++..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLA 161 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhh
Confidence 99999999999988877777766654 247899999999999765333 1122222211 111248999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030120 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
++.++|....+.+.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999998877653
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.76 E-value=2.6e-17 Score=130.27 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-----c---c-------------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-----V---V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..+|+|+|++++|||||+++|+... . . ....|.......+.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3566789999999999999999997421 0 0 01124445556677789999999999998
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+...+...++.+|++++|+|+.++..... ...+... .. .+.|+++++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 887788888999999999999988743222 2233322 22 46899999999998743
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.7e-17 Score=122.17 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---cccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++..-|.|+|+...|||||+..|-+..+... .-|..+.-..+.. ++..+.|.|||||..|..+....-.-+|++++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 5667789999999999999999977665541 1122232222333 77999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc----ccCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK----IKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v 166 (182)
|+.+.|+-.-+... .++.....+.|+++.+||+|.+.. +++.+...+.... .-....+++++||++|+|+
T Consensus 231 VVAadDGVmpQT~E-----aIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQTLE-----AIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHhHHH-----HHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99999873222211 222333368999999999998765 4445444443221 1246688999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
+.|-+.+.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999888764
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=3.8e-17 Score=117.71 Aligned_cols=156 Identities=24% Similarity=0.222 Sum_probs=97.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE------------------------CCEEEEEEECCCC-
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY------------------------NNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------------~~~~~~~~D~~g~- 71 (182)
|+++|.||+|||||+|++.+..... ...|...+.....+ ...++++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 12233333322221 3367999999997
Q ss_pred ---CCCccc---hhhhcCCCCeEEEEEeCCCc-------------ccHHHH-------HHH-------------------
Q 030120 72 ---TSIRPY---WRCYFPNTEAVIYVVDSSDT-------------DRIQTA-------KEE------------------- 106 (182)
Q Consensus 72 ---~~~~~~---~~~~~~~~d~ii~v~d~~~~-------------~s~~~~-------~~~------------------- 106 (182)
+....+ ....++++|++++|+|+... +...+. ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333 23358999999999999731 101111 000
Q ss_pred ---------------------HHHHHhc---------------------cccCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q 030120 107 ---------------------FHAILEE---------------------EELKGAVALIFANKQDLPGALDDAAVSEALE 144 (182)
Q Consensus 107 ---------------------~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 144 (182)
..+++.. .....+|+++++||+|+.+. .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0001100 01235799999999997532 22222222
Q ss_pred cccccCCceEEEEecCCCCCCHHHHHH-HHHHHHhcCC
Q 030120 145 LHKIKNRQWAIFKTCAIKGEGLFEGMD-WLSNTLKSGG 181 (182)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~~~~~~ 181 (182)
. ......++++||+.+.+++++.+ .+.+.+++.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 1 22345799999999999999998 6999988754
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.2e-17 Score=122.69 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCC-Ccc--------chhhh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-IRP--------YWRCY 81 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 81 (182)
+..++|+|+|+||+|||||+|.|.+.+... ...|.+.....++++++++.+.||+|-.+ ... .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 577999999999999999999999988654 33355566667778999999999999544 111 12345
Q ss_pred cCCCCeEEEEEeCCCcccH--HHHHHHHHHHHhc-----cccCCCeEEEEEeCCCCCCCCCH--HHHHHHhCcccccCCc
Q 030120 82 FPNTEAVIYVVDSSDTDRI--QTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQ 152 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~-----~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 152 (182)
+..+|++++|+|+...+.- -.....+...-.. ..-.+.|++++.||+|+..+... ......... .....
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~~~ 423 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGRSV 423 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccCcc
Confidence 6789999999999433221 1212222222111 11135789999999999654211 100111111 11223
Q ss_pred eE-EEEecCCCCCCHHHHHHHHHHHHh
Q 030120 153 WA-IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~-~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++ ..++|+++++|++.|.+.+.+.+.
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHH
Confidence 33 555999999999999998887654
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.76 E-value=2.5e-17 Score=111.95 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c----cccccceeeEEEECCEEEEEEECCCCCCCcc-------c----hhhh
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------Y----WRCY 81 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~----~~~~ 81 (182)
++|+++|.+|+|||||+|++++..... . ..|.........+.+..+.++||||...... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987543 1 2344455666667889999999999654321 1 1123
Q ss_pred cCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh----CcccccCCceEE
Q 030120 82 FPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL----ELHKIKNRQWAI 155 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~ 155 (182)
...+|++++|+++.+ .+ .....+++.+.+... .-.++++++|++|.......++..... .... ...+-.+
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~-~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL-EKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH-HHhCCeE
Confidence 467899999999986 32 222223333332211 125789999999986543322221111 0000 1111123
Q ss_pred EEec-----CCCCCCHHHHHHHHHHHHhcC
Q 030120 156 FKTC-----AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 156 ~~~S-----a~~~~~v~~l~~~i~~~~~~~ 180 (182)
+..+ +..+.++++|++.|.+.+.++
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 3332 456778999999999988863
No 260
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.4e-17 Score=115.55 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCC-------CCccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-------SIRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d~ 87 (182)
-|+++|-||+|||||++.+...+... ..+|..++...+.. ....|.+-|.||.- .+.......++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 57899999999999999998766433 34455577777765 56779999999932 233344556788999
Q ss_pred EEEEEeCCCccc---HHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCHHHHHHHhCcccccCCceE-EEEecCC
Q 030120 88 VIYVVDSSDTDR---IQTAKEEFHAILE-EEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWA-IFKTCAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 161 (182)
++.|+|++..+. .++......++.. .....++|.++|+||+|+... +..+.+.+.+.. ...+. ...+|+.
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~----~~~~~~~~~ISa~ 316 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAE----ALGWEVFYLISAL 316 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHH----hcCCCcceeeehh
Confidence 999999985542 3333333333322 234457899999999996433 223333333322 11222 1229999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030120 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+++|++++...+.+.+.+.
T Consensus 317 t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 317 TREGLDELLRALAELLEET 335 (369)
T ss_pred cccCHHHHHHHHHHHHHHh
Confidence 9999999999998877654
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.75 E-value=4.3e-17 Score=129.01 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc--CCc------c-------------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM--GEV------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++-.+|+|+|++|+|||||+++|+. +.. . ....|.......+.+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45677999999999999999999973 110 0 01123334445567789999999999998
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+.......+..+|++++|+|+..+...+. ...+..... .+.|+++++||+|+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 877777778889999999999987743322 223333322 46889999999998643
No 262
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=2e-17 Score=113.72 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=110.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccc-ceeeEEEECCEEEEEEECCCCCC-------Cccchhhhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (182)
....++++++|..|+|||||||+++.++..+ ...+.+ ..+....+....+.+||+||.++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4688999999999999999999999766544 222222 22333344668999999999665 344467788
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---------CHHHHHHHhCc-----ccc
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL---------DDAAVSEALEL-----HKI 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---------~~~~~~~~~~~-----~~~ 148 (182)
.+.|.+++++++.++.- ..-...+..+.... .+.++++++|++|...+. ....+.+.+.. ...
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999998742 12222334443332 248999999999986542 01111111110 000
Q ss_pred cCCceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
-..--|++..|.+.++|++++...++..++.+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 112336888889999999999999999988654
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=7.9e-17 Score=106.54 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC---CCCeEEEEEe
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTEAVIYVVD 93 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~v~d 93 (182)
.-.|+++|+.++|||+|+-+|..+.+....+.+..+.....+......++|.|||++.+.-...+++ ++.+++||+|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 3579999999999999999999998887777888888888888888999999999999877777776 7899999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc------------------------
Q 030120 94 SSDT-DRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELH------------------------ 146 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------------ 146 (182)
...- ....+..+.+-.++... .....|++++.||.|+.-....+.+.+.++.+
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~t 197 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFT 197 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 8643 22444444444444433 34678999999999996544432222211100
Q ss_pred -----------cccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 147 -----------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 147 -----------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
........+.++|++++ +++++-+||.+.+
T Consensus 198 lg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 198 LGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01113467899999999 7999999987753
No 264
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=3.8e-16 Score=119.19 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=74.5
Q ss_pred EEEEEEECCCCCCC-----ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
..+.++||||-... .......+..+|+|+||+|+.+..+..+ ..+...++... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 46789999996542 2234557899999999999987543322 23333333321 1259999999999864322
Q ss_pred --HHHHHHHhCcc--cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 136 --DAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.+...+... ........++++||++|.|++.+++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444443222 12233456999999999999999999876
No 265
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.72 E-value=3.3e-16 Score=113.43 Aligned_cols=133 Identities=26% Similarity=0.367 Sum_probs=101.9
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 030120 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
||+++....+.+++..+.+||++|+...+..|..++.++++++||+|+++. .++......+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 355666677777889999999999999999999999999999999999874 4577888888888887777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHHHHHHHhCccc-----ccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 117 KGAVALIFANKQDLPGA------------------LDDAAVSEALELHK-----IKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
.+.|+++++||.|+... ...+.....+.... .....+....++|.+-.+++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 78999999999996321 11122222222111 12356678889999999999999998
Q ss_pred HHHHhc
Q 030120 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 307 ~~~i~~ 312 (317)
T cd00066 307 KDIILQ 312 (317)
T ss_pred HHHHHH
Confidence 887654
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.1e-16 Score=115.56 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------------------------ccc----------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------------------------VVS----------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------------------------~~~----------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+..+|||||+-+|+.+- +.. ..-|++.....++-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3568899999999999999999996221 110 111333333444446
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
...+.++|+|||..+-..+......+|+.++|+|+.+++- ..+.++. .-+.+..+ -..+|+++||.|+.+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC--CceEEEEEEccccccc
Confidence 7889999999999998888888999999999999998741 1122221 11222222 3568999999999865
Q ss_pred CCH--HH----HHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 134 LDD--AA----VSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... ++ +....+........++++++|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 332 22 222222233334468899999999988754
No 267
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.71 E-value=3.6e-16 Score=114.08 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=100.2
Q ss_pred cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhccccC
Q 030120 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+++....+.+.+..+.+||++|+...+..|..++.++++++||+|+++. .++..+...+..++......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 55666667777888999999999999999999999999999999999963 46788888888888877778
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCc-----ccc-cCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 118 GAVALIFANKQDLPGA-----------------LDDAAVSEALEL-----HKI-KNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~-----~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+.|+++++||.|+... .........+.. ... ....+..+.++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999998421 011222222211 111 22456788899999999999999887
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+..
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 76643
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=6.5e-16 Score=114.46 Aligned_cols=78 Identities=27% Similarity=0.305 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c--cccccceeeEEE------------------------ECCEEEEEEECCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
++|+++|.||+|||||+|++.+..... . ..|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999877543 2 223333333222 1236789999999
Q ss_pred CC----CCccc---hhhhcCCCCeEEEEEeCC
Q 030120 71 QT----SIRPY---WRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ~~----~~~~~---~~~~~~~~d~ii~v~d~~ 95 (182)
.. ....+ ....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 22222 233478999999999996
No 269
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=2.7e-16 Score=115.27 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-----------ccccccceeeEEEE-----CCEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-----S-----------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-----------~~~t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
++--+.+|+-+-..|||||..+++... .. . ..-|+......+.| +.+.+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445678999999999999999996322 10 0 11133333333444 3478899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
-.|.-.....+..|.+.++++|++++---+.....+..+- .+.-++-|+||+||+.. +++.+...+... ....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A-dpervk~eIe~~-iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA-DPERVKQEIEDI-IGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC-CHHHHHHHHHHH-hCCC
Confidence 9998888888899999999999999854444444555543 35779999999999765 343444433211 1222
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
....+.+||++|.|++++++.|++.++.+.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 334899999999999999999999998753
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.70 E-value=5.4e-16 Score=122.83 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=77.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcc--------c-------------ccccccceeeEEEECCEEEEEEECCCCCCCccchhhh
Q 030120 23 LGLDNAGKTTILYRLQMGEVV--------S-------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 ~G~~~~GKssl~~~l~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
+|++|+|||||+++|+...-. . ...|+......+.+.+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999543210 0 1123344456677789999999999998887778888
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+..+|++++|+|++++...... ..+..... .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8999999999999987554332 23333222 46899999999998643
No 271
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=5e-17 Score=119.63 Aligned_cols=172 Identities=19% Similarity=0.221 Sum_probs=119.2
Q ss_pred HHhhhhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCc----c-
Q 030120 7 RMFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR----P- 76 (182)
Q Consensus 7 ~~~~~~~--~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----~- 76 (182)
+.+++.+ .++...++++|-||+|||||+|.+......- ..+|.......+.+...+|+++||||.-..- .
T Consensus 156 qhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 156 QHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 3455555 6788899999999999999999998766433 4445557778888889999999999943211 0
Q ss_pred ---chhh-hcCCCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030120 77 ---YWRC-YFPNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 77 ---~~~~-~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
.... ..+--.+|+|+.|++.. .|..+..+.+..+- ....+.|+|+|+||+|+...+...+-.+.+-......
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence 0111 11223689999999864 56777777777763 2236899999999999965544322222221112233
Q ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++++++|+.+.+|+-++-...++.+..+
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 457899999999999988888777766543
No 272
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.69 E-value=5.8e-16 Score=113.29 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=117.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------ccc----------cccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE--VVS-------TIP----------TIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~--~~~-------~~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
--+|+|+-+...|||||+..|+.+. |.. ... |+-..-..+.|++.++.++|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999998654 211 111 111222346778999999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---c--cccCCc
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---H--KIKNRQ 152 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~--~~~~~~ 152 (182)
.+..++=.|++++++|+.++. ..+.+-.+.+.+.. +.+.|+|+||+|.......+.+.+.+.+ . ......
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998764 34555555555553 6777999999999776444333322221 1 113477
Q ss_pred eEEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 153 WAIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
+|++..|++.|+ ++.-||+.|+++++.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 899999999873 6899999999998865
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=5.8e-16 Score=110.04 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=70.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------cccccceee--EEEECC--EEEEEEECCCCCCCcc---c
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRP---Y 77 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~---~ 77 (182)
-.++|+++|++|+|||||+|++++..+... .+|...... .+...+ .++.+|||||...... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876542 223323222 233344 5789999999433211 0
Q ss_pred -----------------------hhhhcC--CCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 78 -----------------------WRCYFP--NTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 78 -----------------------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
....+. ++|+++|+++.+... .... .+.+..+ . ...|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcC
Confidence 001222 478999999887522 2222 2222222 2 258999999999996
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 53
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.67 E-value=2.7e-16 Score=95.33 Aligned_cols=137 Identities=23% Similarity=0.271 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC----CCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
|++++|..|+|||||.+++-|....... |. -+++. +=-.+||||.- .+..........+|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK-TQ-----Ave~~--d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK-TQ-----AVEFN--DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc-cc-----eeecc--CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7899999999999999999877643311 11 11111 11248999943 3333344556789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++++. ....+. .....|+|=|++|+|+.++.........+.+.. .-++|.+|+.++.|++++++.+.
