BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030122
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 187 bits (476), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/155 (58%), Positives = 110/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYWRCY+ N
Sbjct: 10 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 69
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K L+ A+ ++FANKQD+ A+ + ++ AL
Sbjct: 70 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALG 129
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 130 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 164
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSIRPYWRCY+ N
Sbjct: 12 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSN 71
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K L+ A+ ++FANKQD+ A+ + ++ +L
Sbjct: 72 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLG 131
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 132 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 108/154 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+T PTIGFNVET+ Y N+K VWDLGGQTSIRPYWRCY+ +
Sbjct: 26 LDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYAD 85
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T AVI+VVDS+D DR+ TA L+ A L+FANKQD PGAL + VS+ L
Sbjct: 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELN 145
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L ++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF N
Sbjct: 28 LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 87
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVDS+D DR+ A+ L+ AV L+FANKQDLP A++ A +++ L
Sbjct: 88 TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 147
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH ++ R W I TCA GEGL+EG+DWLSN + S
Sbjct: 148 LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 182
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 106/155 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ IR WR Y+ N
Sbjct: 25 LDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI+V+DS+D RI A+ L+ AV L+FANKQDLP A+ A ++E L
Sbjct: 85 TEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH I+NR W I TCA GEGL+EG++WLSN LK+
Sbjct: 145 LHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKN 179
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 106/155 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ IR WR Y+ N
Sbjct: 25 LDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI+VVDS+D RI A+ L+ A L+FANKQDLP A+ A ++E L
Sbjct: 85 TEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH I+NR W I TCA GEGL+EG++WLSN+LK+
Sbjct: 145 LHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 179
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 106/155 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GEV++TIPTIGFNVETVQY NI F VWD+GGQ IR WR Y+ N
Sbjct: 8 LDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRN 67
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI+VVDS+D RI A+ L+ A L+FANKQDLP A+ A ++E L
Sbjct: 68 TEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLG 127
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH I+NR W I TCA GEGL+EG++WLSN+LK+
Sbjct: 128 LHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKN 162
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 106/144 (73%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 19 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+ A+ L+ AV L+FANKQDLP A++ A +++ L LH +++R W I
Sbjct: 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+DWLSN L++
Sbjct: 139 QATCATSGDGLYEGLDWLSNQLRN 162
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 106/144 (73%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 36 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 95
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+ A+ L+ AV L+FANKQDLP A++ A +++ L LH +++R W I
Sbjct: 96 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 155
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+DWLSN L++
Sbjct: 156 QATCATSGDGLYEGLDWLSNQLRN 179
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 106/144 (73%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF NT+ +I+VVDS+
Sbjct: 35 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 94
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+ A+ L+ AV L+FANKQDLP A++ A +++ L LH +++R W I
Sbjct: 95 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 154
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+DWLSN L++
Sbjct: 155 QATCATSGDGLYEGLDWLSNQLRN 178
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 176 bits (446), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 109/155 (70%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF N
Sbjct: 173 LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN 232
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVDS+D +R+ A+ L+ AV L+FANKQDLP A++ A +++ L
Sbjct: 233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 292
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH +++R W I TCA G+GL+EG+DWLSN L++
Sbjct: 293 LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 105/144 (72%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GG IRP WR YF NT+ +I+VVDS+
Sbjct: 21 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSN 80
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +R+ A+ L+ AV L+FANKQDLP A++ A +++ L LH +++R W I
Sbjct: 81 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 140
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
TCA G+GL+EG+DWLSN L++
Sbjct: 141 QATCATSGDGLYEGLDWLSNQLRN 164
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 106/155 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G RLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSIRPYWRCY+ N
Sbjct: 15 LDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSN 74
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+AVIYVVDS D DRI +K L+ A+ ++FANKQD A + + +L
Sbjct: 75 TDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLG 134
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +K+R+W IFKT A KG GL E +WL TLKS
Sbjct: 135 LPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKS 169
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 106/154 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR Y+ N
Sbjct: 25 LDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+A+I+VVDS+D DRI A+ ++ A+ L+FANK DLP A+ + V+E L
Sbjct: 85 TQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L IKNR+W +CA G+GL+EG+DWL++ LK
Sbjct: 145 LQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 103/155 (66%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GEV++TIPTIGFNVE VQY NI F VWD+GGQ IR WR Y+ N
