Query 030121
Match_columns 182
No_of_seqs 109 out of 202
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o65_A Putative ataxin-3-like 100.0 3.4E-67 1.2E-71 430.2 11.9 161 5-181 2-170 (191)
2 2lw6_A Avrpiz-T protein; plant 73.4 2.1 7.1E-05 29.0 2.4 19 125-143 10-31 (80)
3 3zua_A CLD, alpha-hemolysin tr 71.3 26 0.0009 25.3 8.6 119 14-178 10-132 (142)
4 2ayn_A Ubiquitin carboxyl-term 68.6 5.5 0.00019 33.7 4.6 40 108-153 328-369 (404)
5 3k8u_A Putative ABC transporte 68.4 32 0.0011 25.3 8.4 115 8-156 6-124 (156)
6 3i3t_A Ubiquitin carboxyl-term 60.0 9.2 0.00032 31.3 4.3 59 108-181 294-352 (355)
7 1vjv_A Ubiquitin carboxyl-term 59.3 8.4 0.00029 32.9 4.1 40 108-153 346-389 (415)
8 3nhe_A Ubiquitin carboxyl-term 55.8 11 0.00039 30.6 4.2 40 108-153 284-325 (348)
9 3b79_A Toxin secretion ATP-bin 50.5 41 0.0014 23.4 6.0 100 16-155 5-109 (129)
10 3mhs_A Ubiquitin carboxyl-term 50.3 14 0.00049 32.1 4.1 57 108-179 416-473 (476)
11 2y6e_A Ubiquitin carboxyl-term 48.6 19 0.00065 30.0 4.5 59 108-181 300-360 (367)
12 2vhf_A Ubiquitin carboxyl-term 45.0 23 0.00079 31.2 4.5 45 109-164 278-334 (374)
13 1nb8_A Ubiquitin carboxyl-term 42.5 18 0.00062 30.3 3.4 38 108-151 241-280 (353)
14 2gfo_A Ubiquitin carboxyl-term 42.4 32 0.0011 29.3 5.0 38 108-151 337-376 (396)
15 3ihr_A Ubiquitin carboxyl-term 36.6 70 0.0024 27.6 6.2 53 128-180 162-226 (328)
16 1d4u_A Nucleotide excision rep 32.6 27 0.00092 25.6 2.5 26 62-87 71-99 (111)
17 1avo_A 11S regulator; proteaso 32.5 1 3.4E-05 29.8 -4.8 23 22-45 36-58 (60)
18 3eq5_A SKI-like protein; TGF-b 29.1 39 0.0013 25.4 2.9 29 15-46 50-78 (125)
19 3rii_A Ubiquitin carboxyl-term 28.2 50 0.0017 27.0 3.7 54 128-181 167-232 (233)
20 4dm9_A Ubiquitin carboxyl-term 27.7 52 0.0018 26.8 3.7 30 128-157 164-193 (228)
21 1xd3_A Ubiquitin carboxyl-term 27.3 53 0.0018 26.7 3.7 30 128-157 167-196 (230)
22 2f1z_A Ubiquitin carboxyl-term 26.2 48 0.0017 29.3 3.5 38 108-151 410-449 (522)
23 1k8v_A Neuropeptide F; moniezi 23.9 35 0.0012 20.8 1.5 21 149-169 9-29 (40)
24 2wdt_A Ubiquitin carboxyl-term 22.9 64 0.0022 26.3 3.4 30 128-157 162-191 (232)
25 3rkq_A Homeobox protein NKX-2. 22.6 77 0.0026 19.1 3.1 30 19-48 13-42 (58)
26 3ijm_A Uncharacterized restric 22.1 50 0.0017 25.4 2.4 22 109-139 110-131 (151)
27 3ihp_A Ubiquitin carboxyl-term 21.9 1E+02 0.0035 29.6 5.0 35 108-147 797-831 (854)
28 1cmx_A Protein (ubiquitin YUH1 20.6 79 0.0027 25.9 3.5 29 128-156 164-193 (235)
No 1
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=100.00 E-value=3.4e-67 Score=430.21 Aligned_cols=161 Identities=29% Similarity=0.412 Sum_probs=145.3
Q ss_pred CCcceeeeccccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCC---CCCCCC---CCceeeccccCCc-CCCccHHH
Q 030121 5 NCKIYHERQKLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYP---NKQTWT---PLSVVFKPHHNAL-TGNYDINV 77 (182)
