Query 030122
Match_columns 182
No_of_seqs 132 out of 1726
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5E-39 1.1E-43 216.4 12.9 162 15-181 7-175 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.9E-38 1.3E-42 210.7 15.0 168 10-180 15-187 (221)
3 PLN00223 ADP-ribosylation fact 100.0 4.5E-37 9.8E-42 213.7 19.4 166 15-180 15-180 (181)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 1.1E-37 2.4E-42 209.1 13.8 159 15-179 3-168 (200)
5 smart00177 ARF ARF-like small 100.0 1.7E-36 3.7E-41 209.9 19.7 164 15-178 11-174 (175)
6 cd04149 Arf6 Arf6 subfamily. 100.0 2.1E-36 4.5E-41 208.1 18.6 160 16-175 8-167 (168)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.6E-36 7.7E-41 205.3 18.5 158 18-175 1-158 (159)
8 PF00025 Arf: ADP-ribosylation 100.0 1.1E-35 2.4E-40 205.6 20.0 163 15-177 12-175 (175)
9 PTZ00133 ADP-ribosylation fact 100.0 7.9E-36 1.7E-40 207.7 19.4 166 15-180 15-180 (182)
10 KOG0073 GTP-binding ADP-ribosy 100.0 9.9E-36 2.2E-40 194.5 16.8 166 14-179 13-179 (185)
11 KOG0078 GTP-binding protein SE 100.0 4.3E-36 9.4E-41 204.9 13.9 165 12-180 7-176 (207)
12 KOG0070 GTP-binding ADP-ribosy 100.0 1.6E-35 3.6E-40 198.1 16.0 169 12-180 12-180 (181)
13 cd04158 ARD1 ARD1 subfamily. 100.0 8.6E-35 1.9E-39 200.3 19.7 162 19-180 1-163 (169)
14 KOG0394 Ras-related GTPase [Ge 100.0 3.4E-36 7.3E-41 200.3 11.6 166 14-180 6-180 (210)
15 cd04154 Arl2 Arl2 subfamily. 100.0 8.5E-35 1.8E-39 201.1 18.7 163 13-175 10-172 (173)
16 cd04120 Rab12 Rab12 subfamily. 100.0 3E-35 6.4E-40 207.1 16.3 158 18-179 1-164 (202)
17 cd04121 Rab40 Rab40 subfamily. 100.0 2.7E-35 5.9E-40 205.5 15.4 158 16-180 5-169 (189)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5E-35 1.1E-39 202.0 14.8 162 17-181 2-167 (172)
19 KOG0080 GTPase Rab18, small G 100.0 2.4E-35 5.1E-40 192.2 12.0 166 12-180 6-176 (209)
20 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.3E-34 9.2E-39 197.7 18.7 160 16-175 14-173 (174)
21 cd04133 Rop_like Rop subfamily 100.0 9.2E-35 2E-39 200.8 14.9 160 18-179 2-174 (176)
22 cd04151 Arl1 Arl1 subfamily. 100.0 6.4E-34 1.4E-38 193.9 18.3 157 19-175 1-157 (158)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.7E-35 1.9E-39 202.0 14.2 162 16-179 4-181 (182)
24 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.6E-34 1.2E-38 195.9 17.8 157 19-175 1-166 (167)
25 cd04157 Arl6 Arl6 subfamily. 100.0 1E-33 2.2E-38 193.5 17.9 157 19-175 1-161 (162)
26 KOG0098 GTPase Rab2, small G p 100.0 7.4E-35 1.6E-39 194.3 11.6 160 16-179 5-169 (216)
27 cd01875 RhoG RhoG subfamily. 100.0 2.2E-34 4.7E-39 201.9 14.6 161 17-179 3-178 (191)
28 PLN03071 GTP-binding nuclear p 100.0 8.6E-34 1.9E-38 202.6 17.7 158 15-180 11-174 (219)
29 KOG0071 GTP-binding ADP-ribosy 100.0 9.3E-34 2E-38 180.8 15.8 166 14-179 14-179 (180)
30 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.4E-33 5.2E-38 195.4 18.7 164 16-179 2-171 (183)
31 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6E-34 1.3E-38 203.7 15.4 166 13-180 9-190 (232)
32 cd04131 Rnd Rnd subfamily. Th 100.0 3.2E-34 6.9E-39 198.8 13.5 160 17-178 1-176 (178)
33 cd04126 Rab20 Rab20 subfamily. 100.0 7.2E-34 1.6E-38 202.2 15.3 159 18-178 1-190 (220)
34 cd04122 Rab14 Rab14 subfamily. 100.0 8.7E-34 1.9E-38 194.8 15.1 156 18-179 3-165 (166)
35 smart00178 SAR Sar1p-like memb 100.0 3.8E-33 8.1E-38 194.6 18.4 162 15-176 15-183 (184)
36 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.8E-33 8.1E-38 191.2 17.6 154 20-175 2-163 (164)
37 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.1E-33 1.1E-37 196.5 18.5 159 18-180 1-170 (201)
38 cd04136 Rap_like Rap-like subf 100.0 2.7E-33 5.9E-38 191.6 16.2 156 18-177 2-162 (163)
39 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-33 3.2E-38 196.0 15.1 160 16-180 3-179 (180)
40 KOG0095 GTPase Rab30, small G 100.0 2.8E-34 6E-39 185.3 10.4 159 16-178 6-169 (213)
41 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-33 2.9E-38 193.5 14.4 158 17-178 1-163 (164)
42 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.8E-33 1.5E-37 189.1 17.8 157 19-175 1-159 (160)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-33 3.2E-38 195.1 14.7 158 18-177 2-174 (175)
44 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.2E-32 2.5E-37 187.6 18.8 157 19-175 1-157 (158)
45 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4E-33 8.7E-38 193.9 16.5 160 18-180 1-168 (182)
46 KOG0093 GTPase Rab3, small G p 100.0 2.4E-33 5.2E-38 180.3 14.0 158 16-182 20-187 (193)
47 cd00877 Ran Ran (Ras-related n 100.0 7.1E-33 1.5E-37 190.2 17.3 156 18-180 1-161 (166)
48 cd00879 Sar1 Sar1 subfamily. 100.0 1.3E-32 2.9E-37 192.8 18.3 161 16-176 18-189 (190)
49 PTZ00369 Ras-like protein; Pro 100.0 4.3E-33 9.3E-38 195.1 15.7 159 16-179 4-168 (189)
50 cd04119 RJL RJL (RabJ-Like) su 100.0 3.3E-33 7.2E-38 191.8 14.5 156 18-178 1-167 (168)
51 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.9E-33 1.3E-37 189.5 14.9 155 18-177 2-161 (162)
52 cd04134 Rho3 Rho3 subfamily. 100.0 4.6E-33 9.9E-38 195.0 14.4 160 19-180 2-176 (189)
53 cd04176 Rap2 Rap2 subgroup. T 100.0 5.7E-33 1.2E-37 190.1 14.4 157 17-177 1-162 (163)
54 cd04117 Rab15 Rab15 subfamily. 100.0 6.3E-33 1.4E-37 189.6 14.5 154 18-176 1-160 (161)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7.4E-33 1.6E-37 190.8 14.8 157 19-179 2-166 (170)
56 cd04124 RabL2 RabL2 subfamily. 100.0 1.8E-32 3.9E-37 187.4 16.1 156 18-181 1-161 (161)
57 cd04144 Ras2 Ras2 subfamily. 100.0 4.9E-33 1.1E-37 195.0 13.6 158 19-180 1-165 (190)
58 cd04110 Rab35 Rab35 subfamily. 100.0 1.4E-32 3.1E-37 193.9 15.8 157 16-179 5-168 (199)
59 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-32 2.4E-37 189.5 14.8 157 17-179 3-166 (167)
60 KOG0086 GTPase Rab4, small G p 100.0 4.7E-33 1E-37 180.2 11.9 162 14-179 6-172 (214)
61 smart00173 RAS Ras subfamily o 100.0 1.3E-32 2.8E-37 188.5 14.9 158 18-179 1-163 (164)
62 cd01871 Rac1_like Rac1-like su 100.0 7.1E-33 1.5E-37 191.5 13.4 158 17-176 1-173 (174)
63 cd04111 Rab39 Rab39 subfamily. 100.0 1.5E-32 3.3E-37 195.2 15.4 159 17-179 2-167 (211)
64 cd01865 Rab3 Rab3 subfamily. 100.0 1.7E-32 3.6E-37 188.3 15.0 156 18-179 2-164 (165)
65 cd04109 Rab28 Rab28 subfamily. 100.0 1.7E-32 3.7E-37 195.7 15.5 158 18-179 1-167 (215)
66 cd04155 Arl3 Arl3 subfamily. 100.0 6.8E-32 1.5E-36 186.5 18.0 163 13-175 10-172 (173)
67 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.5E-32 3.3E-37 195.6 14.9 161 18-180 2-178 (222)
68 cd04160 Arfrp1 Arfrp1 subfamil 100.0 7.4E-32 1.6E-36 185.2 17.6 157 19-175 1-166 (167)
69 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.9E-33 1.1E-37 189.3 11.4 163 13-179 10-177 (222)
70 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.5E-32 5.4E-37 187.5 14.9 156 18-179 3-165 (166)
71 cd04140 ARHI_like ARHI subfami 100.0 3.4E-32 7.4E-37 186.7 14.9 154 18-175 2-162 (165)
72 cd04103 Centaurin_gamma Centau 100.0 2.7E-32 5.9E-37 185.7 13.6 153 18-176 1-157 (158)
73 KOG0075 GTP-binding ADP-ribosy 100.0 3.4E-32 7.4E-37 174.9 13.1 166 16-181 19-185 (186)
74 smart00176 RAN Ran (Ras-relate 100.0 7.5E-32 1.6E-36 189.6 16.0 150 23-180 1-156 (200)
75 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.1E-32 1.3E-36 185.0 15.0 157 17-177 2-163 (164)
76 cd04159 Arl10_like Arl10-like 100.0 5E-31 1.1E-35 179.1 18.4 156 20-175 2-158 (159)
77 KOG0079 GTP-binding protein H- 100.0 3.9E-33 8.4E-38 179.6 7.3 157 18-179 9-170 (198)
78 cd04116 Rab9 Rab9 subfamily. 100.0 2.9E-31 6.2E-36 182.9 16.9 158 16-177 4-170 (170)
79 PLN03110 Rab GTPase; Provision 100.0 1.4E-31 3E-36 191.0 15.6 161 14-179 9-175 (216)
80 cd04113 Rab4 Rab4 subfamily. 100.0 6.5E-32 1.4E-36 184.5 13.3 154 18-177 1-161 (161)
81 PLN03118 Rab family protein; P 100.0 2.5E-31 5.4E-36 189.2 16.7 166 10-180 7-179 (211)
82 cd01866 Rab2 Rab2 subfamily. 100.0 1.7E-31 3.7E-36 183.7 15.0 157 17-179 4-167 (168)
83 cd04132 Rho4_like Rho4-like su 100.0 9.2E-32 2E-36 188.1 13.9 156 18-180 1-169 (187)
84 cd04125 RabA_like RabA-like su 100.0 1.5E-31 3.2E-36 187.2 14.7 157 18-179 1-163 (188)
85 cd04143 Rhes_like Rhes_like su 100.0 8.2E-31 1.8E-35 189.9 19.0 156 18-177 1-170 (247)
86 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.2E-31 2.6E-36 184.8 13.8 158 17-178 2-169 (170)
87 cd04118 Rab24 Rab24 subfamily. 100.0 2.1E-31 4.5E-36 187.2 15.0 160 18-179 1-167 (193)
88 cd01868 Rab11_like Rab11-like. 100.0 2.1E-31 4.5E-36 182.7 14.5 155 17-177 3-164 (165)
89 PF00071 Ras: Ras family; Int 100.0 5.1E-32 1.1E-36 185.1 11.4 154 19-178 1-161 (162)
90 cd04177 RSR1 RSR1 subgroup. R 100.0 3.3E-31 7.2E-36 182.3 15.2 158 17-178 1-164 (168)
91 cd01864 Rab19 Rab19 subfamily. 100.0 6.6E-31 1.4E-35 180.3 16.6 155 17-176 3-164 (165)
92 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-31 4.8E-36 186.8 14.5 157 18-180 1-165 (191)
93 cd04106 Rab23_lke Rab23-like s 100.0 1.4E-31 3E-36 182.9 13.1 152 18-176 1-161 (162)
94 smart00174 RHO Rho (Ras homolo 100.0 2.7E-31 5.9E-36 183.6 14.4 158 20-179 1-173 (174)
95 cd04142 RRP22 RRP22 subfamily. 100.0 1.1E-30 2.5E-35 183.7 17.2 160 18-180 1-176 (198)
96 smart00175 RAB Rab subfamily o 100.0 4E-31 8.7E-36 180.9 14.1 157 18-180 1-164 (164)
97 cd01863 Rab18 Rab18 subfamily. 100.0 1.9E-30 4.1E-35 177.2 16.6 154 18-176 1-160 (161)
98 cd01892 Miro2 Miro2 subfamily. 100.0 5.7E-30 1.2E-34 176.3 18.4 154 16-179 3-167 (169)
99 cd04101 RabL4 RabL4 (Rab-like4 100.0 7.3E-31 1.6E-35 179.8 13.7 154 18-177 1-163 (164)
100 cd01860 Rab5_related Rab5-rela 100.0 4.9E-30 1.1E-34 175.5 17.8 155 17-177 1-162 (163)
101 cd01861 Rab6 Rab6 subfamily. 100.0 9.2E-31 2E-35 178.7 14.0 154 18-176 1-160 (161)
102 cd01862 Rab7 Rab7 subfamily. 100.0 5.9E-30 1.3E-34 176.5 18.1 159 18-180 1-169 (172)
103 PLN03108 Rab family protein; P 100.0 1.6E-30 3.4E-35 184.9 15.2 157 17-179 6-169 (210)
104 KOG0072 GTP-binding ADP-ribosy 100.0 3E-31 6.5E-36 170.0 9.7 167 15-181 16-182 (182)
105 cd04135 Tc10 TC10 subfamily. 100.0 1.7E-30 3.6E-35 179.7 14.0 158 18-177 1-173 (174)
106 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.3E-30 2.8E-35 180.2 12.9 156 18-175 1-171 (173)
107 KOG0091 GTPase Rab39, small G 100.0 4.6E-31 9.9E-36 172.7 9.9 160 16-178 7-173 (213)
108 cd04147 Ras_dva Ras-dva subfam 100.0 8.2E-30 1.8E-34 179.7 16.7 156 19-178 1-163 (198)
109 cd04123 Rab21 Rab21 subfamily. 100.0 3.5E-30 7.6E-35 175.8 14.2 154 18-177 1-161 (162)
110 cd01873 RhoBTB RhoBTB subfamil 100.0 2.7E-30 5.9E-35 181.3 13.4 156 17-176 2-194 (195)
111 cd04146 RERG_RasL11_like RERG/ 100.0 2.5E-30 5.3E-35 177.4 12.7 155 19-178 1-164 (165)
112 cd04139 RalA_RalB RalA/RalB su 100.0 2.6E-29 5.6E-34 171.9 17.4 157 18-179 1-163 (164)
113 cd01893 Miro1 Miro1 subfamily. 100.0 1.6E-29 3.4E-34 173.7 16.0 158 18-179 1-165 (166)
114 cd04148 RGK RGK subfamily. Th 100.0 7.4E-30 1.6E-34 182.6 14.9 155 18-178 1-163 (221)
115 KOG0074 GTP-binding ADP-ribosy 100.0 4.3E-30 9.4E-35 164.3 12.0 166 12-177 12-178 (185)
116 cd01870 RhoA_like RhoA-like su 100.0 2.8E-29 6E-34 173.7 16.8 158 18-177 2-174 (175)
117 KOG0081 GTPase Rab27, small G 100.0 4.8E-32 1E-36 176.6 2.6 161 16-179 8-182 (219)
118 PTZ00132 GTP-binding nuclear p 100.0 8.9E-29 1.9E-33 176.6 18.3 161 13-180 5-170 (215)
119 KOG0088 GTPase Rab21, small G 100.0 1.5E-30 3.1E-35 169.6 7.9 165 12-180 8-177 (218)
120 cd00154 Rab Rab family. Rab G 100.0 5.3E-29 1.2E-33 169.0 15.8 151 18-174 1-158 (159)
121 cd04114 Rab30 Rab30 subfamily. 100.0 6.6E-29 1.4E-33 170.9 14.7 157 16-177 6-168 (169)
122 cd00157 Rho Rho (Ras homology) 100.0 4.7E-29 1E-33 171.8 12.8 156 18-175 1-170 (171)
123 cd04137 RheB Rheb (Ras Homolog 100.0 2.6E-28 5.5E-33 169.7 16.6 158 18-180 2-165 (180)
124 cd00876 Ras Ras family. The R 100.0 6E-29 1.3E-33 169.3 13.0 154 19-177 1-160 (160)
125 cd04102 RabL3 RabL3 (Rab-like3 100.0 5E-28 1.1E-32 170.2 15.8 116 18-133 1-144 (202)
126 KOG0395 Ras-related GTPase [Ge 100.0 1.7E-28 3.7E-33 171.4 13.3 161 16-179 2-166 (196)
127 cd04129 Rho2 Rho2 subfamily. 100.0 2.5E-28 5.3E-33 170.8 14.0 160 18-179 2-174 (187)
128 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.2E-31 1.8E-35 166.2 1.2 150 22-180 2-162 (192)
129 KOG0097 GTPase Rab14, small G 100.0 3.7E-28 8.1E-33 155.8 11.3 162 13-179 7-174 (215)
130 KOG0076 GTP-binding ADP-ribosy 100.0 2.9E-28 6.2E-33 161.1 8.4 165 16-180 16-189 (197)
131 cd01897 NOG NOG1 is a nucleola 100.0 2.2E-26 4.9E-31 158.1 16.9 152 19-177 2-167 (168)
132 cd01898 Obg Obg subfamily. Th 99.9 1.8E-26 3.8E-31 158.9 14.8 155 19-176 2-169 (170)
133 PLN00023 GTP-binding protein; 99.9 3.1E-26 6.6E-31 168.8 14.5 123 11-133 15-166 (334)
134 KOG0393 Ras-related small GTPa 99.9 3.4E-26 7.4E-31 157.0 10.8 162 16-179 3-180 (198)
135 cd04171 SelB SelB subfamily. 99.9 1.1E-25 2.5E-30 153.8 13.4 148 19-175 2-163 (164)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 3.8E-25 8.2E-30 166.1 16.6 159 19-181 160-331 (335)
137 cd01890 LepA LepA subfamily. 99.9 7.6E-25 1.7E-29 152.0 16.2 149 19-177 2-176 (179)
138 cd01878 HflX HflX subfamily. 99.9 2.5E-25 5.5E-30 157.6 13.5 151 17-177 41-204 (204)
139 TIGR00231 small_GTP small GTP- 99.9 8.8E-25 1.9E-29 148.0 15.5 152 18-174 2-160 (161)
140 PRK04213 GTP-binding protein; 99.9 6.1E-26 1.3E-30 160.4 9.6 160 14-180 6-194 (201)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-24 2.3E-29 149.6 14.9 154 19-178 2-166 (168)
142 COG1100 GTPase SAR1 and relate 99.9 2.3E-24 4.9E-29 154.2 15.3 161 18-179 6-186 (219)
143 PTZ00099 rab6; Provisional 99.9 8E-25 1.7E-29 151.2 12.2 134 41-180 4-144 (176)
144 KOG4252 GTP-binding protein [S 99.9 1.5E-26 3.2E-31 153.9 2.5 156 14-179 17-182 (246)
145 PRK03003 GTP-binding protein D 99.9 6.2E-24 1.3E-28 167.2 16.8 160 16-180 210-384 (472)
146 cd01881 Obg_like The Obg-like 99.9 2.1E-24 4.5E-29 149.2 12.4 152 22-176 1-175 (176)
147 TIGR02729 Obg_CgtA Obg family 99.9 7.9E-24 1.7E-28 158.9 16.1 155 19-177 159-328 (329)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.2E-23 4.7E-28 141.4 16.2 143 18-177 2-156 (157)
149 cd00882 Ras_like_GTPase Ras-li 99.9 3.7E-24 8.1E-29 143.7 12.3 151 22-175 1-157 (157)
150 TIGR02528 EutP ethanolamine ut 99.9 2E-24 4.4E-29 144.5 10.6 134 19-174 2-141 (142)
151 cd04105 SR_beta Signal recogni 99.9 1E-23 2.2E-28 149.0 14.1 157 19-175 2-202 (203)
152 cd00881 GTP_translation_factor 99.9 4.1E-23 8.8E-28 144.2 16.7 155 19-178 1-187 (189)
153 PRK15494 era GTPase Era; Provi 99.9 2.9E-23 6.3E-28 156.9 16.9 155 16-179 51-217 (339)
154 TIGR00436 era GTP-binding prot 99.9 2.9E-23 6.2E-28 152.8 16.4 152 19-179 2-165 (270)
155 TIGR03594 GTPase_EngA ribosome 99.9 3.5E-23 7.5E-28 161.7 17.5 160 15-179 170-345 (429)
156 cd01891 TypA_BipA TypA (tyrosi 99.9 2.1E-23 4.6E-28 146.6 14.7 146 19-169 4-173 (194)
157 cd01879 FeoB Ferrous iron tran 99.9 4.3E-23 9.3E-28 140.2 15.6 146 22-178 1-157 (158)
158 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-23 3.8E-28 158.3 14.9 149 17-176 189-350 (351)
159 PRK03003 GTP-binding protein D 99.9 3.7E-23 8.1E-28 162.7 16.3 151 17-179 38-200 (472)
160 cd01889 SelB_euk SelB subfamil 99.9 2.9E-23 6.3E-28 145.7 13.9 156 18-178 1-186 (192)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.9E-23 1.7E-27 158.9 17.3 148 16-179 202-361 (442)
162 cd01894 EngA1 EngA1 subfamily. 99.9 4.5E-23 9.8E-28 139.9 14.0 145 21-177 1-157 (157)
163 cd01895 EngA2 EngA2 subfamily. 99.9 2.1E-22 4.4E-27 138.6 17.1 155 17-176 2-173 (174)
164 PRK05291 trmE tRNA modificatio 99.9 6E-23 1.3E-27 160.2 15.8 146 16-179 214-371 (449)
165 PF02421 FeoB_N: Ferrous iron 99.9 3.9E-23 8.5E-28 138.5 12.0 141 18-173 1-156 (156)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 8.1E-23 1.8E-27 159.2 15.4 157 19-180 161-342 (500)
167 PRK12297 obgE GTPase CgtA; Rev 99.9 6.7E-22 1.5E-26 152.2 19.0 153 19-179 160-328 (424)
168 PF08477 Miro: Miro-like prote 99.9 2E-23 4.3E-28 135.7 7.9 109 19-129 1-119 (119)
169 PRK11058 GTPase HflX; Provisio 99.9 7.5E-22 1.6E-26 152.7 17.7 152 18-178 198-362 (426)
170 PRK00454 engB GTP-binding prot 99.9 2.6E-22 5.6E-27 141.2 13.3 162 11-179 18-195 (196)
171 TIGR00487 IF-2 translation ini 99.9 1.5E-21 3.1E-26 156.1 17.6 156 14-175 84-247 (587)
172 COG2229 Predicted GTPase [Gene 99.9 1.7E-21 3.6E-26 130.7 15.0 157 13-176 6-176 (187)
173 PRK15467 ethanolamine utilizat 99.9 3.5E-22 7.5E-27 136.0 11.6 142 19-179 3-148 (158)
174 KOG0077 Vesicle coat complex C 99.9 8.8E-23 1.9E-27 134.2 8.1 162 16-177 19-192 (193)
175 cd04163 Era Era subfamily. Er 99.9 1.7E-21 3.8E-26 133.0 15.0 152 17-176 3-167 (168)
176 PRK09518 bifunctional cytidyla 99.9 1.2E-21 2.5E-26 160.8 16.5 159 16-179 449-622 (712)
177 TIGR01393 lepA GTP-binding pro 99.9 1.6E-21 3.5E-26 156.4 16.1 150 19-178 5-180 (595)
178 PRK00093 GTP-binding protein D 99.9 2.3E-21 5.1E-26 151.7 16.7 160 15-179 171-345 (435)
179 cd01888 eIF2_gamma eIF2-gamma 99.9 5.8E-22 1.3E-26 140.2 12.0 154 18-178 1-199 (203)
180 cd00880 Era_like Era (E. coli 99.9 1.3E-21 2.9E-26 132.4 13.3 151 22-177 1-163 (163)
181 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 5.3E-22 1.2E-26 133.3 11.0 157 16-179 9-170 (216)