Sbjct: 25 LDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI+VVDS+D RI A+ L A L+FANKQDLP A+ A ++E L
Sbjct: 85 TEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LH I+NR W I TCA GEGL+EG++WLSN LK+
Sbjct: 145 LHSIRNRPWFIQATCATSGEGLYEGLEWLSNCLKN 179
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 102/145 (70%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
++++GEVV+TIPTIGFNVETV++ NI F VWD+GGQ IRP WR Y+ NT+ +I+VVDS+
Sbjct: 36 KVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSN 95
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D +RI A+ LK A+ L+FANKQDLP A+ A V+E L L+ I+ R W I
Sbjct: 96 DRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFI 155
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKSG 180
TCA +G+GL+EG DWL+ L +
Sbjct: 156 QSTCATRGDGLYEGFDWLTTHLNNA 180
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 166 bits (421), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 104/153 (67%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W+ YF N
Sbjct: 25 LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQN 84
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVDS+D +RIQ L+ AV L+FANKQDLP A+ + +++ L
Sbjct: 85 TQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLG 144
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L ++NR W + TCA +G GL+EG+DWLSN L
Sbjct: 145 LQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 162 bits (409), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 105/153 (68%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP WR YF N
Sbjct: 37 LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVDS+D +R+Q + L+ AV L+FANKQD+P A+ + +++ L
Sbjct: 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLG 156
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L +++R W + TCA +G GL++G+DWLS+ L
Sbjct: 157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 109/169 (64%)
Query: 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72
P + +DN G RL +G+VV+T+PT+G N+ET+QY NI F+VWDLGGQT
Sbjct: 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQT 77
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPG 132
+RPYWRCYF +T+AVIYVVDS+D DR+ AK L+ ++ LIFANKQDLP
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
A +A ++E L + I NR W I K+ + G+GL EGMDWL L+ G
Sbjct: 138 AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVD +
Sbjct: 341 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 400
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 401 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 460
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 461 QPSCATSGDGLYEGLTWLTSNYKS 484
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVD +
Sbjct: 31 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 90
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 91 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 150
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 151 QPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+
Sbjct: 21 LDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTG 80
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVD +D DRI A+ ++ A+ LIFANKQDLP A+ + E L
Sbjct: 81 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 140
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +I++R W + +CA G+GL+EG+ WL++ KS
Sbjct: 141 LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVD +
Sbjct: 19 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 78
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 79 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 138
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 139 QPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+D G +L++G+ V+TIPT+GFNVETV Y N+KF VWD+GG IRP WR Y+
Sbjct: 11 LDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTG 70
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +I+VVD +D DRI A+ ++ A+ LIFANKQDLP A+ + E L
Sbjct: 71 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG 130
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L +I++R W + +CA G+GL+EG+ WL++ KS
Sbjct: 131 LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 97/144 (67%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GG IRP WR Y+ T+ +I+VVD +
Sbjct: 21 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCA 80
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 81 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 140
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 141 QPSCATSGDGLYEGLTWLTSNYKS 164
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 96/144 (66%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVD +
Sbjct: 19 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 78
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ + A+ LIFANKQDLP A + E L L +I++R W +
Sbjct: 79 DRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYV 138
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 139 QPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 97/144 (67%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GG IRP WR Y+ T+ +I+VVD +
Sbjct: 32 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCA 91
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 92 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 151
Query: 156 FKTCAIKGEGLFEGMDWLSNTLKS 179
+CA G+GL+EG+ WL++ KS
Sbjct: 152 QPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 96/140 (68%)
Query: 36 RLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95
+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ IRP WR Y+ T+ +I+VVD +
Sbjct: 19 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 78
Query: 96 DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155
D DRI A+ ++ A+ LIFANKQDLP A+ + E L L +I++R W +
Sbjct: 79 DRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 138
Query: 156 FKTCAIKGEGLFEGMDWLSN 175
+CA G+GL+EG+ WL++
Sbjct: 139 QPSCATSGDGLYEGLTWLTS 158
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE V TI PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T+ +I+VVDS+D
Sbjct: 40 GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99
Query: 99 RIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R+Q + L GA LIFANKQDLPGAL A+ EALEL I++ W I
Sbjct: 100 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGC 159
Query: 159 CAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 160 SAVTGEDLLPGIDWLLDDISS 180
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE V TI PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T+ +I+VVDS+D
Sbjct: 40 GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99