T Consensus 75 nd~~s~--f~p~f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccc------cccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 998652 111111 113456999999999986544444444443332 34699999999999999999886
Q ss_pred H
Q 030120 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 5
No 275
>PRK13768 GTPase; Provisional
Probab=99.65 E-value=1.5e-15 Score=106.75 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=75.4
Q ss_pred EEEEEEECCCCCCCc---cchhh---hcCC--CCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIR---PYWRC---YFPN--TEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.++.+||+||+.... ..+.. .+.. .+++++++|+....+..... .++....... ..+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 479999999976532 22222 2222 89999999997654333322 2222211111 1478999999999997
Q ss_pred CCCCHHHHHHHhCc-------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 132 GALDDAAVSEALEL-------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+....++....+.. ........+++++|++++.|+++++++|.+.++.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 65444443333321 00112335799999999999999999999988654
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.65 E-value=2e-15 Score=108.94 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=94.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccccccc-------------------ce-eeE----------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIG-------------------FN-VET---------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~~-------------------~~-~~~---------- 55 (182)
..+.+.|+|.|++|+|||||++.+... .+. ...|+.. .. ...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 467889999999999999999987421 110 0111000 00 000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.++||+|....... ....+|.++++.++..++.+...... ++ ....++|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEE
Confidence 0113679999999997633322 45679999999876655444443321 21 1224899
Q ss_pred EeCCCCCCCCCHHH----HHHHhCccccc--CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGALDDAA----VSEALELHKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+.+...... +...+...... ....+++.+||+++.|++++++.|.+.++
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999875433222 22222221111 12247999999999999999999998754
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.63 E-value=7.2e-15 Score=101.72 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=87.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
......|+++|.+|+|||||++.+.+..-.. .....+. .......+.++.++||||.. .......+.+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 4566789999999999999999998653221 1111111 11222367889999999853 22334468899999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCCCCC-HHHHHHHhCcccc--cCCceEEEEecCCCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (182)
|+..+..... ..+...+.. .+.|. ++|+||+|+.+... ..++...+..... ...+.+++.+||++.-
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9987643222 222333332 34564 55999999864322 2233333322111 2345689999999874
No 278
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.62 E-value=5.4e-15 Score=106.26 Aligned_cols=135 Identities=25% Similarity=0.407 Sum_probs=104.0
Q ss_pred ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc----------cHHHHHHHHHHHHhcc
Q 030120 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----------RIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (182)
..+|+|+....+.+++.++.++|++||..-+.-|.+++.+++++|||+++++.+ ++..+...+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 345778888888999999999999999999999999999999999999998533 4667778888888888
Q ss_pred ccCCCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCc-----ccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGA-----------------LDDAAVSEALEL-----HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+..+.++|+++||.|+.++ ...++...++.. .......+.+..+.|.+-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8889999999999998432 011222222211 111124566777889999999999999
Q ss_pred HHHHHhc
Q 030120 173 LSNTLKS 179 (182)
Q Consensus 173 i~~~~~~ 179 (182)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 8887654
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.1e-15 Score=107.12 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=111.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeE--------------------EEE------CCEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVET--------------------VQY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~--------------------~~~------~~~~ 62 (182)
+..++|+++|+...|||||..++.+-..... .-|+...+.. ... --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976432110 0011000000 000 0247
Q ss_pred EEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HH
Q 030120 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AA 138 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~ 138 (182)
+.|+|.|||+.+-..+.+...-.|+.++|++++.+....+..+.+..+- -.+ -..++++-||+|+...+.. ++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig--ik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG--IKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc--cceEEEEecccceecHHHHHHHHHH
Confidence 8899999998776666655566799999999998877666666655542 222 2568999999999754322 22
Q ss_pred HHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
+.+.++-- ...+.|++++||.++.|++.+++.|.+.++...|
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 22222211 2356789999999999999999999999886643
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.60 E-value=4.9e-15 Score=102.98 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=61.8
Q ss_pred EEEEEECCCCCCCccchhhhc--------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+.++|||||.++...+.... ...-++++++|.....+.......+...+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 899999999987765554333 345688999998754332222222111111122247999999999999762
Q ss_pred CCH--------------------HHHHHHhCcccccCCce-EEEEecCCCCCCHHHHHHHHHHHH
Q 030120 134 LDD--------------------AAVSEALELHKIKNRQW-AIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 134 ~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
... ..+...+.......... .++++|+.+++++++++..+.+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 111 11112222222223344 799999999999999999988764
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.59 E-value=4.1e-14 Score=114.69 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=91.0
Q ss_pred CCHHHHHHHHhcCCcccc---cccccceeeEEEEC------------------CEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 28 AGKTTILYRLQMGEVVST---IPTIGFNVETVQYN------------------NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 28 ~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~------------------~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
++||||+.++.+-..... .-|..+....+..+ ...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987776541 11333332223221 123899999999999887777888899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHHHHHHh---------
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAAVSEAL--------- 143 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~~~~--------- 143 (182)
++++|+|++++...+ ....+. .+.. .+.|+++|+||+|+..... .+.....+
T Consensus 552 ivlLVVDa~~Gi~~q-T~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQ-TIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHh-HHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998753211 111222 2222 3689999999999953211 01111111
Q ss_pred --Cccc----------ccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 144 --ELHK----------IKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 144 --~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.... .-....+++++||++|+|+++|...|..
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1110 0124578999999999999999988754
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.59 E-value=8.6e-15 Score=116.44 Aligned_cols=121 Identities=18% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----ccccccceee----EEEECCE
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG---------------EVVS----TIPTIGFNVE----TVQYNNI 61 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~ 61 (182)
+.++++. ..+..+|+++|+.++|||||+++|+.. .+.. ...|+..... .+.+.+.
T Consensus 9 ~~~~~~~--~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~ 86 (720)
T TIGR00490 9 IKELMWK--PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEY 86 (720)
T ss_pred HHHHhhC--cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCce
Confidence 3444442 356789999999999999999999742 1111 1113222211 2344678
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+.+|||||+..+.......++.+|++++|+|+.++..... ...+..... .+.|.++++||+|...
T Consensus 87 ~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 87 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99999999999988888889999999999999987643222 222222222 3578899999999853
No 283
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.59 E-value=3.3e-14 Score=97.85 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=99.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------ccc---------ccc-----------------ceeeEE
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--------TIP---------TIG-----------------FNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--------~~~---------t~~-----------------~~~~~~ 56 (182)
++..++..-|+++|..|+|||||+.+|...-... ..| .++ ++-..+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 4456788899999999999999999995321111 111 000 000000
Q ss_pred -------------------EECCEEEEEEECCCCCCC------ccchhhh--cCCCCeEEEEEeCCCc---ccHHHHHHH
Q 030120 57 -------------------QYNNIKFQVWDLGGQTSI------RPYWRCY--FPNTEAVIYVVDSSDT---DRIQTAKEE 106 (182)
Q Consensus 57 -------------------~~~~~~~~~~D~~g~~~~------~~~~~~~--~~~~d~ii~v~d~~~~---~s~~~~~~~ 106 (182)
.....++.++|||||-.. ....-.. ....-+++|++|.... -+|....-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 002357899999996432 1111111 1335788999998543 344444444
Q ss_pred HHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh-------Ccccc----------------cCCceEEEEecCCCC
Q 030120 107 FHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL-------ELHKI----------------KNRQWAIFKTCAIKG 163 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-------~~~~~----------------~~~~~~~~~~Sa~~~ 163 (182)
.-.++.. .+.|.+++.||+|+.+.....+....+ ..... -......+-+|+.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 4444443 679999999999998764432222211 11000 014567899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030120 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~ 178 (182)
.|.+++|..+.+.+.
T Consensus 250 ~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVD 264 (366)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999887654
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=6.2e-14 Score=98.06 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=75.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----cccccceeeEEEECCEEEEEEECCCCCCCcc---c-------hh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---Y-------WR 79 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~~ 79 (182)
....++|+++|.+|+|||||+|++++...... ..|...........+.++.+|||||...... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 46789999999999999999999999875431 2233334444556788999999999664421 1 12
Q ss_pred hhcC--CCCeEEEEEeCCCcc-cHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 80 CYFP--NTEAVIYVVDSSDTD-RIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++. ..|+++||..++... +.. ...+.+.+.+... --.++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 2332 578888887665432 111 2233333332211 11469999999998644
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.3e-14 Score=101.78 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=100.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------cccccccceeeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV------------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~ 58 (182)
...++++.+|+..-||||||-+|+...-. +..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999733200 011134444444444
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 136 (182)
.+.+|.+.|||||++|...+...-.-||+.|+++|+..+ ..........+....+ =+.+++.+||+||.+....
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 789999999999999998888888999999999999766 2222222222222222 2578999999999865332
Q ss_pred HHHHHHhC-c-ccccCCceEEEEecCCCCCCHH
Q 030120 137 AAVSEALE-L-HKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 137 ~~~~~~~~-~-~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+++...+. . .........++++||+.|.|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22222221 1 1112344579999999998764
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.57 E-value=2.1e-14 Score=104.58 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc----cccceeeEEEE-CCEEEEEEECCCCCCCccchhhh-----c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP----TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCY-----F 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (182)
...++|+|+|.+|+|||||||+|.|-.... ..+ .++.....+.. ..-++.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 567899999999999999999997633221 111 11223333333 33569999999965544444443 4
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-------C--CCCH----HHHHHHhCc--cc
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-------G--ALDD----AAVSEALEL--HK 147 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-------~--~~~~----~~~~~~~~~--~~ 147 (182)
...|.+|++.+-. |....-++...+.. .++|+++|-||+|.. . .-.. +++.+.... ..
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 5679888876543 44444444433333 579999999999961 0 1111 222222111 11
Q ss_pred ccCCceEEEEecCCCC--CCHHHHHHHHHHHHhcCC
Q 030120 148 IKNRQWAIFKTCAIKG--EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--~~v~~l~~~i~~~~~~~~ 181 (182)
......++|.+|+.+- +++..|.+.|.+.++..+
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1234457999998874 568899999998887654
No 287
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.57 E-value=2.1e-14 Score=98.58 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----cccccceeeEEEECCEEEEEEECCCCCCCccc-------h----hhh
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-------W----RCY 81 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~----~~~ 81 (182)
++|+++|.+|+||||++|.+++...... ..|.........+.+..+.++||||-...... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999999885442 22455666666789999999999994322111 1 123
Q ss_pred cCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----HhCcccccCCceE
Q 030120 82 FPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE-----ALELHKIKNRQWA 154 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~~ 154 (182)
....|++++|+++. ..+ .....+++..++.... -..++|+.|..|.......++... .+.... ...+-.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li-~~c~~R 156 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELI-EKCGGR 156 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHh-hhcCCE
Confidence 45689999999998 322 2233344444443221 135888889888765544322222 111111 111223
Q ss_pred EEEecCC------CCCCHHHHHHHHHHHHhcC
Q 030120 155 IFKTCAI------KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 155 ~~~~Sa~------~~~~v~~l~~~i~~~~~~~ 180 (182)
+...+.+ ....+.+|++.+-+.+.++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 5555544 2345788888887776654
No 288
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=1.2e-13 Score=98.17 Aligned_cols=117 Identities=9% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccc--ccceeeEEEECCEEEEEEECCCCCCCccc-------hhhhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPY-------WRCYF 82 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~ 82 (182)
..+.++|+++|.+|+||||++|+++++.... ..++ ...........+.++.++||||....... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999987532 2222 22222334457889999999997654221 11111
Q ss_pred --CCCCeEEEEEeCCCccc--H-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 83 --PNTEAVIYVVDSSDTDR--I-QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s--~-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...|+++||..++.... . ....+.+...+... --.+.++++|++|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999966543211 1 22222333332211 1246899999999764
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.55 E-value=8e-14 Score=111.24 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------cc-------ccccceeeEEEE----CCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--S----------TI-------PTIGFNVETVQY----NNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~----------~~-------~t~~~~~~~~~~----~~~~~~~~D~~g 70 (182)
.++..+|+++|+.++|||||+++++...-. . .. -|+......+.+ .+..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 356678999999999999999999753211 0 00 012222222333 467889999999
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
+..+.......++.+|++++|+|+..+... .....+..... .+.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 999988888889999999999999876432 22333333322 246789999999975
No 290
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=100.73 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCc---------------ccccc--------cccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ--MGEV---------------VSTIP--------TIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~--~~~~---------------~~~~~--------t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.++-..+|+-+|.+|||||...|+ ++-+ .+++- ++......++|.+..+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 355678999999999999999985 1111 01111 2223445567789999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
||+.+..-+...+.-+|.+++|+|+..+ ++.....+.++.+. .++|++-++||.|....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccC
Confidence 9999999888889999999999999987 33433333344333 58999999999998654
No 291
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=7.4e-14 Score=101.89 Aligned_cols=154 Identities=20% Similarity=0.099 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
-|+..|+-..|||||+..+.+..-.. ...|++..+...+..+..+.++|+||++++-..........|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999998765322 334555666666667779999999999999988888888999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+++++-. ........++...+ ....++|+||+|..+....++....+..... ....++|.+|+.+|+|+++|.+.
T Consensus 82 ~~deGl~--~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLM--AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcc--hhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 9976632 22222222333322 3456999999999765333333332221111 45567899999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99876
No 292
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2e-13 Score=96.93 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccc-------cccceeeEEEE---------CCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIP-------TIGFNVETVQY---------NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~-------t~~~~~~~~~~---------~~~~~~~~D~~g~~~~ 74 (182)
.+.+++++++|...+|||+|.+++..-.... ..| |.+.....+.+ +...+.++|+|||..+
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4567999999999999999999996432111 111 11111111211 3457799999999888
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHhC--ccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALE--LHK 147 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~--~~~ 147 (182)
.........-.|..++|+|+..+.--+... ..+-++ .-...++|+||+|+..+... ++....++ ...
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 777776677789999999998663222221 111222 12457899999998654322 11111111 111
Q ss_pred cc-CCceEEEEecCCCC----CCHHHHHHHHHHHHhcCCC
Q 030120 148 IK-NRQWAIFKTCAIKG----EGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 148 ~~-~~~~~~~~~Sa~~~----~~v~~l~~~i~~~~~~~~~ 182 (182)
.. ..+.|++++||..| +++.++.+.+.+.+-++.|
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 11 23478999999999 7888888888887765543
No 293
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.53 E-value=2.3e-14 Score=98.57 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=95.4
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCc--cccccccc---------------------ceee
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM------GEV--VSTIPTIG---------------------FNVE 54 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~------~~~--~~~~~t~~---------------------~~~~ 54 (182)
+++++++. ..+.+.|+|.|+||+|||||++.|.. ..+ ....|+.. ....
