BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030121
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2
SV=1
Length = 360
Score = 250 bits (638), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 117/170 (68%), Positives = 135/170 (79%), Gaps = 1/170 (0%)
Query: 1 MASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSV 60
MA KIYHERQ+LQFCLLH LNNLFQ + AFT+ SLN IAEKL + PNK+TWTPLS
Sbjct: 1 MADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSF 60
Query: 61 VFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
V KPHHN +TGNYD+NV+I ALEG+GKSVVWHD+R AS+IDLD + LMGIV+NVPV
Sbjct: 61 VLKPHHNTITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADT-LMGIVLNVPVK 119
Query: 121 RYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGL 170
RY GLW+SRHWV +RKI+GVWYNLDSD PQ F+D EVR FLD + L
Sbjct: 120 RYGGLWRSRHWVVVRKINGVWYNLDSDLVVPQLFRDDDEVRGFLDQNLSL 169
>sp|Q8TAC2|JOS2_HUMAN Josephin-2 OS=Homo sapiens GN=JOSD2 PE=1 SV=1
Length = 188
Score = 130 bits (326), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 22/176 (12%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
+YHERQ+L+ C +H+LNN+ QQ+ F++ + +EI ++L D PH +
Sbjct: 14 VYHERQRLELCAVHALNNVLQQQ-LFSQEAADEICKRLAPDS-----------RLNPHRS 61
Query: 68 AL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
L TGNYD+NV++AAL+G G + VW DRR S + L ++G+++N+P GL
Sbjct: 62 LLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGLL 117
Query: 127 ----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
+ RHWVALR++DGV+YNLDS AP+ D VR FL + G EVLLV
Sbjct: 118 SLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQGLCEVLLV 173
>sp|Q9CR30|JOS2_MOUSE Josephin-2 OS=Mus musculus GN=Josd2 PE=2 SV=1
Length = 188
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 22/177 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+YHERQ+L+ C +H+LNN+ Q++ F++ + +EI ++L D PH
Sbjct: 13 SVYHERQRLELCAVHALNNVLQEQ-LFSQEAADEICKRLAPDS-----------RLNPHR 60
Query: 67 NAL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGL 125
+ L TGNYD+NV++AAL+G G + VW DRR S + L ++G+++N+P GL
Sbjct: 61 SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQ----VLGLILNLPSPVSLGL 116
Query: 126 W----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLG-GEVLLV 177
+ RHWVALR++DG++YNLDS AP+ D VR FL + G EVLLV
Sbjct: 117 LSLPLRRRHWVALRQVDGIYYNLDSKLRAPEALGDEDGVRTFLAAALAQGLCEVLLV 173
>sp|Q5BJY4|JOS1_RAT Josephin-1 OS=Rattus norvegicus GN=Josd1 PE=2 SV=1
Length = 202
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 102/178 (57%), Gaps = 22/178 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+IYHE+Q+ + C LH+LNN+FQ AFTR +L EI ++L PN V PH
Sbjct: 25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TVVTPHK 73
Query: 67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
++ GNYD+NV++AAL+ +G VW D+R + I L +MG ++N+P + G
Sbjct: 74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALAN----VMGFIMNLPSSLCWG 129
Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDY-IIGLGGEVLLV 177
K +HW+ +R++ G +YNLDS P+ E+R+FL Y + G E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLV 187
>sp|Q9DBJ6|JOS1_MOUSE Josephin-1 OS=Mus musculus GN=Josd1 PE=2 SV=1
Length = 202
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+IYHE+Q+ + C LH+LNN+FQ AFTR +L EI ++L PN + PH
Sbjct: 25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLS---PN--------TMVTPHK 73
Query: 67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
++ GNYD+NV++AAL+ +G VW D+R + I L +MG ++N+P + G
Sbjct: 74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129
Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDY-IIGLGGEVLLV 177
K +HW+ +R++ G +YNLDS P+ E+R+FL Y + G E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKYHLRGKNCELLLV 187
>sp|Q5EAE5|JOS1_BOVIN Josephin-1 OS=Bos taurus GN=JOSD1 PE=2 SV=1
Length = 202
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 22/178 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+IYHE+Q+ + C LH+LNN+FQ AFTR +L EI ++L PN + PH