182 KOG1673 Ras GTPases [General f 99.9 4.2E-22 9E-27 129.7 9.9 165 13-179 16-187 (205)
183 TIGR03598 GTPase_YsxC ribosome 99.9 5.3E-22 1.1E-26 137.9 11.1 151 8-167 9-179 (179)
184 PRK05306 infB translation init 99.9 3E-21 6.5E-26 157.8 17.0 157 14-176 287-450 (787)
185 PRK00093 GTP-binding protein D 99.9 3.7E-21 8E-26 150.6 16.4 145 18-176 2-160 (435)
186 TIGR03594 GTPase_EngA ribosome 99.9 3.5E-21 7.7E-26 150.4 16.0 147 19-179 1-161 (429)
187 PRK12298 obgE GTPase CgtA; Rev 99.9 5E-21 1.1E-25 146.5 16.3 159 19-179 161-334 (390)
188 PF00009 GTP_EFTU: Elongation 99.9 5.9E-22 1.3E-26 138.6 10.3 158 16-178 2-187 (188)
189 TIGR00475 selB selenocysteine- 99.9 1.6E-21 3.5E-26 156.2 13.3 153 18-179 1-167 (581)
190 PRK00089 era GTPase Era; Revie 99.9 9.6E-21 2.1E-25 141.0 16.4 155 17-179 5-172 (292)
191 KOG3883 Ras family small GTPas 99.9 9.1E-21 2E-25 123.2 13.3 162 16-180 8-177 (198)
192 CHL00189 infB translation init 99.9 5.4E-21 1.2E-25 155.1 15.0 157 15-177 242-409 (742)
193 cd01896 DRG The developmentall 99.9 2E-20 4.3E-25 134.7 16.2 150 19-178 2-226 (233)
194 PRK09518 bifunctional cytidyla 99.9 1E-20 2.2E-25 155.3 16.0 153 15-179 273-437 (712)
195 PRK05433 GTP-binding protein L 99.9 3.6E-20 7.8E-25 148.8 16.5 150 19-178 9-184 (600)
196 cd04168 TetM_like Tet(M)-like 99.9 7.3E-20 1.6E-24 132.0 16.2 154 19-177 1-234 (237)
197 PRK12317 elongation factor 1-a 99.9 2.5E-20 5.5E-25 145.3 14.6 154 15-170 4-197 (425)
198 TIGR00437 feoB ferrous iron tr 99.8 3.3E-20 7.2E-25 148.9 14.2 143 24-177 1-154 (591)
199 TIGR00483 EF-1_alpha translati 99.8 3.2E-20 6.9E-25 144.7 13.2 154 15-170 5-199 (426)
200 TIGR00491 aIF-2 translation in 99.8 4.8E-20 1E-24 147.2 14.2 152 17-176 4-214 (590)
201 PRK09554 feoB ferrous iron tra 99.8 1.2E-19 2.6E-24 149.0 15.4 150 17-177 3-167 (772)
202 COG1159 Era GTPase [General fu 99.8 1.2E-19 2.5E-24 131.0 12.8 156 16-179 5-173 (298)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.5E-19 3.3E-24 144.9 14.9 155 19-178 3-191 (594)
204 COG1160 Predicted GTPases [Gen 99.8 2.5E-19 5.3E-24 135.9 14.5 146 18-177 4-164 (444)
205 PRK10218 GTP-binding protein; 99.8 3.2E-19 6.9E-24 143.0 16.0 156 18-178 6-195 (607)
206 cd01876 YihA_EngB The YihA (En 99.8 2.3E-19 5E-24 122.8 12.6 150 19-176 1-169 (170)
207 TIGR03680 eif2g_arch translati 99.8 1.6E-19 3.5E-24 139.7 12.7 158 16-178 3-196 (406)
208 cd01883 EF1_alpha Eukaryotic e 99.8 1E-19 2.2E-24 130.2 10.8 147 19-168 1-195 (219)
209 KOG4423 GTP-binding protein-li 99.8 8.1E-22 1.8E-26 132.1 -0.9 163 14-179 22-195 (229)
210 COG1160 Predicted GTPases [Gen 99.8 7.6E-19 1.6E-23 133.3 14.9 159 16-179 177-352 (444)
211 smart00275 G_alpha G protein a 99.8 5.1E-19 1.1E-23 133.7 13.9 135 45-179 168-335 (342)
212 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.4E-19 9.4E-24 126.0 12.4 146 19-168 1-184 (208)
213 PRK04004 translation initiatio 99.8 1.2E-18 2.5E-23 139.8 16.0 152 16-175 5-215 (586)
214 cd00066 G-alpha G protein alph 99.8 6.7E-19 1.5E-23 132.1 13.6 136 45-180 145-313 (317)
215 cd04169 RF3 RF3 subfamily. Pe 99.8 2.5E-18 5.3E-23 126.0 15.5 110 19-133 4-138 (267)
216 KOG0090 Signal recognition par 99.8 1.1E-18 2.4E-23 119.8 12.5 159 18-177 39-238 (238)
217 cd01884 EF_Tu EF-Tu subfamily. 99.8 5.9E-19 1.3E-23 123.7 11.2 145 17-166 2-171 (195)
218 cd04165 GTPBP1_like GTPBP1-lik 99.8 3E-18 6.6E-23 122.6 14.9 152 19-175 1-220 (224)
219 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 8.8E-19 1.9E-23 124.9 11.9 158 19-179 1-177 (232)
220 PF10662 PduV-EutP: Ethanolami 99.8 5.7E-19 1.2E-23 116.0 10.1 134 19-174 3-142 (143)
221 PRK04000 translation initiatio 99.8 1.1E-18 2.5E-23 135.0 13.4 160 14-178 6-201 (411)
222 COG0486 ThdF Predicted GTPase 99.8 3.3E-18 7.1E-23 130.2 15.4 150 16-179 216-377 (454)
223 PRK10512 selenocysteinyl-tRNA- 99.8 1.3E-18 2.8E-23 140.2 13.7 155 19-178 2-166 (614)
224 PF09439 SRPRB: Signal recogni 99.8 3E-19 6.5E-24 122.3 6.9 125 17-142 3-136 (181)
225 cd04170 EF-G_bact Elongation f 99.8 1.3E-17 2.8E-22 122.8 15.1 110 19-133 1-131 (268)
226 cd01886 EF-G Elongation factor 99.8 1.8E-17 3.8E-22 121.7 15.4 109 19-132 1-130 (270)
227 PRK00741 prfC peptide chain re 99.8 9.7E-18 2.1E-22 133.0 14.8 112 17-133 10-146 (526)
228 PRK13351 elongation factor G; 99.8 2E-17 4.4E-22 135.8 15.8 113 16-133 7-140 (687)
229 KOG1707 Predicted Ras related/ 99.8 2.4E-18 5.2E-23 133.2 9.5 159 14-178 6-175 (625)
230 COG0370 FeoB Fe2+ transport sy 99.8 2.8E-17 6E-22 130.1 14.9 148 17-179 3-165 (653)
231 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-17 2.3E-22 120.9 11.0 160 14-178 69-271 (379)
232 KOG1489 Predicted GTP-binding 99.8 1.9E-17 4.1E-22 120.1 12.3 150 19-175 198-364 (366)
233 PRK12736 elongation factor Tu; 99.8 7.2E-18 1.6E-22 130.1 11.0 159 14-177 9-200 (394)
234 COG1084 Predicted GTPase [Gene 99.8 6.2E-17 1.3E-21 118.1 14.2 153 18-177 169-335 (346)
235 COG0218 Predicted GTPase [Gene 99.8 1.3E-16 2.9E-21 109.5 15.0 163 10-180 17-199 (200)
236 PRK12735 elongation factor Tu; 99.7 5.7E-17 1.2E-21 125.3 14.0 160 13-177 8-202 (396)
237 KOG0082 G-protein alpha subuni 99.7 1.9E-17 4.1E-22 123.3 10.7 136 45-180 179-346 (354)
238 TIGR00485 EF-Tu translation el 99.7 7.9E-17 1.7E-21 124.5 14.5 147 13-164 8-179 (394)
239 cd04167 Snu114p Snu114p subfam 99.7 2.8E-17 6.2E-22 117.1 11.1 108 19-131 2-136 (213)
240 cd04104 p47_IIGP_like p47 (47- 99.7 3.6E-17 7.9E-22 115.2 11.5 157 17-180 1-186 (197)
241 PLN00043 elongation factor 1-a 99.7 9.7E-17 2.1E-21 125.3 12.4 149 15-168 5-203 (447)
242 COG2262 HflX GTPases [General 99.7 5E-16 1.1E-20 116.5 15.6 154 16-178 191-356 (411)
243 PF01926 MMR_HSR1: 50S ribosom 99.7 4.8E-16 1E-20 100.4 13.5 103 19-127 1-116 (116)
244 PLN03126 Elongation factor Tu; 99.7 2.9E-17 6.2E-22 128.8 9.1 148 13-165 77-249 (478)
245 CHL00071 tufA elongation facto 99.7 7.1E-17 1.5E-21 125.2 11.2 147 14-165 9-180 (409)
246 PTZ00141 elongation factor 1- 99.7 2.3E-16 5E-21 123.2 13.9 150 15-168 5-203 (446)
247 TIGR00503 prfC peptide chain r 99.7 5.5E-16 1.2E-20 123.1 16.0 111 17-132 11-146 (527)
248 TIGR00484 EF-G translation elo 99.7 8.1E-16 1.8E-20 126.3 17.2 111 18-133 11-142 (689)
249 TIGR02034 CysN sulfate adenyly 99.7 1.7E-16 3.6E-21 123.0 12.2 147 18-168 1-187 (406)
250 PRK00049 elongation factor Tu; 99.7 4.9E-16 1.1E-20 120.0 14.5 159 13-176 8-201 (396)
251 PRK05124 cysN sulfate adenylyl 99.7 1.4E-16 3.1E-21 125.2 11.1 152 14-169 24-216 (474)
252 cd01885 EF2 EF2 (for archaea a 99.7 1.6E-16 3.4E-21 113.3 9.8 108 19-131 2-138 (222)
253 COG0532 InfB Translation initi 99.7 5.7E-16 1.2E-20 119.6 13.4 152 16-176 4-168 (509)
254 PLN03127 Elongation factor Tu; 99.7 1.8E-15 3.9E-20 118.1 16.3 159 14-177 58-251 (447)
255 COG1163 DRG Predicted GTPase [ 99.7 2.4E-15 5.2E-20 109.7 14.7 155 14-178 60-289 (365)
256 COG0536 Obg Predicted GTPase [ 99.7 1.1E-15 2.4E-20 112.1 12.8 158 20-180 162-335 (369)
257 KOG0462 Elongation factor-type 99.7 1.5E-15 3.2E-20 117.3 13.9 150 19-178 62-235 (650)
258 cd01899 Ygr210 Ygr210 subfamil 99.7 2.7E-15 5.9E-20 112.2 15.0 76 20-95 1-110 (318)
259 PRK05506 bifunctional sulfate 99.7 5.6E-16 1.2E-20 126.2 11.6 152 13-168 20-211 (632)
260 COG5256 TEF1 Translation elong 99.7 1.2E-15 2.6E-20 114.5 12.3 151 15-168 5-201 (428)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 7.8E-15 1.7E-19 103.3 14.5 160 18-179 1-185 (196)
262 PRK12739 elongation factor G; 99.6 7.4E-15 1.6E-19 120.7 15.7 113 16-133 7-140 (691)
263 PRK12740 elongation factor G; 99.6 7.1E-15 1.5E-19 120.7 15.6 106 23-133 1-127 (668)
264 KOG1145 Mitochondrial translat 99.6 7.5E-15 1.6E-19 113.5 14.4 157 15-177 151-315 (683)
265 COG0481 LepA Membrane GTPase L 99.6 4.8E-15 1E-19 112.9 12.7 150 19-178 11-186 (603)
266 KOG1490 GTP-binding protein CR 99.6 5E-16 1.1E-20 118.8 6.6 159 19-179 170-342 (620)
267 PTZ00327 eukaryotic translatio 99.6 5.6E-15 1.2E-19 115.3 12.1 159 15-178 32-233 (460)
268 PRK00007 elongation factor G; 99.6 4.2E-14 9.1E-19 116.2 16.2 112 17-133 10-142 (693)
269 PF00503 G-alpha: G-protein al 99.6 1.1E-14 2.5E-19 112.4 12.0 133 45-177 219-389 (389)
270 KOG1532 GTPase XAB1, interacts 99.6 1.6E-14 3.5E-19 103.2 11.1 165 12-179 14-265 (366)
271 cd01850 CDC_Septin CDC/Septin. 99.6 1.7E-14 3.8E-19 106.3 11.8 111 16-132 3-157 (276)
272 PRK09602 translation-associate 99.6 5E-14 1.1E-18 108.4 14.1 78 18-95 2-113 (396)
273 KOG1191 Mitochondrial GTPase [ 99.6 4.5E-14 9.7E-19 108.0 11.9 161 17-178 268-450 (531)
274 PRK13768 GTPase; Provisional 99.6 3.8E-15 8.2E-20 108.6 5.9 115 62-178 98-247 (253)
275 COG3596 Predicted GTPase [Gene 99.6 1.5E-14 3.2E-19 103.5 8.5 162 14-178 36-222 (296)
276 PRK09866 hypothetical protein; 99.6 1.3E-13 2.9E-18 109.4 14.6 112 61-175 230-350 (741)
277 PRK14845 translation initiatio 99.5 2.4E-13 5.1E-18 114.4 14.5 141 28-176 472-671 (1049)
278 KOG0085 G protein subunit Galp 99.5 6.2E-15 1.3E-19 103.0 4.2 136 45-180 183-351 (359)
279 COG4917 EutP Ethanolamine util 99.5 3.3E-14 7.1E-19 89.8 6.3 136 19-175 3-143 (148)
280 KOG3905 Dynein light intermedi 99.5 5.8E-13 1.3E-17 97.4 13.2 159 18-178 53-290 (473)
281 COG4108 PrfC Peptide chain rel 99.5 2.3E-13 4.9E-18 102.9 11.0 109 19-132 14-147 (528)
282 TIGR00490 aEF-2 translation el 99.5 2.1E-13 4.5E-18 112.6 10.6 113 15-132 17-152 (720)
283 KOG0099 G protein subunit Galp 99.5 7.3E-14 1.6E-18 99.3 6.6 132 48-179 189-370 (379)
284 TIGR00101 ureG urease accessor 99.5 9.9E-13 2.2E-17 92.5 12.0 103 61-178 92-196 (199)
285 smart00010 small_GTPase Small 99.5 8.3E-14 1.8E-18 90.7 5.4 113 18-167 1-115 (124)
286 PF03029 ATP_bind_1: Conserved 99.5 2.5E-13 5.5E-18 97.9 8.2 115 62-177 92-236 (238)
287 KOG0458 Elongation factor 1 al 99.5 5.2E-13 1.1E-17 104.0 9.8 155 12-169 172-373 (603)
288 PF05783 DLIC: Dynein light in 99.4 2.6E-12 5.5E-17 100.4 13.1 161 17-179 25-265 (472)
289 cd01853 Toc34_like Toc34-like 99.4 3.1E-12 6.6E-17 92.9 12.5 119 13-133 27-164 (249)
290 PF04548 AIG1: AIG1 family; I 99.4 1.2E-12 2.6E-17 93.2 10.1 161 18-180 1-188 (212)
291 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.2E-11 2.6E-16 91.5 14.6 117 14-132 35-167 (313)
292 PRK09435 membrane ATPase/prote 99.4 1E-12 2.2E-17 98.6 9.1 108 59-178 147-260 (332)
293 KOG1144 Translation initiation 99.4 2.6E-12 5.7E-17 102.6 11.7 157 14-178 472-687 (1064)
294 COG2895 CysN GTPases - Sulfate 99.4 2.3E-12 5E-17 95.2 10.0 148 16-167 5-192 (431)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.5E-12 7.7E-17 91.5 10.2 139 17-164 39-182 (225)
296 COG1217 TypA Predicted membran 99.4 2.6E-12 5.6E-17 98.0 9.4 155 19-178 7-195 (603)
297 PTZ00258 GTP-binding protein; 99.4 9.5E-12 2.1E-16 95.1 12.2 84 12-95 16-126 (390)
298 TIGR00750 lao LAO/AO transport 99.4 2E-11 4.3E-16 91.3 13.5 107 59-177 125-237 (300)
299 PLN00116 translation elongatio 99.4 2.9E-12 6.4E-17 107.3 10.0 114 13-131 15-163 (843)
300 TIGR00157 ribosome small subun 99.4 4.7E-12 1E-16 91.9 9.4 95 72-175 24-120 (245)
301 PTZ00416 elongation factor 2; 99.4 4.8E-12 1E-16 105.9 10.5 112 15-131 17-157 (836)
302 TIGR00073 hypB hydrogenase acc 99.4 1.1E-11 2.3E-16 88.0 10.3 147 16-177 21-206 (207)
303 KOG3886 GTP-binding protein [S 99.3 1.4E-12 3E-17 91.2 5.2 144 17-162 4-163 (295)
304 KOG1707 Predicted Ras related/ 99.3 9E-11 1.9E-15 91.8 15.1 151 14-177 422-582 (625)
305 COG3276 SelB Selenocysteine-sp 99.3 1.4E-11 3.1E-16 93.5 9.3 151 19-177 2-161 (447)
306 PF05049 IIGP: Interferon-indu 99.3 2.8E-11 6E-16 91.7 10.6 154 16-178 34-218 (376)
307 PRK07560 elongation factor EF- 99.3 2.7E-11 5.9E-16 100.4 10.4 113 15-132 18-153 (731)
308 KOG0461 Selenocysteine-specifi 99.2 8E-11 1.7E-15 87.1 9.7 154 17-178 7-193 (522)
309 KOG0705 GTPase-activating prot 99.2 1.9E-11 4.1E-16 95.0 5.7 161 14-179 27-190 (749)
310 KOG3887 Predicted small GTPase 99.2 2.9E-10 6.4E-15 80.3 11.1 161 16-179 26-203 (347)
311 PF00350 Dynamin_N: Dynamin fa 99.2 2.9E-10 6.2E-15 78.0 10.8 64 61-128 101-168 (168)
312 COG0378 HypB Ni2+-binding GTPa 99.2 1.7E-10 3.6E-15 79.1 8.4 146 17-177 13-200 (202)
313 PF03308 ArgK: ArgK protein; 99.2 1.1E-10 2.3E-15 83.7 7.4 149 16-176 28-228 (266)
314 PRK10463 hydrogenase nickel in 99.2 3E-10 6.5E-15 83.5 9.6 57 117-176 229-287 (290)
315 COG0480 FusA Translation elong 99.1 5.1E-10 1.1E-14 91.3 10.7 112 18-134 11-144 (697)
316 TIGR02836 spore_IV_A stage IV 99.1 2E-09 4.4E-14 82.1 12.9 152 14-174 14-233 (492)
317 COG1703 ArgK Putative periplas 99.1 3.7E-10 7.9E-15 82.3 8.5 152 14-177 48-253 (323)
318 TIGR00993 3a0901s04IAP86 chlor 99.1 1.8E-09 3.9E-14 86.7 12.4 118 13-132 114-250 (763)
319 PF00735 Septin: Septin; Inte 99.1 1.6E-09 3.4E-14 80.1 10.7 113 16-134 3-158 (281)
320 COG0012 Predicted GTPase, prob 99.1 4E-09 8.7E-14 79.2 12.5 79 17-95 2-108 (372)
321 COG0050 TufB GTPases - transla 99.1 1.4E-09 3.1E-14 78.9 9.4 143 12-162 7-177 (394)
322 smart00053 DYNc Dynamin, GTPas 99.1 3.4E-09 7.3E-14 76.4 11.0 114 16-133 25-207 (240)
323 cd01900 YchF YchF subfamily. 99.0 4.5E-10 9.7E-15 82.5 6.2 75 20-94 1-102 (274)
324 cd01855 YqeH YqeH. YqeH is an 99.0 1.2E-09 2.7E-14 76.5 7.1 98 74-178 24-125 (190)
325 PRK09601 GTP-binding protein Y 99.0 2.5E-09 5.4E-14 81.2 9.1 78 18-95 3-107 (364)
326 KOG0468 U5 snRNP-specific prot 99.0 2.1E-09 4.6E-14 85.6 8.6 115 12-131 123-262 (971)
327 COG5257 GCD11 Translation init 99.0 1.3E-09 2.9E-14 80.0 6.4 158 16-178 9-202 (415)
328 KOG1486 GTP-binding protein DR 99.0 3.9E-08 8.4E-13 70.2 13.4 86 14-99 59-154 (364)
329 KOG0410 Predicted GTP binding 99.0 2.1E-09 4.5E-14 79.0 7.1 149 16-178 177-341 (410)
330 cd01859 MJ1464 MJ1464. This f 98.9 3.9E-09 8.5E-14 71.6 7.3 94 75-178 3-96 (156)
331 KOG0463 GTP-binding protein GP 98.9 7.7E-09 1.7E-13 77.7 8.9 153 13-170 129-350 (641)
332 KOG0459 Polypeptide release fa 98.9 2.7E-09 5.9E-14 80.4 6.4 160 11-170 73-278 (501)
333 PRK12289 GTPase RsgA; Reviewed 98.9 6.6E-09 1.4E-13 79.0 8.6 92 75-175 80-172 (352)
334 COG5258 GTPBP1 GTPase [General 98.9 8.6E-09 1.9E-13 77.5 8.3 157 13-174 113-335 (527)
335 KOG1143 Predicted translation 98.9 7.6E-09 1.7E-13 77.6 7.5 157 10-171 160-381 (591)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7E-09 1.5E-13 69.2 6.4 52 19-71 85-138 (141)
337 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.1E-08 2.3E-13 69.5 6.8 55 16-70 101-156 (157)
338 KOG1491 Predicted GTP-binding 98.8 4.6E-08 1E-12 72.5 10.3 86 10-95 13-125 (391)
339 KOG1954 Endocytosis/signaling 98.8 1E-07 2.2E-12 71.6 12.1 117 14-134 55-227 (532)
340 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.9E-13 70.0 6.1 54 16-70 116-171 (172)
341 KOG2486 Predicted GTPase [Gene 98.8 1.2E-08 2.7E-13 73.6 5.8 155 12-175 131-313 (320)
342 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.6E-08 5.7E-13 74.1 7.8 87 79-174 73-160 (287)
343 PRK12288 GTPase RsgA; Reviewed 98.8 3.7E-08 8E-13 75.0 8.6 88 82-175 118-205 (347)
344 PRK00098 GTPase RsgA; Reviewed 98.8 2E-08 4.4E-13 75.1 6.8 84 82-174 78-163 (298)
345 cd01859 MJ1464 MJ1464. This f 98.8 3E-08 6.4E-13 67.2 6.7 55 16-70 100-155 (156)
346 TIGR03597 GTPase_YqeH ribosome 98.8 1.2E-08 2.6E-13 78.3 4.9 98 71-176 50-151 (360)
347 COG5019 CDC3 Septin family pro 98.7 2.8E-07 6.1E-12 69.2 10.4 117 14-136 20-180 (373)
348 KOG0448 Mitofusin 1 GTPase, in 98.7 4.2E-07 9.1E-12 73.0 11.3 143 15-162 107-310 (749)
349 cd01851 GBP Guanylate-binding 98.7 4.9E-07 1.1E-11 64.9 10.8 83 17-99 7-106 (224)
350 cd01858 NGP_1 NGP-1. Autoanti 98.7 2.5E-07 5.5E-12 62.8 8.8 88 81-177 5-94 (157)
351 TIGR00092 GTP-binding protein 98.7 1.7E-07 3.7E-12 71.4 8.5 78 18-95 3-108 (368)
352 cd01856 YlqF YlqF. Proteins o 98.7 8.5E-08 1.8E-12 66.1 6.4 55 16-71 114-170 (171)
353 PRK09563 rbgA GTPase YlqF; Rev 98.7 9.5E-08 2.1E-12 71.2 7.0 56 16-72 120-177 (287)
354 TIGR03596 GTPase_YlqF ribosome 98.6 8.5E-08 1.8E-12 71.0 6.6 55 16-71 117-173 (276)
355 KOG0464 Elongation factor G [T 98.6 2.7E-08 5.8E-13 75.8 3.7 126 14-144 33-183 (753)
356 KOG2655 Septin family protein 98.6 7.6E-07 1.6E-11 67.2 11.3 117 14-136 18-176 (366)
357 cd01849 YlqF_related_GTPase Yl 98.6 2.3E-07 5E-12 62.8 7.6 82 86-176 1-83 (155)
358 TIGR03348 VI_IcmF type VI secr 98.6 5.2E-07 1.1E-11 78.7 10.7 111 19-132 113-257 (1169)
359 COG1618 Predicted nucleotide k 98.6 2.3E-06 5E-11 57.3 11.2 147 16-180 4-178 (179)
360 KOG0460 Mitochondrial translat 98.6 2.8E-07 6.2E-12 68.5 7.4 146 12-161 49-218 (449)
361 PRK14974 cell division protein 98.5 1.9E-06 4.1E-11 65.3 11.4 94 60-170 222-322 (336)
362 cd01855 YqeH YqeH. YqeH is an 98.5 1.7E-07 3.7E-12 65.6 5.3 52 18-70 128-189 (190)
363 cd01849 YlqF_related_GTPase Yl 98.5 2.6E-07 5.6E-12 62.6 5.9 52 16-70 99-154 (155)
364 cd01856 YlqF YlqF. Proteins o 98.5 1.7E-07 3.6E-12 64.6 4.7 89 77-177 12-100 (171)
365 KOG1487 GTP-binding protein DR 98.5 1.7E-06 3.7E-11 62.2 9.1 80 18-97 60-149 (358)
366 COG5192 BMS1 GTP-binding prote 98.5 2.1E-06 4.5E-11 68.1 10.4 140 16-162 68-210 (1077)
367 COG1161 Predicted GTPases [Gen 98.5 3.2E-07 7E-12 69.3 5.9 56 16-71 131-187 (322)