Q Consensus 5 ~~~iYhEkQ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~---~~~~~~---~~~~~~~p~~n~~-~GnydinV 77 (182)
+..||||||+++|||+||||||||| ++||++||++||++||+.|+ ++++++ +.+++.+||+||+ +|||||||
T Consensus 2 m~~IYhEkQ~~~LCalHaLNnLLQg-~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInV 80 (191)
T 3o65_A 2 MDFIFHEKQEGFLCAQHCLNNLLQG-EYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQV 80 (191)
T ss_dssp CTTSCCCCCCTTCHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHH
T ss_pred cccceeeccchhhHHHHHHHHHhcc-ccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHH
Confidence 3569999999999999999999999 89999999999999999886 345555 3456689999999 99999999
Q ss_pred HHHHHHhCCCeEEeccCCccc-ccccCCCCccceEEEEEecccccccccccccceEEEEeeCCEEEEeeCCCCCCeEcCC
Q 030121 78 LIAALEGRGKSVVWHDRRNEA-SAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKD 156 (182)
Q Consensus 78 l~~AL~~~g~~~~w~d~r~~~-~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~ 156 (182)
|++||++||++++|||+|+.. ..++ +.++.|||||+ +|||||||||+|+||||||++++|++|++
T Consensus 81 l~~AL~~~glelv~~d~~~~~~~~~~----p~~~~~FI~N~----------~~HWfaiRkigg~WyNLdS~l~~P~~i~~ 146 (191)
T 3o65_A 81 ISNALKFWGLEIIHFNNPEYQKLGID----PINERSFICNY----------KQHWFTIRKFGKHWFNLNSLLAGPELISD 146 (191)
T ss_dssp HHHHHHTTTCEEEETTCHHHHHTCCC----GGGCCEEEEEE----------SSCEEEEEEETTEEEECCTTSSSCEEECH
T ss_pred HHHHHHHcCCeEEECCCchhhhhcCC----hhhhhhhhhcc----------ccceeeEEecCCEEEEccCCCCCCCCcCh
Confidence 999999999999999998764 3344 44889999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEEcCC
Q 030121 157 SKEVREFLDYIIGLGGEVLLVKNDK 181 (182)
Q Consensus 157 ~~~L~~fL~~~~~~g~~ifvV~~~~ 181 (182)
+| |..||.|++.+|||||||+|+-
T Consensus 147 ~y-L~~fL~ql~~eg~siFvV~g~l 170 (191)
T 3o65_A 147 TC-LANFLARLQQQAYSVFVVKGDL 170 (191)
T ss_dssp HH-HHHHHGGGGSTTEEEEEEESCC
T ss_pred HH-HHHHHHHHHHCCCEEEEEcCCC
Confidence 95 9999999999999999999863
No 2
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=73.42 E-value=2.1 Score=29.04 Aligned_cols=19 Identities=42% Similarity=0.994 Sum_probs=15.5
Q ss_pred cccccceEEEEeeCC---EEEE
Q 030121 125 LWKSRHWVALRKIDG---VWYN 143 (182)
Q Consensus 125 ~~~~~HWfaIRki~g---~wyN 143 (182)
+|..|||=+|||-.| ++|.
T Consensus 10 lyngrhwgtirkkagwavrfye 31 (80)
T 2lw6_A 10 LYNGRHWGTIRKKAGWAVRFYE 31 (80)
T ss_dssp EETTEEEEEEEEETTSCEEEEE
T ss_pred eEcCccceeeeeccceEEEeee
Confidence 466999999999987 5664
No 3
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=71.32 E-value=26 Score=25.28 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=67.7
Q ss_pred cccchHHHHhHhhcCCCCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCcCCCccHHHHHHHHHhCCCeEEecc
Q 030121 14 KLQFCLLHSLNNLFQQEGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHD 93 (182)
Q Consensus 14 ~~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~~GnydinVl~~AL~~~g~~~~w~d 93 (182)
...=|++.||=.+++- +=.+.+++.|...+... + +-.+..-|.+|.+..|+++..+.