Query: 99 RIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R+Q + L GA LIFANKQDLPGAL A+ EALEL I++ W I
Sbjct: 100 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 159
Query: 159 CAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 160 SAVTGEDLLPGIDWLLDDISS 180
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE + TI PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T+ +I+VVDS+D
Sbjct: 38 GEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 97
Query: 99 RIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R+Q + L GA LIFANKQDLPGAL A+ E LEL I++ W I
Sbjct: 98 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGC 157
Query: 159 CAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 158 SAVTGENLLPGIDWLLDDISS 178
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE V TI PT+GFN++T+++ K +WD+GGQ S+R YWR YF +T+ +I+VVDS+D
Sbjct: 40 GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99
Query: 99 RIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R Q + L GA LIFANKQDLPGAL A+ EALEL I++ W I
Sbjct: 100 RXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGC 159
Query: 159 CAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 160 SAVTGEDLLPGIDWLLDDISS 180
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ N
Sbjct: 30 LDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 89
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI VVDS+D +RI + L+ A LIFANKQD+ + A +S+ L+
Sbjct: 90 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 149
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 150 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 183
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ N
Sbjct: 24 LDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI VVDS+D +RI + L+ A LIFANKQD+ + A +S+ L+
Sbjct: 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 144 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ N
Sbjct: 24 LDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI VVDS+D +RI + L+ A LIFANKQD+ + A +S+ L+
Sbjct: 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 144 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 136 bits (342), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 40 GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
GE V TI PT+GFN++T+++ K +WD+GG S+R YWR YF +T+ +I+VVDS+D
Sbjct: 23 GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQ 82
Query: 99 RIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158
R+Q + L GA LIFANKQDLPGAL A+ EALEL I++ W I
Sbjct: 83 RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGC 142
Query: 159 CAIKGEGLFEGMDWLSNTLKS 179
A+ GE L G+DWL + + S
Sbjct: 143 SAVTGEDLLPGIDWLLDDISS 163
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 91/153 (59%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + M EVV T PTIG NVE + NN +F +WD+GGQ S+R W Y+ N
Sbjct: 29 LDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 88
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE VI VVDS+D +RI + L+ A LIFANKQD+ + A +S+ L+
Sbjct: 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLK 148
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L IK+ QW I CA+ GEGL +G++W+ + L
Sbjct: 149 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 88/153 (57%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G + M EVV T PTIG NVE + N F +WD+GGQ S+R W Y+ N
Sbjct: 24 LDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSN 83
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
TE +I VVDS D +R+ K L+ A LIFANKQD+ G + A +S+ L
Sbjct: 84 TEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLT 143
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L IK+ W I CA+ GEGL +G++W+++ +
Sbjct: 144 LSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
P V +DN G +L ++ PT GFN+++VQ K VWD+GGQ
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGA 133
IRPYWR YF NT+ +IYV+DS+D R + L LIFANKQDL A
Sbjct: 74 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ ++E L LH I++R W I A+ GEG+ +GM+W+
Sbjct: 134 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 86/160 (53%)
Query: 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
P V +DN G +L ++ PT GFN+++VQ K VWD+GGQ
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGA 133
IRPYWR YF NT+ +IYV+DS+D R + L LIFANKQDL A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ ++E L LH I++R W I A+ GEG+ +GM+W+
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 84/149 (56%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G +L ++ PT GFN+++VQ K VWD+GGQ IRPYWR YF N
Sbjct: 12 LDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 71
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +IYV+DS+D R + L LIFANKQDL A + ++E L
Sbjct: 72 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN 131
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
LH I++R W I A+ GEG+ +GM+W+
Sbjct: 132 LHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 83/149 (55%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G +L ++ PT GFN+++VQ K VWD+GG IRPYWR YF N
Sbjct: 12 LDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFEN 71
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
T+ +IYV+DS+D R + L LIFANKQDL A + ++E L
Sbjct: 72 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLN 131
Query: 145 LHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
LH I++R W I A+ GEG+ +GM+W+
Sbjct: 132 LHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 5 PQSSVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVETVQYNNIK 62
P+ S H C LG +DN G ++L+ S +PTIGF++E + +++
Sbjct: 16 PRGSKEVHVLC---LG----LDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLS 68
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA- 121
F V+D+ GQ R W Y+ +A+I+V+DSSD R+ AK +K
Sbjct: 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128
Query: 122 -LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L FANK DL A+ VS+ L L IK++ W I + AIKGEGL EG+DWL + +++
Sbjct: 129 ILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKX 105
IPT+GFN+ + N+ ++WD+GGQ R W Y A++Y+VD++D ++I+ +K
Sbjct: 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
Query: 106 XXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165
L+G L+ NK+DLPGALD+ + E + L I++R+ + + +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 171
Query: 166 LFEGMDWLSNTLKSGGS 182
+ + WL KS S
Sbjct: 172 IDITLQWLIQHSKSRRS 188
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 70/128 (54%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKX 105
IPT+GFN+ + N+ ++WD+GGQ R W Y A++Y+VD++D ++I+ +K
Sbjct: 61 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