368 KOG0465 Mitochondrial elongati 98.4 1.8E-06 3.8E-11 68.7 8.8 110 19-133 41-171 (721)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 8.8E-07 1.9E-11 59.0 5.9 76 80-165 7-84 (141)
370 PRK10416 signal recognition pa 98.4 5.9E-06 1.3E-10 62.4 10.3 136 17-170 114-302 (318)
371 TIGR03596 GTPase_YlqF ribosome 98.4 1.8E-06 3.9E-11 64.0 7.4 91 77-179 14-104 (276)
372 KOG0447 Dynamin-like GTP bindi 98.3 2E-05 4.4E-10 62.4 12.0 81 61-144 412-507 (980)
373 KOG1547 Septin CDC10 and relat 98.3 1.6E-05 3.6E-10 56.7 9.9 120 17-142 46-208 (336)
374 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.9E-06 8.5E-11 62.6 7.1 89 78-178 18-106 (287)
375 KOG0467 Translation elongation 98.3 3.8E-06 8.2E-11 68.4 7.4 107 19-130 11-136 (887)
376 TIGR00064 ftsY signal recognit 98.3 1.4E-05 3.1E-10 59.1 9.9 94 59-170 153-260 (272)
377 PF03193 DUF258: Protein of un 98.2 7.4E-07 1.6E-11 60.3 2.8 24 18-41 36-59 (161)
378 PRK13796 GTPase YqeH; Provisio 98.2 3.8E-06 8.2E-11 64.7 6.8 87 82-176 66-157 (365)
379 PRK12288 GTPase RsgA; Reviewed 98.2 2E-06 4.3E-11 65.6 5.2 56 19-75 207-271 (347)
380 cd03112 CobW_like The function 98.2 5.6E-06 1.2E-10 56.3 6.9 22 19-40 2-23 (158)
381 PRK01889 GTPase RsgA; Reviewed 98.2 1.3E-05 2.9E-10 61.5 9.3 84 82-174 110-193 (356)
382 PRK12289 GTPase RsgA; Reviewed 98.2 3.4E-06 7.4E-11 64.4 5.8 24 19-42 174-197 (352)
383 TIGR01425 SRP54_euk signal rec 98.2 1.8E-05 3.9E-10 61.8 9.1 109 17-132 100-253 (429)
384 TIGR00157 ribosome small subun 98.1 6.8E-06 1.5E-10 59.9 5.8 53 18-74 121-184 (245)
385 cd03114 ArgK-like The function 98.1 2.8E-05 6.2E-10 52.2 8.1 58 60-129 91-148 (148)
386 COG3523 IcmF Type VI protein s 98.1 2.5E-05 5.5E-10 67.4 9.3 111 20-132 128-270 (1188)
387 PRK14722 flhF flagellar biosyn 98.1 2.4E-05 5.3E-10 60.1 8.3 116 17-132 137-295 (374)
388 TIGR03597 GTPase_YqeH ribosome 98.0 9.6E-06 2.1E-10 62.4 5.6 55 18-73 155-216 (360)
389 PRK13695 putative NTPase; Prov 98.0 0.00013 2.8E-09 50.4 10.5 22 18-39 1-22 (174)
390 PF06858 NOG1: Nucleolar GTP-b 98.0 2.8E-05 6.2E-10 42.8 5.6 44 84-129 13-58 (58)
391 cd03115 SRP The signal recogni 98.0 6.4E-05 1.4E-09 51.8 8.8 67 60-133 82-154 (173)
392 PRK13796 GTPase YqeH; Provisio 98.0 1.2E-05 2.7E-10 61.9 5.6 54 18-72 161-221 (365)
393 PF00448 SRP54: SRP54-type pro 98.0 9E-06 2E-10 57.2 4.2 107 19-133 3-155 (196)
394 COG1162 Predicted GTPases [Gen 98.0 8.1E-06 1.8E-10 60.3 3.8 23 19-41 166-188 (301)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.0 9.9E-06 2.1E-10 60.4 4.3 57 18-75 162-227 (287)
396 cd01983 Fer4_NifH The Fer4_Nif 97.9 8.3E-05 1.8E-09 45.6 7.5 97 20-126 2-99 (99)
397 KOG1534 Putative transcription 97.9 1.9E-05 4.1E-10 55.2 4.6 23 17-39 3-25 (273)
398 PRK00098 GTPase RsgA; Reviewed 97.9 3E-05 6.5E-10 58.1 5.5 25 18-42 165-189 (298)
399 PRK11889 flhF flagellar biosyn 97.9 3.1E-05 6.7E-10 59.7 5.5 108 18-133 242-392 (436)
400 KOG3859 Septins (P-loop GTPase 97.9 2.9E-05 6.3E-10 56.6 4.9 111 17-133 42-191 (406)
401 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.2E-10 51.5 3.2 21 19-39 1-21 (121)
402 COG0523 Putative GTPases (G3E 97.8 0.00041 8.9E-09 52.5 11.1 92 61-161 85-185 (323)
403 cd03111 CpaE_like This protein 97.8 0.00011 2.3E-09 46.5 6.8 101 20-127 2-106 (106)
404 KOG2484 GTPase [General functi 97.8 1.5E-05 3.3E-10 60.6 3.2 57 15-71 250-307 (435)
405 PRK08118 topology modulation p 97.8 1.4E-05 3E-10 54.8 2.7 22 19-40 3-24 (167)
406 KOG0780 Signal recognition par 97.8 6.5E-05 1.4E-09 57.2 6.3 95 16-110 100-239 (483)
407 KOG1424 Predicted GTP-binding 97.8 2.6E-05 5.7E-10 61.1 4.3 54 17-71 314-369 (562)
408 KOG0466 Translation initiation 97.8 9.3E-06 2E-10 59.9 1.7 155 16-177 37-240 (466)
409 COG1419 FlhF Flagellar GTP-bin 97.8 0.0001 2.2E-09 56.7 7.2 109 17-133 203-353 (407)
410 COG0563 Adk Adenylate kinase a 97.8 1.7E-05 3.7E-10 54.9 2.7 23 18-40 1-23 (178)
411 PRK11537 putative GTP-binding 97.8 0.00023 5E-09 53.9 8.7 66 61-133 91-165 (318)
412 PRK12727 flagellar biosynthesi 97.7 0.00016 3.6E-09 57.7 7.9 108 17-132 350-498 (559)
413 PRK14721 flhF flagellar biosyn 97.7 4E-05 8.7E-10 59.8 4.4 107 18-132 192-340 (420)
414 PRK07261 topology modulation p 97.7 2.7E-05 5.9E-10 53.6 2.9 22 19-40 2-23 (171)
415 PF13671 AAA_33: AAA domain; P 97.7 3.3E-05 7.1E-10 51.3 3.0 19 20-38 2-20 (143)
416 COG1162 Predicted GTPases [Gen 97.7 0.00026 5.5E-09 52.6 7.6 92 77-175 72-164 (301)
417 PRK00771 signal recognition pa 97.7 0.00011 2.4E-09 57.7 6.1 109 16-132 94-246 (437)
418 COG3640 CooC CO dehydrogenase 97.7 5.4E-05 1.2E-09 53.9 3.9 47 80-131 151-198 (255)
419 cd02042 ParA ParA and ParB of 97.7 0.00021 4.6E-09 44.8 6.3 81 20-108 2-84 (104)
420 COG0541 Ffh Signal recognition 97.7 0.00022 4.7E-09 55.2 7.3 96 14-109 97-237 (451)
421 PF09547 Spore_IV_A: Stage IV 97.6 0.001 2.2E-08 51.7 10.5 26 14-39 14-39 (492)
422 cd02038 FleN-like FleN is a me 97.6 0.00022 4.8E-09 47.4 6.3 104 22-131 5-110 (139)
423 PRK12726 flagellar biosynthesi 97.6 0.0002 4.3E-09 55.1 6.7 23 17-39 206-228 (407)
424 PRK10867 signal recognition pa 97.6 0.00023 5E-09 55.9 6.7 66 60-132 183-254 (433)
425 PRK12724 flagellar biosynthesi 97.6 9.5E-05 2.1E-09 57.5 4.5 108 17-132 223-373 (432)
426 PRK14723 flhF flagellar biosyn 97.6 0.00014 2.9E-09 60.6 5.6 110 19-133 187-338 (767)
427 TIGR00959 ffh signal recogniti 97.6 0.00038 8.3E-09 54.7 7.7 67 59-132 181-253 (428)
428 PRK14530 adenylate kinase; Pro 97.6 6.6E-05 1.4E-09 53.6 3.0 22 18-39 4-25 (215)
429 PF13521 AAA_28: AAA domain; P 97.6 4.5E-05 9.8E-10 52.0 2.1 22 19-40 1-22 (163)
430 cd02019 NK Nucleoside/nucleoti 97.6 7.1E-05 1.5E-09 43.4 2.6 21 20-40 2-22 (69)
431 COG1126 GlnQ ABC-type polar am 97.5 8.9E-05 1.9E-09 52.3 3.2 24 19-42 30-53 (240)
432 PRK06731 flhF flagellar biosyn 97.5 0.00029 6.3E-09 52.0 6.1 108 18-133 76-226 (270)
433 cd00009 AAA The AAA+ (ATPases 97.5 0.001 2.3E-08 43.7 8.4 24 18-41 20-43 (151)
434 KOG4273 Uncharacterized conser 97.5 0.0015 3.3E-08 47.1 9.4 111 18-134 5-125 (418)
435 PRK05703 flhF flagellar biosyn 97.5 0.00053 1.1E-08 53.9 7.8 67 59-133 298-372 (424)
436 PRK03839 putative kinase; Prov 97.5 7.5E-05 1.6E-09 51.8 2.7 22 19-40 2-23 (180)
437 PRK06217 hypothetical protein; 97.5 8.1E-05 1.8E-09 51.8 2.9 23 18-40 2-24 (183)
438 KOG2485 Conserved ATP/GTP bind 97.5 0.00014 3.1E-09 53.8 4.0 58 14-71 140-206 (335)
439 PF13555 AAA_29: P-loop contai 97.5 0.00011 2.4E-09 41.4 2.7 21 19-39 25-45 (62)
440 PRK12723 flagellar biosynthesi 97.5 0.00087 1.9E-08 52.0 8.4 110 17-133 174-327 (388)
441 TIGR02475 CobW cobalamin biosy 97.5 0.00086 1.9E-08 51.3 8.3 21 20-40 7-27 (341)
442 smart00382 AAA ATPases associa 97.4 0.00012 2.5E-09 47.9 3.0 26 18-43 3-28 (148)
443 PRK14531 adenylate kinase; Pro 97.4 0.00012 2.6E-09 51.0 3.0 23 17-39 2-24 (183)
444 PF13238 AAA_18: AAA domain; P 97.4 0.00012 2.6E-09 47.5 2.9 21 20-40 1-21 (129)
445 cd03116 MobB Molybdenum is an 97.4 0.00019 4.1E-09 48.8 3.7 50 19-74 3-52 (159)
446 PF00005 ABC_tran: ABC transpo 97.4 0.00015 3.2E-09 47.8 3.2 23 19-41 13-35 (137)
447 PRK14738 gmk guanylate kinase; 97.4 0.00017 3.6E-09 51.2 3.6 27 14-40 10-36 (206)
448 PF03266 NTPase_1: NTPase; In 97.4 0.00018 3.8E-09 49.4 3.5 22 19-40 1-22 (168)
449 COG1116 TauB ABC-type nitrate/ 97.4 0.00012 2.6E-09 52.7 2.7 23 19-41 31-53 (248)
450 PRK13949 shikimate kinase; Pro 97.4 0.00013 2.8E-09 50.1 2.7 21 19-39 3-23 (169)
451 PF00004 AAA: ATPase family as 97.4 0.00013 2.9E-09 47.5 2.6 21 20-40 1-21 (132)
452 PRK14532 adenylate kinase; Pro 97.4 0.00014 2.9E-09 50.8 2.8 21 19-39 2-22 (188)
453 cd00071 GMPK Guanosine monopho 97.4 0.00015 3.2E-09 48.1 2.7 21 20-40 2-22 (137)
454 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00014 3E-09 50.6 2.7 21 18-38 4-24 (188)
455 TIGR02322 phosphon_PhnN phosph 97.4 0.00014 3E-09 50.4 2.6 22 19-40 3-24 (179)
456 COG1136 SalX ABC-type antimicr 97.4 0.00014 3.1E-09 51.9 2.6 23 19-41 33-55 (226)
457 TIGR00235 udk uridine kinase. 97.4 0.00019 4.1E-09 50.9 3.3 24 17-40 6-29 (207)
458 PTZ00088 adenylate kinase 1; P 97.4 0.00017 3.7E-09 52.0 3.0 22 18-39 7-28 (229)
459 PRK10078 ribose 1,5-bisphospho 97.3 0.00017 3.7E-09 50.3 2.9 23 19-41 4-26 (186)
460 cd01428 ADK Adenylate kinase ( 97.3 0.00015 3.3E-09 50.7 2.5 22 19-40 1-22 (194)
461 PLN02200 adenylate kinase fami 97.3 0.00028 6.2E-09 51.1 3.9 23 17-39 43-65 (234)
462 PF03205 MobB: Molybdopterin g 97.3 0.00021 4.6E-09 47.5 3.0 22 19-40 2-23 (140)
463 PF04665 Pox_A32: Poxvirus A32 97.3 0.0002 4.3E-09 51.8 3.0 25 16-40 12-36 (241)
464 TIGR01351 adk adenylate kinase 97.3 0.00017 3.6E-09 51.4 2.5 21 19-39 1-21 (210)
465 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00018 4E-09 49.9 2.7 20 20-39 2-21 (183)
466 TIGR03263 guanyl_kin guanylate 97.3 0.00019 4.1E-09 49.7 2.7 22 19-40 3-24 (180)
467 PRK02496 adk adenylate kinase; 97.3 0.00024 5.3E-09 49.4 3.1 22 18-39 2-23 (184)
468 PRK00625 shikimate kinase; Pro 97.3 0.00023 5E-09 49.1 2.7 21 19-39 2-22 (173)
469 cd02023 UMPK Uridine monophosp 97.3 0.0002 4.4E-09 50.4 2.6 21 20-40 2-22 (198)
470 PF07728 AAA_5: AAA domain (dy 97.3 0.00025 5.5E-09 46.9 2.9 21 19-39 1-21 (139)
471 PRK08233 hypothetical protein; 97.3 0.00028 6.1E-09 48.8 3.2 23 18-40 4-26 (182)
472 PRK05480 uridine/cytidine kina 97.3 0.00029 6.2E-09 50.1 3.3 25 16-40 5-29 (209)
473 COG1117 PstB ABC-type phosphat 97.2 0.00022 4.8E-09 50.3 2.5 20 19-38 35-54 (253)
474 KOG2423 Nucleolar GTPase [Gene 97.2 0.00013 2.9E-09 55.7 1.5 58 13-71 303-362 (572)
475 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00029 6.3E-09 44.4 2.6 20 19-38 17-36 (107)
476 KOG0469 Elongation factor 2 [T 97.2 0.0017 3.6E-08 51.4 7.2 108 19-131 21-163 (842)
477 KOG3347 Predicted nucleotide k 97.2 0.00027 5.9E-09 46.9 2.5 25 15-39 5-29 (176)
478 cd01130 VirB11-like_ATPase Typ 97.2 0.0003 6.6E-09 49.1 2.9 23 18-40 26-48 (186)
479 cd02025 PanK Pantothenate kina 97.2 0.00025 5.5E-09 50.9 2.4 21 20-40 2-22 (220)
480 PRK05057 aroK shikimate kinase 97.2 0.00031 6.6E-09 48.4 2.7 23 18-40 5-27 (172)
481 COG3638 ABC-type phosphate/pho 97.2 0.00031 6.7E-09 50.2 2.7 21 19-39 32-52 (258)
482 COG3840 ThiQ ABC-type thiamine 97.2 0.00034 7.3E-09 48.3 2.7 21 19-39 27-47 (231)
483 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0018 4E-08 47.8 6.8 23 19-41 82-104 (264)
484 PRK00300 gmk guanylate kinase; 97.2 0.0003 6.6E-09 49.7 2.6 22 19-40 7-28 (205)
485 PRK14737 gmk guanylate kinase; 97.2 0.00032 7E-09 49.0 2.7 23 18-40 5-27 (186)
486 PRK00279 adk adenylate kinase; 97.2 0.00033 7.2E-09 50.0 2.8 21 19-39 2-22 (215)
487 PRK14529 adenylate kinase; Pro 97.2 0.00034 7.3E-09 50.2 2.8 21 19-39 2-22 (223)
488 PF13401 AAA_22: AAA domain; P 97.2 0.00039 8.5E-09 45.3 2.9 23 19-41 6-28 (131)
489 COG1763 MobB Molybdopterin-gua 97.1 0.0005 1.1E-08 46.6 3.4 51 19-75 4-54 (161)
490 TIGR01313 therm_gnt_kin carboh 97.1 0.00026 5.6E-09 48.2 2.1 22 20-41 1-22 (163)
491 PRK14528 adenylate kinase; Pro 97.1 0.00038 8.2E-09 48.6 2.9 21 19-39 3-23 (186)
492 cd01131 PilT Pilus retraction 97.1 0.00033 7.2E-09 49.4 2.6 23 19-41 3-25 (198)
493 COG3839 MalK ABC-type sugar tr 97.1 0.00034 7.5E-09 53.0 2.7 23 19-41 31-53 (338)
494 PRK10751 molybdopterin-guanine 97.1 0.0005 1.1E-08 47.3 3.3 23 18-40 7-29 (173)
495 PLN02459 probable adenylate ki 97.1 0.00052 1.1E-08 50.2 3.5 24 16-39 28-51 (261)
496 cd02036 MinD Bacterial cell di 97.1 0.018 4E-07 39.5 11.2 65 62-132 64-128 (179)
497 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00051 1.1E-08 45.1 3.1 32 19-50 24-58 (133)
498 COG1120 FepC ABC-type cobalami 97.1 0.00038 8.3E-09 50.8 2.7 21 19-39 30-50 (258)
499 PRK06547 hypothetical protein; 97.1 0.00053 1.2E-08 47.2 3.2 26 15-40 13-38 (172)
500 cd03238 ABC_UvrA The excision 97.1 0.00045 9.8E-09 47.8 2.8 20 19-38 23-42 (176)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-39 Score=216.40 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=138.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|+.|+|||||+.||..+.|.+ +..|+|++.....+ +.+++++|||+||++|+....+||++||++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 456899999999999999999999999999 99999966655444 7789999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceE-EEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWA-IFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 167 (182)
+|||+++.+||..+..|+.++..+. ..++|.++|+||||+.+..... +..+. +....+++ ++++||+++.+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~----fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQE----FADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHH----HHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999997765 4678999999999998764331 22222 22334445 9999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 030122 168 EGMDWLSNTLKSGG 181 (182)
Q Consensus 168 ~~~~~l~~~i~~~~ 181 (182)
+.|..+...+++++
T Consensus 162 ~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 162 DAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888654
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-38 Score=210.67 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=144.9
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (182)
....+.+..|++|+|+.++|||||++|++.+.|.. +.+|+|++...... ..+++++|||+|||+|+.+.+.|+++
T Consensus 15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence 34556677999999999999999999999999988 99999966655444 67899999999999999999999999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+.++|+|||+++..||+...+|+.+++..+...++-+++|+||.|+.+... +....+....++.+..|.++||+.|.
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq---vs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ---VSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhh---hhHHHHHHHHHHhCcEEEEecccCCC
Confidence 999999999999999999999999999988777799999999999997643 33333334445666679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
||+++|..+..++.+.
T Consensus 172 NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 172 NVKQLFRRIAAALPGM 187 (221)
T ss_pred CHHHHHHHHHHhccCc
Confidence 9999999988877654
No 3
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=4.5e-37 Score=213.68 Aligned_cols=166 Identities=51% Similarity=0.935 Sum_probs=147.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||.+++...+.+..+.+.+||++|+++++.+|..+++++|++|+|||+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~ 94 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 94 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 45689999999999999999999988887788999988888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..++..++......++|+++++||+|+......+++.+.++......+.+.++++||++|+|+.++|+||.
T Consensus 95 s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 99999999998888887655456899999999999988777778888887766666677788999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 175 ~~~~~~ 180 (181)
T PLN00223 175 NNIANK 180 (181)
T ss_pred HHHhhc
Confidence 988764
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=209.14 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=136.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|..++|||||+.|+..++|.+ ..||+| +...++.+ ..++|.||||+|+++|.++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 356899999999999999999999999999 799999 55555666 4599999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||+++.+||..+..|++++..... +++-+.+|+||+|+.+.+. .++. ...+.+.+..++++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-----~~yAe~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-----QAYAESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-----HHHHHhcCCEEEEEecccccCHH
Confidence 99999999999999999999977654 7888999999999987332 2222 12223455679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|..|.+.+..
T Consensus 157 ~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 157 EIFQAIAEKLPC 168 (200)
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 5
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.7e-36 Score=209.89 Aligned_cols=164 Identities=54% Similarity=0.943 Sum_probs=145.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||++++...+.+..+.+.+||++|+++++.+|..+++++|++|+|||+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 34689999999999999999999888876688999988777778889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++....|+..++......++|+++|+||+|+.+....+++.+.++....+.+.+.++++||++|.|++++|+||.
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999887665446799999999999987666777877777776666778888999999999999999998
Q ss_pred HHHh
Q 030122 175 NTLK 178 (182)
Q Consensus 175 ~~i~ 178 (182)
+.+.
T Consensus 171 ~~~~ 174 (175)
T smart00177 171 NNLK 174 (175)
T ss_pred HHhc
Confidence 7754
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=2.1e-36 Score=208.13 Aligned_cols=160 Identities=46% Similarity=0.907 Sum_probs=140.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
..+||+++|++|||||||++++..+.+..+.||.+.+...+.+..+.+.+||++|+++++.++..+++++|++|+|||++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t 87 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA 87 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCC
Confidence 35899999999999999999999888767888999877777778899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.+|+.+..|+..++......++|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+||.+
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 88 DRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred chhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 99999999999988877654567999999999999876666777777666555556678999999999999999999864
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=3.6e-36 Score=205.27 Aligned_cols=158 Identities=54% Similarity=0.972 Sum_probs=138.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|.+|||||||++++..+.+..+.||+++....+.+..+.+.+||++|+++++.+|..+++++|++++|||++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788999987777778889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.+++.+..|+..++......+.|+++++||+|+.+....+++...+.......+.+.++++||++|.|++++|+||.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999999888876544467899999999999765555666666666655666778899999999999999999864
No 8
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.1e-35 Score=205.62 Aligned_cols=163 Identities=44% Similarity=0.824 Sum_probs=152.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.+++||+++|++||||||+++++..+......||.|++...+.+.+..+.+||.+|+..+++.|+.|+.++|++|||+|.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs 91 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDS 91 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEET
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEec
Confidence 66789999999999999999999988877799999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC-CCceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++.+++.+....+..++......++|+++++||+|+.+....+++...+.+.... .+.+.++.||+.+|+|+.+.|+||
T Consensus 92 sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 92 SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 9999999999999999988777899999999999999988888999888888776 788999999999999999999999
Q ss_pred HHHH
Q 030122 174 SNTL 177 (182)
Q Consensus 174 ~~~i 177 (182)
.+++
T Consensus 172 ~~~~ 175 (175)
T PF00025_consen 172 IEQI 175 (175)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 9
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.9e-36 Score=207.66 Aligned_cols=166 Identities=49% Similarity=0.892 Sum_probs=145.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++..+.+..+.||.+.+...+....+.+.+||++|+++++.+|..+++++|++|+|+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~ 94 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 34589999999999999999999988887778899988777778889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++++++.....++..++......++|+++|+||.|+.+....+++...++......+.+.++++||++|.|++++|+||.
T Consensus 95 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 95 NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 99999999998888887654456789999999999987666677777777776666777888999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+..+
T Consensus 175 ~~i~~~ 180 (182)
T PTZ00133 175 ANIKKS 180 (182)
T ss_pred HHHHHh
Confidence 877654
No 10
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=9.9e-36 Score=194.46 Aligned_cols=166 Identities=41% Similarity=0.749 Sum_probs=156.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.+++++|+++|+.||||||++++|.+.+.....||.|++.+++.++++.+++||++||..+++.|++||+.+|++|+|+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 45689999999999999999999999887779999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
.+++.++++....+..++......+.|+++++||.|++.+...+++...+.+... +...++++.||+.+|+++.+.++|
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999998888888777788999999999999998889999999988887 888999999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+++.+.+
T Consensus 173 L~~~l~~ 179 (185)
T KOG0073|consen 173 LCDDLMS 179 (185)
T ss_pred HHHHHHH
Confidence 9998765
No 11
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-36 Score=204.87 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=140.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+...-+||+++|++|||||||+.+|..+.|.. +..|+|++.+. +.. ..+.+++|||+||++|+.+...|++.|+
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 367778999999999999999999999999988 89999966554 444 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|||+++..||+.+..|++.+-+.. ..++|.++|+||+|+...+. +....+...+...++.+++|||++|.||
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~---V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQ---VSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeecccccccccc---ccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 9999999999999999999999986665 45999999999999987432 2222333333445677999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
.+.|-.|++.++.+
T Consensus 163 ~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 163 EEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998853
No 12
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=198.08 Aligned_cols=169 Identities=53% Similarity=0.915 Sum_probs=161.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.....+.+|+++|..++||||++++|..+++....||+|++...+.++++.|.+||.+|+++++++|..|+++.+++|||
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 45677899999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+|.++++++.++..-+..++......+.|+++++||.|++++....++.+.+.+..++++...+..|||.+|+|+.+.++
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~ 171 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLD 171 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHH
Confidence 99999999999999999998888778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
|+...+..+
T Consensus 172 wl~~~~~~~ 180 (181)
T KOG0070|consen 172 WLSNNLKKR 180 (181)
T ss_pred HHHHHHhcc
Confidence 999988765
No 13
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=8.6e-35 Score=200.34 Aligned_cols=162 Identities=46% Similarity=0.802 Sum_probs=138.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|||||||++++.+..+..+.||.+.....+.+..+.+.+||+||+++++.+|..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999988777889999888778888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+++.+..|+..++......+.|+++|+||+|+.+....+++......... ..+.+.++++||++|.|++++|+||.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999987654567899999999999866565666555433322 23345788999999999999999999887
Q ss_pred hcC
Q 030122 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.+.
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 653
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=200.34 Aligned_cols=166 Identities=17% Similarity=0.208 Sum_probs=140.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||++++.+.+|.. +..|+| +..+.+.+ .-+.++||||+|+++|+++.-.+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 4567899999999999999999999999998 999999 44444444 567899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCC---CCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEEL---KGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 164 (182)
++|||++++.||+.+..|..+.+..+.. ...|+++++||+|+.+... ..+....++.++ .++.++||++|||.+.
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999998877643 3469999999999976321 233344444555 3578999999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|+.+.|..+.+.++..
T Consensus 165 NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 165 NVDEAFEEIARRALAN 180 (210)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 15
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=8.5e-35 Score=201.09 Aligned_cols=163 Identities=44% Similarity=0.798 Sum_probs=140.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+....+||+++|++|||||||++++.+..+..+.+|.++....+.+.++.+.+||+||++.++.++..+++++|++++||
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 34456899999999999999999999886666888999888888888899999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.++.....|+..++......+.|+++|+||+|+......+++...+.........++++++||++|.|++++|+|
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999999999888876555578999999999999876666666666655444556788999999999999999999
Q ss_pred HHH
Q 030122 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
++.
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3e-35 Score=207.14 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=127.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+.|+++|+.|||||||++++..+.|.+ +.+|++.. ...+.+. .+.+.+|||+|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999999977 78888744 4456664 488999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++++||+.+..|+..+.+. ...++|+++|+||+|+...... .+....+.. ...++.+++|||++|.|++++|.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999999998876544 3467999999999999653321 111111111 11245699999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99988764
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.7e-35 Score=205.52 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=130.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|.+|+|||||+++|.++.+.. +.++.+... ..+.+. .+.+.+||++|+++|+.++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999988866 667777443 444543 4889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++.+|+.+..|+..+.... ++.|+++|+||+|+..... .++.. . .++..++++++|||++|.|+++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-~----~a~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-A----YAERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-H----HHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999999999996654 6899999999999965322 22221 1 2233456799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++++.+..+
T Consensus 158 ~F~~l~~~i~~~ 169 (189)
T cd04121 158 SFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHh
Confidence 999999877643
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5e-35 Score=201.99 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=131.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|.+|||||||++++.++.+.. +.||++... ..+.+ ..+.+.+||++|+++++.++..++..+|++|+||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999999876 788887333 34455 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.+|+.+..|+..+.......++|+++|+||+|+........ .......+..++++++|||++|.|++++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---EEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---HHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999998887776544446899999999999865432211 1111222334568999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+++.+.+..
T Consensus 159 l~~~~~~~~ 167 (172)
T cd04141 159 LVREIRRKE 167 (172)
T ss_pred HHHHHHHhc
Confidence 998887543
No 19
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=192.21 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=142.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||++||..|+|||||+.+|..+.|.+ ...|+| +..+.+.+ ..+++.||||+|+++|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 345566899999999999999999999999999 555588 44455555 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|+|||++.+++|..+..|++++-.+....++-.++|+||+|.... ..+....++.+++...+.++++||++.+|+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 99999999999999999999999877766678899999999997643 244555566666778888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
..+|+.++..+.+.
T Consensus 163 ~~~FeelveKIi~t 176 (209)
T KOG0080|consen 163 QCCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
No 20
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=4.3e-34 Score=197.75 Aligned_cols=160 Identities=46% Similarity=0.791 Sum_probs=140.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
...||+++|++|+|||||++++..+.+..+.||.+.+...+.+..+.+.+||+||++.++..|..+++++|++++|+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s 93 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECC
Confidence 35799999999999999999999988877888988877788888899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+++++.....++..+++.....++|+++++||+|+......+++.+.+.....++..++++++||++|.|++++|+||.+
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 99999988888888876655567999999999999876566777777766555566778999999999999999999975
No 21
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.2e-35 Score=200.80 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=128.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||+.++..+.|.. +.||++... ..+.. ..+.+.+|||+|+++++.++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 699999999999999999999999987 889987333 23344 45889999999999999999999999999999999
Q ss_pred CCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-------HHHHHHhhcccccCCCce-EEEEecccCCC
Q 030122 94 SSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD-------DAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
+++++||+.+ ..|+..+.... .+.|+++|+||+|+.+... ...+.........+..++ .+++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 58998886654 5799999999999965321 001112222222233344 59999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
No 22
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=6.4e-34 Score=193.94 Aligned_cols=157 Identities=70% Similarity=1.131 Sum_probs=135.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|+|||||++++..+.+....||++++...+.+.+..+.+||+||++.++.+|..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888777788888877778788899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....++..+++.....++|+++|+||+|+.+.....++...+.....+....+++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88887777777665544568999999999999866555666666655555555678999999999999999999975
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.7e-35 Score=202.02 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=129.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++..+.+.+ +.||++... ..+.+ ..+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 46899999999999999999999999877 888987333 33444 467899999999999999999999999999999
Q ss_pred EeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhcccccCCCc-eEEEEecc
Q 030122 92 VDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (182)
||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+...++..+ ++|++|||
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 999999999997 68888886653 5799999999999864210 00111122222333444 37999999
Q ss_pred cCCCC-HHHHHHHHHHHHhc
Q 030122 161 IKGEG-LFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~-i~~~~~~l~~~i~~ 179 (182)
++|.| ++++|..+++++.+
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987654
No 24
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=5.6e-34 Score=195.92 Aligned_cols=157 Identities=32% Similarity=0.510 Sum_probs=137.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+|+++|++|||||||++++.+.....+.||.++....+.+..+.+++||++|++.++.+|..+++++|++|+|||++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999773333889999888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC---CCceEEEEecccCC------CCHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK---NRQWAIFKTCAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~ 169 (182)
+++.+..|+..++......++|+++|+||+|+.......++.+.+...... ...+.++++||++| .|+.+.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999998876555689999999999998877777777777665542 24578889999998 899999
Q ss_pred HHHHHH
Q 030122 170 MDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 25
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1e-33 Score=193.46 Aligned_cols=157 Identities=36% Similarity=0.658 Sum_probs=132.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC-cc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV-VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
+|+++|++|||||||++++.+..+ .. +.||.++....+....+.+.+||+||+++++.+|..+++++|++|+|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 33 7899997777777788999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 97 TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+.++.....|+..++.... ..++|+++|+||+|+.+....+++...+.........+.++++||++|.|++++|+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999988888888766432 25799999999999987655566666655544344456799999999999999999987
Q ss_pred H
Q 030122 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 26
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-35 Score=194.32 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=137.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+|++++|+.|+|||+|+.||+...|.+ ...|+|++. ..+.+ +.+++++|||+|++.|++....|++.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 45899999999999999999999999998 888998444 44444 78999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||+++.+||..+..|+.++.+.. ..++-+++++||+|+...+ ++.++.+..++++.+..++++||++++|+++.|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 999999999999999999998874 4799999999999998654 334444444555566669999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
....+.+..