T Consensus 10 ~~~dcglacLa~i~~~--~g~~~s~~~L~~~~~~~-----------------~----~g~s~~~l~~aa~~~Gl~a~~~~ 66 (142)
T 3zua_A 10 HKIDYGLYALEILAQY--HNVSVNPEEIKHRFDTD-----------------G----TGLGLTSWLLAAKSLELKVKQVK 66 (142)
T ss_dssp CCCCHHHHHHHHHHHH--TTCCCCHHHHHHHTCTT-----------------S----SCCCHHHHHHHHHTTTEEEEEEE
T ss_pred CCCCcHHHHHHHHHHH--cCCCCCHHHHHHHcCCC-----------------c----CCcCHHHHHHHHHHCCCeeEEee
Confidence 3467999999888863 22233344444444211 0 22678889999999999998764
Q ss_pred CCcc-cccccCCCCccceEEEEEecccccccccccccceEEEEeeC---CEEEEeeCCCCCCeEcCCHHHHHHHHHHHHh
Q 030121 94 RRNE-ASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKID---GVWYNLDSDFHAPQCFKDSKEVREFLDYIIG 169 (182)
Q Consensus 94 ~r~~-~~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~---g~wyNLDS~l~~P~~i~~~~~L~~fL~~~~~ 169 (182)
.... ...+.+ =.|+-. +..|||-|-+++ +..+-.|.....|+.++- .+|.+.-
T Consensus 67 ~~~~~L~~l~l--------P~Il~~---------~~g~~~Vv~~~~~~~~~~~I~dP~~g~~~~~s~----~ef~~~w-- 123 (142)
T 3zua_A 67 KTIDRLNFISL--------PALVWR---------EDGRHFILTKVSKEANRYLIFDLEQRNPRVLEQ----SEFEALY-- 123 (142)
T ss_dssp CCHHHHTTSSS--------SEEECC---------TTSCCEEEEEEETTTTEEEEEETTTTEEEEEEH----HHHHHHC--
T ss_pred cCHHHHhcCCC--------CEEEEE---------cCCCEEEEEEEeCCCCEEEEEcCCCCCcEEecH----HHHHhhC--
Confidence 3211 111111 123221 244566666674 578999987666888853 3443332
Q ss_pred CCcEEEEEE
Q 030121 170 LGGEVLLVK 178 (182)
Q Consensus 170 ~g~~ifvV~ 178 (182)
.|+-|++..
T Consensus 124 ~G~~l~~~~ 132 (142)
T 3zua_A 124 QGHIILIAS 132 (142)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 455555543
No 4
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=68.60 E-value=5.5 Score=33.67 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.7
Q ss_pred cceEEEEEeccccccccc-ccccceEEEEee-CCEEEEeeCCCCCCeE
Q 030121 108 NCLMGIVINVPVTRYAGL-WKSRHWVALRKI-DGVWYNLDSDFHAPQC 153 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~-~~~~HWfaIRki-~g~wyNLDS~l~~P~~ 153 (182)
-.+.|+|++. |- ...-|++|..|- +|.||.+|=..-.|+.
T Consensus 328 Y~L~avv~H~------G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~ 369 (404)
T 2ayn_A 328 YDLQAVLTHQ------GRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVT 369 (404)
T ss_dssp EEEEEEEEEE------SSSTTSSEEEEEEEEETTEEEEEBTTBCCCBC
T ss_pred EEEEEEEEec------CCCCCCCCeEEEEECCCCeEEEeecccceecC
Confidence 4788999987 21 335699999887 9999999977666654
No 5
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=68.36 E-value=32 Score=25.26 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=65.4
Q ss_pred ceeeeccc-cchHHHHhHhhcCC-CCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCcCCCccHHHHHHHHHhC
Q 030121 8 IYHERQKL-QFCLLHSLNNLFQQ-EGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGR 85 (182)
Q Consensus 8 iYhEkQ~~-~lCalHaLNnLlQ~-~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~~GnydinVl~~AL~~~ 85 (182)
+-+-+|.. .=||+.||-.+++- ...++..+ |...+... + +-.+..-|.+|++..
T Consensus 6 ~p~~~Q~~~~dcglacLa~i~~~~g~~~s~~~---L~~~~~~~-----------------~----~g~s~~~l~~~a~~~ 61 (156)
T 3k8u_A 6 YKLVPQIDTRDCGPAVLASVAKHYGSNYSIAY---LRELSKTN-----------------K----QGTTALGIVEAAKKL 61 (156)
T ss_dssp CCCCCCSSTTCHHHHHHHHHHHHTTCCCCHHH---HHHHTTCB-----------------T----TBCCHHHHHHHHHHT
T ss_pred CceEECCCCCCHHHHHHHHHHHHhCCCCCHHH---HHHHcCCC-----------------C----CCcCHHHHHHHHHHC
Confidence 34456765 68999999988863 02345444 44444211 1 226788899999999
Q ss_pred CCeEEeccCCcccccccCCCCccceEEEEEecccccccccccccceEEEEeeC-CEEEEeeCCCC-CCeEcCC
Q 030121 86 GKSVVWHDRRNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKID-GVWYNLDSDFH-APQCFKD 156 (182)
Q Consensus 86 g~~~~w~d~r~~~~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~-g~wyNLDS~l~-~P~~i~~ 156 (182)