T Consensus 18 ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 18 LLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp HHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred HHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 34444442 35788999999999999999999952 111 01111111 1111
Q ss_pred EEEE--------------------CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcc
Q 030120 55 TVQY--------------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 55 ~~~~--------------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (182)
.+-- .++++.+++|.|--+... ....-+|.+++|..+.-++..+....-+.++.
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--- 169 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--- 169 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---
Confidence 1111 267999999998544332 23466899999999998887777776666652
Q ss_pred ccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGAL-DDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
-++|+||+|..... ...++...+.... ......+++.+||.++.|++++++.|.++
T Consensus 170 ------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 170 ------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp ------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 39999999953221 1133333333222 22344689999999999999999999875
No 294
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=9.1e-14 Score=96.61 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----------ccc-------ccccccceeeEEEE--CCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE----------VVS-------TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~----------~~~-------~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
...++|+.+|..+.|||||..++...- +.+ ....+.++...+.| .+..+..+|+|||.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 567899999999999999988884211 111 11133344455555 67889999999999998
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHHHhCcccccC
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----AAVSEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
......-.+.|+.|+|+++.++.- .+.++.+.-. ++. .-..+++++||+|+.++.+. .++.+.+.......
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLla-rqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhh-hhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 877777788999999999998742 2222222111 221 12368899999999875332 34445555555566
Q ss_pred CceEEEEecCCCCC--------CHHHHHHHHHHHHhcCCC
Q 030120 151 RQWAIFKTCAIKGE--------GLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~~~~~ 182 (182)
...|++.-||+..- .+.+|++.+.+.++.+.|
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 77889998887642 367888888887776543
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.53 E-value=7.3e-14 Score=112.79 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------c-------ccccccceeeEEEE----------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV------------S-------TIPTIGFNVETVQY---------------- 58 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~---------------- 58 (182)
.++..+|+|+|+.++|||||+++|+...-. . ...|.......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 567789999999999999999999754311 0 00011111222333
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..+.++|||||..+.......++.+|++++|+|+..+-.... ...+..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25678999999999998888888999999999999998743332 233333333 478999999999986
No 296
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.52 E-value=8.9e-13 Score=89.52 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHH
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 137 (182)
..+..++++.|..-...... .-+|.++.|+|+.+.++... .....+ ...-++++||+|+.+. ....
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHH
Confidence 35677888888432222222 12588999999998755321 111111 1234899999999753 2233
Q ss_pred HHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.+.+..... ....+++++||++|+|++++++++.+++.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333322 34567999999999999999999998653
No 297
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=4.6e-13 Score=98.58 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCCCCC-
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTS- 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 73 (182)
.+.++|+++|.||+|||||+|++.+..... ...|...+...+.+. ...+.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 677899999999999999999998766433 233445666666553 23589999999432
Q ss_pred ------CccchhhhcCCCCeEEEEEeCC
Q 030120 74 ------IRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222344567899999999983
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.51 E-value=1.2e-13 Score=111.35 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c--c---------------cccccceeeEEEEC----------CEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--S--T---------------IPTIGFNVETVQYN----------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~--~---------------~~t~~~~~~~~~~~----------~~~~~ 64 (182)
.++..+|+++|+.++|||||+++|+...-. . . ..|+......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 356679999999999999999999863210 0 0 00111111223332 56789
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
++||||+..+.......++.+|++++|+|+..+-..+ ....+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999888888899999999999998874333 2333343333 368999999999986
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.4e-13 Score=101.31 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=101.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC----------------------cc--c----------ccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGE----------------------VV--S----------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~----------------------~~--~----------~~~t~~~~~~~~~~ 58 (182)
.+...++++++|..++|||||+.+++..- +. - ..-|.......++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34578899999999999999999996211 00 0 00011122222333
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---H--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I--QTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
....+.+.|.|||..|...+......+|+.++|+|++...= | .........+++..+ -..++|++||.|+.++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 66789999999999998888888899999999999985431 1 111222333344433 3568999999999776
Q ss_pred CCH--HHHH----HHh-CcccccCCceEEEEecCCCCCCHHH
Q 030120 134 LDD--AAVS----EAL-ELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~~~----~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... +++. ..+ ....+....+.+++||+.+|+|+-.
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 432 2222 222 3344455667899999999998654
No 300
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.49 E-value=1e-12 Score=91.87 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=101.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------c--ccccccccceee---------------------EE--------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------V--VSTIPTIGFNVE---------------------TV-------- 56 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------~--~~~~~t~~~~~~---------------------~~-------- 56 (182)
..+...|+|.|.||+|||||+..|...- + ....|+..+.-. .+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 3567799999999999999999995321 0 111221111110 00
Q ss_pred ------------EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 57 ------------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 57 ------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+-.++++.|++|.|--+.... ...-+|.++++.-+.-++..+....-+.++- -++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heee
Confidence 002679999999985544432 3355899999999888877777777666663 3999
Q ss_pred EeCCCCCCCC-CHHHHHHHhCcc----cccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGAL-DDAAVSEALELH----KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||.|..... ...++...+... .......+++.+||.+|+|++++++.+.++..
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999964321 112333333222 23345668999999999999999999988653
No 301
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.47 E-value=6.8e-13 Score=88.05 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=44.0
Q ss_pred EEEEEEECCCCCC----CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 61 IKFQVWDLGGQTS----IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 61 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
..+.++||||... ....+..++..+|+++||.++++..+-.....+.... .. .....++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 4688999999533 2356778889999999999999976544444333333 22 234589999985
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.46 E-value=6.6e-13 Score=95.77 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=65.8
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 138 (182)
.+.++.++||+|..... ......+|.++++.....++ ........+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999854222 23456778888886554332 222222222 3567899999999975432211
Q ss_pred HHHH----hCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 139 VSEA----LELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 139 ~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.... +..... .....+++++||+++.|++++++++.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 111111 12223689999999999999999998864
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.46 E-value=4.8e-13 Score=91.66 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=87.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---c-c---ccc--ccc--------ceeeEE------------------
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV---V-S---TIP--TIG--------FNVETV------------------ 56 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~---~-~---~~~--t~~--------~~~~~~------------------ 56 (182)
........++++|..|+|||||+++++.... . . ... ..+ .....+
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 3445677889999999999999999974310 0 0 000 000 000000
Q ss_pred --EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 57 --QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 57 --~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
...+.++.+++|.|.-.... .+....+..+.++|+.+.+.... . .... ...|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccc
Confidence 00135778888888211111 11123456677888876542111 0 1111 245789999999996532
Q ss_pred C--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 135 D--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
. ..++...+.. .....+++++||+++.|++++++++.+..
T Consensus 165 ~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 GFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 1 2233333222 12456899999999999999999998753
No 304
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.43 E-value=4e-12 Score=95.02 Aligned_cols=130 Identities=25% Similarity=0.391 Sum_probs=96.6
Q ss_pred cccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 030120 48 TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
|+++....+.+ ....+.++|++|+...+.-|..++.++++||||+++++- .++.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 34566667777 889999999999999999999999999999999998632 3477888899999988888
Q ss_pred CCCeEEEEEeCCCCCC----C----------------CCHHHHHHHhCcc-----cccC--CceEEEEecCCCCCCHHHH
Q 030120 117 KGAVALIFANKQDLPG----A----------------LDDAAVSEALELH-----KIKN--RQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~----~----------------~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~~~~v~~l 169 (182)
.+.|+++++||.|+.. . ...+.....+... .... ..+.+..++|.+..+++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999721 1 1112222222211 1111 5567889999999999999
Q ss_pred HHHHHHHH
Q 030120 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~i~~~~ 177 (182)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99988754
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.43 E-value=1.4e-12 Score=92.75 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc-----------ccccceeeEEEE--C--CEEEEEEECCCCCCCcc---ch
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP---YW 78 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~---~~ 78 (182)
.++|+|+|.+|+|||||+|.|++....... ++..+....... . ..++.++||||...... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987654321 122233222222 2 35778999999332111 01
Q ss_pred h------------------------hhcCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 79 R------------------------CYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ~------------------------~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
. ..=.++|+++|+++++... +.... ..+..+ . ...++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence 0 0113569999999987542 22222 233333 2 35889999999998654
Q ss_pred CC
Q 030120 134 LD 135 (182)
Q Consensus 134 ~~ 135 (182)
.+
T Consensus 158 ~e 159 (281)
T PF00735_consen 158 EE 159 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=6e-12 Score=91.81 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=56.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-----------------EEEEEEECCCCCCC---
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 74 (182)
++++++|.||+|||||+|++.+..... ...|...+...+.+.. ..+.++|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 3335456655555533 25899999994321
Q ss_pred ----ccchhhhcCCCCeEEEEEeCC
Q 030120 75 ----RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 ----~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334568899999999984
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-12 Score=100.91 Aligned_cols=156 Identities=22% Similarity=0.181 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-----ccccccceeeEE----------------EECCEEEEEEECCCCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETV----------------QYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~----------------~~~~~~~~~~D~~g~~~~ 74 (182)
+..-+||+|+..+|||-|+..+-+.++.. ....++.++... .+.--.+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 44568999999999999999997765433 111222222111 123346788999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-----CCH-------------
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-----LDD------------- 136 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~------------- 136 (182)
..+.......||.+|+|+|+-.+-..+. ...+. +++ ..+.|.|+.+||+|..-. ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqt-iESi~-lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQT-IESIN-LLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcch-hHHHH-HHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 9999999999999999999976521111 11111 222 257899999999997421 000
Q ss_pred HHHHHH-------hCc----------ccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 137 AAVSEA-------LEL----------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 137 ~~~~~~-------~~~----------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.++... ++. .......+.++++||.+|+||.+|+.+|++.
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 111111 110 0111245789999999999999999998864
No 308
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.41 E-value=1.1e-11 Score=87.57 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=104.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE------CCEEEEEEECCCCCCCccchhhhcCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
+..-+|+++|+.++|||||+.+|.+.+..... .+..+..+.+ .-.++.+|-..|......+....+..
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~Kkg--sgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKG--SGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccCCC--CCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 35678999999999999999999887633333 3333433333 23577788888865444444333322
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhc---------------------------------------------------
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE--------------------------------------------------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------- 113 (182)
-..+|++.|.++++..-...+.|..++.+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 25788899999997654443333322221
Q ss_pred ----------cccCCCeEEEEEeCCCCCC-----CCCHHHHHHHhC---cccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 114 ----------EELKGAVALIFANKQDLPG-----ALDDAAVSEALE---LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 114 ----------~~~~~~~iivv~nK~D~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+-++|+++|++|||... ++-.++-.+.++ ..++...+...+.+|++...|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 1223689999999999831 111222222222 1223346778999999999999999999998
Q ss_pred HHh
Q 030120 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
+..
T Consensus 288 r~y 290 (473)
T KOG3905|consen 288 RSY 290 (473)
T ss_pred Hhc
Confidence 754
No 309
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=5.5e-12 Score=88.34 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
+++..+.+.+++++|++++|+|+.++. ++.....|+..+.. .+.|+++|+||+||.+..... .+... .. ..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~--~~~~~-~~-~~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDME--KEQLD-IY-RN 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHH--HHHHH-HH-HH
Confidence 556666777899999999999999887 78888888765532 478999999999996432111 11111 11 12
Q ss_pred CceEEEEecCCCCCCHHHHHHHHHH
Q 030120 151 RQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.+++++||++|.|++++++.+.+
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 4568999999999999999988764
No 310
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.9e-12 Score=89.75 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=112.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc----------CCccc-------ccccccceeeEEEE--CCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM----------GEVVS-------TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~----------~~~~~-------~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....+|+-+|....|||||..++.. .++.+ ....+.++...+.| ....+.-.|||||.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4678999999999999999888741 11211 22244566677777 55777889999999998
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHHHhCcccccC
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----AAVSEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
.........-|+.|+|+.++|+.- .+.++.+... ++.+. ..+++++||.|+.++.+. -++.+.+.......
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLA-rQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLA-RQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHH-HHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 888888888999999999999853 3344333222 33332 568999999999754332 23344445555667
Q ss_pred CceEEEEecCCC---CC-------CHHHHHHHHHHHHhcCC
Q 030120 151 RQWAIFKTCAIK---GE-------GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 151 ~~~~~~~~Sa~~---~~-------~v~~l~~~i~~~~~~~~ 181 (182)
.++|++.-||+- |. .|.+|++.+.++++.+.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 888999988754 31 26677777777666543
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=2.9e-12 Score=86.29 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=100.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----cccccccceeeEEEE-CCEEEEEEECCCCCCCcc-----chhhhcCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 85 (182)
..-||+++|.+|+||||+=..++..... ....|+++....+.+ .+.-+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999987766644422 255566666666666 557889999999985422 234578899
Q ss_pred CeEEEEEeCCCccc---HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---ccccCCceEEEEec
Q 030120 86 EAVIYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---HKIKNRQWAIFKTC 159 (182)
Q Consensus 86 d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S 159 (182)
++++++||+...+- +....+.++.+++.. +...+...++|.|+......+.+.+.... .......+.++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999987642 222333444444432 56789999999999766554443332211 11123446788888
Q ss_pred CCCCCCHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSN 175 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~ 175 (182)
--+.. +-..+..+..