Sbjct: 25 QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRL---SPN--------TMVTPHK 73
Query: 67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
++ GNYD+NV++AAL+ +G VW D+R + AI L +MG ++N+P + G
Sbjct: 74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGAIALTN----VMGFIMNLPSSLCWG 129
Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
K +HW+ +R++ G +YNLDS P+ E+R+FL ++ G E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGKSELRKFLKHHLRGKNCELLLV 187
>sp|Q5R739|JOS1_PONAB Josephin-1 OS=Pongo abelii GN=JOSD1 PE=2 SV=1
Length = 202
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+IYHE+Q+ + C LH+LNN+FQ AFTR +L EI ++L PN + PH
Sbjct: 25 QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRL---SPN--------TMVTPHK 73
Query: 67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
++ GNYD+NV++AAL+ +G VW D+R + I L +MG ++N+P + G
Sbjct: 74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129
Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
K +HW+ +R++ G +YNLDS P+ E+R+FL ++ G E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLV 187
>sp|Q15040|JOS1_HUMAN Josephin-1 OS=Homo sapiens GN=JOSD1 PE=1 SV=1
Length = 202
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 22/178 (12%)
Query: 7 KIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHH 66
+IYHE+Q+ + C LH+LNN+FQ AFTR +L EI ++L PN + PH
Sbjct: 25 QIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIFQRL---SPN--------TMVTPHK 73
Query: 67 NAL--TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAG 124
++ GNYD+NV++AAL+ +G VW D+R + I L +MG ++N+P + G
Sbjct: 74 KSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTN----VMGFIMNLPSSLCWG 129
Query: 125 ----LWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLD-YIIGLGGEVLLV 177
K +HW+ +R++ G +YNLDS P+ E+R+FL ++ G E+LLV
Sbjct: 130 PLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGKNCELLLV 187
>sp|Q9W422|JOSL_DROME Josephin-like protein OS=Drosophila melanogaster GN=CG3781 PE=2
SV=3
Length = 221
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 21/180 (11%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
IYHERQ C LH+LNNLFQ F+++ L++ L + W PH +
Sbjct: 39 IYHERQTRHLCGLHALNNLFQGPDMFSKSELDDYCTTLT-----PRNW------LNPHRS 87
Query: 68 ALT-GNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
+ GNYD+NV++ AL+ R VW DRR + ++L + + G ++NVP G +
Sbjct: 88 WIGWGNYDVNVIMYALQQRNCEAVWFDRRRDPHCLNL----SVIFGFILNVPAQMSLGYY 143
Query: 127 -----KSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181
RHW+ALR+++G +YNLDS P+C ++ EFL + + E+ LV +++
Sbjct: 144 IPLPFHMRHWLALRRLNGSYYNLDSKLREPKCLGTEQQFLEFLATQLQMDHELFLVLDEE 203
>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1
Length = 280
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 45/192 (23%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAF--------TRASLNEIAEKLVLDYPNKQTWTPLS 59
+YHE Q+ C +H +N + Q G F A L+ +++L+ + P
Sbjct: 10 LYHEVQESNLCAVHCVNTVLQ--GPFFSEFDLAAVAADLDGKERQVMLEGAAVGGFAPGD 67
Query: 60 VVFKPHHN-ALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
+ + HN +L G++ I VL ALE VW L I +N P
Sbjct: 68 FLAEESHNVSLGGDFSIQVLQKALE------VWD-----------------LQVIPLNCP 104
Query: 119 VTRYAGLWKS----------RHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII 168
A + HW +RK++G WYN DS APQ + FLD +
Sbjct: 105 DAEPAQIDPELESAFICHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFY-LSAFLDSLK 163
Query: 169 GLGGEVLLVKND 180
G G + +VK +
Sbjct: 164 GAGWSIFIVKGN 175
>sp|Q8LQ36|ATX3_ORYSJ Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica
GN=Os01g0851400 PE=3 SV=1
Length = 336
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 2 ASENCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTP---- 57
AS +YHE Q+ + C +H +N Q F+ L+ +A + LD +Q +
Sbjct: 7 ASNGGLLYHEVQEGKLCAVHCVNTTLQGP-FFSEFDLSALA--VDLDQRERQVMSEGAAG 63