T Consensus 161 ~nta~~Iy~ 169 (216)
T KOG0098|consen 161 INTAKEIYR 169 (216)
T ss_pred HHHHHHHHH
Confidence 888877653
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.2e-34 Score=201.90 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=127.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|+.|||||||++++..+.+.+ +.||++.... .+.+ ..+.+.+|||+|+++|+.+++.+++++|++|+||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 4899999999999999999999999876 8899884333 2333 4588999999999999999999999999999999
Q ss_pred eCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHH--------hhcccccCCCc-eEEEEeccc
Q 030122 93 DSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|+++++||+.+. .|...+.... .++|+++|+||+|+.+.... +.+.+ ..+....+..+ ++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 999999999997 5777665432 58999999999999654221 11111 11111122233 579999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|++++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.6e-34 Score=202.61 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=132.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|.+|||||||+++++.+.+.. +.+|++.......+ ..+.+.+||++|++++..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 667899999999999999999999998877 89999866555443 4589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++++++|+.+..|+..+.... .++|+++|+||+|+..... .+++ . ..+...++|+++||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~----~~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--T----FHRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--H----HHHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999999999987653 6899999999999864321 2222 1 1123456799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|.|+++.+.+.
T Consensus 163 ~f~~l~~~~~~~ 174 (219)
T PLN03071 163 PFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHcC
Confidence 999999888643
No 29
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=180.77 Aligned_cols=166 Identities=46% Similarity=0.885 Sum_probs=157.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
..++++|+.+|..++||||++.+|+-+......||.|++++++.++.+.|.+||++|+++.+++|.+||.+..++|||+|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 44578999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
..+.++++++..-++.++..+...+.|+++.+||.|++++..+.++.+.+.++..+.+...+..+|+.+|+|+.+-|.|+
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswl 173 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWL 173 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 030122 174 SNTLKS 179 (182)
Q Consensus 174 ~~~i~~ 179 (182)
..-+..
T Consensus 174 snn~~~ 179 (180)
T KOG0071|consen 174 SNNLKE 179 (180)
T ss_pred HhhccC
Confidence 876543
No 30
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=2.4e-33 Score=195.44 Aligned_cols=164 Identities=38% Similarity=0.683 Sum_probs=135.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++..+.+....||.++....+.+ .++.+.+|||+|+++++.+|..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999998887777888765555444 46899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|+|++++.+++.+..|+..+.......++|+++|+||+|+......+++......... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999999999888888876554568999999999999765555555544443322 223467899999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 31
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6e-34 Score=203.73 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=131.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+....+||+++|++|||||||+++|.++.|.. +.||++..+. .+.+ ..+.+.+|||+|+++|+.+++.+++++|++
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 44567899999999999999999999999887 8899874432 2333 568899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhcccccCCCce-EEEE
Q 030122 89 IYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFK 157 (182)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~ 157 (182)
|+|||++++++|+.+ ..|+..+.... .+.|+++|+||+|+..... ...+....+...++..++ .|++
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999985 78888887643 5789999999999864210 011111222223334455 6999
Q ss_pred ecccCCC-CHHHHHHHHHHHHhcC
Q 030122 158 TCAIKGE-GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 158 ~Sa~~~~-~i~~~~~~l~~~i~~~ 180 (182)
|||++|. |++++|..++..+.+.
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999887653
No 32
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-34 Score=198.76 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=126.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||++... ..+.+ ..+.+.+|||+|++++..+++.+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 3699999999999999999999999877 888887333 23444 5588999999999999999999999999999999
Q ss_pred eCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---------HHHHHhhcccccCCCce-EEEEeccc
Q 030122 93 DSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD---------AAVSEALELHKIKNRQW-AIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (182)
|+++++||+.+ ..|+..+.+.. ++.|+++|+||+|+.+.... ..+....+....+..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 68888887653 68999999999998642100 01111122222333444 79999999
Q ss_pred CCCC-HHHHHHHHHHHHh
Q 030122 162 KGEG-LFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~-i~~~~~~l~~~i~ 178 (182)
+|+| ++++|..++++..
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998655
No 33
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7.2e-34 Score=202.24 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=129.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|.+|+|||||+++|.++.+....+|++.......+..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987778888866665566778999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-------------------CC--HHHHHHhhcccc---------
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-------------------LD--DAAVSEALELHK--------- 147 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-------------------~~--~~~~~~~~~~~~--------- 147 (182)
++|+.+..|+..+.... ..++|+++|+||+|+.+. .. .++. ..+....
T Consensus 81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~-~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA-KAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH-HHHHHHhCcccccccc
Confidence 99999999988887643 357999999999998651 11 1111 1111110
Q ss_pred -cCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++|++|||++|.|++++|.++++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0012367999999999999999999998775
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=8.7e-34 Score=194.78 Aligned_cols=156 Identities=17% Similarity=0.225 Sum_probs=128.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.... .+.. ..+.+.+||++|++++...+..+++++|++|+||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 799999999999999999999998877 7778775443 3444 4578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+..... .++.... ++...++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999998875543 35789999999999976432 2222221 12334679999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++++.+.+
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999988754
No 35
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.8e-33 Score=194.59 Aligned_cols=162 Identities=31% Similarity=0.504 Sum_probs=141.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||++++.++.+..+.||.+.....+.+.++.+.+||++|+..++.+|..++.++|++++|+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~ 94 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDA 94 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 44589999999999999999999998776677888877777777889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC-------CCceEEEEecccCCCCHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-------NRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~ 167 (182)
++++++.....++..+++.....+.|+++|+||+|+......+++.+.+++.... .+...++.+||++|.|++
T Consensus 95 ~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 174 (184)
T smart00178 95 YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYG 174 (184)
T ss_pred CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChH
Confidence 9999999999888888765555789999999999998777788888887765432 256789999999999999
Q ss_pred HHHHHHHHH
Q 030122 168 EGMDWLSNT 176 (182)
Q Consensus 168 ~~~~~l~~~ 176 (182)
++++||...
T Consensus 175 ~~~~wl~~~ 183 (184)
T smart00178 175 EGFKWLSQY 183 (184)
T ss_pred HHHHHHHhh
Confidence 999999865
No 36
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3.8e-33 Score=191.24 Aligned_cols=154 Identities=28% Similarity=0.519 Sum_probs=134.5
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
|+++|++|||||||++++.++.+.. +.||.++....+...++.+.+||++|+++++.+|..+++++|++++|||.+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7999999999999999999887766 889999877777778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccC------CCCHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIK------GEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~~ 171 (182)
++.....|+..+.... .++|+++|+||+|+.......++...+..... ++..+.++++||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999999988886553 68999999999999877766666666555444 55678899999998 999999999
Q ss_pred HHHH
Q 030122 172 WLSN 175 (182)
Q Consensus 172 ~l~~ 175 (182)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8763
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.1e-33 Score=196.53 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=128.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||+++|.++.+.. +.||++.+. ..+.+ ..+.+.+||++|+++++.++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998877 888888543 34444 357899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCC--CCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+ ....+++.+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999999988775432 236789999999999973 23333333222111 1146999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++++.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.7e-33 Score=191.55 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=126.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+ .....+.+. .+.+.+||++|+++++.++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 699999999999999999999988876 677776 333445553 4678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++++|+.+..|+..+.......+.|+++|+||+|+.+.... .+....+. +....+++++||++|.|++++|.+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999998877655568999999999998653221 11111111 122367999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+.+.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98765
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-33 Score=195.96 Aligned_cols=160 Identities=16% Similarity=0.259 Sum_probs=130.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe------------CCEEEEEEECCCCCCChhhhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY------------NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~------------~~~~~~i~d~~g~~~~~~~~~~ 80 (182)
..+||+++|++|||||||++++.++.+.. +.+|++.+.. .+.+ ..+.+.+||++|+++++.++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999877 7888874443 3333 2378999999999999999999
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++++|||++++++|..+..|+..+.......+.|+++|+||+|+.+... .++. ..+ .+..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence 9999999999999999999999999999887654446789999999999975432 2222 111 12234579999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++++.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999877653
No 40
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-34 Score=185.27 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=134.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
-.+||+++|..|+|||||+++|..+-|++ ...|+|+ -++++.+ ++++++||||+|+++|++....|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 35799999999999999999999999999 8999994 4455555 78999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||++...+|+.+..|+.++-++. ..++.-|+|+||.|+.+.+ ++.+..+.++.+...+.++++||+..+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 999999999999999999997765 3677889999999998653 333334434344455679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
..+.-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 88765543
No 41
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.3e-33 Score=193.45 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=127.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|.+|||||||+++++.+.+.+ +.||++.. ...+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999888876 77787732 334444 3567889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++..+|+.+..|+..+.......+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA----RQWGCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH----HHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999999877655578999999999999753221 11111111 12235799999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
++.+.+.
T Consensus 157 ~l~~~l~ 163 (164)
T cd04175 157 DLVRQIN 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 42
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=6.8e-33 Score=189.14 Aligned_cols=157 Identities=39% Similarity=0.743 Sum_probs=134.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+|+++|++|||||||++++.++.+....||.++....+.. ..+.+.+||++|++.+...|..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 6899999999999999999999887778888877776666 568999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.++.....|+..+++.....+.|+++|+||+|+......+++...+..... ....++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999999999988877655568999999999999765556666666544333 335678999999999999999999864
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-33 Score=195.12 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.+ +.||++.... .+.+. .+.+.+||++|++++..++..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 699999999999999999999999866 8899884443 44453 3789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-H--------HHhhcccccCCC-ceEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNR-QWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~-~~~~~~~Sa~~ 162 (182)
++++++|+.+.. |+..+.... .++|+++|+||+|+.......+ + ....+....+.. .+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999974 777765543 5799999999999865321100 0 000011111222 36799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+.++.++
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998864
No 44
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=1.2e-32 Score=187.63 Aligned_cols=157 Identities=55% Similarity=0.918 Sum_probs=139.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
||+++|++|||||||++++++.....+.+|.++....+.+..+.+.+||+||++.+...+..++..+|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998666888999888888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....|+..+.......+.|+++++||+|+......+++.+.+.........++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999988877665678999999999999876666677776665544556778999999999999999999875
No 45
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4e-33 Score=193.94 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=127.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|+.|+|||||++++.++.+.+ +.||++.+. ..+... .+.+.+||++|+++++.++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999999887 899998555 345553 478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|++++.+|+.+..|+..+.... ....| ++|+||+|+..... .+.+. .......+..+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999887653 24567 67899999963211 11111 1111222334467999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++++.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 46
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-33 Score=180.29 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=136.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...|++++|...+|||||+.++.+..|.. ...|.|++.+.-.+ +.+++++|||+|+++++.+.-.|+++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 44699999999999999999999999988 88888866654444 66899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+||+++.+||..+..|...+... ...+.|+|+|+||||+.+++. ...+.++++. .+|++||+.+.|
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Nin 170 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENIN 170 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhccccccc
Confidence 99999999999999999988665 557999999999999987542 2344555554 499999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 030122 166 LFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~s 182 (182)
++++|+.++..+.+.+|
T Consensus 171 Vk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 171 VKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
No 47
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=7.1e-33 Score=190.23 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=129.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++..+.+.. +.+|.+.......+ ..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 489999999999999999999888766 88888866655544 4578999999999999989999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..+.... .++|+++|+||+|+.......+.. . ..+...+.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999987664 389999999999997432212211 1 11335567999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+++.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99988753
No 48
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=1.3e-32 Score=192.80 Aligned_cols=161 Identities=32% Similarity=0.567 Sum_probs=138.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+..||+++|++|||||||++++.+..+..+.||.+.....+.+.+..+.+||+||++.++..|..+++++|++++|+|++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECC
Confidence 46899999999999999999999888866888888877788888899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-----------CCCceEEEEecccCCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-----------KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~ 164 (182)
+.++++....|+..+.......+.|+++++||+|+......+++.+.+..... ..+.+.+++|||++|+
T Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 177 (190)
T cd00879 98 DPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ 177 (190)
T ss_pred cHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCC
Confidence 99999988899998887655578999999999999876666677666654322 1245779999999999
Q ss_pred CHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~i~~~~~~l~~~ 176 (182)
|++++|+|+.+.
T Consensus 178 gv~e~~~~l~~~ 189 (190)
T cd00879 178 GYGEAFRWLSQY 189 (190)
T ss_pred ChHHHHHHHHhh
Confidence 999999999865
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=195.14 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=128.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|||||||++++.++.+.. +.||.+... ..+.+ ..+.+.+|||+|++++..++..+++++|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 35899999999999999999999988876 778877333 33344 456788999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++++|+.+..|+..+.......+.|+++|+||+|+.+... ..+.. .+ .+....+++++||++|.|++++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ-EL----AKSFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHhCCEEEEeeCCCCCCHHHH
Confidence 99999999999999999887665456899999999999865322 11111 11 1122357999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++++.+.+
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.3e-33 Score=191.80 Aligned_cols=156 Identities=22% Similarity=0.341 Sum_probs=127.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||+++++++.+.. +.+|.+.... .+.. ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999999877 8888885543 3444 4688999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCC----CCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEEL----KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|++++++++.+..|+..+...... .+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-W----AESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCH
Confidence 999999999999999988765432 579999999999997422 2222211 1 1223356999999999999
Q ss_pred HHHHHHHHHHHh
Q 030122 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~~~~~l~~~i~ 178 (182)
+++|+++++.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 51
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.9e-33 Score=189.49 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=125.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+. ....+.+ ..+.+.+||++|+++++.++..++++++++++|||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999988866 7777763 2333444 34668899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++..+|+.+..|+..+.+.....+.|+++|+||+|+..... ..+..... +..+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999998887765556899999999999875321 12221111 223456999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+++.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98764
No 52
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.6e-33 Score=194.98 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=126.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||+++|.++.+.. +.||.+.... .+.. ..+.+.+||++|++.++.++..++.++|++|+|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999999877 7888874432 3333 347899999999999999999999999999999999
Q ss_pred CCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHH---------HhhcccccCC-CceEEEEecccCC
Q 030122 95 SDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS---------EALELHKIKN-RQWAIFKTCAIKG 163 (182)
Q Consensus 95 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~Sa~~~ 163 (182)
+++++|+.+. .|+..+.... .+.|+++|+||+|+.......+.. ...+....+. ..++++++||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999886 5877776543 589999999999997643322111 1111112222 3367999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|.++++.+...
T Consensus 160 ~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 160 RGVNEAFTEAARVALNV 176 (189)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999988753
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=5.7e-33 Score=190.09 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=126.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|.+|+|||||++++.++.+.+ +.+|.+ +....+... .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998877 667765 444445543 457889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+|+.+..|+..+.......++|+++|+||+|+....... .....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999888776545789999999999986432211 1111211 12235799999999999999999
Q ss_pred HHHHHH
Q 030122 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~i 177 (182)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998764
No 54
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.3e-33 Score=189.61 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=125.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||++++.++.+.+ +.+|.+.+. ..+.+. .+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999999877 788888544 345553 478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999998886543 357999999999998754332 12222221 22235799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=7.4e-33 Score=190.82 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=127.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|||||||++++.++.+.. +.||++... ..+.+ ..+.+.+||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999877 889988544 33444 34789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
++++++++.+..|+..+++.....+.|+++|+||+|+.+.... ++....+ ......+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999998876544456789999999998653221 1111111 12233569999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.8e-32 Score=187.38 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=126.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.+ +.++.+... ..+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998877 666665433 23333 4578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+.... ..+. ..+ .....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999998886543 579999999999985321 1111 111 1223467999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+++.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999888764
No 57
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.9e-33 Score=194.98 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=125.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|.+|||||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+|||+|+++++.++..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999988877 77877732 233444 346789999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++++|+.+..|+..+..... ..+.|+++|+||+|+....... ..... .....+++++++||++|.|++++|.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA----LARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHH----HHHHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999888765432 2578999999999996532211 11111 1122345799999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
++++.+.+.
T Consensus 157 ~l~~~l~~~ 165 (190)
T cd04144 157 TLVRALRQQ 165 (190)
T ss_pred HHHHHHHHh
Confidence 999887643
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.4e-32 Score=193.89 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=128.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||+++|.+..+.. +.+|.+.+. ..+.+ ..+.+.+||++|++.++.++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 35899999999999999999999998876 788888544 44444 34688999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++|+.+..|+..+.... ...|+++|+||+|+...... ++... +. ...+++++++||++|.|+++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYK-FA----GQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCEEEEEECCCCcCHHH
Confidence 999999999999999999886643 67899999999999754322 22211 11 12235699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 59
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.1e-32 Score=189.49 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=129.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.+..+.+ +.+|.+... ..+.+ ..+.+.+||++|++++..++..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 4799999999999999999999999877 788888544 34444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+... .++..... +...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886642 36789999999999975432 22222211 223457999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++.+.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 60
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-33 Score=180.21 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=136.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
-..-+|++++|+.|+|||||+++|...++.+ ...|+|+.... +.+ +.++++||||+|+++|++..+.|++++.++
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3456799999999999999999999999988 88899955543 444 779999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
++|||++++++|..+..|+.++.... .+++-+++++||.|+.+.++..- .....++.+..+-++++|+++|+|+++
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~Vtf---lEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTF---LEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhH---HHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999986654 47889999999999987654322 222233344556699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
.|-...+.+..
T Consensus 162 aFl~c~~tIl~ 172 (214)
T KOG0086|consen 162 AFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHH
Confidence 99888877653
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-32 Score=188.49 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=126.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.+|.+ .....+.. ..+.+.+||+||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988876 666666 22333444 44788999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++++|+.+..|+..+.......+.|+++|+||+|+...... .+....+. +...++++++||++|.|++++|++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA----RQWGCPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH----HHcCCEEEEeecCCCCCHHHHHHH
Confidence 9999999999999888876655568999999999998753221 11111111 122367999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+++.+.+
T Consensus 157 l~~~~~~ 163 (164)
T smart00173 157 LVREIRK 163 (164)
T ss_pred HHHHHhh
Confidence 9988764
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=7.1e-33 Score=191.55 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=122.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|||||||+.++..+.+.. +.||.+.. ...+.. ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 4799999999999999999999998876 78887632 223334 4478999999999999999999999999999999
Q ss_pred eCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHh--------hcccccCCC-ceEEEEeccc
Q 030122 93 DSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEA--------LELHKIKNR-QWAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~-~~~~~~~Sa~ 161 (182)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+.+... .+.+... .+....+.. .++++++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 5777665543 5899999999999964321 1111111 111111222 2479999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~ 176 (182)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 63
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-32 Score=195.17 Aligned_cols=159 Identities=20% Similarity=0.311 Sum_probs=129.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||+++|.++.+.. ..+|++.+. ..+.+ ..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4799999999999999999999998877 678887544 33444 34789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++++|+.+..|+..+.........|+++|+||+|+...... .+....+ .+..+++++++||++|.|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999876644456899999999999764321 1112222 1223467999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 64
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.7e-32 Score=188.25 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=126.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.+. ..+.. ..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999999876 788887443 33333 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999998886543 35789999999999975432 22221111 1223469999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+++++.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987654
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.7e-32 Score=195.69 Aligned_cols=158 Identities=17% Similarity=0.184 Sum_probs=127.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||+++|.++.+.. +.||++.+. ..+.+ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998877 889988554 34444 258899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+...... .+....+ .+..+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999888876532 245789999999999643221 1111111 122335699999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++++.+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 66
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=6.8e-32 Score=186.46 Aligned_cols=163 Identities=43% Similarity=0.760 Sum_probs=141.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+....++|+++|++|||||||++++.+..+....+|.+++...+.+.+..+.+||++|+..+...+..+++++|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 33447899999999999999999999987766888888888888888899999999999998889999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|.++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+..+++++||++|+|++++|+|
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99999999888888888776655568999999999999876667777777776666666677899999999999999999
Q ss_pred HHH
Q 030122 173 LSN 175 (182)
Q Consensus 173 l~~ 175 (182)
|++
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 975
No 67
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.5e-32 Score=195.56 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=125.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++|.++.+.. +.||++..+. .+.+ ..+.+.+|||+|++.|..+++.++.++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 699999999999999999999999887 8899884432 3444 56789999999999999999999999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HH--------HHHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++++|+.+.. |...+... ..+.|+++|+||+|+.+.... .+ +....+....+..+ ++|++|||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999965 55444333 368999999999999653210 11 11222222233334 4899999999
Q ss_pred CCC-HHHHHHHHHHHHhcC
Q 030122 163 GEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~-i~~~~~~l~~~i~~~ 180 (182)
+.+ ++++|..++.+....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999999876653
No 68
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=7.4e-32 Score=185.22 Aligned_cols=157 Identities=35% Similarity=0.644 Sum_probs=131.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------cc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+|+++|++|||||||++++.+... .. +.+|.+.....+.+.+..+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999986422 22 67888888888888899999999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc--cCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|+++++++.....|+..+.+.....++|+++++||+|+......+++...+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999999999999998887765557899999999999977655555544443321 2335678999999999999999
Q ss_pred HHHHHH
Q 030122 170 MDWLSN 175 (182)
Q Consensus 170 ~~~l~~ 175 (182)
++||.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 69
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-33 Score=189.32 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=136.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.-...+||++||++++|||-|+.|+..+.|.. ..+|+|+...+ +.+ +.++.+||||+||++|++....|++++.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 44567899999999999999999999999988 88999955554 444 77899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++|||+++..+|+.+..|+.+++.+.. +++++++|+||+|+...+. +..+.+.......+..++++||.++.|++
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lra---V~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRA---VPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccc---cchhhhHhHHHhcCceEEEecccccccHH
Confidence 9999999999999999999999987754 6999999999999976322 11222222223344569999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
..|..++..+..