T Consensus 161 iwDet-l~KAWS~iv~ 175 (295)
T KOG3886|consen 161 IWDET-LYKAWSSIVY 175 (295)
T ss_pred hhhHH-HHHHHHHHHH
Confidence 65443 3333444443
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1e-11 Score=97.49 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--c------c------c-------ccccccceeeEEEECC-EEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--V------V------S-------TIPTIGFNVETVQYNN-IKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~------~------~-------~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 71 (182)
..+..+|+|+|+..+|||||..+++-.. . . . ..-|+.....++.+++ ..+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4677899999999999999999996321 1 0 0 0012233334566675 99999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
-+|.......++-+|+++.|+|+..+-.. +....|++..+ .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 99999999999999999999999887432 23334444433 47999999999998654
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.34 E-value=1.2e-11 Score=87.42 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 118 GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
..+-++|+||+|+.+.. ..++..............+++++||++|+|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999997532 12233333322233456789999999999999999999874
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=6.3e-11 Score=86.94 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------c--cc---cccccee---eEEEE-----CCEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-----NNIKFQ 64 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~~-----~~~~~~ 64 (182)
..++.|+++|+.++|||||+|+|.+. +.. + .. .|+++.. ..++. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 56789999999999999999999877 322 1 12 3444444 33433 237999
Q ss_pred EEECCCCCC--------Ccc------c---------------hhhhcC-CCCeEEEEE-eCC----CcccHHHH-HHHHH
Q 030120 65 VWDLGGQTS--------IRP------Y---------------WRCYFP-NTEAVIYVV-DSS----DTDRIQTA-KEEFH 108 (182)
Q Consensus 65 ~~D~~g~~~--------~~~------~---------------~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~~~ 108 (182)
++||+|... ... . +...+. ++++.++|. |.+ .++..... ..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 111 0 233445 789999998 664 11112333 33433
Q ss_pred HHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC--CCCHHHHHHHHHHHH
Q 030120 109 AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK--GEGLFEGMDWLSNTL 177 (182)
Q Consensus 109 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~ 177 (182)
++ +. .++|.++++||.|-.... ..++...+. ...+.+++.+|+.. ...+..+++.++..+
T Consensus 175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 33 33 479999999999943222 222222221 12234566666644 445666666655433
No 315
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=4.3e-12 Score=79.84 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=76.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cc-ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+|++++|..|+|||+|+.++....+.. .. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999997666654 22 3332 2333455678889999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+..++... |...+... ...+.|.++++||.|+.+.. .+.... ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 98877544 55444433 22468899999999974321 111111 1136788999999875
No 316
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=1.5e-10 Score=87.50 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE------CCEEEEEEECCCCCCCccchhhhcCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
...-+|+|+|..++|||||+.+|.+.+- ..++.+..|..+++ ...++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 4567999999999999999999976542 33445544444444 23578999998865555554433332
Q ss_pred CCeEEEEEeCCCcccHHHH-HHHHHHHHhc--------------------------------------------------
Q 030120 85 TEAVIYVVDSSDTDRIQTA-KEEFHAILEE-------------------------------------------------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~-------------------------------------------------- 113 (182)
--++++|+|.+.|+.+-.. ..|+. +++.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~-vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLS-VLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2678889999999865322 22221 1110
Q ss_pred ------------cccCCCeEEEEEeCCCCCCC-----CCHHHHHHHhC---cccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 114 ------------EELKGAVALIFANKQDLPGA-----LDDAAVSEALE---LHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 114 ------------~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
..+-++|++||++|+|.... ...++-.+.+. ...+-..+..++.||++...+++.|+.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 00114799999999997321 01111111111 12223467789999999999999999999
Q ss_pred HHHHhc
Q 030120 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 260 ~h~l~~ 265 (472)
T PF05783_consen 260 LHRLYG 265 (472)
T ss_pred HHHhcc
Confidence 887754
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.32 E-value=1.7e-10 Score=80.17 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.1
Q ss_pred EEEEEEECCCCCCC-------------ccchhhhcCC-CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 61 IKFQVWDLGGQTSI-------------RPYWRCYFPN-TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.++.++||||.... ..+...|+++ .+++++|+|+...............+ . ..+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEE
Confidence 68899999996421 1234567774 46999999987653333322222222 2 24689999999
Q ss_pred CCCCCCC
Q 030120 127 KQDLPGA 133 (182)
Q Consensus 127 K~D~~~~ 133 (182)
|+|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=3.4e-11 Score=92.94 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---c-cccccceeeEEEECCEEEEEEECCCCCCCc-------cc---hhh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PY---WRC 80 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~ 80 (182)
+...+|+++|.+|+||||++|+++++.... . ..|+..........+..+.++||||..... .. ...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 345789999999999999999999987433 1 123333222334477899999999965431 11 122
Q ss_pred hcC--CCCeEEEEEeCCCcccHHH---HHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 81 YFP--NTEAVIYVVDSSDTDRIQT---AKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 81 ~~~--~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++. .+|++|+|..+........ ..+.+.+++...- =..+|||.|..|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 333 4799999988763322112 2223333332211 1468999999998753
No 319
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.29 E-value=5.5e-11 Score=89.71 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=100.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc----ceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...++.+++.++|+.++|||.++++++++.+.. ...+.. ++..........+.+-|.+-. ....+...- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 345788899999999999999999999988766 323332 222222224456667777654 333333333 7799
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-----CHHHHHHHhCcccccCCceEEEEecCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++++||.+++.++......+...... .+.|+++|.+|+|+.+.. .+.++...++.. +.+.+|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccC
Confidence 999999999999998888776666443 579999999999996432 123333332211 24556666
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
.... .++|..|...
T Consensus 568 ~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 568 TLSS-NELFIKLATM 581 (625)
T ss_pred CCCC-chHHHHHHHh
Confidence 4333 6777777654
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.28 E-value=9.9e-12 Score=81.91 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC---ccc-----cccc----------cc-----ceee-EE----------------
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE---VVS-----TIPT----------IG-----FNVE-TV---------------- 56 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~---~~~-----~~~t----------~~-----~~~~-~~---------------- 56 (182)
-++|.+.|++|+|||+|+.+++..- +.. +.-| .+ .... ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4789999999999999999986321 110 0001 00 0000 00
Q ss_pred EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCCCC
Q 030120 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
.+...++.+++..|. ....-++.-..+.-+||+|++.++.. . .+ ..... ..-++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~---P------~K~gP~i~-~aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI---P------RKGGPGIF-KADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC---c------ccCCCcee-EeeEEEEehHHhHHHhC
Confidence 001135566666661 11111122233589999999987431 1 11 11111 25699999999976544
Q ss_pred H--HHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 136 D--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
. +......+ ......+++++|+++|+|++++++++....
T Consensus 160 ~dlevm~~da~---~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAK---EVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHH---HhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 33333332 234667899999999999999999987653
No 321
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=3e-10 Score=77.78 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCC-------CccchhhhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 84 (182)
....+|+++|-|.+|||||+..+..-.... ...|.......+.+++..+++.|.||.-. .........+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 355799999999999999999997654332 44455566778888999999999999322 12334445677
Q ss_pred CCeEEEEEeCCCcc
Q 030120 85 TEAVIYVVDSSDTD 98 (182)
Q Consensus 85 ~d~ii~v~d~~~~~ 98 (182)
+|.+++|.|++..+
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 99999999998753
No 322
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.4e-11 Score=79.73 Aligned_cols=159 Identities=22% Similarity=0.284 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccc---hhhhcCCCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY---WRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii~ 90 (182)
.+|+++|...+||||+....+.+..+. ..+|..+....+.-.-.++++||.|||-.+-.. ....++++.+.+|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999998887766443 223333444444445688999999998765433 3567899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHh--ccccCCCeEEEEEeCCCCCCCCCH--------HHHHHHhCcccccCCceEEEEecC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILE--EEELKGAVALIFANKQDLPGALDD--------AAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+|+.+. .......+..... ..-++++.+-+.+.|.|...+... +...+.++..........++.+|-
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999766 2333322222222 233467889999999998654322 222222332333344566777876
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
.+. ++-+.|..+.+++.+
T Consensus 186 yDH-SIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIP 203 (347)
T ss_pred cch-HHHHHHHHHHHHHhh
Confidence 554 488888887776543
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.6e-10 Score=81.18 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE------------------CCEEEEEEECCC-----
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY------------------NNIKFQVWDLGG----- 70 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (182)
.++++|||-||+|||||.|++....... ...|++++.....+ ....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998777432 33366666655544 125788999998
Q ss_pred --CCCCccchhhhcCCCCeEEEEEeCC
Q 030120 71 --QTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.+.+......-++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3455666777789999999999986
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=84.16 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc----------------cccceeeEEEE------------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP----------------TIGFNVETVQY------------------ 58 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~----------------t~~~~~~~~~~------------------ 58 (182)
.+..+.+++.|+.++|||||+-.|..+.... ... +.+.....+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 5678899999999999999999997554221 111 11122222111
Q ss_pred -----CCEEEEEEECCCCCCCccchhh--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 -----NNIKFQVWDLGGQTSIRPYWRC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+.-+.++||.||+.+...... .-++.|..++++.++++-+ ...+....+... ...|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 2356789999999998766544 3367899999999998843 333322223222 468999999999997
Q ss_pred CCCCHHHHHH----HhCcc--------------------cccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 132 GALDDAAVSE----ALELH--------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 132 ~~~~~~~~~~----~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++...+.+.+ .++.. .....-.|+|.+|+.+|.|++-| +.+...++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCc
Confidence 6544322222 22110 01122478999999999998754 444444544
No 325
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.24 E-value=1.9e-11 Score=86.41 Aligned_cols=76 Identities=24% Similarity=0.252 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-----------------EEEEEECCCCCCC-----
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-----------------KFQVWDLGGQTSI----- 74 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~~----- 74 (182)
++++|.||+|||||+|++.+..... ...|.+.+...+.+.+. .+.++|+||....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999877633 33355666666665432 4899999994321
Q ss_pred --ccchhhhcCCCCeEEEEEeCC
Q 030120 75 --RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 --~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122334567899999999873
No 326
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.22 E-value=2.3e-11 Score=85.93 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=100.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCCCcc--------chhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
.....-|+++|-.|+|||||+++|.+....+ ...|.+...+.... .+..+.+.||-|.-.-.. .+..-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 3456679999999999999999998655433 44566666666655 566778899999432111 12234
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe----EEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV----ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+|.++-|.|++.|..- .........++..+.+..| ++=|=||+|..+.... .+ .. .-+.
T Consensus 255 VaeadlllHvvDiShP~ae-~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e----~E-------~n--~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAE-EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE----EE-------KN--LDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHH-HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc----cc-------cC--Cccc
Confidence 5678999999999999743 3333444555555444333 4556777776433111 11 11 1578
Q ss_pred ecCCCCCCHHHHHHHHHHHHh
Q 030120 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||++|.|++++.+.+-..+.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 999999999999998877654
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.21 E-value=6e-11 Score=78.72 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=40.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--cccccceeeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
....++++++|.||+|||||+|++.+...... .|.++.....+.. +..+.++||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 34568999999999999999999998876553 3333333333333 34689999998
No 328
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-11 Score=82.79 Aligned_cols=135 Identities=23% Similarity=0.337 Sum_probs=93.8
Q ss_pred ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhcc
Q 030120 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
..||+++....++.....++++|++|+..-+.-|.+++.+.-.++|++.++ +..+.+.....+.-++...
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 334566666666667788999999999998999999999888888777664 3345677778888888888
Q ss_pred ccCCCeEEEEEeCCCCCCCCCH----------------------HHHHHHhC-cccccCCceEEEEecCCCCCCHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGALDD----------------------AAVSEALE-LHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~~~~----------------------~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+..+.++|+++||-|+.++.-. +-+.++.. ..........-..+.|.+-+|+.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 8889999999999999654111 00011111 111111223345567888899999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 88877654
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.19 E-value=3.8e-10 Score=81.17 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------ccccccceeeEEEE--CC--EEEEEEECCCCCCCc---c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----------TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIR---P 76 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~---~ 76 (182)
.-.++|+++|+.|.|||||+|+|++..... ..+++.+....... ++ .++.++||||.-..- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 568999999999999999999999874322 12333333333333 33 567789999933221 1
Q ss_pred chh-----------hh--------------cCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 77 YWR-----------CY--------------FPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 77 ~~~-----------~~--------------~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.|. .| =.++|+++|++.++... +.... ..+..+. ..+.+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 111 11 13579999999987543 22222 2333332 35679999999999
Q ss_pred CCCCCHHHHHHH
Q 030120 131 PGALDDAAVSEA 142 (182)
Q Consensus 131 ~~~~~~~~~~~~ 142 (182)
....+...+.+.
T Consensus 175 lT~~El~~~K~~ 186 (373)
T COG5019 175 LTDDELAEFKER 186 (373)
T ss_pred CCHHHHHHHHHH
Confidence 765444444433
No 330
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.19 E-value=4.1e-11 Score=89.84 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=114.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccc-ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-.++|++|+|..++|||+|+.+++.+.+.....+.+ ...+.+.. ...-+.+.|.+|.. ...+...+|++|||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 367899999999999999999999999888444443 33333333 45566677777633 33467889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|.+.+..+++........+........+|.++++++.-.......-.....-.....+...+.+|++.+.+|.++...|+
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999999988877776665556788899998875432222211111222223345677899999999999999999
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+..++.
T Consensus 183 ~~~~k~i 189 (749)
T KOG0705|consen 183 EVAQKIV 189 (749)
T ss_pred HHHHHHH
Confidence 8887654
No 331
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.2e-11 Score=85.56 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=95.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEE-CCEEEEEEECCCC----------CCCccc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQ----------TSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~----------~~~~~~ 77 (182)
.++.++..++++.|.+|+|||||+|.++..+... ..++.+.....-.+ -+..+.++|.||. ..+...
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456788999999999999999999999877554 22233333322222 4678999999991 223334
Q ss_pred hhhhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH------HHHHHHhCccc-
Q 030120 78 WRCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD------AAVSEALELHK- 147 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------~~~~~~~~~~~- 147 (182)
...|+.+- -.+++++|++.+ ++.......+++.+ .++|..+|+||||....... ..+...+....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 44555433 344555666544 22222222333333 58999999999998543221 01111010000
Q ss_pred -ccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.-....+++.+|+.++.|+++|.-.|.+.
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 01123457789999999999887776653
No 332
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.2e-10 Score=89.22 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccc---------c-------c--ceeeEEEE-------CCEEEEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPT---------I-------G--FNVETVQY-------NNIKFQVWDL 68 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t---------~-------~--~~~~~~~~-------~~~~~~~~D~ 68 (182)
+....+|+++|+-.+|||+|+..|..+..+...+. + + +.....+. ...-+.+.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 35677999999999999999999976654331110 0 0 01111111 3456789999
Q ss_pred CCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 69 GGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
|||-.+-......++.+|++++++|+.++-.++..+ +++.....+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHH
Confidence 999999988888899999999999999886654443 233333357999999999996
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.14 E-value=2.8e-10 Score=74.70 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccc--ceeeEEEECCEEEEEEECCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+|||||+|++.+.......++.+ .....+.. ...+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 356889999999999999999999877655333222 22222222 34588999998
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=7.7e-10 Score=79.70 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEEC--------------------------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN-------------------------------- 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-------------------------------- 59 (182)
...=|+++|...+||||+++.|+...++. ..||++.-...+...
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 45568999999999999999999988776 445555333322110
Q ss_pred ---------CEEEEEEECCCCCCC-----------ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCC
Q 030120 60 ---------NIKFQVWDLGGQTSI-----------RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA 119 (182)
Q Consensus 60 ---------~~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (182)
-..+.++||||.-+. ......+..++|.|+++||+..-+--......+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 137899999994322 233456778999999999998665333444333333 22345
Q ss_pred eEEEEEeCCCCCCC
Q 030120 120 VALIFANKQDLPGA 133 (182)
Q Consensus 120 ~iivv~nK~D~~~~ 133 (182)
.+-+|+||+|..+.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67889999998654
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.12 E-value=2.5e-10 Score=74.85 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=62.8
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.+..+..+++|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+.. ....... .....+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~--~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKE---VLEKWKS--IKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHH---HHHHHHH--HHHhCCCc
Confidence 4456777888999999999987643221 112222222 368999999999985421 1111110 01123356
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+++.|++++++.+.+.++.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 8999999999999999999987754
No 336
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=3.3e-10 Score=76.66 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=64.0
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHh---Cccccc
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 149 (182)
+...+..+++++|++++|+|+.+.... |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 466778889999999999999876421 11111111 14689999999999964332 22222221 001111
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.....++++||++++|++++++.|.+.++
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999998764
No 337
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.6e-09 Score=78.46 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--------c--ccccceeeEEEE--CC--EEEEEEECCCCCCCcc---c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--------I--PTIGFNVETVQY--NN--IKFQVWDLGGQTSIRP---Y 77 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--------~--~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~---~ 77 (182)
.-.|+++++|+.|.|||||+|+|+...+... . .|..+....... ++ .++.++||||...... .