Query: 106 XXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165
L+G L+ NK+DLPGALD+ + E + L I++R+ + + +
Sbjct: 121 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 180
Query: 166 LFEGMDWL 173
+ + WL
Sbjct: 181 IDITLQWL 188
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKX 105
IPT+GFN+ V N+ ++WD+GGQ R W Y A++Y++D++D ++I+ ++
Sbjct: 52 IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN 111
Query: 106 XXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165
L+G L+ NK+DLP ALD+ + E + L I++R+ + + +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDN 171
Query: 166 LFEGMDWLSNTLKS 179
+ + WL KS
Sbjct: 172 IDITLQWLIQHSKS 185
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXX 106
T+G+NVET + + F V+D+GG R W Y+ N +AVI+VVDSSD R+ K
Sbjct: 49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSE 108
Query: 107 XXXXXXXXXLK------GAVA-LIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKT 158
++ G V L FANK D GA A + E L+L + + + IF +
Sbjct: 109 IQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168
Query: 159 CAIKGEGLFEGMDWLSNT 176
+KG G+ EG WL T
Sbjct: 169 NGLKGTGVHEGFSWLQET 186
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + + PT E + NIKF +DLGG R W+ YFP
Sbjct: 9 LDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPE 68
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
++++VD++D +R A+ LK +I NK D P A+ +A + AL
Sbjct: 69 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG 128
Query: 145 L------HKIK-NRQWAIFKTCAIKGEGLFEGMDWLS 174
L +I+ R +F + G E WLS
Sbjct: 129 LLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 7/160 (4%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + + PT E + NIKF +DLGG R W+ YFP
Sbjct: 31 LDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPE 90
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
++++VD++D +R A+ LK +I NK D P A+ +A + AL
Sbjct: 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG 150
Query: 145 L------HKIK-NRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L +I+ R +F + G E WLS +
Sbjct: 151 LLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + +PT+ E + + F +DLGG R W+ Y P
Sbjct: 30 LDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPA 89
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSE--- 141
++++VD +D +R+ +K + LI NK D P A+ + + E
Sbjct: 90 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG 149
Query: 142 ---------ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
++ L ++ R +F +K +G EG W++
Sbjct: 150 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 192
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + +PT+ E + + F +DLGG R W+ Y P
Sbjct: 33 LDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPA 92
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSE--- 141
++++VD +D +R+ +K + LI NK D P A+ + + E
Sbjct: 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG 152
Query: 142 ---------ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
++ L ++ R +F +K +G EG W++
Sbjct: 153 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + +PT+ E + + F +DLGG R W+ Y P
Sbjct: 24 LDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPA 83
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSE--- 141
++++VD +D +R+ +K + LI NK D P A+ + + E
Sbjct: 84 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG 143
Query: 142 ---------ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
++ L ++ R +F +K +G EG W++
Sbjct: 144 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 186
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 25 IDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84
+DN G L+ + +PT+ E + + F +DLGG R W+ Y P
Sbjct: 43 LDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPA 102
Query: 85 TEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALE 144
++++VD +D R+ +K + LI NK D A+ + + E
Sbjct: 103 INGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFG 162
Query: 145 LH------------KIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
L+ ++ R +F +K +G EG WLS
Sbjct: 163 LYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLS 204
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
+F+DN L D + Q +++ PT G + + ++ F+++D+GGQ S R W
Sbjct: 139 KYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWF 198
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQD 129
F A+I+ V SD D++ L ++ ++F NK+D
Sbjct: 199 ECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 258
Query: 130 L 130
L
Sbjct: 259 L 259
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV----------DSSDTDRIQTAKXXXXX 109
+I F + D+GGQ S R W +F + + I+V + +T R+ +
Sbjct: 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKD 219
Query: 110 XXXXXXLKGAVALIFANKQDL 130
LKGAV LIF NK DL
Sbjct: 220 IXTNEFLKGAVKLIFLNKXDL 240
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T+ N +K Q+WD GQ R Y+ +I V D +D D
Sbjct: 37 SYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDS 96
Query: 100 IQTAK 104
K
Sbjct: 97 FDNVK 101
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 33 DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
D D L+ + S I F V+ V F ++D+GGQ R W F + A+I+VV
Sbjct: 194 DQDLLRCRVLTSGIFETKFQVDKVN-----FHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
Query: 93 DSS----------DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
SS T+R+Q A L+ ++F NKQDL
Sbjct: 249 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 33 DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
D D L+ + S I F V+ V F ++D+GGQ R W F + A+I+VV
Sbjct: 180 DQDLLRCRVLTSGIFETKFQVDKVN-----FHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
Query: 93 DSS----------DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
SS T+R+Q A L+ ++F NKQDL
Sbjct: 235 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 33 DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
D D L+ + S I F V+ V F ++D+GGQ R W F + A+I+VV
Sbjct: 180 DQDLLRCRVLTSGIFETKFQVDKVN-----FHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
Query: 93 DSS----------DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
SS T+R+Q A L+ ++F NKQDL
Sbjct: 235 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 33 DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
D D L+ + S I F V+ V F ++D+GGQ R W F + A+I+VV
Sbjct: 194 DQDLLRCRVLTSGIFETKFQVDKVN-----FHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
Query: 93 DSS----------DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
SS T+R+Q A L+ ++F NKQDL
Sbjct: 249 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 33 DTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
D D L+ + S I F V+ V F ++D+GGQ R W F + A+I+VV
Sbjct: 194 DQDLLRCRVLTSGIFETKFQVDKVN-----FHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