|+++..+..... .+.+...+ .=+|+-+... -...||+-|.+++ +..+-.|.... +|+.++-
T Consensus 62 Gl~a~~~~~~~~--~~~l~~~~---lP~I~~~~~~-----g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~ 124 (156)
T 3k8u_A 62 GFETRSIKADMT--LFDYNDLT---YPFIVHVIKG-----KRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSK 124 (156)
T ss_dssp TEEEEEEECCGG--GGGCTTCC---SCEEEEEEET-----TEEEEEEEEEEEETTEEEEEECSTTTEEEEEEH
T ss_pred CCeeEEEEeehh--hhhHhcCC---CCEEEEEEec-----CCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcH
Confidence 999977643211 11111001 1123321000 0015999998885 46777887665 5888853
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=59.99 E-value=9.2 Score=31.30 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=39.7
Q ss_pred cceEEEEEecccccccccccccceEEEEeeCCEEEEeeCCCCCCeEcCCHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~l~~P~~i~~~~~L~~fL~~~~~~g~~ifvV~~~~ 181 (182)
-.+.|+|++.- -...-|++|..|-++.||.+|=..-.|+.. .++ +..+.|-+|-.+.++
T Consensus 294 Y~L~avv~H~G------~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~---~~v------~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 294 YQLYALCNHSG------SVHYGHYTALCRCQTGWHVYNDSRVSPVSE---NQV------ASSEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEEEEEEE------ETTEEEEEEEEEETTEEEEEETTEEEEECH---HHH------HTSCCSEEEEEEC--
T ss_pred eEEEEEEEecC------CCCCCeEEEEEEcCCeEEEEcCCCcEECCH---HHc------CCCCcEEEEEEeccC
Confidence 46778888752 234689999999999999999776655532 222 124678888776554
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=59.29 E-value=8.4 Score=32.88 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=30.1
Q ss_pred cceEEEEEecccccccc-cccccceEEEEee---CCEEEEeeCCCCCCeE
Q 030121 108 NCLMGIVINVPVTRYAG-LWKSRHWVALRKI---DGVWYNLDSDFHAPQC 153 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~-~~~~~HWfaIRki---~g~wyNLDS~l~~P~~ 153 (182)
-.+.|+|++. | -...-|++|..|- +|.||.+|=..-.|+.
T Consensus 346 Y~L~aVv~H~------G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~ 389 (415)
T 1vjv_A 346 YNLIGVITHQ------GANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 389 (415)
T ss_dssp EEEEEEEEEE------SSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC
T ss_pred EEEEEEEEec------CCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC
Confidence 4789999997 2 1335699999887 8999999976554443
No 8
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=55.76 E-value=11 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=28.9
Q ss_pred cceEEEEEecccccccccccccceEEEEee--CCEEEEeeCCCCCCeE
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKI--DGVWYNLDSDFHAPQC 153 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki--~g~wyNLDS~l~~P~~ 153 (182)
-.+.|+|++.- -...-|++|..|- +|.||.+|=..-.|+.
T Consensus 284 Y~L~avv~H~G------~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~ 325 (348)
T 3nhe_A 284 YNLYAVSNHSG------TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS 325 (348)
T ss_dssp EEEEEEEEEEE------CSSCEEEEEEEECTTTCCEEEEETTEEEEEC
T ss_pred EEEEEEEEccC------CCCCcccEEEEccCCCCcEEEEeCCCceECC
Confidence 36778888762 2236799998876 7899999987655553
No 9
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=50.51 E-value=41 Score=23.41 Aligned_cols=100 Identities=17% Similarity=0.040 Sum_probs=58.1
Q ss_pred cchHHHHhHhhcCC-CCCCCHHHHHHHHHHhcccCCCCCCCCCCceeeccccCCcCCCccHHHHHHHHHhCCCeEEeccC
Q 030121 16 QFCLLHSLNNLFQQ-EGAFTRASLNEIAEKLVLDYPNKQTWTPLSVVFKPHHNALTGNYDINVLIAALEGRGKSVVWHDR 94 (182)
Q Consensus 16 ~lCalHaLNnLlQ~-~~~Ft~~dL~~Ia~~Ld~~e~~~~~~~~~~~~~~p~~n~~~GnydinVl~~AL~~~g~~~~w~d~ 94 (182)
.-|++-||=.+++- ...++.. .|...+... .+-.+..-|.+|++..|+++..+..