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3469999999999999999999987754331 1 133333333333 33 5667899999322110 1
Q ss_pred h-----------h-----------hhc--CCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 78 W-----------R-----------CYF--PNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------~-----------~~~--~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
| . ..+ .++|+++|++.+.... +.... ..+..+ . ....+|-|+.|+|...
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCC
Confidence 1 1 112 2679999999987542 12222 222222 2 3578999999999875
Q ss_pred CCC
Q 030120 133 ALD 135 (182)
Q Consensus 133 ~~~ 135 (182)
..+
T Consensus 173 ~~E 175 (366)
T KOG2655|consen 173 KDE 175 (366)
T ss_pred HHH
Confidence 533
No 338
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4e-11 Score=84.19 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceee-------------------E----------EE-
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVE-------------------T----------VQ- 57 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~-------------------~----------~~- 57 (182)
.+-.++|+-+|..-.||||++.++.+-.... ..-|+...+. . .+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4568899999999999999999987533111 0001100000 0 00
Q ss_pred ------E-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 58 ------Y-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 58 ------~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
+ --..+.++|+|||+-+-........-.|+.++++..+......+..+.+..+--- .=+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhh
Confidence 0 0136679999999866555444445568999999988665443443333322111 12468999999999
Q ss_pred CCCCCHHHHHHHhCc--ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 131 PGALDDAAVSEALEL--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
..+....+--+.+.. ......+.|++++||.-++|++.+.++|.++++...|
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 755332222222211 1112356789999999999999999999999886543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.07 E-value=5.4e-10 Score=72.00 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc--cccccceeeEEEECCEEEEEEECCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
+++++|.+|+|||||+|++.+...... .+..+.....+.... .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876542 222333334444433 6899999994
No 340
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=2.2e-09 Score=73.93 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--cc-ccccccceeeEEEECCEEEEEEECCCCC-------CCccchhhhcCCCCe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d~ 87 (182)
.++.++|-|.+||||++..+.+-.. ++ ..+|.........+++-++++.|.||.- ..........+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 4899999999999999999976542 22 2333334455666889999999999932 122333445577899
Q ss_pred EEEEEeCCCcccHHHHHH-----------------------------------------HHHHH----------------
Q 030120 88 VIYVVDSSDTDRIQTAKE-----------------------------------------EFHAI---------------- 110 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~-----------------------------------------~~~~~---------------- 110 (182)
+++|.|+..+-+-....+ .+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 999999976532211111 00000
Q ss_pred --HhccccC--CCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 111 --LEEEELK--GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 111 --~~~~~~~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+.....+ -+|++.++||+|-..- +++.- .......+++||-+++|++++++.+.+.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISi---EELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISI---EELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeee---eccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 0001112 3689999999996432 22111 122335899999999999999999887653
No 341
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.04 E-value=8.7e-10 Score=75.95 Aligned_cols=84 Identities=33% Similarity=0.549 Sum_probs=69.4
Q ss_pred cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhccccC
Q 030120 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.++....+.+...+++.+|++|+..-+.-|...+..+.++|||+..+.. .++......+..+....+..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 44566666777888999999999999999999999999999999987642 23566667777887777778
Q ss_pred CCeEEEEEeCCCCC
Q 030120 118 GAVALIFANKQDLP 131 (182)
Q Consensus 118 ~~~iivv~nK~D~~ 131 (182)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 89999999999984
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.02 E-value=9.2e-10 Score=80.08 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEECCEEEEEEECCCC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 71 (182)
+.++.+........+++++|-||+|||||||+|.++......+..+.+. ..+... ..+.++||||-
T Consensus 120 i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPGi 187 (322)
T COG1161 120 IKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPGI 187 (322)
T ss_pred HHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCCc
Confidence 3344444445667899999999999999999999998766444334433 333333 34899999994
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.02 E-value=2.3e-09 Score=70.31 Aligned_cols=91 Identities=20% Similarity=0.109 Sum_probs=58.8
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
..++.+|++++|+|+.++.. .....+...+... ..+.|+++|+||+|+.++.........+. ....+..+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~--~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMG--TRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCcc--ccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEee
Confidence 35688999999999998732 1222333333322 23589999999999964321112222222 11223368899
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~ 177 (182)
|+++.|++++++.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997754
No 344
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=3.2e-09 Score=77.95 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=61.3
Q ss_pred hhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 79 RCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. .......++.... ..+.|+++|+||+|+.+........+.+ ...++.+++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 44578999999999998765 3334455554442 2478999999999996432112222222 223457999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 030120 158 TCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~ 176 (182)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
No 345
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=6.7e-09 Score=70.82 Aligned_cols=131 Identities=16% Similarity=0.273 Sum_probs=76.2
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------cccccccee--eEEEECCE--EEEEEECCCC
Q 030120 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TIPTIGFNV--ETVQYNNI--KFQVWDLGGQ 71 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~--~~~~~~~~--~~~~~D~~g~ 71 (182)
.+.++.+| .|+|++||.+|.|||||+|.++...... ...|+.+.. +.+..+++ ++.++||||.
T Consensus 38 ~k~mk~GF---~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 38 KKTMKTGF---DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred HHHHhccC---ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 34566666 8999999999999999999997544322 111222221 22333444 5678999994
Q ss_pred CCC---ccchhh-----------hc--------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEE
Q 030120 72 TSI---RPYWRC-----------YF--------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123 (182)
Q Consensus 72 ~~~---~~~~~~-----------~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.+. ...|.. |+ .++|+++|++.++... +..+. .++++... .-+.++-
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplD---ieflkrLt-~vvNvvP 189 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLD---IEFLKRLT-EVVNVVP 189 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCccc---HHHHHHHh-hhheeee
Confidence 332 222321 11 2469999999987542 11111 22222211 2356899
Q ss_pred EEeCCCCCCCCCHHHHHHHhC
Q 030120 124 FANKQDLPGALDDAAVSEALE 144 (182)
Q Consensus 124 v~nK~D~~~~~~~~~~~~~~~ 144 (182)
|+.|+|...-++...+.+.+.
T Consensus 190 VIakaDtlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 190 VIAKADTLTLEERSAFKQRIR 210 (336)
T ss_pred eEeecccccHHHHHHHHHHHH
Confidence 999999865544444444443
No 346
>PRK00098 GTPase RsgA; Reviewed
Probab=98.97 E-value=4.8e-09 Score=75.72 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=58.4
Q ss_pred cCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..++|.+++|+|+.++...... ..|+..+ .. .++|+++|+||+|+.+. .......... ....+.+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEeC
Confidence 4889999999999887654444 3444433 22 47899999999999632 2222111111 1223467999999
Q ss_pred CCCCCHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSN 175 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~ 175 (182)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-08 Score=78.22 Aligned_cols=145 Identities=15% Similarity=0.231 Sum_probs=85.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccccee-------------------------------------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV------------------------------------- 53 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~------------------------------------- 53 (182)
..+...||++.|..++||||++|+++.++..+ ..+++....
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34778899999999999999999998666433 222221000
Q ss_pred -------eEEEEC-------CEEEEEEECCCCCC---CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcccc
Q 030120 54 -------ETVQYN-------NIKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 54 -------~~~~~~-------~~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
..+-+. ..++.++|.||... ...-.......+|++++|.++.+.-+ ...+.+ +.....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--~sek~F---f~~vs~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--LSEKQF---FHKVSE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--HHHHHH---HHHhhc
Confidence 001111 23778899999543 23334556788999999999987632 333222 222222
Q ss_pred CCCeEEEEEeCCCCCCCCC--HHHHHH---HhCcccccCCceEEEEecCCC
Q 030120 117 KGAVALIFANKQDLPGALD--DAAVSE---ALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+..+.++.||+|...... .+.+.. ++.........-.++++||+.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3566788888889854321 122222 222222233344588899654
No 348
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.2e-09 Score=83.44 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------------c---ccccccccceeeE--EEE--CCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------------V---VSTIPTIGFNVET--VQY--NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------------~---~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~ 74 (182)
..+.-+++++.+...|||||..+|+..+ | .++..+.+++.+. +.. ++..+.++|+|||-++
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3566789999999999999999996433 1 1122233333222 222 7789999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
........+-+|+.++++|+..+-- .....++++.+..+..+++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~-----~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVC-----SQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccc-----hhHHHHHHHHHHccCceEEEEehhhh
Confidence 9999888899999999999987632 12223344444457789999999993
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.95 E-value=3.2e-09 Score=75.92 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=40.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
...++++++|.||+|||||+|++.+..... ..|.++.....+... ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 456899999999999999999999877544 333333333334443 36899999996
No 350
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.95 E-value=3.4e-09 Score=76.18 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
...++++++|.||+|||||+|++.+..... ..|.++.....+.. +..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 466899999999999999999999987655 33333333333333 3468999999953
No 351
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.94 E-value=4.1e-09 Score=76.33 Aligned_cols=155 Identities=21% Similarity=0.234 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------------------cc-cccccccee-----------------eEEEE--
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV------------------VS-TIPTIGFNV-----------------ETVQY-- 58 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~------------------~~-~~~t~~~~~-----------------~~~~~-- 58 (182)
+++|+++|+..+|||||+-.|..... .+ ..+..+-+. ...+|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 56999999999999999987754331 11 111111100 11111
Q ss_pred ----CCEEEEEEECCCCCCCccchhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 ----NNIKFQVWDLGGQTSIRPYWRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...-+.++|.+|++.|.......+ +-.|..++++-++-+. .....+.+-..+ ...+|+++|++|+|.+.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL----aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL----ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh----hhcCcEEEEEEeeccCc
Confidence 234678999999999877654433 3468888888887552 111122221111 13689999999999987
Q ss_pred CCCHHHHHHHh----Ccc---------------------cccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 133 ALDDAAVSEAL----ELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 133 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
..-.++-...+ +.. +....-||+|.+|..+|.|++. +..+...+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNll 356 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhc
Confidence 64333332222 210 1112458899999999999874 44444433
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.93 E-value=3.8e-09 Score=70.31 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=41.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
.+..++++++|.+|+|||||+|++.+..+.. ..+.++.....+... ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3556799999999999999999999877644 233333333334443 56889999994
No 353
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=5e-09 Score=75.25 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+.++|.+++|+|+.++. ++.....|+..+.. .++|+++|+||+|+.+. .+...... .....+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~---~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EEEELELV---EALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HHHHHHHH---HHHhCCCeEEEEE
Confidence 478899999999999887 66776766665533 36899999999999654 11111111 1112446899999
Q ss_pred CCCCCCHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSN 175 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~ 175 (182)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999887753
No 354
>PRK12288 GTPase RsgA; Reviewed
Probab=98.92 E-value=8.8e-09 Score=75.60 Aligned_cols=88 Identities=24% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.++|.+++|+++....++.....|+.... ..++|.++|+||+|+.+......+....... ...+.+++++||++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y--~~~g~~v~~vSA~t 192 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY--RNIGYRVLMVSSHT 192 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHH--HhCCCeEEEEeCCC
Confidence 56899999999988878888887766442 2468999999999997542222222222211 22346899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
+.|++++++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999988753
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.91 E-value=2.7e-09 Score=72.26 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc----------ccccccccceeeEEEECCEEEEEEECCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEV----------VSTIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
+..+++++|.+|+|||||+|++.+... .+..|.++.....+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 457899999999999999999987542 113333333334444432 689999998
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.89 E-value=7.7e-09 Score=67.78 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEE-EECCEEEEEEECCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV-QYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+|||||+|++.++......++.+.+.... ...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 456789999999999999999999876554444444332211 11334789999998
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.89 E-value=1e-08 Score=67.16 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
.....+++++|.+|+|||||+|.+.+..... ..+.++.....+... ..+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCC
Confidence 3567899999999999999999999876432 223222223333332 5689999998
No 358
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.3e-08 Score=73.65 Aligned_cols=157 Identities=23% Similarity=0.257 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------c-----ccccccee--eEEEE-----------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-------------------T-----IPTIGFNV--ETVQY----------- 58 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------------------~-----~~t~~~~~--~~~~~----------- 58 (182)
-.++++++|...+|||||+-.|..+.... . ....+++. ..+.|
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35699999999999999998886443110 0 00111111 11112
Q ss_pred -CCEEEEEEECCCCCCCccchhhhcCC--CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 59 -NNIKFQVWDLGGQTSIRPYWRCYFPN--TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
...-+.++|.+|+..|.......+.. .|..++++++..+..- ..++.+--+ .. -++|..++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~-~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI-AA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH-HH---hCCCeEEEEEeeccccchh
Confidence 23567899999999998776555543 5899999999877431 122222222 22 3799999999999987633
Q ss_pred HHHHH----HHhC---------------------cccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 136 DAAVS----EALE---------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 136 ~~~~~----~~~~---------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.+... ..+. .........|+|.+|+.+|+|++- +..+...+.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Ls 387 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLS 387 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcC
Confidence 32222 1111 112234567899999999999874 444444443
No 359
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.87 E-value=1.8e-08 Score=73.94 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-cc---ccccccceeeEEEECC-----------------EEEEEEECCCCC----
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV-VS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
++++|+|.||+|||||+|.+.+... .. ...|...+...+.+.+ ..+.+.|.||.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999988765 33 3334556666665533 468999999943
Q ss_pred ---CCccchhhhcCCCCeEEEEEeCC
Q 030120 73 ---SIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23445566789999999999985
No 360
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.1e-08 Score=77.95 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-----c---c-------------cccccceeeEEEECCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-----S---T-------------IPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-----~---~-------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+.-+|++.-.-.+||||+-++.+...-. . . .-|+...-..+.+...++.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 46668999999999999999998632210 0 0 0011122234556789999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+-......++--|+.++++++..+- ..+....++++.+ .++|.+.++||.|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 9998899999999999999987662 1233344444433 3799999999999753
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.84 E-value=1.5e-08 Score=66.37 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=53.4
Q ss_pred CeEEEEEeCCCcccHHHHHHHHH-HHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFH-AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|++++|+|+.++.+.. ..++. ..... .++|+++|+||+|+.+. .++........ ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~-~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR-HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH-hhCCceEEEEeccCCc
Confidence 6899999998875432 22333 22222 46899999999999543 22222111111 1124568999999999
Q ss_pred CHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~v~~l~~~i~~~ 176 (182)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 362
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.84 E-value=8.2e-08 Score=72.87 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=64.5
Q ss_pred EEEEEEECCCC-------------CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 61 IKFQVWDLGGQ-------------TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.++.++|.||. +....+...++.+.++||+|+.-... +..+....++.....-.+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 58899999992 23345567899999999999965543 445555566666655567889999999
Q ss_pred CCCCCC--CCHHHHHHHhCcccccCCceEEEEe
Q 030120 128 QDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 128 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.|+.+. ..+..+...+.-..+......||-+
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 999654 3566777766544333333345544
No 363
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=7.9e-09 Score=76.49 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccccc
Q 030120 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (182)
.+.+......+...++++++|+|+.+... . |...+.... .+.|+++|+||+|+.+.. ...++...+... ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s---~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--S---LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--C---ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 34566777778889999999999976531 1 222222221 257899999999996542 233333322111 11
Q ss_pred CCc---eEEEEecCCCCCCHHHHHHHHHHH
Q 030120 150 NRQ---WAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 150 ~~~---~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 112 248999999999999999998764
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.79 E-value=2.9e-08 Score=70.91 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGG---- 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g---- 70 (182)
.+.++++|||-||+|||||+|.+....... ...|++.+...+... .-.+.++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 478899999999999999999998776544 344777777666552 24678999998
Q ss_pred ---CCCCccchhhhcCCCCeEEEEEeCC
Q 030120 71 ---QTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ---~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.+.+.....+-++.+|+++-|+++-
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2344555666778999999999875
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.79 E-value=1.1e-08 Score=73.27 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=61.2
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
......+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+.+........+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 345667889999999999987643221 2223332 25799999999998543111221112211 23468
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+.+||+++.|++++.+.+.+.+++
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHH
Confidence 999999999999999998877653
No 366
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.77 E-value=2.4e-07 Score=64.24 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----ccccccceeeEEEE---CCEEEEEEECCCCCCCcc------chh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRP------YWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~------~~~ 79 (182)
.+-.-|+|+|++++|||+|+|.+++. .+.. ...|.++-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567889999999999999999998 5543 12234433333333 357899999999654322 122
Q ss_pred hhcC--CCCeEEEEEeCCCcc
Q 030120 80 CYFP--NTEAVIYVVDSSDTD 98 (182)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~ 98 (182)
..+. -++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 2222 378999988886554
No 367
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.1e-08 Score=73.19 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+..+-++++|+||+|||||++++..+..-.....+.--...+.....++.+..+|. . ........+-+|.+++++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--H-HHHHHhHHHhhheeEEEecc
Confidence 46778899999999999999999876533311111111122223567899999993 2 22334455778999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc--ccCCceEEEEecCCC
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHK--IKNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~ 162 (182)
+=+- +-..-.+..++...+. ..++=|+|..|+.... ........++-.. .-..+..+|..|...