Query: 93 DSS----------DTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
SS T+R+Q A L+ ++F NKQDL
Sbjct: 249 ASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
S I TIG F + TV+ N +K Q+WD GQ R Y+ T VI V D
Sbjct: 37 SYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 90
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 44 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 103
Query: 100 IQTAK 104
K
Sbjct: 104 FNNVK 108
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + +PT G + ++ F+++D+GGQ S R W F
Sbjct: 155 LNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 214
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 215 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT 102
PTIG F +TVQY N KF +WD GQ R Y+ + A I V D + + T
Sbjct: 36 PTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFST 95
Query: 103 AK 104
K
Sbjct: 96 LK 97
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 53 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 112
Query: 100 IQTAK 104
K
Sbjct: 113 FNNVK 117
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 27 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 86
Query: 100 IQTAK 104
K
Sbjct: 87 FNNVK 91
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 34 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 93
Query: 100 IQTAK 104
K
Sbjct: 94 FNNVK 98
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 44 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 103
Query: 100 IQTAK 104
K
Sbjct: 104 FNNVK 108
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 34 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 93
Query: 100 IQTAK 104
K
Sbjct: 94 FNNVK 98
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 36 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 95
Query: 100 IQTAK 104
K
Sbjct: 96 FNNVK 100
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 37 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 96
Query: 100 IQTAK 104
K
Sbjct: 97 YANVK 101
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 37 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 96
Query: 100 IQTAK 104
K
Sbjct: 97 YANVK 101
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120
Query: 100 IQTAK 104
K
Sbjct: 121 FNNVK 125
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F + T++ + IK Q+WD GQ R Y+ +I V D +D +
Sbjct: 26 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 85
Query: 100 IQTAK 104
K
Sbjct: 86 FNNVK 90
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 46 IPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG F ++TV+ + +K Q+WD GQ R Y+ + +I V D +D +
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 102 TAK 104
K
Sbjct: 98 GVK 100
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 46 IPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG F ++TV+ + +K Q+WD GQ R Y+ + +I V D +D +
Sbjct: 51 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 110
Query: 102 TAK 104
K
Sbjct: 111 GVK 113
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 46 IPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG F ++TV+ + +K Q+WD GQ R Y+ + +I V D +D +
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 102 TAK 104
K
Sbjct: 98 GVK 100
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D +R
Sbjct: 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD-ER 89
Query: 100 IQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEAL 143
T A L+ NK D+ + A EAL
Sbjct: 90 TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 133
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D
Sbjct: 31 SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITD 87
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D +R
Sbjct: 35 SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ER 93
Query: 100 IQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEAL 143
T A L+ NK D+ + A EAL
Sbjct: 94 TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 137
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D +R
Sbjct: 48 SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD-ER 106
Query: 100 IQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEAL 143
T A L+ NK D+ + A EAL
Sbjct: 107 TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 150
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 44 STIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96
S I TIG F ++TV N +K Q+WD GQ R Y+ +I V D +D
Sbjct: 31 SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTD 87
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 23 FFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80
+++++ + D L Q + +PT G ++ F++ D+GGQ S R W
Sbjct: 155 YYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 214
Query: 81 YFPNTEAVIY----------VVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
F N ++++ +V+S + +R++ +K + + ++F NK+DL
Sbjct: 215 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
S + T G + ++ F+++D+GGQ S R W F A+I+ V SD D +
Sbjct: 179 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 104 KXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
L ++ ++F NK+DL
Sbjct: 239 DEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 23 FFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80
+++++ + D L Q + +PT G ++ F++ D+GGQ S R W
Sbjct: 127 YYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 186
Query: 81 YFPNTEAVIY----------VVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
F N ++++ +V+S + +R++ +K + + ++F NK+DL
Sbjct: 187 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 23 FFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80
+++++ + D L Q + +PT G ++ F++ D+GGQ S R W
Sbjct: 153 YYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 212
Query: 81 YFPNTEAVIY----------VVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
F N ++++ +V+S + +R++ +K + + ++F NK+DL
Sbjct: 213 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 23 FFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80
+++++ + D L Q + +PT G ++ F++ D+GGQ S R W
Sbjct: 153 YYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 212
Query: 81 YFPNTEAVIY----------VVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
F N ++++ +V+S + +R++ +K + + ++F NK+DL
Sbjct: 213 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
S + T G + ++ F+++D+GGQ S R W F A+I+ V SD D +
Sbjct: 148 SRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 104 KXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
L ++ ++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 23 FFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80