T Consensus 5 ~dcgla~L~~i~~~~g~~~~~~---~l~~~~~~~---------------------~~g~s~~~l~~~a~~~Gl~~~~~~~ 60 (129)
T 3b79_A 5 KDPLLNSLIYVSRYYGLANSPE---ALVNGLPLS---------------------DGKLTPFLLPRAAERAGLVAKENRA 60 (129)
T ss_dssp CCHHHHHHHHHHHHTTCCCCHH---HHHTTCCCB---------------------TTBCCTTTHHHHHHHHTEEEEEEEC
T ss_pred CCcHHHHHHHHHHHhCCCCCHH---HHHhcCCCc---------------------CCCCCHHHHHHHHHHCCCeEEEEEC
Confidence 46888888887752 0224443 444444211 1224555699999999999986553
Q ss_pred CcccccccCCCCccceEEEEEecccccccccccccceEEEEeeCC---EEEEeeCC-CCCCeEcC
Q 030121 95 RNEASAIDLDGGENCLMGIVINVPVTRYAGLWKSRHWVALRKIDG---VWYNLDSD-FHAPQCFK 155 (182)
Q Consensus 95 r~~~~~~~~~~~~~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g---~wyNLDS~-l~~P~~i~ 155 (182)
. ...+..- . .=+|+-. +..||+.|.++++ ..+-.|.. -.+++.++
T Consensus 61 ~--~~~L~~l----~-lP~I~~~---------~~~h~vVl~~~~~~~~~~~i~dp~~~~g~~~~~ 109 (129)
T 3b79_A 61 E--LEKISSL----I-LPAILVL---------KGGDSCVLNSINMETREAEVTTLESGMVPISIP 109 (129)
T ss_dssp C--GGGSCGG----G-CSEEEEE---------GGGEEEEEEEEETTTTEEEEECTTTTTSCEEEE
T ss_pred C--HHHCCcC----C-CCEEEEE---------cCCCEEEEEEEcCCCceEEEEccCCCCCcEEee
Confidence 2 1111100 0 1123322 3579999999965 57788875 35677774
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=50.30 E-value=14 Score=32.09 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=36.9
Q ss_pred cceEEEEEecccccccccccccceEEEEee-CCEEEEeeCCCCCCeEcCCHHHHHHHHHHHHhCCcEEEEEEc
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKI-DGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKN 179 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki-~g~wyNLDS~l~~P~~i~~~~~L~~fL~~~~~~g~~ifvV~~ 179 (182)
-.+.|+|++. |-...-|++|..|. +|+||-+|=..-.|+.. .++. .++.|-+|-++.
T Consensus 416 Y~L~avv~H~------G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~---~~v~------~~~aYiLfY~r~ 473 (476)
T 3mhs_A 416 YELIGIVSHK------GTVNEGHYIAFCKISGGQWFKFNDSMVSSISQ---EEVL------KEQAYLLFYTIR 473 (476)
T ss_dssp EEEEEEEEEE------ECSSSEEEEEEEECTTSCEEEEETTEEEEECH---HHHT------TSCEEEEEEEEE
T ss_pred EEEEEEEEeC------CCCCCCceEEEEECCCCcEEEEeCCceEECCH---HHhc------cCCcEEEEEEEe
Confidence 3567888776 22346799999887 78999999766555422 2222 145677766554
No 11
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=48.64 E-value=19 Score=30.02 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=37.2
Q ss_pred cceEEEEEecccccccccccccceEEEEee--CCEEEEeeCCCCCCeEcCCHHHHHHHHHHHHhCCcEEEEEEcCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKI--DGVWYNLDSDFHAPQCFKDSKEVREFLDYIIGLGGEVLLVKNDK 181 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki--~g~wyNLDS~l~~P~~i~~~~~L~~fL~~~~~~g~~ifvV~~~~ 181 (182)
-.+.|+|++. |-...-|++|..|- +|+||.+|=..-.|+... ++. ..+.|-+|-.+.+.
T Consensus 300 Y~L~avv~H~------G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~---~v~------~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 300 YDLIAVSNHY------GAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASED---QIV------TKAAYVLFYQRRDD 360 (367)
T ss_dssp EEEEEEEEEE------CSSSSCEEEEEEECTTTCCEEEEETTEEEECCGG---GTS------STTEEEEEEEECCC
T ss_pred EEEEEEeecC------CCCCCCeeeEEEEcCCCCeEEEECCCCceECCHH---HcC------CCCcEEEEEEEcCC
Confidence 3667777775 22357899999886 589999987654443221 121 13557777666554
No 12
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=44.97 E-value=23 Score=31.22 Aligned_cols=45 Identities=33% Similarity=0.549 Sum_probs=34.5
Q ss_pred ceEEEEEecccccccccccccceEEEEee---CCEEEEeeCCCCC---------CeEcCCHHHHHHHH
Q 030121 109 CLMGIVINVPVTRYAGLWKSRHWVALRKI---DGVWYNLDSDFHA---------PQCFKDSKEVREFL 164 (182)
Q Consensus 109 ~~~gfI~N~~~~~~~~~~~~~HWfaIRki---~g~wyNLDS~l~~---------P~~i~~~~~L~~fL 164 (182)
.++|.|| . .+.|-.|--|- +|.||-+||+-+. |+...-. ++..||
T Consensus 278 eL~aVlt-a---------dsgHYvafVK~~~~d~~W~~FDsmadr~g~~~g~nip~v~~c~-~~~~~l 334 (374)
T 2vhf_A 278 ELFAVLC-I---------ETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNIPQVTPCP-EVGEYL 334 (374)
T ss_dssp EEEEEEE-E---------ETTEEEEEEECSSSTTCEEEEETTC-------CCCCCEEEECT-HHHHTT