T Consensus 144 nfGf--EMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 144 NFGF--EMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ccCc--eehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 8663 2222223334444332 3467789999996542 2233333222111 122445577777544
No 368
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.8e-08 Score=72.49 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC-----------------------ccc-----------ccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGE-----------------------VVS-----------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~-----------------------~~~-----------~~~t~~~~~~~~~~ 58 (182)
++...+++.++|...+||||+-..+.... +.+ ...|++.....++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 35788999999999999999988875211 111 11244445555666
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...++.+.|.|||..+-........++|.-++|+++...+- | .+.+...... +.. .-...|+++||.|...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La-kt~--gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KTA--GVKHLIVLINKMDDPT 231 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH-Hhh--ccceEEEEEEeccCCc
Confidence 78899999999999998888888889999999999854321 1 1112111111 111 2357899999999864
Q ss_pred CCCHHHHHHHh--------C-cccccCCceEEEEecCCCCCCHHHHHH
Q 030120 133 ALDDAAVSEAL--------E-LHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 133 ~~~~~~~~~~~--------~-~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
.....+..++. . ..........++++|..+|.++++..+
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 33322222211 1 112233566799999999999887543
No 369
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=4.6e-08 Score=65.08 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=59.0
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
......++++|++++|+|+.++..... ..+.... .+.|+++|+||+|+.+........+.+. .....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence 344567789999999999987643211 1111111 2478999999999964311111111111 112458
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+.+||+++.|++++.+.+.+.++
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=3.7e-08 Score=63.43 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
...+..+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.++.......+.+ ...+..++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEE
Confidence 45678899999999998875432 222333333221 468999999999985432111111222 1223568999
Q ss_pred cCCCCCC
Q 030120 159 CAIKGEG 165 (182)
Q Consensus 159 Sa~~~~~ 165 (182)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998753
No 371
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.64 E-value=1.9e-07 Score=61.33 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998754
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=1.1e-07 Score=68.40 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCCCC-CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030120 68 LGGQT-SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||. .........+..+|++++|+|+..+.+.. ...+.+... +.|+++|+||+|+.+........+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 35543 22334556778999999999998764322 122333322 578999999999854311112211121
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
..+.+++.+||+++.|++++.+.+.+.++
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 11346899999999999999998887664
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=9.9e-08 Score=70.15 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.++++|.+|+|||||+|+|++..... ..+. ++....-+.... ...++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 37899999999999999999876432 1111 111222222321 23599999976654
No 374
>PRK12289 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.1e-07 Score=70.03 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
.++++|++|+|||||+|+|.+..... ..+. ++.....+.... ...++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCcccc
Confidence 37999999999999999999765332 1111 122223333322 2379999995443
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.9e-08 Score=72.89 Aligned_cols=120 Identities=23% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------ccc-------------ccccccceeeEEEECCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------VVS-------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+-.+|+|+..-.+||||...+++.-. +.. ..-|+...-..++|++.++.++||||+-.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 355689999999999999999986311 100 01122222344667899999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAV 139 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 139 (182)
+.-..+.+++--|+++.|||++-+-.-+... .| ++....++|-..++||.|.........+
T Consensus 115 f~leverclrvldgavav~dasagve~qtlt-vw----rqadk~~ip~~~finkmdk~~anfe~av 175 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLT-VW----RQADKFKIPAHCFINKMDKLAANFENAV 175 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceee-ee----hhccccCCchhhhhhhhhhhhhhhhhHH
Confidence 9999999999999999999998763222222 22 2333357999999999998755444333
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=2.3e-07 Score=65.26 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc-------cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP-------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|++.+..... ..+ -++.....+... ...++||||-..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--CcEEEeCCCccccC
Confidence 368899999999999999998765322 111 112222223332 24799999965443
No 377
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.54 E-value=9.6e-08 Score=71.72 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
.+.|++||-||+||||+||+|.|.+..+.+.|.+-+.+-.++ -...+.+.||||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 589999999999999999999999988866666644333222 335788999999
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.53 E-value=1.4e-07 Score=61.48 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccc------cccceeeEEEECCEEEEEEECCCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIP------TIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~------t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
-.++++|++|||||||+|.|.+..... ... .+......+... ....++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCcc
Confidence 578899999999999999999874221 111 111122223332 24688999995443
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=7.8e-07 Score=65.05 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=53.8
Q ss_pred CEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||+|........ ... ..+.|.+++|+|+..+.. .......+.... ..--+|+||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~----~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV----GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC----CCCEEEEeeecCCCC
Confidence 4679999999976432221 111 235789999999977632 222223332221 235789999998644
Q ss_pred CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
... -+..... .+.|+..++ +|++++++.
T Consensus 295 ~G~-~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGA-ALSIAYV------IGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccH-HHHHHHH------HCcCEEEEe--CCCChhhcc
Confidence 322 1111111 234566665 788887664
No 380
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=2.5e-07 Score=64.64 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----cccccceeeEEEE--CC--EEEEEEECCCCCC-------Ccc---
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQY--NN--IKFQVWDLGGQTS-------IRP--- 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~-------~~~--- 76 (182)
-.|+|+.+|..|.|||||+++|++-.+... .|+.......++. .+ .++.++||.|..+ +..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 378999999999999999999999887652 2222222222222 23 4667899998321 111
Q ss_pred ----chhhh-------------c--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 77 ----YWRCY-------------F--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 77 ----~~~~~-------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
....| + .+.|+++|.+.++.. ++........+-+. .++.+|-|+.|+|.....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 11111 1 357999999988754 23444333222222 357788899999976543
No 381
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.50 E-value=2.2e-07 Score=68.87 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=60.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------ccccccccceeeEEEECCEEEEEEECCCCCCCccch----h----hh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV-------VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----R----CY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~----~~ 81 (182)
..++.++|.+|+|||||+|++.+... .+..|.++.....+.. ...+.++||||-....... . ..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~ 232 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIINSHQMAHYLDKKDLKYI 232 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCChhHhhhhcCHHHHhhc
Confidence 36899999999999999999987532 1133333333333333 2346799999954322111 0 11
Q ss_pred --cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 82 --FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
-+......+.++..+.-.+..... +......+..+.++.++.+...
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeE
Confidence 133566677776654432222110 1111113456677777776543
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.49 E-value=2.9e-07 Score=68.34 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----c--ccccccccceeeEEEECCEEEEEEECCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-----V--VSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..++.++|.+|+|||||+|+|.+.. . .+..|.++.....+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 4589999999999999999998543 1 123343344444444432 3479999995
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=4.5e-07 Score=67.37 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCC-eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc--cCCceEEEEe
Q 030120 83 PNTE-AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 158 (182)
...+ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... ..++......... ......++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 4444 999999998753 12222222222 2578999999999965322 2233222211110 1111258999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 030120 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~ 177 (182)
||+++.|++++++.|.+..
T Consensus 140 SAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999997653
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.48 E-value=1.8e-06 Score=64.03 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=55.5
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|+++..+.........+.... . .+.+.++|+||+|+.+. ..+..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~-~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW-E---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH-H---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 477899999999975543333333333332 2 46777999999999754 21222222211 345679999999
Q ss_pred CCCCHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLS 174 (182)
Q Consensus 162 ~~~~v~~l~~~i~ 174 (182)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.47 E-value=8.1e-07 Score=64.66 Aligned_cols=139 Identities=21% Similarity=0.191 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccc--------------cccceeeEE-----------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------VV--STIP--------------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~--------------t~~~~~~~~----------------- 56 (182)
...-++++|++|+||||++..+.... +. ...+ ..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999885311 10 0000 000110000
Q ss_pred EECCEEEEEEECCCCCCCccc----hhhh--------cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 57 QYNNIKFQVWDLGGQTSIRPY----WRCY--------FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
...+.++.++||||....... .... -...+..++|+|++.+. +... ....+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 014578999999997543322 1111 23468899999999763 2333 22333222 1345799
Q ss_pred EeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 125 ANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+||.|...... .+..... ..+.|+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G--~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCcc--HHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 99999643321 1111211 1244566666 777776553
No 386
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.47 E-value=2.4e-06 Score=72.26 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=64.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccc-----ccccc-eeeEEEE-CCEEEEEEECCCCCC--------Cccchhhhc--
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGF-NVETVQY-NNIKFQVWDLGGQTS--------IRPYWRCYF-- 82 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~-~~~~~~~-~~~~~~~~D~~g~~~--------~~~~~~~~~-- 82 (182)
.+|+|++|+||||+++.- |-.++-.. .+.+. ....+++ -..+-.++||+|... ....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 579999999999999987 33332211 11111 0111222 224567999999332 122344333
Q ss_pred -------CCCCeEEEEEeCCCccc--H-------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 83 -------PNTEAVIYVVDSSDTDR--I-------QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 -------~~~d~ii~v~d~~~~~s--~-------~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+-.++||+++|+.+--. - ...+..+.++.... ....||.+++||+|+..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 34799999999974311 1 12233333443332 25799999999999874
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.44 E-value=2.7e-06 Score=64.00 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCcc--cccc--------------cccceeeEEE-----------------
Q 030120 17 EARILVLGLDNAGKTTILYRLQ------MGEVV--STIP--------------TIGFNVETVQ----------------- 57 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~------~~~~~--~~~~--------------t~~~~~~~~~----------------- 57 (182)
..-|+++|.+|+||||++..|. +..+. ...+ ..+.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999885 22211 0100 0111001000
Q ss_pred ECCEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 58 YNNIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
..+.++.++||||........ ..+ ...++-+++|+|+..++.-.... ..+... -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc----cCCcEEEEECccCC
Confidence 025789999999976543322 111 23568899999998764322222 222221 13568899999975
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
No 388
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.43 E-value=6.8e-07 Score=57.97 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=36.9
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+.++.++||+|.... ...++..+|.++++..+.-.+...-.. ..++ ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 578999999985422 234778899999998887332211111 1122 223489999997
No 389
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.41 E-value=1.7e-07 Score=68.48 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEECCEEEEEEECCCCCC--Cccchh
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGGQTS--IRPYWR 79 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~--~~~~~~ 79 (182)
++++|-+-.+..+.+.|+++|-||+||||+||+|-.++++...|-.+.+. ..+. --.++.++||||.-- ......
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt-LmkrIfLIDcPGvVyps~dset~ 372 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT-LMKRIFLIDCPGVVYPSSDSETD 372 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH-HHhceeEecCCCccCCCCCchHH
Confidence 45555555568899999999999999999999999999887544333111 1111 235788999999431 123333
Q ss_pred hhcCCCCeEEEEEeCCCcc
Q 030120 80 CYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~ 98 (182)
..+ .+++-|=.+.+++
T Consensus 373 ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 373 IVL---KGVVRVENVKNPE 388 (572)
T ss_pred HHh---hceeeeeecCCHH
Confidence 333 2556666666653
No 390
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=1.2e-05 Score=52.01 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE--CCEEEEEEECC-CC-----------CC-------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLG-GQ-----------TS------- 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~D~~-g~-----------~~------- 73 (182)
....+|.|.|+||+||||++..+...--..-..--++....+.- ...-|.++|+. |. ..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 34679999999999999999988532111101111122222222 12333444444 21 11
Q ss_pred ---Cc----cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030120 74 ---IR----PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 74 ---~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
+. ......++.+|++| +|=--+ ++-....+.+.+........|++.++.+.+..+ ..+++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~---- 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKL---- 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhc----
Confidence 11 11223445567665 444333 333333344444444445788999998876411 11222211
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
....+| .+.+|-+.+++.+...+..