+++++ + D L Q + +PT G ++ F++ D+GGQ S R W
Sbjct: 147 YYLNDLDRVADPSYLPTQQDVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH 206
Query: 81 YFPNTEAVIY----------VVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDL 130
F N ++++ +V+S + +R++ +K + + ++F NK+DL
Sbjct: 207 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
+ + T G + N+ F+++D+GGQ S R W F + A+I+ V S D++
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 104 KXXXXXXXXXXXLKGAVA----------LIFANKQDLPG 132
L ++ ++F NK+DL G
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFG 255
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 162 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 221
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 222 EGVTAIIFCVALSDYDLV 239
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
S+++++ + ++ + Q + + + T G + ++ F+++D+GGQ S R W
Sbjct: 129 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 188
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQD 129
F A+I+ V SD D + L ++ ++F NK+D
Sbjct: 189 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 248
Query: 130 L 130
L
Sbjct: 249 L 249
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
S+++++ + ++ + Q + + + T G + ++ F+++D+GGQ S R W
Sbjct: 129 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 188
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQD 129
F A+I+ V SD D + L ++ ++F NK+D
Sbjct: 189 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 248
Query: 130 L 130
L
Sbjct: 249 L 249
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
S+++++ + ++ + Q + + + T G + ++ F+++D+GGQ S R W
Sbjct: 122 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 181
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQD 129
F A+I+ V SD D + L ++ ++F NK+D
Sbjct: 182 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 241
Query: 130 L 130
L
Sbjct: 242 L 242
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 158 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 217
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 218 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 130 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 189
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 190 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 156 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 215
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 216 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI 100
S + T G + ++ F+ +D+GGQ S R W F A+I+ V SD D +
Sbjct: 173 SRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 229
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 127 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 186
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 187 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 132 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 191
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 192 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 131 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 190
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 191 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 155 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 214
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 215 EGVTAIIFCVALSDYDLV 232
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 126 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 185
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 186 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 129 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 188
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 189 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 125 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 184
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 185 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 127 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 186
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 187 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 155 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 214
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 215 EGVTAIIFCVALSDYDLV 232
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 124 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 183
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 184 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 22 SFFIDNFGNLCDTDRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
S+++++ + ++ + Q + + + T G + ++ F+++D+GGQ S R W
Sbjct: 152 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 211
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQD 129
F A+I+ V SD D + L ++ ++F NK+D
Sbjct: 212 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 271
Query: 130 L 130
L
Sbjct: 272 L 272
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 130 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 189
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 190 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GGQ S R W F
Sbjct: 125 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCF 184
Query: 83 PNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVA----------LIFANKQDL 130
A+I+ V SD D + L ++ ++F NK+DL
Sbjct: 185 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
G + T+ IK Q+WD GQ S R R Y+ + V D + D
Sbjct: 48 GARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 96
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT 102
TIG F +TV ++ +KF++WD GQ Y+ +A I V D ++TD
Sbjct: 34 STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR 93
Query: 103 AK 104
AK
Sbjct: 94 AK 95
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++TD AK
Sbjct: 54 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK 97
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 27 NFGNLCDTDRLQMGEVV-STIPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYW-RC 80
N G C T R G T TIG + + IK Q+WD GQ R +
Sbjct: 39 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 98
Query: 81 YFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGAL 134
Y+ N AV++V D ++ + ++ NK DL A+
Sbjct: 99 YYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI 152
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 48 TIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
TIG F ++TV+ N +K Q+WD GQ R + Y+ + A+I D
Sbjct: 58 TIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 107
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 27 NFGNLCDTDRLQMGEVV-STIPTIGFNVET----VQYNNIKFQVWDLGGQTSIRPYW-RC 80
N G C T R G T TIG + + IK Q+WD GQ R +
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89