T Consensus 166 ~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 166 KAFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 70
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.5e-32 Score=187.47 Aligned_cols=156 Identities=21% Similarity=0.287 Sum_probs=126.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|++++..++..+++++|++++||
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 799999999999999999999988876 677777433 34444 3468899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++|..+..|+..+.... ..+.|+++++||+|+..... .++... +. ...+++++++||++|.|++++|
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHHH
Confidence 9999999999999998886543 35789999999999865432 222211 11 2234579999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.++.+.+.+
T Consensus 157 ~~i~~~~~~ 165 (166)
T cd01869 157 MTMAREIKK 165 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.4e-32 Score=186.69 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=121.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++.++.+.. +.||.+... ..+.. ..+.+.+||++|++++..++..+++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999998866 677776322 22333 55789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
++++.+++.+..|+..+.... ...++|+++|+||+|+....... +....+ .....+.++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 999999999999887765432 22579999999999996532211 111111 12234569999999999999999
Q ss_pred HHHHH
Q 030122 171 DWLSN 175 (182)
Q Consensus 171 ~~l~~ 175 (182)
++|+.
T Consensus 158 ~~l~~ 162 (165)
T cd04140 158 QELLN 162 (165)
T ss_pred HHHHh
Confidence 99975
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.7e-32 Score=185.74 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=117.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
+||+++|++|||||||++++..+.+.+ +.|+.+.....+.+++ +.+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999988877 5555554445666654 7799999999975 2456789999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCC-CceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN-RQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++++||+.+..|+..+.......++|+++|+||+|+..... .++.........+. ..+.+++|||++|.||+++|.++
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~-~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNP-RVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCC-cccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999999997765556799999999999853111 11111111111112 34679999999999999999999
Q ss_pred HHH
Q 030122 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
++.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 865
No 73
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=174.92 Aligned_cols=166 Identities=31% Similarity=0.562 Sum_probs=156.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.++.+.++|..+||||||++....+.+.+ ..||.|++...+.-..+.+.+||.||+.+|+++|..|++.+++++||+|+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 35789999999999999999999999988 99999999999988999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
.+++.+.....-++.++..+...++|+++.+||.|++++-...++...+++....++++.+|.+|+++..|++.+..|++
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLI 178 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHH
Confidence 99999999999999999998889999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.-...+
T Consensus 179 ~hsk~~~ 185 (186)
T KOG0075|consen 179 EHSKSLR 185 (186)
T ss_pred HHhhhhc
Confidence 8766543
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=7.5e-32 Score=189.59 Aligned_cols=150 Identities=16% Similarity=0.258 Sum_probs=125.4
Q ss_pred EecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 23 FFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 23 iG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+|.+|||||||+++++++.+.. +.+|++.......+ ..+.+.+||++|+++|+.++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 6999999999999999988876 88999866654443 468999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+|+.+..|+..+.... .++|+++|+||+|+.... ..+.. ...+...+.+++|||++|.|++++|.++++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999887754 589999999999985422 11111 1123346789999999999999999999988
Q ss_pred HhcC
Q 030122 177 LKSG 180 (182)
Q Consensus 177 i~~~ 180 (182)
+...
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 7653
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=6.1e-32 Score=185.01 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=125.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|+|||||+++++++.+.. +.+|.+.. .....+ ..+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 3799999999999999999999888766 66776622 223334 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+|+.+..|+..+.......+.|+++++||+|+...... .+....+ .+..+++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL----ARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH----HHHcCCcEEEeeCCCCCCHHHHHH
Confidence 99999999999999988876544568999999999999754321 1111111 122335699999999999999999
Q ss_pred HHHHHH
Q 030122 172 WLSNTL 177 (182)
Q Consensus 172 ~l~~~i 177 (182)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04145 158 DLVRVI 163 (164)
T ss_pred HHHHhh
Confidence 998765
No 76
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=5e-31 Score=179.08 Aligned_cols=156 Identities=33% Similarity=0.601 Sum_probs=135.4
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
|+++|++|||||||++++.+..+.. +.||.++....+....+.+.+||++|++.++.++..++..+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999998877 889999887777777899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.....|+..+.......++|+++|+||+|+.+.....++...+.........++++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 99988888888876655578999999999999876555555555555544455678999999999999999999865
No 77
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=179.57 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=133.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+.+++|++|+|||+|+.+|..+.|.. +..|+| +.+.++.+ ..++++|||++|+++|+.+...|++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 477899999999999999999999988 999999 44555555 6789999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|+++.+||.....|++++.... ...|-++|+||+|.++..-. ....+..++...++.+|++|++.++|++..|.-
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV---~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVV---DTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceee---ehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 9999999999999999997765 68999999999999864322 222223334456677999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
|.+++.+
T Consensus 164 it~qvl~ 170 (198)
T KOG0079|consen 164 ITKQVLQ 170 (198)
T ss_pred HHHHHHH
Confidence 9887654
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.9e-31 Score=182.86 Aligned_cols=158 Identities=13% Similarity=0.225 Sum_probs=126.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++.++.+.+ +.++.+... ..+.+ ..+.+.+||++|+++++.++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999988877 677877543 34444 45788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|||++++++++.+..|...+..... ..++|+++|+||+|+... ...+++.+.... ....+++++||++|.|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNV 159 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCH
Confidence 9999999999999999988765432 256899999999998632 222333222111 11236999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
.++|+++++.+
T Consensus 160 ~~~~~~~~~~~ 170 (170)
T cd04116 160 AAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 79
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.4e-31 Score=191.01 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=131.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+...+||+++|++|||||||+++|.+..+.. +.+|.+.+. ..+.+ ..+.+.+||++|++++..++..++++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 3456899999999999999999999988875 778888554 44444 347899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...... .+....+. ....++++++||++|.|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVE 163 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999998876543 357999999999998654332 22222222 2245679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++++.+.+
T Consensus 164 ~lf~~l~~~i~~ 175 (216)
T PLN03110 164 KAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=6.5e-32 Score=184.49 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. ..++.+.... .+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999998866 6777764433 3344 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.++..+..|+..+.... ..++|+++++||+|+..... .++..... +..++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988875442 36899999999999975322 22222221 1223679999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 81
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.5e-31 Score=189.22 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=128.8
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
.+.+....+||+++|++|+|||||+++|.+..+..+.++.+... ..+.+ ..+.+.+||+||++++..++..+++.+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 33444557899999999999999999999988877888887544 34444 347889999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHH-HHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHA-ILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
|++++|||++++++|+.+..++.. +.......+.|+++|+||+|+...... ++.. .+ .....++++++||++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM-AL----AKEHGCLFLECSAKT 161 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HH----HHHcCCEEEEEeCCC
Confidence 999999999999999999874443 333333357899999999999754322 2211 11 122345799999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030122 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~ 180 (182)
|.|++++|+++.+.+...
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 162 RENVEQCFEELALKIMEV 179 (211)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887643
No 82
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=1.7e-31 Score=183.75 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=127.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
-+||+++|++|+|||||++++.++.+.. ..+|.+.+. ..+.. ....+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999988776 667776443 33444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.... .++.|+++|+||.|+.... ..++..... ....+.++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999886653 3689999999999987432 222322221 123456999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=9.2e-32 Score=188.08 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||+++|.++.+.. +.||.+.... .+.. ..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876 7777764432 2333 3578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCC------HHHHHHhhcccccCCCce-EEEEecccCCC
Q 030122 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD------DAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
|++++++|+.+.. |+..+.... .+.|+++|+||+|+..... .++.. .+ ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAE-SV----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHH-HH----HHHcCCcEEEEccCCCCC
Confidence 9999999999864 777665432 5799999999999865321 11111 11 112223 69999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|.++++.+...
T Consensus 154 ~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 154 NVEEVFDTAIEEALKK 169 (187)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999887753
No 84
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1.5e-31 Score=187.20 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=127.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 489999999999999999999999877 788888433 34444 3578899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ...+++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999998886543 246899999999998753321 11111111 12345799999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++++.+..
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99998764
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=8.2e-31 Score=189.86 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=127.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++++++.+.. +.||++ +....+.+. .+.+.+|||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999998876 788886 444455553 4788999999999999988888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhcc--------CCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 94 SSDTDRIQTAKEEFHAILEEE--------ELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++++++|+.+..|+..+.... ...++|+++|+||+|+... ...+++.+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999999998887542 2357999999999999742 233444433321 12457999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 86
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.98 E-value=1.2e-31 Score=184.85 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=127.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCCh-hhhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIR-PYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||++++.++.+.. +.+|.+... ..+.+ ..+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988876 778877443 34444 34789999999999887 578889999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccC---CCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 166 (182)
|||++++++|+.+..|+..+.......++|+++|+||+|+...... .+....+. +...++++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999988876654568999999999998754331 22222222 22346799999999 9999
Q ss_pred HHHHHHHHHHHh
Q 030122 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~~~~~l~~~i~ 178 (182)
+++|.++++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 87
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=2.1e-31 Score=187.16 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=124.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|+|||||+++|.++.+.. +.+|++..+ ..+.+ ..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 778887433 34555 346788999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||++++.+|+.+..|+..+.... .+.|+++|+||+|+..... ...+.............++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999988886643 5799999999999864321 10110000001112234569999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+++.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987754
No 88
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.1e-31 Score=182.69 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=125.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|||||||++++.++.+.. ..||.+... ..+... .+.+.+||++|++++..++..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 3799999999999999999999998876 778887544 344443 36899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.... ..++|+++|+||+|+..... .++..... ....++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998886654 24689999999999875432 22222221 123457999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 89
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.98 E-value=5.1e-32 Score=185.15 Aligned_cols=154 Identities=22% Similarity=0.315 Sum_probs=128.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEE--Ee--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETV--QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|||||||+++|.++.+.+ +.+|.+.+.... .+ ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999888 888887555444 33 56789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC--CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++++||+.+..|+..+..... .+.|+++++||.|+.+ ....++..... +..+++|+++|++++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999877653 4799999999999876 22333222111 22236799999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
.+++.++
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 90
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=3.3e-31 Score=182.29 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=126.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
++||+++|++|||||||++++.++.+.. +.+|.+ .....+.+ ..+.+.+||++|++++..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3799999999999999999999988866 677776 22334444 3478899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|.+++++++.+..|...+.......+.|+++++||+|+.+.... ++.. .+.. ....++++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~-~~~~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV-SLSQ---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH-HHHH---HcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999999888876544568999999999998754321 1211 1111 1123679999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
.+++..+.
T Consensus 157 ~~i~~~~~ 164 (168)
T cd04177 157 IDLVRQII 164 (168)
T ss_pred HHHHHHHh
Confidence 99997654
No 91
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=6.6e-31 Score=180.26 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=124.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.+|.+. ....+.+.+ +.+.+||+||++++..++..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988877 6677764 344555544 6889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+..... ..+...... ......++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHHH
Confidence 99999999999999999886543 36799999999999975432 122211111 112235899999999999999
Q ss_pred HHHHHHH
Q 030122 170 MDWLSNT 176 (182)
Q Consensus 170 ~~~l~~~ 176 (182)
|+++.+.
T Consensus 158 ~~~l~~~ 164 (165)
T cd01864 158 FLLMATE 164 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 92
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=2.2e-31 Score=186.76 Aligned_cols=157 Identities=20% Similarity=0.325 Sum_probs=126.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+||+++|++|||||||++++.++.+.. +.+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988753 6777774443 3444 347899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|++++++|+.+..|+..+.... ..++|+++|+||+|+.... ..++... +. ....++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999998887653 3578999999999996432 2222221 11 122357999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|.++++.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 93
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=1.4e-31 Score=182.94 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=123.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.+.. .+.+ ..+.+++||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988876 7788875543 3333 35789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++|+.+..|+..+.... .++|+++|+||+|+..... .++..... +..+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999999988876543 6899999999999865322 22222111 12235699999999999999
Q ss_pred HHHHHHHH
Q 030122 169 GMDWLSNT 176 (182)
Q Consensus 169 ~~~~l~~~ 176 (182)
+|+++...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998754
No 94
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=2.7e-31 Score=183.59 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=121.6
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|+++|++|||||||++++.++.+.. +.++.+... ..+.+ ..+.+.+|||+|++.+..++..+++++|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 6899999999999999999999876 667765322 23334 3467999999999999999999999999999999999
Q ss_pred CcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHH--------HHhhcccccCCCc-eEEEEecccCCC
Q 030122 96 DTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAV--------SEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
++++|+.+. .|+..+.... +++|+++|+||+|+...... +++ .........+..+ ..++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 5777776543 68999999999999753211 111 0111111122223 379999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988764
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.1e-30 Score=183.73 Aligned_cols=160 Identities=17% Similarity=0.059 Sum_probs=122.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
+||+++|.+|||||||++++.++.+.. +.||.+... ..+.+.+ +.+.+|||+|...+.. ....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999877 788876332 3444544 7889999999765421 12345789
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEeccc
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+|++|+|||++++++|+.+..|+..+.... ...++|+++|+||+|+...... .+....+. .+...++++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999999988887653 2467999999999999654221 11111111 11235679999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|..+++.+..+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999877644
No 96
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=4e-31 Score=180.90 Aligned_cols=157 Identities=18% Similarity=0.302 Sum_probs=126.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..++.+... ..+.+. .+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 667777443 344443 378999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++.+++.+..|+..+..... .++|+++++||+|+.... ..+.... +. +..+++++++|+++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888766542 589999999999987532 2222222 21 2234569999999999999999
Q ss_pred HHHHHHHhcC
Q 030122 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~l~~~i~~~ 180 (182)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988653
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=1.9e-30 Score=177.22 Aligned_cols=154 Identities=17% Similarity=0.235 Sum_probs=126.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..++.+... ..+.+ ..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 777777443 33444 3478999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++... +. ....++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999998888776656789999999999997332 2222221 11 22356799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
++.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
No 98
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.7e-30 Score=176.29 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=123.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc-c-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV-S-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~-~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
.-+||+++|.+|||||||++++.++.+. . +.||.+.. ...+.+. .+.+.+||++|++.+..++..+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 3479999999999999999999999987 5 88888843 3455553 378899999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+... .+++.+.++. ..++++||++|.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~ 152 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLGD 152 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccCc
Confidence 99999999999999888876532 24799999999999864321 1233322221 126899999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+.+++.+.+
T Consensus 153 ~v~~lf~~l~~~~~~ 167 (169)
T cd01892 153 SSNELFTKLATAAQY 167 (169)
T ss_pred cHHHHHHHHHHHhhC
Confidence 999999999988764
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=7.3e-31 Score=179.78 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=123.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+||+++|++|||||||++++..+ .+.+ +.+|.+.+. ..+.+ ..+.+.+||++|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4555 788887554 33333 4589999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-HHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+...... ..+.+. ....++++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999999998876653 5799999999999965432211 111111 12235699999999999999
Q ss_pred HHHHHHHHH
Q 030122 169 GMDWLSNTL 177 (182)
Q Consensus 169 ~~~~l~~~i 177 (182)
+|+++.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
No 100
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=4.9e-30 Score=175.47 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=127.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
++||+++|++|||||||++++.++.+.. ..++.+. ....+.+ ..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 3799999999999999999999999877 7777773 3344555 457899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|++++++++....|+..+..... .+.|+++++||+|+.... ..++..... ....++++++||++|.|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 999999999999999998876643 679999999999987432 223322221 112357999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
No 101
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9.2e-31 Score=178.71 Aligned_cols=154 Identities=17% Similarity=0.254 Sum_probs=123.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.||+++|++|||||||++++.+..+.. +.++.+.+ ...+.+. .+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 389999999999999999999998876 67777644 3445453 367999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++++|+.+..|+..+..... .+.|+++++||+|+..... ..+....+. +...+.++++||+++.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876532 3799999999999954322 111111111 12336799999999999999999
Q ss_pred HHHHH
Q 030122 172 WLSNT 176 (182)
Q Consensus 172 ~l~~~ 176 (182)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.9e-30 Score=176.47 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=125.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..+|.+.+. ..+.+ ..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 489999999999999999999988766 667766433 34444 3467889999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
|++++.+++....|...++.... ..++|+++|+||+|+..+. ..++...... .....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999999999888877665432 2479999999999997422 2333322221 1123579999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
++|+++.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877654
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=184.86 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=127.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.+||+++|++|+|||||++++.+..+.. +.+|++.+. ..+.+ ..+.+.+||++|++.+..++..++..+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988877 777887543 34444 346789999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+|+.+..|+..+.... ..+.|+++++||+|+.... ..++..... +...++++++||+++.|++++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999988875543 3579999999999997532 222222211 223457999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|.++++.+.+
T Consensus 160 f~~l~~~~~~ 169 (210)
T PLN03108 160 FIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 104
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-31 Score=170.03 Aligned_cols=167 Identities=58% Similarity=0.897 Sum_probs=156.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
.++.+|+++|..|+||||+..++.-+......||++++...+.+++.++++||.+|+-..++.|+.|+++.|++|||+|.
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDs 95 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDS 95 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEec
Confidence 37789999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++.+++......+..+++...+.+..+++++||.|........++...+++...+++.+.++++||.+|+|++..++|+.