T ss_pred EEEEEEE-c---------cCCceEEEEEecCCCCCeEEEechhcccCcccCCCCCceEECc-cHHHHh
Confidence 6788898 3 38999998775 6899999999754 7777666 477777
No 13
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=42.52 E-value=18 Score=30.26 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=27.2
Q ss_pred cceEEEEEecccccccccccccceEEEEe--eCCEEEEeeCCCCCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRK--IDGVWYNLDSDFHAP 151 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRk--i~g~wyNLDS~l~~P 151 (182)
-.+.|+|++. |-...-|++|..| -+|.||.+|=..-.|
T Consensus 241 Y~L~avv~H~------G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 280 (353)
T 1nb8_A 241 YILHAVLVHS------GDNHGGHYVVYLNPKGDGKWCKFDDDVVSR 280 (353)
T ss_dssp EEEEEEEEEE------SSTTCCCEEEEECTTSSSCCEEEETTEEEE
T ss_pred EEEEEEEEEe------CCCCCcEEEEEEecCCCCCEEEEECcceEE
Confidence 3567888876 2234789999876 478999998765444
No 14
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=42.37 E-value=32 Score=29.32 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=27.1
Q ss_pred cceEEEEEecccccccccccccceEEEEee--CCEEEEeeCCCCCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKI--DGVWYNLDSDFHAP 151 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki--~g~wyNLDS~l~~P 151 (182)
-.+.|+|++. |-...-|++|..|- +|.||.+|=..-.|
T Consensus 337 Y~L~avv~H~------G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 376 (396)
T 2gfo_A 337 YNLFSVSNHY------GGLDGGHYTAYCKNAARQRWFKFDDHEVSD 376 (396)
T ss_dssp BEEEEEEEEE------SCTTTCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred EEEEEEEEec------CCCCCCceEEEEcCCCCCCEEEEeCCCeEE
Confidence 4677777775 22346899998776 48999998765444
No 15
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=36.57 E-value=70 Score=27.56 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=37.7
Q ss_pred ccceEEEEeeCCEEEEeeCCCCCCeEcCCH------HHHHHHHHHHHh------CCcEEEEEEcC
Q 030121 128 SRHWVALRKIDGVWYNLDSDFHAPQCFKDS------KEVREFLDYIIG------LGGEVLLVKND 180 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~~------~~L~~fL~~~~~------~g~~ifvV~~~ 180 (182)
.-|++|.-+++|.=|-||-..+.|+..|.. .+....+++... =..+++.+++|
T Consensus 162 ~~HFIafV~~dG~LyELDG~k~gPI~hG~~~~e~~l~~a~~vi~~ri~~y~~~eirFslmAL~~d 226 (328)
T 3ihr_A 162 AFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSD 226 (328)
T ss_dssp CEEEEEEEEETTEEEEEETTSSSCEEEEECBTTBCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred ceeEEEEEeeCCEEEEcCCCCCCCcccCCCCchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 458888889999999999999999998763 223333433221 14788888776
No 16
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=32.59 E-value=27 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=17.9
Q ss_pred eccccCCc---CCCccHHHHHHHHHhCCC
Q 030121 62 FKPHHNAL---TGNYDINVLIAALEGRGK 87 (182)
Q Consensus 62 ~~p~~n~~---~GnydinVl~~AL~~~g~ 87 (182)
-|||..-. .=+.-.||..+||++||=
T Consensus 71 ~NPh~~~~~~MkLYlr~qVe~~A~~vwGS 99 (111)
T 1d4u_A 71 KNPHHSQWGDMKLYLKLQIVKRSLEVWGS 99 (111)
T ss_dssp SCSSSCCCSCCEEECHHHHHHHHHHHTSS
T ss_pred CCCCCCCCccceeehHHHHHHHHHHHHCC
Confidence 47776321 224558999999999983
No 17
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=32.50 E-value=1 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=16.6
Q ss_pred HhHhhcCCCCCCCHHHHHHHHHHh
Q 030121 22 SLNNLFQQEGAFTRASLNEIAEKL 45 (182)
Q Consensus 22 aLNnLlQ~~~~Ft~~dL~~Ia~~L 45 (182)
=||+||++ |.|+-.+|++|...|
T Consensus 36 eln~LL~~-~~f~~~dls~l~~~l 58 (60)
T 1avo_A 36 ELDAFLKE-PALNEANLSNLKAPL 58 (60)
T ss_dssp HHHHHHHS-GGGCCSCTTSSCCCC
T ss_pred HHHHHHcc-cccccccHHHhcccc
Confidence 48999998 788877776665433
No 18
>3eq5_A SKI-like protein; TGF-beta, SIG protein, structural genomics, SGC stockholm, structural GEN consortium, SGC; 2.45A {Homo sapiens}
Probab=29.14 E-value=39 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=24.3
Q ss_pred ccchHHHHhHhhcCCCCCCCHHHHHHHHHHhc
Q 030121 15 LQFCLLHSLNNLFQQEGAFTRASLNEIAEKLV 46 (182)
Q Consensus 15 ~~lCalHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld 46 (182)
.+||.-+.+|.+|++ |+..+....+.+|.