Query: 81 YFPNTEAVIYVVDSSD 96
Y+ N AV++V D ++
Sbjct: 90 YYRNVHAVVFVYDMTN 105
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 46 IPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
I TIG F + T++ + IK Q+WD GQ R Y+ ++ V D
Sbjct: 36 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 87
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 46 IPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
I TIG F + T++ + IK Q+WD GQ R Y+ ++ V D
Sbjct: 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+G Q S R W F
Sbjct: 155 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCF 214
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 215 EGVTAIIFCVALSDYDLV 232
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+ GQ S R W F
Sbjct: 156 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCF 215
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 216 EGVTAIIFCVALSDYDLV 233
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
PTIG F + V N +KF++WD GQ Y+ N +A + V D
Sbjct: 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYD 84
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
G + + IK Q+WD GQ S R R Y+ + V D
Sbjct: 59 GARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 102
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 27 NFGNLCDTDRLQMG---EVVSTIPTIGFNVET--VQYNNIKFQVWDLGGQTSIRPYWRCY 81
+ G C R + G E + + F ++T +Q +K Q+WD GQ R + Y
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98
Query: 82 FPNTEAVIYVVD 93
+ + I D
Sbjct: 99 YRSANGAILAYD 110
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 31 LCDTDRL--------QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
L D DR+ Q + + + T G + ++ F+++D+GG S R W F
Sbjct: 155 LNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCF 214
Query: 83 PNTEAVIYVVDSSDTDRI 100
A+I+ V SD D +
Sbjct: 215 EGVTAIIFCVALSDYDLV 232
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 41 EVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
E+ +TI + F V+T+ N K +WD GQ R Y+ + VI V D + D
Sbjct: 43 ELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD 101
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 41 EVVSTIPTIGFNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
E + + F ++TV+ I+ Q+WD GQ Y+ + + +I V D
Sbjct: 53 EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 107
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 29 GNLCDTDRLQMGEVVST--IPTIGFN----VETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82
G C R + G ++ I T+G + V V +K Q+WD GQ R Y+
Sbjct: 22 GKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYY 81
Query: 83 PNTEAVIYVVDSSDT---DRIQ 101
+ A++ + D ++ D IQ
Sbjct: 82 RDAHALLLLYDVTNKASFDNIQ 103
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 48 TIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
TIG F +TV ++ +KF++WD G Y+ +A I V D ++TD A
Sbjct: 37 TIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARA 96
Query: 104 K 104
K
Sbjct: 97 K 97
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
G V V +K Q+WD GQ R R Y+ + V D
Sbjct: 63 GSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 106
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 34 TDRLQMGEVVSTIPT-IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92
T++ M + TI G + V IK Q+WD GQ R R Y+ + V
Sbjct: 36 TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 95
Query: 93 D 93
D
Sbjct: 96 D 96
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT 102
PTIG F +TV N KF +WD GQ Y+ + A + V D + D T
Sbjct: 54 PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT 113
Query: 103 AK 104
K
Sbjct: 114 LK 115
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 99
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 43 VSTIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
VST+ I F V+T+ N+ IK Q+WD GQ R Y+ I + D
Sbjct: 35 VSTVG-IDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 86
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 50 GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
G + V IK Q+WD GQ R R Y+ + V D
Sbjct: 68 GTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYD 111
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 48 TIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
TIG F +T+ N+ +KF++WD GQ Y+ A I V D ++ + A
Sbjct: 44 TIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA 103
Query: 104 K 104
K
Sbjct: 104 K 104
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 57 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAK 100
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 46 IPTIGFNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I T+G + T + N + +WD GQ Y+ ++ I V D +D D Q
Sbjct: 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 102 TAK 104
K
Sbjct: 96 KVK 98
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD GQ Y+ +A I V D ++ + AK
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAK 99
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
+K Q+WD GQ R R Y+ + V D
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 91
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
+K Q+WD GQ R R Y+ + V D
Sbjct: 60 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 92
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
NIKF +WD GQ Y+ I V D S+++ + AK
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK 136
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+PT+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 48 TIGFNVET----VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA 103
TIG T ++ IK Q+WD GQ R Y+ + V D S + +
Sbjct: 45 TIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC 104
Query: 104 KXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163
AV LI NK DL A A +E + +N Q +T A+
Sbjct: 105 NHWLSELRENADDNVAVGLI-GNKSDL--AHLRAVPTEESKTFAQEN-QLLFTETSALNS 160
Query: 164 EGLFEGMDWLSNTL 177
E + + + L NT+
Sbjct: 161 ENVDKAFEELINTI 174
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+PT+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 41 EVVSTIPTIGFNVETVQYNNIK--FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
E +S + F ++T+ + + Q+WD GQ R + YF + V+ + D
Sbjct: 55 ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYD 109
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 61 IKFQVWDLGGQTS-IRPY--WRCYFPNTEAVIYVVDSSD 96
+ FQ+WD GQ P + F T A+IYV+D+ D
Sbjct: 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related Gtp
Binding D In Complex With Gmppnp
Length = 181
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 61 IKFQVWDLGGQTS-IRPY--WRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLK 117
+ FQ+WD GQ P + F T A+I+V+DS D A+