T Consensus 96 sd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 96 SDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred cchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHH
Confidence 99999988888888888888888999999999999998878889999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 176 ~~l~~~~ 182 (182)
T KOG0072|consen 176 RPLKSRQ 182 (182)
T ss_pred HHHhccC
Confidence 9988753
No 105
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.7e-30 Score=179.68 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=120.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+ .....+.+ ..+.+.+||++|++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999998876 667765 22233444 34668899999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-H--------HHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++.+|+.+. .|+..+... ..+.|+++++||+|+.+.....+ + ....+....+..+ ..++++||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999886 466665443 47899999999999865322111 0 0000111111222 3699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 106
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.3e-30 Score=180.17 Aligned_cols=156 Identities=13% Similarity=0.099 Sum_probs=117.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.+|.. .....+.. ..+.+.+||++|++++..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888876 677653 22223444 34788999999999999999999999999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---------HHHHHhhcccccCCCc-eEEEEecccC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD---------AAVSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++++|+.+. .|+..+.... .+.|+++++||+|+...... ..+.........+..+ ..++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999885 5777765432 57999999999998643210 0000001111112222 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSN 175 (182)
Q Consensus 163 ~~~i~~~~~~l~~ 175 (182)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 107
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=172.69 Aligned_cols=160 Identities=19% Similarity=0.261 Sum_probs=132.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
..+|.++||+.-+|||||++.+..+++.+ ..||+|++. ..+.. ..+++++|||+|+++|++....|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46799999999999999999999999999 999999444 33333 5689999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|||++|.+||+-+..|+.+...... ..++-+++|++|+|+...+.. ..+.+....+..++.+++||+++|.|+++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 99999999999999999988765543 355677899999999865433 22222223345666799999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
.|.-+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=8.2e-30 Score=179.75 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=126.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||+++++++.+.. +.+|.+ .....+.+.+ +.+.+||++|+..+..++..++..+|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988877 666665 4444555544 7899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+++.+++.+..|+..+.......++|+++|+||+|+..... ..+..+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999998888776556899999999999865311 111111111 12234689999999999999999
Q ss_pred HHHHHHh
Q 030122 172 WLSNTLK 178 (182)
Q Consensus 172 ~l~~~i~ 178 (182)
++++.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998765
No 109
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=3.5e-30 Score=175.75 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=123.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|+|||||+++++++.+.+ ..++.+ +....+.+ ..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988866 555554 33334444 3467999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++++.+..|+..+..... .++|+++++||+|+..... .+++.... +...+.++++|++++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999888866543 3799999999999975432 22222221 1234568999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 110
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.7e-30 Score=181.27 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=114.7
Q ss_pred eeEEEEEecCCCChHHHHH-HhhcCCC-----cc-ccCCCce-eeE--E----------EEeCCEEEEEEECCCCCCChh
Q 030122 17 HVLGFSFFIDNFGNLCDTD-RLQMGEV-----VS-TIPTIGF-NVE--T----------VQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~-~l~~~~~-----~~-~~~t~~~-~~~--~----------~~~~~~~~~i~d~~g~~~~~~ 76 (182)
.+||+++|++|+|||||+. ++.++.+ .. +.||++. +.. . +....+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 6655433 33 6788752 211 1 112468999999999875 3
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----------------HHHH
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----------------~~~~ 139 (182)
+...+++++|++|+|||++++.||+.+. .|+..+.... .+.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4566889999999999999999999997 5877775543 5789999999999864210 0112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
....+...++..+++|++|||++|.|++++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222233334455689999999999999999999875
No 111
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.5e-30 Score=177.42 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=118.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCC-hhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSI-RPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|+|||||+++++++.+.. +.+|.+ .....+.+ ..+.+.+||+||++++ ...+..+++.+|++|+|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999888765 667664 22333444 4567899999999863 4556778899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCC-CCHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKG-EGLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~ 169 (182)
++++.+|+.+..|+..+..... ..+.|+++|+||+|+..... .++. ..+ .+...++++++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG-EKL----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH-HHH----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999998887766432 45899999999999864322 1211 111 1222357999999999 599999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|.++++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 112
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.6e-29 Score=171.87 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=126.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||++++++..+.. +.++.+... ..... ..+.+.+||++|++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 489999999999999999999988876 666665222 22233 45789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
++++.+|..+..|+..+.......++|+++|+||+|+... ....+... +. ....++++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN-LA----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH-HH----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999999887655578999999999999762 22222111 11 11235699999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.6e-29 Score=173.67 Aligned_cols=158 Identities=9% Similarity=0.004 Sum_probs=117.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
+||+++|.+|||||||+++|.++.+.. +.++.........+ ..+.+.+||++|++.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999998866 33333221222223 568899999999998888888888999999999999
Q ss_pred CCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 95 SDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 95 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++.+|+.+. .|+..+.... .+.|+++|+||+|+.+..... +....+. .... ...+++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NEFR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHH-HHHh-cccEEEEeccccccCHHHHH
Confidence 9999999986 4656554433 489999999999997654321 1111110 0001 11269999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988754
No 114
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.4e-30 Score=182.59 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=120.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc-c-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCC-CCCEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV-S-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTEAVIY 90 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~-~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~~i~ 90 (182)
+||+++|++|+|||||+++|.++.+. . +.++.+ +....+.+ ....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999988875 3 667764 44455555 55789999999998 233344556 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999988877654568999999999998654321 1111111 1223456999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|+++++.+.
T Consensus 155 ~~~l~~~~~ 163 (221)
T cd04148 155 LEGIVRQIR 163 (221)
T ss_pred HHHHHHHHH
Confidence 999998886
No 115
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=164.29 Aligned_cols=166 Identities=36% Similarity=0.626 Sum_probs=154.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.++.+++||+++|..++|||||+.+|.+.+.....||.|++...+.+ ..+++++||++|+...++.|..||.+.|++||
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 45678999999999999999999999998888899999999999999 55999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|+|.++...|+++...+.+++.......+|+++.+||.|+......+++...+.+...+.+...+-++|+.+++|+.+-.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 99999999999999999999988888999999999999998888888999889888888999999999999999999999
Q ss_pred HHHHHHH
Q 030122 171 DWLSNTL 177 (182)
Q Consensus 171 ~~l~~~i 177 (182)
+|+..-.
T Consensus 172 ~wv~sn~ 178 (185)
T KOG0074|consen 172 DWVQSNP 178 (185)
T ss_pred hhhhcCC
Confidence 9987644
No 116
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.8e-29 Score=173.71 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=120.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|||||||++++.++.+.. +.||.+.. ...+.+ ..+.+.+|||+|++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 589999999999999999999998877 77887733 234444 45688999999999999888888999999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHH--------hhcccccCC-CceEEEEecccC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKN-RQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~--------~~~~~~~~~-~~~~~~~~Sa~~ 162 (182)
++++++|+.+.. |...+... ..+.|+++|+||+|+...... +++.. ..+....+. ....+++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988864 66666543 258999999999998653221 11110 000001111 234799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
No 117
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-32 Score=176.59 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=135.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe-----------CCEEEEEEECCCCCCChhhhhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-----------~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
.-+|.+.+|++|+||||++.++..++|.. -..|+|++. +.+.+ ..+.+++|||+|+++|+++.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 44688999999999999999999999988 777888554 44444 34799999999999999999999
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++.+-+++++||+++..||-.+.+|+.++.......+..+++++||+|+.+-+ .+.+......+...++|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHHHhCCCeeeeccc
Confidence 99999999999999999999999999999888877899999999999998643 233333333345567779999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|+++..+.++..+.+
T Consensus 165 tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMK 182 (219)
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999888877653
No 118
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=8.9e-29 Score=176.58 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=131.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+...+||+++|++|||||||+++++.+.+.. +.+|.+.......+ ..+.+.+||++|++++..++..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34456899999999999999999998888876 88999976665544 56899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++|||+++..+|..+..|+..+.... .++|+++++||+|+.+.....+.... .....+.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999998887553 57999999999998643221121111 12234569999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
+.|.++++.+...
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988653
No 119
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=169.59 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=133.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+.-.+||+++|..-+|||||+-|++.++|.. ...|+. +..+.+.+ ....+.||||+|+++|..+-+.|+++++
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 456667899999999999999999999999877 555554 44555555 4568999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|||+++.+||+.+..|..++.... ...+-+++|+||+|+.+.+.. ...........-+..|+++||+++.||
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi 163 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGI 163 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCH
Confidence 9999999999999999999999997654 367899999999999764332 111111122333445999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
.++|+.+...+.+.
T Consensus 164 ~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 164 SELFESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877654
No 120
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=5.3e-29 Score=169.00 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=124.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||++++.+..+.. ..+|.+.......+ ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999999887 67787755554433 3578999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC--CCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP--GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|++++++++.+..|+..+.... ..+.|+++++||+|+. .....+++.+... ...++++++|++++.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999988886653 2579999999999996 2223333333222 245679999999999999999
Q ss_pred HHHH
Q 030122 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
+++.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=6.6e-29 Score=170.87 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=124.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+|+++|++|||||||++++.++.+.+ ..+|.+. ....+.+.+ +.+.+||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 35799999999999999999999887766 6777763 333445543 678999999999999998999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...... .+....+. +....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 999999999999999987775432 357999999999998754332 22222222 112356999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998765
No 122
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=4.7e-29 Score=171.82 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=116.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+||+++|++|||||||+++|.++.+.. +.++... ....+.. ..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999998854 5555542 2222233 46789999999999988888888899999999999
Q ss_pred CCCcchHHHHHH-HHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH--------HHHhhcccccCCCc-eEEEEecccCC
Q 030122 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDAA--------VSEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
++++.+|..... |+..+.... .+.|+++|+||+|+........ +............+ .+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999887765 555554433 4899999999999976543211 11111111222222 37999999999
Q ss_pred CCHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSN 175 (182)
Q Consensus 164 ~~i~~~~~~l~~ 175 (182)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 123
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=2.6e-28 Score=169.66 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=127.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. +.||.+. ....+.+. .+.+.+||+||+++++..+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888766 6676652 23444453 4668999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
.++..+++.+..|+..+.......+.|+++++||+|+.... ..++..... .....+++++||+++.|+.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876555788999999999987432 222222111 12235799999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
++.+.+...
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887643
No 124
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=6e-29 Score=169.32 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=123.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
||+++|++|||||||++++++..+.. +.++.+ .....+.+. .+.+.+||+||++.+..++..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887766 666665 333334443 57899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++++++.+..|+..+.........|+++++||+|+..... .++..... +....+++++|++++.|++++|++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHH
Confidence 99999999999998887765446899999999999976322 12222111 122257999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=5e-28 Score=170.18 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe-------CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+||+++|++|+|||||++++.++.+.+ +.+|++.. ...+.+ ..+.+.+||++|+++++.++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999877 88898833 334444 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc------------------CCCCCeEEEEeeCCCCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE------------------ELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~i~v~nK~D~~~~ 133 (182)
+|+|||+++++||+.+..|+..+.... ...++|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999999987532 1246899999999999654
No 126
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.7e-28 Score=171.45 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=136.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|.+|+|||+|..++..+.|.+ +.||++ .+...+.+ ..+.+.|+||+|++.+..+...++.++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 35799999999999999999999999999 899998 44555555 567889999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|+++++.||+.+..++..+.......++|+++|+||+|+...+.. ....+........++++++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V---~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQV---SEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcccc---CHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666677899999999999874322 11112222455667799999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
.+++.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
No 127
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.5e-28 Score=170.78 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=118.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.||+++|++|+|||||++++..+.+.+ +.+|.... ...+.. ..+.+.+||++|++.+......+++.+|++++|||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999877766 66665522 223343 34678999999999888777778899999999999
Q ss_pred CCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-------HHHHhhcccccCCC-ceEEEEecccCCC
Q 030122 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA-------AVSEALELHKIKNR-QWAIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 164 (182)
+++.++|+.+. .|+..+.... .+.|+++|+||+|+....... .+.........+.. ..+++++||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999997 5777776543 579999999999985421100 00000011111222 2369999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+..
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999976653
No 128
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=8.2e-31 Score=166.24 Aligned_cols=150 Identities=20% Similarity=0.316 Sum_probs=126.5
Q ss_pred EEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++|++++|||||+-|+..+.|-. ..+|+|+++.. +.. .++++++|||+||++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999999888866 67788866554 333 6789999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+..||+.+..|+.++.++. ...+.+.+++||||+..++- .+.+.+. .++|++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~--------y~ipfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEA--------YGIPFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHH--------HCCCceeccccccccHhHHH
Confidence 9999999999999997764 35788999999999965321 1233333 45569999999999999999
Q ss_pred HHHHHHHhcC
Q 030122 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~l~~~i~~~ 180 (182)
-.|.+.+++.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999888754
No 129
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-28 Score=155.76 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=133.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+-..-+|-++||+-|+|||||+++|...+|.. ...|+|+... .+.+ +++++++|||+|+++|+...+.|++++.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34456799999999999999999999999887 8888884433 3333 88999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++|||++.++++..+..|+.+..... .++..+++++||.|+...++. .+..+ .+..+.+..++++|+++|.++
T Consensus 87 almvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak----~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAK----EFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHH----HHHhhcCeEEEEecccccCcH
Confidence 999999999999999999998876553 367889999999999764432 12222 233455667999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
++.|-...+.+.+
T Consensus 162 edafle~akkiyq 174 (215)
T KOG0097|consen 162 EDAFLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
No 130
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-28 Score=161.07 Aligned_cols=165 Identities=33% Similarity=0.602 Sum_probs=146.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCC------C--ccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGE------V--VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
..+.|+++|+.++|||||+.+..... . ....+|.|.+..++.+....+.+||.+|++..+++|..||..+|+
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ 95 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHG 95 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhce
Confidence 35789999999999999999876422 1 227889999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-ccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-KIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i 166 (182)
+|+++|++++++|+.....++.+.......++|+++.+||.|+.+.....++...+++. ....+..++..+||.+|+|+
T Consensus 96 ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076|consen 96 IIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred eEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccH
Confidence 99999999999999999999999888888999999999999999988888887777742 23457788999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
++...|++..+..+
T Consensus 176 ~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 176 KEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988765
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=2.2e-26 Score=158.08 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=109.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCC----h-----hhhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI----R-----PYWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~-----~~~~~~~~~~~ 86 (182)
+|+++|.+|+|||||+++|.+..+.. ..+|.++....+.+.+..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 79999999999999999999887643 233555666666667789999999997421 1 00111122368
Q ss_pred EEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.......+.. .+ .+....+++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIE-EE----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHH-Hh----hhhccCceEEEEecccC
Confidence 9999999998765 356667777765432 489999999999997543322211 11 12245679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~i~~~~~~l~~~i 177 (182)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=1.8e-26 Score=158.87 Aligned_cols=155 Identities=19% Similarity=0.111 Sum_probs=110.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCE-EEEEEECCCCCC----Chhhhhhh---CCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWRCY---FPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~----~~~~~~~~---~~~~~~ 87 (182)
+|+++|.+|||||||+++|.+..... ..+|.......+.+.+. .+.+|||||... .+.+...+ +..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999999765421 22344444445555554 999999999632 22222333 346999
Q ss_pred EEEEEeCCCc-chHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDT-DRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++ ++++.+..|...+..... ..++|+++|+||+|+.+.....+....+.. .....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999999 789988888887765432 247899999999999764443332222211 11345699999999999
Q ss_pred HHHHHHHHHHH
Q 030122 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 i~~~~~~l~~~ 176 (182)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 133
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=3.1e-26 Score=168.80 Aligned_cols=123 Identities=18% Similarity=0.315 Sum_probs=105.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe---------------CCEEEEEEECCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY---------------NNIKFQVWDLGGQT 72 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---------------~~~~~~i~d~~g~~ 72 (182)
..++...+||+++|+.|||||||+++|.++.+.. +.+|+|... ..+.+ ..+.+.|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 4678888999999999999999999999998877 789998543 44444 24779999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC-----------CCCCeEEEEeeCCCCCCC
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-----------LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~i~v~nK~D~~~~ 133 (182)
+|+.++..++++++++|+|||++++.+|+.+..|+..+..... ..++|++||+||+|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999999876521 135899999999999653
No 134
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=3.4e-26 Score=156.98 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=127.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+|++++|+.++|||+|+..+..+.|.. +.||+- -+...+.+ +.+.+.+|||+||+.|..+++..+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999988 888886 11122233 46789999999999999998889999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHH--------HhhcccccCC-CceEEEEec
Q 030122 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVS--------EALELHKIKN-RQWAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~--------~~~~~~~~~~-~~~~~~~~S 159 (182)
||++.++.||+.+. +|+.++.... ++.|+++|++|.|+.++... +.+. ...+....+. ....|+++|
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999875 6888887665 89999999999999853211 1111 1111111122 336799999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
|++..|++++|+..++....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999988765
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.1e-25 Score=153.79 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=103.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC---Ccc---ccCCCceeeEEEEeC-CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE---VVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.|+++|.+|||||||+++|.+.. +.. ...|.+.....+.+. +..+.+|||||++++......++.++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999999643 222 233444555555554 78999999999998877777778899999999
Q ss_pred EeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 92 VDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 92 ~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|+++ +.+.+.+. .+ ... ...|+++++||+|+...... +++.+.+... .....+++++||++|.
T Consensus 82 ~d~~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 82 VAADEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGE 152 (164)
T ss_pred EECCCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCc
Confidence 99986 23332221 11 111 22499999999999753211 2222222211 0134679999999999
Q ss_pred CHHHHHHHHHH
Q 030122 165 GLFEGMDWLSN 175 (182)
Q Consensus 165 ~i~~~~~~l~~ 175 (182)
|++++++++.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998764
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=3.8e-25 Score=166.14 Aligned_cols=159 Identities=17% Similarity=0.131 Sum_probs=118.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEe-CCEEEEEEECCCCCC-------ChhhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++.+.... . ...|..+....+.+ ....+.+||+||... ....+..+++.+++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 5999999999999999999976533 2 34566677777777 567899999999642 12233445678999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCCHHH-HHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|+++.++++....|..++..... ..++|+++|+||+|+.+.....+ ....+ ......+++++||++++|
T Consensus 240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGEG 315 (335)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCCC
Confidence 9999999988889999888888765432 35789999999999975432221 11111 112235699999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 030122 166 LFEGMDWLSNTLKSGG 181 (182)
Q Consensus 166 i~~~~~~l~~~i~~~~ 181 (182)
++++++++.+.+.+.+
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
No 137
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.6e-25 Score=151.97 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=107.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC-------Ccc-ccCCC------cee--eE--EEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE-------VVS-TIPTI------GFN--VE--TVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~-------~~~-~~~t~------~~~--~~--~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|.+++|||||+++|++.. +.. +.++. |.. .. .+.+ ..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 111 22222 211 11 1222 46789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..++..+|++|+|+|+++..+++....|.... . .++|+++|+||+|+.+.... +++.+.+... .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999877766665554322 2 46899999999998653221 2232222221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHH
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
..++++||++|.|++++|+++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2489999999999999999998765
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.5e-25 Score=157.58 Aligned_cols=151 Identities=17% Similarity=0.096 Sum_probs=110.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC---------hhhhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI---------RPYWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~---------~~~~~~~~~ 83 (182)
.++|+++|++|||||||++++.+..+.. ..+|.......+.+.+ ..+.+|||||.... ...+ ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHh
Confidence 4799999999999999999999876432 4556665555666633 48999999997432 1111 1356
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.++.....|...+... ...+.|+++|+||+|+.+..... ........+++++||++|
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcCCC
Confidence 899999999999988887766665544332 33578999999999997543221 112234456999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=8.8e-25 Score=147.96 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=117.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|.+|+|||||++++.+..+.. +.++.+..... +...+ +.+.+||+||+..+..++..++.+++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 699999999999999999999888544 55666644443 55566 88999999999999999999999999999999
Q ss_pred eCCCc-chHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 93 DSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|.... .++.... .|...+..... .+.|+++++||+|+............+.. ....+++++||++|.|+.++|
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHHH
Confidence 99877 6776665 66666655443 28999999999999764322233322222 223459999999999999999
Q ss_pred HHHH
Q 030122 171 DWLS 174 (182)
Q Consensus 171 ~~l~ 174 (182)
+++.