T Consensus 153 ----~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 ----GGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ----CCEEEE----EccchhhHHHHHHHHHhcc
Confidence 122232 4555666888888877653
No 391
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.37 E-value=2.7e-07 Score=67.33 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=43.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce--eeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g 70 (182)
-...++++|+|-||+||||+||+|.....+...++.+.+ ...+. -+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 367899999999999999999999998887744444433 33332 356889999999
No 392
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.32 E-value=6.6e-06 Score=55.45 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=60.8
Q ss_pred CEEEEEEECCCCCCCccch---hh---hcCC---CCeEEEEEeCCCc-ccH---HHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 60 NIKFQVWDLGGQTSIRPYW---RC---YFPN---TEAVIYVVDSSDT-DRI---QTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~---~~---~~~~---~d~ii~v~d~~~~-~s~---~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
...+.++|+|||-+..... +. .++. --+++|++|..=- ++. ..+...+.++.. -..|.|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 4578899999976543221 11 1111 2356666665311 111 222222222222 3689999999
Q ss_pred CCCCCCCCCHHHHHHHhCc---------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 127 KQDLPGALDDAAVSEALEL---------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 127 K~D~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
|.|+.+....+++...+.- ......-..+++....+.++++.++..|...+
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9999766443333332210 00011224577777777777888777776654
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=3.7e-06 Score=62.25 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-------ccccc--cc---------------cceeeEE-----------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV-------VSTIP--TI---------------GFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~-------~~~~~--t~---------------~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|..... ..... +. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3456888999999999999999964311 00000 00 1111111 114
Q ss_pred CEEEEEEECCCCCCCccchh---hhc---CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCC----CeEEEEEeCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR---CYF---PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~---~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~~iivv~nK~D 129 (182)
+.++.++||+|......... ..+ ....-.++|++++... ....+.+..+......+. .+-=+|+||.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 67899999999765433221 112 2345568899998762 233333333322111011 12357789999
Q ss_pred CCCC
Q 030120 130 LPGA 133 (182)
Q Consensus 130 ~~~~ 133 (182)
-...
T Consensus 293 Et~~ 296 (374)
T PRK14722 293 EASN 296 (374)
T ss_pred cCCC
Confidence 7543
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.31 E-value=1.9e-06 Score=62.07 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc-------cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP-------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|.+.+..... ..+ .++.....+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 578999999999999999998865432 111 1112222233321 23689999986554
No 395
>PRK00098 GTPase RsgA; Reviewed
Probab=98.31 E-value=2.2e-06 Score=62.03 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
...++++|++|+|||||+|.+.+..... ..+. ++.....+.... ...++||||...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCcc
Confidence 3468999999999999999998765332 1110 112222222322 3478999996543
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=1.7e-06 Score=61.55 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cccc------ccceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPT------IGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t------~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..+++|.+|+|||||+|+|....... .+.. ++....-+... ..-.++||||...+.-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGGWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCCEEEeCCCCCccCc
Confidence 67889999999999999998643211 1111 11111122221 2346899999776653
No 397
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.25 E-value=3.7e-06 Score=60.02 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCEEEEEEECCCCCCCccchh-------hhc-----CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 59 NNIKFQVWDLGGQTSIRPYWR-------CYF-----PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.+.++.++||||......... ... ..+|.+++|+|++.+. +.. .....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 457899999999765433221 111 2379999999998652 222 2334443322 24588999
Q ss_pred CCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 127 KQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 127 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|.|....... -.+.... +.|+..++ +|++++++.
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 9998544222 1222111 24566665 677776553
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.15 E-value=4.7e-05 Score=50.70 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=40.3
Q ss_pred CEEEEEEECCCCCCCccchh----hh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR----CY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++|+||......... .+ ....+.+++|+|+.... ...+....+.+.. + ..-+|+||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 55789999999754322211 11 13489999999997553 2233444443322 2 35677899998543
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.15 E-value=1.1e-05 Score=54.79 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=38.7
Q ss_pred CEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||........ ..+ ....+-+++|.+++.... ... .+..+.... .+-=+|+||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~----~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF----GIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS----STCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc----cCceEEEEeecCCCC
Confidence 4689999999976543321 111 125688999999987743 222 223332221 122567999997543
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.14 E-value=9.5e-06 Score=60.07 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc-ceeeE---------------------------------EEECC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG-FNVET---------------------------------VQYNN 60 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~---------------------------------~~~~~ 60 (182)
+.-.+++|||.|+||||-+-.|...... .....++ +.... ..+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3678899999999999998888544331 1111111 00000 01146
Q ss_pred EEEEEEECCCCCCCccch----hhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYW----RCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~----~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.++.++||.|........ ..++. ...-+.+|++++.. .......+..+... ..--+|+||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC
Confidence 799999999977665442 22322 23455667777765 44555555555221 12367899999753
No 401
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=9.4e-06 Score=60.31 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=62.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccc--------------cccceeeEEE--------------EC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------VV--STIP--------------TIGFNVETVQ--------------YN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~--------------t~~~~~~~~~--------------~~ 59 (182)
+...|+++|++|+||||++..|...- +. ...+ ..++...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999995211 10 0000 0000000000 01
Q ss_pred CEEEEEEECCCCCCCccc----hhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||+|....... ....+ ...+.+++|+|++.. ..+....+..+.. . ..-=+|+||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-~----~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-C----CCCEEEEEcccCCCC
Confidence 368999999997543222 12222 235778899998654 2333444444322 1 234688999997653
No 402
>PRK13695 putative NTPase; Provisional
Probab=98.12 E-value=0.00014 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998653
No 403
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.08 E-value=3.4e-05 Score=56.34 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=37.2
Q ss_pred EEEEEEECCCCCCCccchhhhcC--------CCCeEEEEEeCCCcccHHHHHHHH-HHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQTAKEEF-HAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..+++|.|-..-......++. ..+.++.|+|+.+..........+ .++ .. .-++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh------CCEEEEeccccC
Confidence 45678888886554433333211 248899999997642211111111 112 11 238999999997
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
+.
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 53
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=1e-05 Score=62.26 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--------Cc--ccccc-c-------------ccceeeEE-----------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV--VSTIP-T-------------IGFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--------~~--~~~~~-t-------------~~~~~~~~-----------~~~ 59 (182)
...-.++++|+.|+||||++..|... .+ ....+ . .++..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999888532 11 01100 0 01111110 013
Q ss_pred CEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||+|......... .... ....++|++.... .......+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 57899999999654322211 1111 2356777777654 3344443333322 245679999999754
No 405
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.07 E-value=7.2e-06 Score=58.37 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc-----cc--ccccccceee-EEEE-CCEEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV-----VS--TIPTIGFNVE-TVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~-----~~--~~~t~~~~~~-~~~~-~~~~~~~~D~~g~ 71 (182)
...+.++.|+|-||+|||||+|++..... .. ..|..+.... .+.+ ....+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 35788999999999999999999854321 11 2233322222 2444 5567899999993
No 406
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.06 E-value=2.1e-05 Score=41.61 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=28.3
Q ss_pred CCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
-.++++|++|++.. .+.++....+.++... ..++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 35899999999854 5677777777776433 24899999999998
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.05 E-value=2.1e-06 Score=57.53 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=38.4
Q ss_pred CEEEEEEECCCCCCCccch-----hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW-----RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+..++.+.|...-.... ....-..+.++.|+|+.+-.........+...+... -++++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 3577888888854443331 001123589999999976432233333333333332 3999999998654
No 408
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.04 E-value=0.00021 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
...+-+++|||..+|||||+.+|-
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 567889999999999999999994
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=2.3e-05 Score=59.45 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=61.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC------Ccc--c---ccc-----------cccceeeEE---------------EE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG------EVV--S---TIP-----------TIGFNVETV---------------QY 58 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~---~~~-----------t~~~~~~~~---------------~~ 58 (182)
+...++++|.+|+||||++..+... .+. . ..+ ..+...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4567899999999999998888421 100 0 000 000000000 00
Q ss_pred CCEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...++.++||||........ ......+|.+++|+|+..+. ........+.... ...-+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 23488999999976653322 11234678999999998763 2222333322211 12367889999753
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=2.9e-05 Score=58.50 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc------c-c--ccccc---------------cceeeE-----------EEECC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEV------V-S--TIPTI---------------GFNVET-----------VQYNN 60 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~------~-~--~~~t~---------------~~~~~~-----------~~~~~ 60 (182)
..-.++++|+.|+||||++..|.+... . . ...+. ++.... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 455899999999999999998764311 0 0 00000 000000 01145
Q ss_pred EEEEEEECCCCCCCccc----hhhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPY----WRCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++.++||+|....... ...+ .....-.++|+|++.. .+...+.+..+ .. -..-=+|+||.|-...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f-~~----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY-QG----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh-cC----CCCCEEEEEeeeCCCC
Confidence 68899999996543221 1222 1234567889999865 33444433333 11 1234678999997543
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.97 E-value=0.0002 Score=52.35 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=53.0
Q ss_pred EEEEEEECCCCCCCccchhhhc--------CCCCeEEEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..++.|.|-..-......+. -..|.++-|+|+.+-..... ....+.+-+.. .-++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 4566777777443322222211 23488999999986533222 22222222222 239999999998
Q ss_pred CCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+... +...........+..+++.+|. .+....+++
T Consensus 159 ~~~~---l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE---LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH---HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7643 3333333333455667888776 333443333
No 412
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=7e-05 Score=62.74 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-----ccccccceeeEEEE-CCEEEEEEECCCCCCC--------ccchhhh----
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI--------RPYWRCY---- 81 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~--------~~~~~~~---- 81 (182)
-+|+|++|+||||++..- +..|+- .....+......++ -..+-.++||+|.... ...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 478999999999998754 333322 11111111122222 3456788999994322 2334432
Q ss_pred -----cCCCCeEEEEEeCCCccc----H-----HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 82 -----FPNTEAVIYVVDSSDTDR----I-----QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 82 -----~~~~d~ii~v~d~~~~~s----~-----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+-.++||+.+|+.+--+ . ..++.-+.++. ....-..|+++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~-~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELR-ETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhhccCCceEEEEecccccc
Confidence 244699999999964211 1 11222233332 23335789999999999975
No 413
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.97 E-value=9e-05 Score=44.05 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccc-hhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+++.|.+|+|||++...+...-... +.....+ + ++.++|+++....... .......+|.++++++.....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g~~v~~~--~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-----GKRVLLI--D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEE--C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 5788999999999998885442111 1111111 1 8899999986543321 144556789999999887553
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
....................+..+++|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 222222222222222223455555554
No 414
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.96 E-value=4.9e-05 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++.+.|++|+|||||++.++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=2.9e-05 Score=57.47 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------c--ccccc--------------cccceeeEE-E-------------EC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------V--VSTIP--------------TIGFNVETV-Q-------------YN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~--~~~~~--------------t~~~~~~~~-~-------------~~ 59 (182)
..-.++++|+.|+||||++..+.... + ....+ ..++..... + ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45568899999999999999885311 0 00000 001100000 0 02
Q ss_pred CEEEEEEECCCCCCCccch----hhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||........ ..+. ...+.+++|.+++.. ..+....+..+ .. -.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f-~~----l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL-AE----IPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc-Cc----CCCCEEEEEcccCCCC
Confidence 4689999999975443322 2222 234676777776543 33333332222 11 1234788999997543
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=4.9e-05 Score=57.71 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCEEEEEEECCCCCCCcc----chhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRP----YWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
...++.++||||...... ....++. ...-+.+|++++.. .......+..+. .. . +--+|+||.|-.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~---~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL---P-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC---C-CCEEEEeccccc
Confidence 357899999999765431 2223333 33467788888755 234443333331 11 1 236889999975
Q ss_pred C
Q 030120 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 4
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.90 E-value=0.00011 Score=52.60 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=57.4
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
-..+.|-.++++.+.+|+--......+.-+... .++..++|+||+|+.+...... .+.. ......+.+++.+|+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~ 149 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSA 149 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecC
Confidence 345577888888888775322222222222222 4677788899999987644432 1111 122346778999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNT 176 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~ 176 (182)
+++.+++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999998887643
No 418
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=2.9e-05 Score=56.97 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------------ccc-cc------ccc-c-ceeeE----------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-TI------PTI-G-FNVET---------------- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------------~~~-~~------~t~-~-~~~~~---------------- 55 (182)
.+.--|+++|-.|+||||.+-.+.... |.. .. .+. . +.+..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 345567899999999999988884211 111 00 000 0 11111
Q ss_pred EEECCEEEEEEECCCCCCCccc-hhh-----hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 56 VQYNNIKFQVWDLGGQTSIRPY-WRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~-~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+.-++.++.|+||.|....... ... -.-+.|-+|+|.|++-++.-......+.+.... --+|+||.|
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKlD 251 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKLD 251 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEecc
Confidence 1115789999999996654332 211 123579999999999886554444444443322 135566666
Q ss_pred C
Q 030120 130 L 130 (182)
Q Consensus 130 ~ 130 (182)
.