Sbjct: 53 VNFQIWDFPGQIDFFDPTFDYEXIFRGTGALIFVIDSQDDYXEALARLHLTVTRAYKVNT 112
Query: 118 GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154
+F +K D G DD + ++H+ N A
Sbjct: 113 DINFEVFIHKVD--GLSDDHKIETQRDIHQRANDDLA 147
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 43 VSTIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
VST+ I F V+TV ++ IK Q+WD GQ R Y+ + + D ++ +
Sbjct: 52 VSTVG-IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE 108
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+ +WD GQ Y+ ++ I V D +D D Q K
Sbjct: 69 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 112
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 43 VSTIPTIGFNVETV--QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
VST+ I F V+TV +K Q+WD GQ R Y+ I + D ++ +
Sbjct: 53 VSTVG-IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE 109
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 47 PTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
TIG F +++Q N IK Q+WD GQ R Y+ + V D
Sbjct: 38 STIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 89
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+ +WD GQ Y+ ++ I V D +D D Q K
Sbjct: 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK 98
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I+ Q+WD GQ R Y ++ A + V D ++ + Q
Sbjct: 53 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 95
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96
N+ Q+WD+GGQT Y + V+ V D ++
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN 91
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK 104
+KF++WD G Y+ +A I V D ++ + AK
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 97
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI-QTAK 104
++ Q+WD GQ R Y ++ + V D ++T+ QT+K
Sbjct: 63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 3/113 (2%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+ Q+WD GQ R +F + + + D + + +
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
++ NK DLP D V+E F+T A G+ + + ++ L
Sbjct: 144 IVLIGNKADLP---DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 22 SFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIK--------FQVWDLGGQTS 73
+ ++N L D + + E V V +Q++ + ++++D+GGQ +
Sbjct: 136 KYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRN 195
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDR 99
R W F AVI+ S+ D+
Sbjct: 196 ERRKWIHLFEGVTAVIFCAAISEYDQ 221
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 47 PTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
TIG F ++Q + IK Q+WD GQ R Y+ + V D
Sbjct: 60 STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 110
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 47 PTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
TIG F ++Q + IK Q+WD GQ R Y+ + V D
Sbjct: 51 STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 101
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
+K Q+WD G R R Y+ + V D
Sbjct: 57 VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYD 89
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 47 PTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98
TIG F +Q N+ ++ +WD GQ + Y+ +A + V ++D +
Sbjct: 36 KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
++ Q+WD GQ R Y ++ A I V D
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYD 82
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETV 56
LG I++FG L T Q E+V T PT+ ++ TV
Sbjct: 225 LGAVSRINSFGYLYGTPGFQAPEIVRTGPTVATDIYTV 262
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETV----QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG V + + IKF VWD G Y+ N + I + D T RI
Sbjct: 35 IATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV--TSRIT 92
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ + ++ + H+ KN Q+
Sbjct: 93 YKNVPNWHRDLVRVCENIPIVLCGNKVDVK---ERKVKAKTITFHRKKNLQY 141
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETV----QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG V + + IKF VWD G Y+ N + I + D T RI
Sbjct: 34 IATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV--TSRIT 91
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ + ++ + H+ KN Q+
Sbjct: 92 YKNVPNWHRDLVRVCENIPIVLCGNKVDVK---ERKVKAKTITFHRKKNLQY 140
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETV----QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
I TIG V + + IKF VWD G Y+ N + I + D T RI
Sbjct: 42 IATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV--TSRIT 99
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ + ++ + H+ KN Q+
Sbjct: 100 YKNVPNWHRDLVRVCENIPIVLCGNKVDVK---ERKVKAKTITFHRKKNLQY 148
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 102
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 103 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 151
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 33 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 90
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 91 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 139
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 48 TIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93
TIG F ++Q + IK Q+WD GQ R Y+ + V D
Sbjct: 37 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 102
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 103 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 151
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 48 TIGFNVETVQYNNIK------------FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94
T G NV T Q NIK F WD GGQ + + + + + ++DS
Sbjct: 73 THGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 46 IPTIGFNVETVQYNN----IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ 101
+ T+G V + ++ IKF VWD GQ Y+ + I + D T R+
Sbjct: 40 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDV--TSRVT 97
Query: 102 TAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153
+ ++ NK D+ D ++++ H+ KN Q+
Sbjct: 98 YKNVPNWHRDLVRVCENIPIVLCGNKVDIK---DRKVKAKSIVFHRKKNLQY 146
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXL 116
Q N IKF VWD GQ Y+ I D T RI T + +
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDV--TSRI-TCQNLARWVKEFQAV 113
Query: 117 KGAVA--LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160
G A ++ ANK D+ + +S+ L + +K + + F+ A
Sbjct: 114 VGNEAPIVVCANKIDIK---NRQKISKKLVMEVLKGKNYEYFEISA 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,071,787
Number of Sequences: 62578
Number of extensions: 175153
Number of successful extensions: 534
Number of sequences better than 100.0: 190
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 190
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)