T Consensus 50 ~rLCLPQi~~~vLk~---fsl~~I~~~~~~L~ 78 (125)
T 3eq5_A 50 KRLCLPQVLNSVLRE---FTLQQINTVCDELY 78 (125)
T ss_dssp EEEEHHHHHHTTTTT---SCHHHHHHHHHHHT
T ss_pred EEeEHHHHHHHHHHc---CCHHHHHHHHHhcc
Confidence 489999999999986 88777777777775
No 19
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=28.18 E-value=50 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.7
Q ss_pred ccceEEEEeeCCEEEEeeCCCCCCeEcCCH------HH----HHHHHHHHHhC--CcEEEEEEcCC
Q 030121 128 SRHWVALRKIDGVWYNLDSDFHAPQCFKDS------KE----VREFLDYIIGL--GGEVLLVKNDK 181 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~~------~~----L~~fL~~~~~~--g~~ifvV~~~~ 181 (182)
.-|++|.-+++|.=|-||-..+.|+..|.. .+ +..++...-.. ..+++.+++|.
T Consensus 167 ~~HFIafV~~dG~LyELDG~k~gPi~~G~~~~e~~l~~a~~vi~~ri~~~~~~ei~FslmAL~~d~ 232 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDR 232 (233)
T ss_dssp GSEEEEEEEETTEEEEECTTSSSCEEEEECCSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEECC
T ss_pred ceeEEEEEEeCCeEEEcCCCCCCCcccCCCCchhHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCC
Confidence 469999999999999999999999988753 11 22233222111 47888888764
No 20
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=27.73 E-value=52 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=26.9
Q ss_pred ccceEEEEeeCCEEEEeeCCCCCCeEcCCH
Q 030121 128 SRHWVALRKIDGVWYNLDSDFHAPQCFKDS 157 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~~ 157 (182)
.-|++|.-+++|.=|-||-..+.|+..|..
T Consensus 164 ~~HFIafV~~dG~LyELDG~k~gPi~~G~~ 193 (228)
T 4dm9_A 164 NFHFILFNNVDGHLYELDGRMPFPVNHGAS 193 (228)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEEEEEC
T ss_pred CceEEEEEEeCCeEEEcCCCCCCCceeccC
Confidence 469999999999999999999999998764
No 21
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=27.28 E-value=53 Score=26.74 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.8
Q ss_pred ccceEEEEeeCCEEEEeeCCCCCCeEcCCH
Q 030121 128 SRHWVALRKIDGVWYNLDSDFHAPQCFKDS 157 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~~ 157 (182)
.-|++|.-+++|.=|-||-..+.|+..|..
T Consensus 167 ~~HFI~fV~~~G~LyELDG~k~gPi~~G~~ 196 (230)
T 1xd3_A 167 DLHFIALVHVDGHLYELDGRKPFPINHGET 196 (230)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEEEEEC
T ss_pred CeEEEEEEeeCCEEEEccCCCCCCeecCCC
Confidence 579999889999999999999999998853
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=26.19 E-value=48 Score=29.30 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=27.1
Q ss_pred cceEEEEEecccccccccccccceEEEEe--eCCEEEEeeCCCCCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRK--IDGVWYNLDSDFHAP 151 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRk--i~g~wyNLDS~l~~P 151 (182)
-.+.|+|++. |-...-|++|..| -+|+||.+|=..-.|
T Consensus 410 Y~L~avv~H~------G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~ 449 (522)
T 2f1z_A 410 YILHAVLVHS------GDNHGGHYVVYLNPKGDGKWCKFDDDVVSR 449 (522)
T ss_dssp EEEEEEEEEE------CSSSCSEEEEEECTTSSSCCEEEETTEEEE
T ss_pred EEEEEEEEec------ccCCCceEEEEEecCCCCCEEEEECceeEE
Confidence 3577888876 2235789999886 478999998755433
No 23
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=23.92 E-value=35 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.7
Q ss_pred CCCeEcCCHHHHHHHHHHHHh
Q 030121 149 HAPQCFKDSKEVREFLDYIIG 169 (182)
Q Consensus 149 ~~P~~i~~~~~L~~fL~~~~~ 169 (182)
+.|..+.+.++|..||+++-+
T Consensus 9 p~p~~F~s~~~l~~YL~~Lne 29 (40)
T 1k8v_A 9 PSDLVLDNKAALRDYLRQINE 29 (40)
T ss_dssp STTCSCSSCSHHHHHHHHHHH
T ss_pred CChhhcCCHHHHHHHHHHHHH
Confidence 458899998899999998854
No 24
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=22.88 E-value=64 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=26.8
Q ss_pred ccceEEEEeeCCEEEEeeCCCCCCeEcCCH
Q 030121 128 SRHWVALRKIDGVWYNLDSDFHAPQCFKDS 157 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l~~P~~i~~~ 157 (182)
.-|++|.-+++|.=|-||-..+.|+..|..