Query: 58 ---------LSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGEN 108
L+ H+ +L G++ I VL ALE VW + I LD +
Sbjct: 64 AATTAAGDFLAEGEGSHNVSLGGDFSIQVLQKALE------VW-----DLQVIPLDSPD- 111
Query: 109 CLMGIVINVPVTRYAGLWK-SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYI 167
+G + P A + HW +RK++G WYN +S + AP+ + F+D +
Sbjct: 112 --VGSCLFDPELETAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFY-LSAFIDTL 168
Query: 168 IGLGGEVLLVKND 180
G G + V+ +
Sbjct: 169 KGSGWSIFAVRGN 181
>sp|Q9W689|ATX3_CHICK Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1
Length = 363
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
I+HERQ+ C H LNNL Q E F+ L+ IA++ LD + V + +
Sbjct: 4 IFHERQEGSLCAQHCLNNLLQGE-YFSPVELSSIAQQ--LDEEERMRMAEGGVSSEEYRT 60
Query: 68 AL---------TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
L +G + I V+ AL+ G ++ + E +GI P
Sbjct: 61 FLQQPSVNMDDSGFFSIQVISNALKVWGLELIL-----------FNSPEYQRLGI---DP 106
Query: 119 VTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLV 177
+ + + + HW +RK+ W+NL+S P+ D+ + FL + G + +V
Sbjct: 107 INEKSFICNYKEHWFTVRKLGKQWFNLNSLLMGPELISDTY-LALFLAQLQQEGYSIFVV 165
Query: 178 KND 180
K D
Sbjct: 166 KGD 168
>sp|Q9H3M9|ATX3L_HUMAN Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2
Length = 355
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 24/181 (13%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIA------EKLVLDYPNKQTWTPLSVV 61
I+HE+Q+ C H LNNL Q E F+ L IA E++ + + L+ +
Sbjct: 4 IFHEKQEGFLCAQHCLNNLLQGE-YFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFL 62
Query: 62 FKPHHNAL-TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVT 120
+P N TG + I V+ AL+ G ++ H E + +D P+
Sbjct: 63 QQPSENMDDTGFFSIQVISNALKFWGLEII-HFNNPEYQKLGID-------------PIN 108
Query: 121 RYAGLWK-SRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKN 179
+ + +HW +RK W+NL+S P+ D+ + FL + V +VK
Sbjct: 109 ERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTC-LANFLARLQQQAYSVFVVKG 167
Query: 180 D 180
D
Sbjct: 168 D 168
>sp|P54252|ATX3_HUMAN Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=4
Length = 364
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
I+HE+Q+ C H LNNL Q E F+ L+ IA +L D + V + +
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQL--DEEERMRMAEGGVTSEDYRT 60
Query: 68 AL---------TGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
L +G + I V+ AL+ G ++ + E + +D P
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNS-PEYQRLRID-------------P 106
Query: 119 VTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLV 177
+ + + + HW +RK+ W+NL+S P+ D+ + FL + G + +V
Sbjct: 107 INERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFVV 165
Query: 178 KND 180
K D
Sbjct: 166 KGD 168
>sp|O35815|ATX3_RAT Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=1 SV=1
Length = 355
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
I+HE+Q+ C H LNNL Q E F+ L+ IA + LD + V + +
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQ--LDEEERLRMAEGGVTSEDYRT 60
Query: 68 AL---TGNYD------INVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
L +GN D I V+ AL+ G ++ + E + +D P
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFN-SPEYQRLRID-------------P 106
Query: 119 VTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLV 177
+ + + + HW +RK+ W+NL+S P+ D+ + FL + G + +V
Sbjct: 107 INERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFVV 165
Query: 178 KND 180
K D
Sbjct: 166 KGD 168
>sp|Q9CVD2|ATX3_MOUSE Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2
Length = 355
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
I+HE+Q+ C H LNNL Q E F+ L+ IA + LD + V + +
Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGE-YFSPVELSSIAHQ--LDEEERLRMAEGGVTSEDYRT 60
Query: 68 AL---TGNYD------INVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVP 118
L +GN D I V+ AL+ G ++ + E + +D P
Sbjct: 61 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFN-SPEYQRLRID-------------P 106