T Consensus 252 G 252 (483)
T KOG0780|consen 252 G 252 (483)
T ss_pred c
Confidence 5
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.89 E-value=3.8e-05 Score=52.76 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=38.2
Q ss_pred EEEEEEECC-CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLG-GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
..+.++||- |.+ ..-+...+.+|.+|.|+|++-. ++.. .+.+.++....+ =.++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHHhC--CceEEEEEeeccch
Confidence 355555553 222 2224456789999999999854 2222 223344433322 27899999999954
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=4.7e-05 Score=58.35 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++++|+.|+||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34688999999999999999864
No 421
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.86 E-value=0.00014 Score=53.71 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999754
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.85 E-value=0.00042 Score=44.26 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=25.6
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+...........+++.|++|+|||++++.+...-
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3333333455679999999999999999997654
No 423
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.82 E-value=6.4e-05 Score=56.12 Aligned_cols=110 Identities=22% Similarity=0.233 Sum_probs=65.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc------CCc--cc---ccc-----------cccceeeE-----------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM------GEV--VS---TIP-----------TIGFNVET----------------- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~------~~~--~~---~~~-----------t~~~~~~~----------------- 55 (182)
.....|+++|-.|+||||.+-.|.. .++ .. +.| .+++....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999877741 110 00 111 11100000
Q ss_pred EEECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 56 VQYNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
......++.++||+|........- .-.-+.|=+++|+|+.-++.-....+.+.+.+.. -=+|+||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence 001356999999999776654331 2235689999999999885544444444444322 145677777
Q ss_pred CC
Q 030120 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 54
No 424
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=8.5e-05 Score=55.59 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC----------Ccc--cccc--------------cccceeeEE-----------EEC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG----------EVV--STIP--------------TIGFNVETV-----------QYN 59 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~----------~~~--~~~~--------------t~~~~~~~~-----------~~~ 59 (182)
...++++|++|+||||.+..+... .+. ...+ ..++..... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999888531 100 0000 001111100 114
Q ss_pred CEEEEEEECCCCCCCccc----hhhhcCC---CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||+|....... ....+.. ..-.++|+|++.. .....+.+..+... .+-=+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 679999999996543321 1222222 2358899999877 34444444444211 23468899999754
Q ss_pred C
Q 030120 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
No 425
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.82 E-value=2.8e-05 Score=53.37 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=38.8
Q ss_pred CEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCC------cccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 60 NIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSD------TDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.....++|+|||-++-... -..+++.+.-++++.+.+ +..+-... +.. +........|-+=|++|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~l--L~s-l~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSL--LVS-LATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHH--HHH-HHHHHhhcccchhhhhH
Confidence 4578899999976543221 223444566666665543 32222221 111 11111235788999999
Q ss_pred CCCCCC
Q 030120 128 QDLPGA 133 (182)
Q Consensus 128 ~D~~~~ 133 (182)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998543
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=9.6e-05 Score=55.57 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------c--ccccc--------------cccceeeEE----------EECCEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-------V--VSTIP--------------TIGFNVETV----------QYNNIKF 63 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-------~--~~~~~--------------t~~~~~~~~----------~~~~~~~ 63 (182)
...++++|++|+||||++..|.... + ....+ ..+...... ...+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999886321 0 00000 001111110 0036788
Q ss_pred EEEECCCCCCCcc----chhhhcC-----CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 64 QVWDLGGQTSIRP----YWRCYFP-----NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 64 ~~~D~~g~~~~~~----~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++||||...... .+..++. ...-.++|+|++... .........+ ... .+-=+|+||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCCC
Confidence 9999999653221 1122221 234688899998773 3333333333 221 234688999997543
No 427
>PRK10867 signal recognition particle protein; Provisional
Probab=97.80 E-value=8.1e-05 Score=56.46 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred CEEEEEEECCCCCCCccchh----h--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR----C--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||||........- . ..-..+.+++|+|+..+ +........+.... ...-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 46899999999654422211 1 11256788999998754 33333334443221 12356789999643
No 428
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.79 E-value=0.00016 Score=54.81 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=39.1
Q ss_pred CEEEEEEECCCCCCCccchhh------hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRC------YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
+.++.++||||.......... ..-..+.+++|+|+..+ +........+.... ...-+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 467999999996544322111 12357889999999765 33333444443221 1236779999964
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.78 E-value=2.5e-05 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=7.3e-05 Score=60.13 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---------ccccc---------------cceeeEE-----------EECCE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---------TIPTI---------------GFNVETV-----------QYNNI 61 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~---------------~~~~~~~-----------~~~~~ 61 (182)
.--++++|+.|+||||.+..+.+..... ...+. +...... ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3467899999999999999886432100 00000 0000000 11356
Q ss_pred EEEEEECCCCCCCccc----hhhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPY----WRCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++.++||+|....... .... ....+-+++|+|++.. .+...+....+..... -.+-=+|+||.|-...
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~--~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG--EDVDGCIITKLDEATH 338 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc--CCCCEEEEeccCCCCC
Confidence 8999999995433221 1111 2345678899999854 2233323233321100 0123678999997543
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.0001 Score=52.55 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC----c-cc---ccc--------------cccceeeEE--------------EEC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE----V-VS---TIP--------------TIGFNVETV--------------QYN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~----~-~~---~~~--------------t~~~~~~~~--------------~~~ 59 (182)
+.-+++++|++|+||||++..+.... . .. ..+ ..++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34699999999999999988775321 0 00 000 011111000 002
Q ss_pred CEEEEEEECCCCCCCccc----hhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||....... +...+ ...+-+++|+|++.. .++....+..+.. -.+-=+|+||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 568999999997643222 22222 245678999998754 2344444444422 1334788999997654
No 432
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.73 E-value=3.5e-05 Score=51.27 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|++++|+|+..+.+.. ...+.+... ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 7899999998863321 122222211 11135899999999999654
No 433
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.73 E-value=0.00021 Score=43.57 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=53.9
Q ss_pred EEEc-CCCCCHHHHHHHHhcCCcccccccccceeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC
Q 030120 21 LVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 21 ~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+++| ..|+||||+.-.+...-.... +....-++. ...++.++|+|+.... .....+..+|.++++.+.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh
Confidence 4444 478999998777642211100 000000000 1128999999986533 34456788899999998764
Q ss_pred cccHHHHHHHHHHHHhccccC-CCeEEEEEeC
Q 030120 97 TDRIQTAKEEFHAILEEEELK-GAVALIFANK 127 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~-~~~iivv~nK 127 (182)
. +..........+. ....+ ...+.+|+|+
T Consensus 77 ~-s~~~~~~~~~~l~-~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLR-VLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHH-HcCCCCcCceEEEecC
Confidence 4 3444444443332 22222 3467777775
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.70 E-value=3.7e-05 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|++|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.69 E-value=3.9e-05 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998644
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.5e-05 Score=51.48 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.67 E-value=5.6e-05 Score=41.02 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999885
No 438
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00011 Score=55.88 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc---ccccccceeeE--E------------------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS---TIPTIGFNVET--V------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------------~~~---~~~t~~~~~~~--~------------------~~~ 59 (182)
.+..++.++.....|||||..+|..+. |.. +....++.... + +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 445578899999999999999996432 111 11111111111 1 113
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
+.-+.++|.|||-.+.+..-..++-.|+.++|+|-.++--.+. ...+.+.+. .++.-++++||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhH
Confidence 5678899999999999988889999999999999987633222 222333333 34555889999996
No 439
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00026 Score=51.25 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------------ccc-----------------ccccccceeeEEEE-----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-----------------TIPTIGFNVETVQY----- 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------------~~~-----------------~~~t~~~~~~~~~~----- 58 (182)
.+.+-++++|-.|+||||-+-.|.... |.. .....+.+...+-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999988885211 100 00001111111111
Q ss_pred ---CCEEEEEEECCCCCCCccch-------hhhcCC-----CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEE
Q 030120 59 ---NNIKFQVWDLGGQTSIRPYW-------RCYFPN-----TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~-------~~~~~~-----~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.+.++.++||+|.-...... ....+. .|-+++++|++.++.--...+.+.+.... --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 57899999999954332221 112222 34588899999885444444455555432 257
Q ss_pred EEeCCCCCC
Q 030120 124 FANKQDLPG 132 (182)
Q Consensus 124 v~nK~D~~~ 132 (182)
|+||.|...
T Consensus 290 IlTKlDgtA 298 (340)
T COG0552 290 ILTKLDGTA 298 (340)
T ss_pred EEEecccCC
Confidence 899999643
No 440
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=5e-05 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++|||||||++-+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997644
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=0.00016 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-++|+|.+|+|||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35789999999999999999765
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.60 E-value=4e-05 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999755
No 443
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.57 E-value=6.8e-05 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+++|+||+||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 444
>PHA00729 NTP-binding motif containing protein
Probab=97.57 E-value=0.00014 Score=50.20 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.+++........-.+++|.|+||+|||+|..++...
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554455569999999999999999998654
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.57 E-value=8.2e-05 Score=41.63 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.56 E-value=7.8e-05 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3468999999999999999998775
No 447
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.53 E-value=0.00074 Score=48.55 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=63.5
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCC------------
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI------------ 74 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------------ 74 (182)
.++..-...+--+++++|++|-|||+++++|.........+.. ...++..+.+|.....
T Consensus 51 ~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~---------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 51 ELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA---------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC---------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3444444455578999999999999999999876643322111 1236666666652221
Q ss_pred ------------ccchhhhcCCCCeEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 75 ------------RPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 75 ------------~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.......++....=++++|=-.. .+.......+..+......-++|+|.|+++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11123455667777888875321 1222223222222112222478999998764
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.53 E-value=8.3e-05 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.=-++|+|++|+|||||+|-+.+-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 336899999999999999988654
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=8.6e-05 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++|+|++|+|||||++.+.+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44468999999999999999997654
No 450
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.51 E-value=0.00053 Score=41.54 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=46.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 20 ILVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 20 v~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+++.| ..|+||||+...+...-.....+ ...++. ...++.++|+|+..... ....+..+|.++++++.+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~-----vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR-----VLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc-----EEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 56667 46999999987774322111000 001111 11678999999865332 33667789999999988643
Q ss_pred ccHHHHHHH
Q 030120 98 DRIQTAKEE 106 (182)
Q Consensus 98 ~s~~~~~~~ 106 (182)
+.......
T Consensus 75 -s~~~~~~~ 82 (104)
T cd02042 75 -DLDGLEKL 82 (104)
T ss_pred -HHHHHHHH
Confidence 34444433
No 451
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.50 E-value=0.00011 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++..-++|+|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999999975
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.49 E-value=0.00016 Score=46.34 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00012 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
.-+++++|.+|+|||||+|.+.+...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 34789999999999999999987543
No 454
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.47 E-value=9.2e-05 Score=48.58 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+.++|.+|+|||||++++...- ...+.....+.+....+.+ |++|.+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~D 50 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKD 50 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccch
Confidence 47899999999999999997531 2223334444444333333 666643
No 455
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.46 E-value=0.00072 Score=43.37 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=57.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCc------c--cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 22 VLGLDNAGKTTILYRLQMGEV------V--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~------~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.-|.+|+|||++.-.+...-. . ...++.. . -..++.++|+|+.. .......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-~------~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-N------LDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-C------CCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 456789999998766632210 0 0111100 0 01788999999753 3344567888999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.+.. +.......+..+.... ...++.+|+|+++.
T Consensus 76 ~~~~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEPT-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CChh-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 8743 2333333333332221 34578899999974
No 456
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00013 Score=46.04 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999765
No 457
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.45 E-value=0.0002 Score=51.54 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=24.4
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.++........+-|+|.|++|||||||++.+.
T Consensus 52 ~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 52 QFLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34444334567889999999999999998763
No 458
>PRK05439 pantothenate kinase; Provisional
Probab=97.44 E-value=0.00022 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=27.8
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.++........+-|+|.|++|+||||+.+.+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455545567888999999999999999998854
No 459
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.44 E-value=0.00015 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999754
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.44 E-value=0.00023 Score=48.06 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=25.3
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
++.... +..-.++++|++|+|||||++.+++..
T Consensus 17 ~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 17 YLWLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344333 345689999999999999999997653
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00019 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+..-++|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566789999999999999999754
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00017 Score=45.70 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999976543
No 463
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00012 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=+++.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4457899999999999999998776
No 464
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.42 E-value=0.0026 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=+++.||+|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999997543
No 465
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0045 Score=47.15 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=81.8
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHh----cCCccc----ccc----------------------cccc------
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQ----MGEVVS----TIP----------------------TIGF------ 51 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~----~~~~~~----~~~----------------------t~~~------ 51 (182)
..+....++.+-|+++|-.|+||||=+-.+. ..++.- ..+ .++.
T Consensus 369 I~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYg 448 (587)
T KOG0781|consen 369 IMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYG 448 (587)
T ss_pred HHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcC
Confidence 3444455788999999999999999877764 111110 000 0000
Q ss_pred ------eeeEE---EECCEEEEEEECCCCCCCccch----hh--hcCCCCeEEEEEeCCCc-ccHHHHHHHHHHHHhccc
Q 030120 52 ------NVETV---QYNNIKFQVWDLGGQTSIRPYW----RC--YFPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 52 ------~~~~~---~~~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~ 115 (182)
...-+ ..++.++.++||+|...-.... .. -....|.|++|-.+--+ ++..... .+.+.+....
T Consensus 449 kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~-~fn~al~~~~ 527 (587)
T KOG0781|consen 449 KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLK-KFNRALADHS 527 (587)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHH-HHHHHHhcCC
Confidence 00001 1157899999999954332221 11 23568999999887544 3444443 3444444444
Q ss_pred cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 116 LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 116 ~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++.---++++|+|..++ .+-..+........ |++++
T Consensus 528 ~~r~id~~~ltk~dtv~d----~vg~~~~m~y~~~~--pi~fv 564 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTVDD----KVGAAVSMVYITGK--PILFV 564 (587)
T ss_pred CccccceEEEEeccchhh----HHHHHhhheeecCC--ceEEE
Confidence 445556789999997543 45555554443333 44443
No 466
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00017 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=++++|++|+|||||++.|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3448899999999999999998754
No 467
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.41 E-value=0.00014 Score=45.65 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.41 E-value=0.00016 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.40 E-value=0.00016 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+..=.++|+|++|+|||||+|-+.+=
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhc
Confidence 34457899999999999999988653
No 470
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.38 E-value=0.00029 Score=49.16 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+.+-++|.|++|+|||||++.+.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999999998754
No 471
>PRK06217 hypothetical protein; Validated
Probab=97.36 E-value=0.00018 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|.+|+|||||...|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 472
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00016 Score=46.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5667999999999999999999963
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.36 E-value=0.00016 Score=50.51 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-+..++++|+|++|+|||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999888754
No 474
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.35 E-value=0.00025 Score=47.56 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=17.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567789999999999999998853
No 475
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.35 E-value=0.00021 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998864
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.34 E-value=0.00017 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|++|+|||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999654
No 477
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00019 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999976
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.34 E-value=0.00021 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999996653
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.34 E-value=0.00021 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030120 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3457999999999999999985
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.34 E-value=0.00019 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 481
>PRK14530 adenylate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=49.37 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+|+|+|+||+||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 482
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.32 E-value=0.0002 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++|+|+.|+|||||++.+.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44578999999999999999975
No 483
>PRK08233 hypothetical protein; Provisional
Probab=97.31 E-value=0.00024 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-|+|.|.+|+|||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999754
No 484
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.31 E-value=0.00028 Score=52.13 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=44.4
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAIL-EEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 145 (182)
.......+..+|+||.|.|+.+|.+- -...+.+.. ... .++..|+|+||+|+.+.+..++...++..
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgt--R~~~vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGT--RCPEVEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCC--CChhHHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 33445566789999999999998542 222222332 222 24789999999999877666666666653
No 485
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.31 E-value=0.0003 Score=51.94 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
....+++|.|++|+|||||++++++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 567889999999999999999998653
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00023 Score=46.70 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
+|+|.|.||+||||+++.|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999996
No 487
>PRK03839 putative kinase; Provisional
Probab=97.29 E-value=0.00026 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+++|.||+||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 488
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00026 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
. .++++|+.|+|||||++.+.+-.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 89999999999999999998753
No 489
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.29 E-value=0.00025 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+..-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345578999999999999999998764
No 490
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.28 E-value=0.00021 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.27 E-value=0.00028 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998764
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.27 E-value=0.00032 Score=45.95 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=31.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
+.|+|..|+|||||+.++...- ...+.....+...... --+|++|.+.++
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L-----~~~G~rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKL-----KARGYRVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHH-----HhCCcEEEEEEecCCC-CCCCCCCCccch
Confidence 6799999999999999996432 1222333444443222 236777766554
No 493
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.00029 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.26 E-value=0.00028 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|++|+|||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.25 E-value=0.0003 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00027 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++||+|||||||++.+.|=.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37889999999999999997643
No 497
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.25 E-value=0.00031 Score=48.32 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999998764
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.24 E-value=0.00031 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.185 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44478999999999999999998754
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.24 E-value=0.00029 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999998754
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00031 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
Done!