T Consensus 162 ~~HFI~fV~~~G~LyELDG~k~gPi~~G~~ 191 (232)
T 2wdt_A 162 DTHFIVFVQIEGKIIELDGRKDHPTVHCFT 191 (232)
T ss_dssp CEEEEEEEESSSEEEEECTTSSSCEEEEEC
T ss_pred CeEEEEEEEeCCEEEEccCCCCCCcccCCC
Confidence 478999888999999999999999998863
No 25
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=22.59 E-value=77 Score=19.06 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHhHhhcCCCCCCCHHHHHHHHHHhccc
Q 030121 19 LLHSLNNLFQQEGAFTRASLNEIAEKLVLD 48 (182)
Q Consensus 19 alHaLNnLlQ~~~~Ft~~dL~~Ia~~Ld~~ 48 (182)
.+.+|...++..+|-+..+..+||..|...
T Consensus 13 q~~~Le~~F~~~~yp~~~~r~~La~~l~l~ 42 (58)
T 3rkq_A 13 QVYELERRFKQQRYLSAPERDQLASVLKLT 42 (58)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCcC
Confidence 456777888877889999999999998644
No 26
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=22.11 E-value=50 Score=25.39 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=18.3
Q ss_pred ceEEEEEecccccccccccccceEEEEeeCC
Q 030121 109 CLMGIVINVPVTRYAGLWKSRHWVALRKIDG 139 (182)
Q Consensus 109 ~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g 139 (182)
-+.||+.|. +.++|+--|+=+|
T Consensus 110 I~EGFVynY---------kt~~W~rYr~g~g 131 (151)
T 3ijm_A 110 ILEGFVFNY---------KTQQWLRYRLGDG 131 (151)
T ss_dssp CCEEEEEET---------TTTEEEEEETTST
T ss_pred ceeeeeEee---------ccCceeEEEcCCC
Confidence 668999996 6899999998655
No 27
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=21.86 E-value=1e+02 Score=29.59 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=27.8
Q ss_pred cceEEEEEecccccccccccccceEEEEeeCCEEEEeeCC
Q 030121 108 NCLMGIVINVPVTRYAGLWKSRHWVALRKIDGVWYNLDSD 147 (182)
Q Consensus 108 ~~~~gfI~N~~~~~~~~~~~~~HWfaIRki~g~wyNLDS~ 147 (182)
-.++|+|++.- .-...-|-+|.+|-+|.||-+|=.
T Consensus 797 Y~L~avi~H~G-----~~~~~GHY~~~~~~~~~W~~~nD~ 831 (854)
T 3ihp_A 797 YQLFAFISHMG-----TSTMCGHYVCHIKKEGRWVIYNDQ 831 (854)
T ss_dssp EEEEEEEEEES-----SCSSCCEEEEEEEETTEEEEEETT
T ss_pred EEEEEEEEeec-----CCCCCcCeEEEEEeCCEEEEEECC
Confidence 57899999971 123478999999999999999853
No 28
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=20.58 E-value=79 Score=25.87 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=25.4
Q ss_pred ccceEEEEeeCCEEEEeeCCC-CCCeEcCC
Q 030121 128 SRHWVALRKIDGVWYNLDSDF-HAPQCFKD 156 (182)
Q Consensus 128 ~~HWfaIRki~g~wyNLDS~l-~~P~~i~~ 156 (182)
.-|++|.-+++|.=|-||-.. +.|+..|.
T Consensus 164 ~~HFI~fV~~~G~LyELDG~k~~gPi~~G~ 193 (235)
T 1cmx_A 164 NLHYITYVEENGGIFELDGRNLSGPLYLGK 193 (235)
T ss_dssp SEEEEEEEECSSEEEEECTTCTTCCEEEEE
T ss_pred CeEEEEEEeeCCEEEEecCCCCCCCeEccC
Confidence 468888888999999999999 99998774
Done!