Query: 119 VTRYAGLWKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLV 177
+ + + + HW +RK+ W+NL+S P+ D+ + FL + G + +V
Sbjct: 107 INERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTY-LALFLAQLQQEGYSIFVV 165
Query: 178 KND 180
K D
Sbjct: 166 KGD 168
>sp|Q60XN1|ATX3_CAEBR Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1
Length = 319
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 6 CKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPH 65
I+ ERQ+ C H+LN L Q + FT +L ++A ++ + + V +
Sbjct: 9 SSIFFERQQAALCAQHALNMLLQ-DSLFTYENLRDLARQMD-QMEHDILGNNANAVGRSE 66
Query: 66 HNALTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGL 125
+ +G + I V+ ALE + L EN M P+T A +
Sbjct: 67 NMNDSGFFSIQVIEKALETFD--------------LKLINMENPAMAEFKANPLTARAYV 112
Query: 126 WKSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVK 178
R HW LRK W+ L+S + P+ D+ V+E+L + +V+
Sbjct: 113 LNLREHWFVLRKFGNQWFELNSVKNGPKLLTDTY-VKEYLHQFAAENYSIFVVQ 165
>sp|O17850|ATX3_CAEEL Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1
Length = 317
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Query: 8 IYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHN 67
I+ E Q+ C H+LN L Q + + L ++A + +D +Q + N
Sbjct: 10 IFFEHQEAALCAQHALNMLLQ-DALYKWQDLRDLA--IQMDKMEQQILGNANPTPGRSEN 66
Query: 68 A-LTGNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLW 126
+G + I VL ALE ++ L EN M N P+T A +
Sbjct: 67 MNESGYFSIQVLEKALE--------------TFSLKLTNIENPAMVDYKNNPLTARAYIC 112
Query: 127 KSR-HWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVK 178
R HW LRK W+ L+S P+ D+ V FL + G + +V+
Sbjct: 113 NLREHWFVLRKFGNQWFELNSVNRGPKLLSDTY-VSMFLHQVSSEGYSIFVVQ 164
>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 GN=rep PE=2 SV=1
Length = 6733
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 106 GENCL-------MGIVINVP---VTRYAGLWKSRHWVALRKIDGVWYNLD 145
G +CL +G VP V + G KS HWVA RK+ GVWY D
Sbjct: 1902 GYDCLARLQQVALGSCREVPADAVLMFFGQDKSGHWVAARKVCGVWYTFD 1951
>sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 GN=1a PE=3 SV=1
Length = 4445
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 106 GENCL-------MGIVINVP---VTRYAGLWKSRHWVALRKIDGVWYNLD 145
G +CL +G VP V + G KS HWVA RK+ GVWY D
Sbjct: 1902 GYDCLARLQQVALGSCREVPADAVLMFFGQDKSGHWVAARKVCGVWYTFD 1951
>sp|B2WBA7|PESC_PYRTR Pescadillo homolog OS=Pyrenophora tritici-repentis (strain
Pt-1C-BFP) GN=nop7 PE=3 SV=2
Length = 679
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 71 GNYDINVLIAALEGRGKSVVWHDRRNEASAIDLDGGENC 109
G YD N+ +AA + G++ + D +E +A D+DG E+
Sbjct: 488 GEYDPNLPLAAQQPEGEAEAFEDEGDEETAFDVDGDEDM 526
>sp|Q9LKI5|XPF_ARATH DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1
SV=2
Length = 956
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 119 VTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYII 168
+T +GL+KS + R++D +W+ L Q D K +R+ LDY++
Sbjct: 241 LTVESGLFKSFDEIVRRQLDPIWHTLGK--RTKQLVSDLKTLRKLLDYLV 288
>sp|P0C6V7|R1AB_BEV Replicase polyprotein 1ab OS=Berne virus GN=rep PE=1 SV=1
Length = 6857
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 102 DLDGGENCL-------MGIVINVP---VTRYAGLWKSRHWVALRKIDGVWYNLDSD 147
D+ G +CL G + VP V ++G + HW A RKI WY D +
Sbjct: 1944 DVRVGFDCLSRLQQVNCGFCVEVPAQAVLMFSGKDQCGHWTAARKIVDKWYTFDDN 1999
>sp|P0C6F3|R1A_BEV Replicase polyprotein 1a OS=Berne virus GN=1a PE=1 SV=1
Length = 4569
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 102 DLDGGENCL-------MGIVINVP---VTRYAGLWKSRHWVALRKIDGVWYNLDSD 147
D+ G +CL G + VP V ++G + HW A RKI WY D +
Sbjct: 1944 DVRVGFDCLSRLQQVNCGFCVEVPAQAVLMFSGKDQCGHWTAARKIVDKWYTFDDN 1999
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,673,353
Number of Sequences: 539616
Number of extensions: 2944256
Number of successful extensions: 6202
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6164
Number of HSP's gapped (non-prelim): 32
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)