T Consensus 157 ~~l~ 160 (161)
T TIGR00231 157 KIVE 160 (161)
T ss_pred HHhh
Confidence 9863
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=6.1e-26 Score=160.36 Aligned_cols=160 Identities=23% Similarity=0.168 Sum_probs=105.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCC-----------CCCChhhhhhh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCY 81 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~ 81 (182)
+...++|+++|.+|+|||||++++.+..+.. ..|+..+....+.+. .+.+||||| +++++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3456799999999999999999999887654 445444444444444 689999999 45566665555
Q ss_pred CC----CCCEEEEEEeCCCcchH-H---------HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcc
Q 030122 82 FP----NTEAVIYVVDSSDTDRI-Q---------TAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALEL 145 (182)
Q Consensus 82 ~~----~~~~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~ 145 (182)
+. .++++++|+|.+....+ + .....+. .+. ..++|+++|+||+|+.+.. ..+++.+.++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFD-FLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHH-HHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 53 45788888887543221 0 0011111 112 2579999999999996543 12344444443
Q ss_pred cc-cCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 146 HK-IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 146 ~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
.. ......+++++||++| |+++++++|.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 11 1111235899999999 9999999999987654
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=1.1e-24 Score=149.61 Aligned_cols=154 Identities=18% Similarity=0.075 Sum_probs=109.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEeC---CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.|+++|++|+|||||+++|..+.+.. . ..|..+....+... +..+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765 2 23333433444443 689999999999999888888899999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHh---hcccc--cCCCceEEEEecccCCCCHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---LELHK--IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 167 (182)
|+++...-+ ....+..+.. .++|+++|+||+|+.... .+.+... +.... .....++++++|+++|.|++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998753211 1111222211 578999999999987532 2222111 11111 11235679999999999999
Q ss_pred HHHHHHHHHHh
Q 030122 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~~~~~l~~~i~ 178 (182)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988654
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=154.22 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=122.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+||+++|++|||||||+++|.++.+.+ +.+|++........ ..+.+.+|||+|+++++.++..|+.+++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 899999999999999999999999988 77887733333222 2678999999999999999999999999999999
Q ss_pred eCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH-HHHhh----------cccccC-CCceEEEEec
Q 030122 93 DSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEAL----------ELHKIK-NRQWAIFKTC 159 (182)
Q Consensus 93 d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~S 159 (182)
|.++..+ ++....|...+.... ..+.|+++++||+|+........ +...+ ...... .....++++|
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 9999555 555566776765543 24799999999999987643211 11110 000001 1122389999
Q ss_pred cc--CCCCHHHHHHHHHHHHhc
Q 030122 160 AI--KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~--~~~~i~~~~~~l~~~i~~ 179 (182)
++ ++.++.++|..+.+.+.+
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999999888753
No 143
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=8e-25 Score=151.23 Aligned_cols=134 Identities=20% Similarity=0.274 Sum_probs=106.4
Q ss_pred CCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC
Q 030122 41 EVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 41 ~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (182)
.|.+ +.||+|.+... +.+ ..+.+.+|||+|+++++.++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~- 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER- 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence 4555 88999855543 344 46899999999999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 116 LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 116 ~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
..++|+++|+||+|+.... ..++... ........++++||++|.|++++|++|++.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999996432 2222211 1122345689999999999999999999988654
No 144
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.5e-26 Score=153.92 Aligned_cols=156 Identities=15% Similarity=0.242 Sum_probs=131.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
-+.-+|++++|..++||||+++++|.+-|.. +..|+|.+.. .+.+ ..++..+||++|++.|......|++++.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 3456899999999999999999999999888 8899984443 3333 678889999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++||+-++..||+....|+..+.... .++|.++|-||+|+.+... .+.++..+. ..++.+|++..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~--------~RlyRtSvked 166 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH--------KRLYRTSVKED 166 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhh--------hhhhhhhhhhh
Confidence 99999999999999999999997765 7899999999999986422 122333332 34899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|+..+|.+|++.+.+
T Consensus 167 ~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 167 FNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999987764
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=6.2e-24 Score=167.16 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=112.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--c--cCCCceeeEEEEeCCEEEEEEECCCCCC----------Chhh-hhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--T--IPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRPY-WRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (182)
..++|+++|.+|+|||||+++|++..... . ..|.......+.+.+..+.+|||||..+ +..+ ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45899999999999999999999887532 2 2232244455666788899999999632 2222 133
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|+++..+++... ++..+.. .++|+++|+||+|+.+......+.............++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999988877664 3344432 57899999999999753222222222211111223457899999
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 030122 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~~ 180 (182)
++|.|++++|+.+.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 365 KTGRAVDKLVPALETALESW 384 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=2.1e-24 Score=149.23 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=110.2
Q ss_pred EEecCCCChHHHHHHhhcCCC--cc-ccCCCceeeEEEEeC-CEEEEEEECCCCCC----Chhh---hhhhCCCCCEEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTEAVIY 90 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~~i~ 90 (182)
++|++|||||||+++|.+... .. ...|.......+.+. +..+.+||+||... .+.+ +..++..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998864 22 344555555666666 89999999999732 2222 2345678999999
Q ss_pred EEeCCCc------chHHHHHHHHHHHHhccC------CCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 91 VVDSSDT------DRIQTAKEEFHAILEEEE------LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+++. .+++....|...+..... ..+.|+++|+||+|+.......+.. ...........++.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999988 578887777777754432 2479999999999997543332221 111122334569999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
|++++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=7.9e-24 Score=158.90 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=113.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC-------hhhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~-------~~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++.+..... ...|.......+.+.+ ..+.+||+||.... ...+...++.+++
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ 238 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRV 238 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCE
Confidence 69999999999999999999765322 2445556666677755 89999999997432 1233334567999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+++. ++++.+..|..++.... ...+.|+++|+||+|+.+....+++.+.+.. ....+++++||+++
T Consensus 239 ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iSAktg 314 (329)
T TIGR02729 239 LLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPISALTG 314 (329)
T ss_pred EEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEEccCC
Confidence 9999999976 67788877777765542 2357899999999999765333333333221 12346999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
+|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2.2e-23 Score=141.36 Aligned_cols=143 Identities=17% Similarity=0.053 Sum_probs=107.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+..... ...+..+....+...+..+.+|||||...+... ....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999876432 222222444555567889999999997665321 23456789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998877666544322 368999999999999864322 1233455799999999999
Q ss_pred HHHHHHHHHHHH
Q 030122 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 i~~~~~~l~~~i 177 (182)
++++++++...+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=3.7e-24 Score=143.68 Aligned_cols=151 Identities=26% Similarity=0.325 Sum_probs=115.4
Q ss_pred EEecCCCChHHHHHHhhcCCC-cc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 22 SFFIDNFGNLCDTDRLQMGEV-VS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..+|. ........ ....+.+||++|+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 33 44554 44444444 3788999999999988888888899999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.++.....|+..........+.|+++++||+|+.......... ...........+++.+|+.++.|+.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999988888874444444445789999999999997654433321 011111334567999999999999999999863
No 150
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2e-24 Score=144.54 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=93.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCC-----CChhhhhhhCCCCCEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT-----SIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~~i~v~d 93 (182)
||+++|++|+|||||+++|.+..+. +.+|.+. .+.. .+|||||+. .++.+.. .++++|++++|||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 8999999999999999999987653 4444432 2222 689999973 2333333 4789999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++.++.. ..|... ...|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHHH
Confidence 999988754 233221 124999999999986522 222222211111 1125899999999999999998
Q ss_pred HH
Q 030122 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 151
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=1e-23 Score=149.00 Aligned_cols=157 Identities=24% Similarity=0.284 Sum_probs=116.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCC-CEEEEEEe
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-EAVIYVVD 93 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~~i~v~d 93 (182)
+|+++|++|||||||+++|..+.+....+++..+...+.. ....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877644444433333333 367899999999999999999999998 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHhhc-------------c------------
Q 030122 94 SSDT-DRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALE-------------L------------ 145 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~~~-------------~------------ 145 (182)
+.+. .++.....|+..++.... ..++|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 778888888777654321 25899999999999976544322211110 0
Q ss_pred -------c-cc--CCCceEEEEecccCCC-CHHHHHHHHHH
Q 030122 146 -------H-KI--KNRQWAIFKTCAIKGE-GLFEGMDWLSN 175 (182)
Q Consensus 146 -------~-~~--~~~~~~~~~~Sa~~~~-~i~~~~~~l~~ 175 (182)
. .+ ....+.+.++|++.+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 00 1245788999998876 69999999864
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=4.1e-23 Score=144.23 Aligned_cols=155 Identities=21% Similarity=0.134 Sum_probs=113.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-c------------------cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-T------------------IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~------------------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||++++++..... . ..+.......+.+....+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876554 1 1222233344455678999999999999888888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhccccc-------
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~------- 148 (182)
.++..+|++++|+|..++.+... ..++..+.. .+.|+++++||+|+...... +++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 89999999999999987654332 233333322 57999999999999863332 223333322211
Q ss_pred --CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 235678999999999999999999998763
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=2.9e-23 Score=156.85 Aligned_cols=155 Identities=13% Similarity=0.129 Sum_probs=106.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC-Chhhh-------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-IRPYW-------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-~~~~~-------~~~~~ 83 (182)
+..+|+++|.+|||||||+++|.+..+.. ..+|.......+.+.+..+.+|||||... +..+. ...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 34699999999999999999999887753 33344444455666788999999999843 22211 12467
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+... ...++.+.+... .....++++||++|
T Consensus 131 ~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg 201 (339)
T PRK15494 131 SADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSG 201 (339)
T ss_pred hCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCc
Confidence 8999999999665 344443333322222 35677889999998653 233333333211 12346999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++.+.+.+
T Consensus 202 ~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 202 KNIDGLLEYITSKAKI 217 (339)
T ss_pred cCHHHHHHHHHHhCCC
Confidence 9999999999987653
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=2.9e-23 Score=152.80 Aligned_cols=152 Identities=12% Similarity=0.045 Sum_probs=102.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCCh-h-------hhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIR-P-------YWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~-~-------~~~~~~~~~~ 86 (182)
+|+++|.+|||||||+|+|.+..... ...|.......+ ...+..+.+|||||..... . ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 79999999999999999999987643 233333222222 2356789999999975431 1 1344678999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++++|+|+++..+.. ..++..+ .. .+.|+++|+||+|+.+.....+....+... ....+++.+||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999876654 2222222 22 478999999999997422211111111100 11126999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++++++.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887654
No 155
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=3.5e-23 Score=161.70 Aligned_cols=160 Identities=18% Similarity=0.065 Sum_probs=112.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh-----------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||+++|++..... ...|.......+.+.+..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 456899999999999999999999876432 222322334455567779999999997654322 13
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-CCCHHHHHHhhcccccCCCceEEEEe
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++++|+|+++..+..+.. ++..+.. .+.|+++|+||+|+.. ....+++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 4678899999999999887766543 2333322 4789999999999972 22223333333222222245689999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+++.+...+
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.1e-23 Score=146.64 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred EEEEEecCCCChHHHHHHhhc--CCCcc-c------------cCCCc----eeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GEVVS-T------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~~~~-~------------~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|.+++|||||+++|++ +.+.. + .++.+ .....+.++...+.+|||||+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 44433 1 11222 22234555889999999999999999999
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcc-c-ccCCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALEL-H-KIKNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~-~-~~~~~~~~ 154 (182)
.+++++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+...... +++...+.. . .....+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999998742 2333333343322 47899999999999754322 122222110 0 11234678
Q ss_pred EEEecccCCCCHHHH
Q 030122 155 IFKTCAIKGEGLFEG 169 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~ 169 (182)
++.+||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999877443
No 157
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=4.3e-23 Score=140.23 Aligned_cols=146 Identities=19% Similarity=0.135 Sum_probs=104.0
Q ss_pred EEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhCC--CCCEEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYFP--NTEAVIY 90 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~~~i~ 90 (182)
++|.+|+|||||++++.+..... ...|.......+.+.+..+.+|||||+..+.. ++..++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876433 22344455666777778999999999887654 3555564 8999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|+|.++++... .++..+.. .++|+++|+||+|+.+..........+. ...+.+++++|+.+|.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 99998765432 33333332 4689999999999976432211111111 1123469999999999999999
Q ss_pred HHHHHHHh
Q 030122 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~l~~~i~ 178 (182)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988653
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.7e-23 Score=158.35 Aligned_cols=149 Identities=19% Similarity=0.103 Sum_probs=110.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCC---------ChhhhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS---------IRPYWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~---------~~~~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|+|.+..... ..+|..+....+.+ .+..+.+|||+|..+ |+..+ ..+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHH
Confidence 3799999999999999999999876432 56777777777777 678999999999732 22222 2467
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|++++.+++....|...+ ......+.|+++|+||+|+.+.. ++..... ...+++.+||++|
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------~~~~~i~iSAktg 337 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEP---RIERLEE------GYPEAVFVSAKTG 337 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChH---hHHHHHh------CCCCEEEEEccCC
Confidence 899999999999998877765554433 22223578999999999997532 2211111 1124899999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|++++++++.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.7e-23 Score=162.74 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=106.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~ 84 (182)
..+|+++|.+|||||||+++|++..... ..++.. .....+.+.+..+.+|||||.+. +...+..+++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 3689999999999999999999876543 223222 33444556778899999999763 23345667889
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++|+|+|+++..++.. ..+...+ .. .++|+++|+||+|+..... +........ . . ..+++||++|.
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g~ 185 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHGR 185 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCCC
Confidence 999999999998766532 2222223 22 5799999999999864321 111111111 1 1 24789999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999987754
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=2.9e-23 Score=145.70 Aligned_cols=156 Identities=19% Similarity=0.058 Sum_probs=104.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC----CCc----c--ccCCCceeeEEEEeC--------------CEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG----EVV----S--TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~----~~~----~--~~~t~~~~~~~~~~~--------------~~~~~i~d~~g~~~ 73 (182)
++|+++|++|+|||||+++|+.. .+. + +..|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999973 111 1 344555554444443 78999999999865
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccc--
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~-- 147 (182)
+........+.+|++++|+|+++..+......+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5333334456789999999998754443332221 1121 36799999999998743222 22222211111
Q ss_pred cCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++++.+||++|.|++++++++.+++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1224567999999999999999999988764
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=7.9e-23 Score=158.85 Aligned_cols=148 Identities=15% Similarity=0.044 Sum_probs=109.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-ccC-CCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-TIP-TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-~~~-t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|++|+|||||+|+|++.... . ... |..+....+.+++..+.+|||||...+... ...+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3479999999999999999999987542 2 222 223445566778899999999998665432 245778
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|.+++.+++.. |+..+.. .+.|+++|+||+|+... ....+.. ....+++.+|+++
T Consensus 282 ~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~- 345 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ- 345 (442)
T ss_pred hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec-
Confidence 99999999999998887765 6555432 47899999999999653 2222211 2234589999998
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+.+.+.+.+
T Consensus 346 ~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 LKIKALVDLLTQKINA 361 (442)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999998887754
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=4.5e-23 Score=139.87 Aligned_cols=145 Identities=17% Similarity=0.095 Sum_probs=100.5
Q ss_pred EEEecCCCChHHHHHHhhcCCCc--c-c-cCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCCCCCEE
Q 030122 21 FSFFIDNFGNLCDTDRLQMGEVV--S-T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTEAV 88 (182)
Q Consensus 21 ~viG~~~~GKssl~~~l~~~~~~--~-~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~~ 88 (182)
+++|.+|+|||||+++|++.... . . ..|.........+.+..+.+|||||...+.. .+...+.++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2 2 2223344555666778999999999988654 334567789999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
++|+|..+..+.... ++...+.. .+.|+++|+||+|+...... ...+... ...+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~----~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL----GFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc----CCCCeEEEecccCCCHHH
Confidence 999999875443322 22222222 36999999999999764322 1111111 111489999999999999
Q ss_pred HHHHHHHHH
Q 030122 169 GMDWLSNTL 177 (182)
Q Consensus 169 ~~~~l~~~i 177 (182)
+|+++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.1e-22 Score=138.63 Aligned_cols=155 Identities=18% Similarity=0.081 Sum_probs=105.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-----------hhhhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|.+|+|||||++++.+..... ...+.......+...+..+.+||+||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4799999999999999999999876432 22222233344555777899999999754311 11234
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEec
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+.+.. ..+.+...+..........+++.+|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5789999999999988775443 22222222 468999999999997652 2233333332221122346799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (182)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=6e-23 Score=160.24 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=110.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
..++|+++|.+|+|||||+|+|++.... . ...|..+....+.+.+..+.+|||+|...+... ...++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 2 333444556667778889999999998754322 233678
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... .....+++.+||++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg 355 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTG 355 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCC
Confidence 8999999999999888775443322 2578999999999997543211 112345899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987753
No 165
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=3.9e-23 Score=138.48 Aligned_cols=141 Identities=21% Similarity=0.175 Sum_probs=101.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTE 86 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~~ 86 (182)
++|+++|.||||||||+|+|.+....- ...|.......+.+.+..+.++|+||-....+ .+..++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988443 44555566667777889999999999654432 233343 5899
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEecccC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.+ .-.....++++ .++|+++++||+|..... ..+.+.+.++ ++++.+||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCC
Confidence 999999988743 33344444544 579999999999986532 2345555554 4599999999
Q ss_pred CCCHHHHHHHH
Q 030122 163 GEGLFEGMDWL 173 (182)
Q Consensus 163 ~~~i~~~~~~l 173 (182)
++|++++++.+
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999998764
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=8.1e-23 Score=159.17 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=112.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeCCEEEEEEECCCCCC----Chh---hhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYNNIKFQVWDLGGQTS----IRP---YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----~~~---~~~~~~~~~~~~ 88 (182)
.|+++|.||||||||+++|.+.... . ...|..+....+.+.+..+.+||+||... ... ....+++.++++
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvL 240 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVL 240 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEE
Confidence 7999999999999999999976543 2 45566677777888888999999999532 111 123346789999
Q ss_pred EEEEeCCCc----chHHHHHHHHHHHHhcc----------CCCCCeEEEEeeCCCCCCCCCHHHH-HHhhcccccCCCce
Q 030122 89 IYVVDSSDT----DRIQTAKEEFHAILEEE----------ELKGAVALIFANKQDLPGALDDAAV-SEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~i~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (182)
|+|+|+++. +.+.....+..++..+. ...+.|+++|+||+|+.+.....+. ...+ ....+
T Consensus 241 v~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~ 315 (500)
T PRK12296 241 VHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGW 315 (500)
T ss_pred EEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCC
Confidence 999999753 34555544444443332 2357899999999999754332222 2111 22345
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+++.+||++++|+++++.++.+.+...
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999887653
No 167
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=6.7e-22 Score=152.19 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=111.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeC-CEEEEEEECCCCCC----Chhh---hhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRPY---WRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~ 87 (182)
.|+++|.||||||||++++++.... . ...|..++...+.+. ...+.+||+||... ...+ +...++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7999999999999999999986632 2 344555666666665 78999999999632 2223 2334567999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+++|+|+++. +.++....|..++.... ...++|+++|+||+|+..... .+.+.+.+. .+++.+||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999865 56777777766665542 235789999999999853211 112222221 4599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987764
No 168
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=2e-23 Score=135.67 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=81.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
||+|+|++|||||||+++|++..+.. ..++.+ +....... ....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988771 222222 33223333 445699999999988888777778899999999
Q ss_pred EeCCCcchHHHHHH---HHHHHHhccCCCCCeEEEEeeCCC
Q 030122 92 VDSSDTDRIQTAKE---EFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
||++++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 45555443 25699999999998
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=7.5e-22 Score=152.66 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCCCCC--hhhhh------hhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI--RPYWR------CYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~--~~~~~------~~~~~~ 85 (182)
.+|+++|.+|||||||+|+|.+..... ...|.......+.+.+ ..+.+|||+|..+. ..++. ..+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999876432 4556666666666644 38899999997442 22222 235789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE-EEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (182)
|++++|+|++++.+++.+..|...+.. ....++|+++|+||+|+.+... ..+... . ...+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL~e-l~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVLEE-IDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHH-hccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999999877776544332222 2225789999999999964311 111111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHHHh
Q 030122 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~i~~~~~~l~~~i~ 178 (182)
|++++++++.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998875
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=2.6e-22 Score=141.22 Aligned_cols=162 Identities=18% Similarity=0.096 Sum_probs=105.1
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCCEEEEEEECCCCCC----------Chhh
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~d~~g~~~----------~~~~ 77 (182)
..++...++|+++|.+|+|||||++++++..+.. ..++.+.... ... .+..+.+|||||... +...
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3455677899999999999999999999876433 5555542221 112 247899999999532 2233
Q ss_pred hhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE
Q 030122 78 WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
...++.. .+++++|+|.+.+.+... .++...+.. .++|+++++||+|+.+....+....... ........+
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~ 170 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDE 170 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCc
Confidence 3444443 467888899877644332 112222222 4789999999999975433222221111 111111456
Q ss_pred EEEecccCCCCHHHHHHHHHHHHhc
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++++|+++|.|++++++++.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999988764
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=1.5e-21 Score=156.06 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=110.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccC--CCceeeEEEEeCCE-EEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
..+..+|+++|++++|||||+++|.+..+.. ..+ |..+....+.+.+. .+.+|||||++.|..++..++..+|++|
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3456799999999999999999999877655 222 33344455555433 8999999999999999998999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccCCCC
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 165 (182)
+|+|+++...-+... .+... ...++|+++++||+|+.+. ..+.+...+..... .....+++++||++|+|
T Consensus 164 LVVda~dgv~~qT~e-~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTIE-AISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHHH-HHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999988643222211 11211 1257899999999999753 33333333221111 11235799999999999
Q ss_pred HHHHHHHHHH
Q 030122 166 LFEGMDWLSN 175 (182)
Q Consensus 166 i~~~~~~l~~ 175 (182)
++++|+++..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 172
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=130.72 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=126.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCC--------cc-----ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEV--------VS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~--------~~-----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~ 78 (182)
......||+++|+.++||||++++++.... .. +..|+..++....+ .+..+.+++||||++|+-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 345678999999999999999999997663 11 22455577777777 44899999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..+++++.++|+++|.+++..+ .....+..+ ... ..+|+++++||.|+.+...++++.+.+.... ...+++..
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeee
Confidence 9999999999999999999888 333333333 322 2399999999999999988988888876653 45679999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
++..+++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999998887654
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=3.5e-22 Score=135.96 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=94.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh----hhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----RCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~~i~v~d~ 94 (182)
+|+++|.+|+|||||++++.+... ...++.+ +.+... .+|||||.......+ ...+.++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 799999999999999999875432 1222222 222111 269999974333222 2336789999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
++..++. ..|+..+ ..+.|+++++||+|+.+. ..+.+.+..... ....+++++||++|+|++++|+++.
T Consensus 75 ~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCccccc--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 9887652 2343332 146799999999998653 333332222111 1124799999999999999999998
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87754
No 174
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.8e-23 Score=134.21 Aligned_cols=162 Identities=28% Similarity=0.482 Sum_probs=141.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
++-|++|+|..|+|||||++-|.........||.......+.+.+.+++..|.+|+..-+..|..|+..+|++++.+|+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~ 98 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAY 98 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehh
Confidence 34589999999999999999999888888999999888899999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc------------ccCCCceEEEEecccCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH------------KIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~ 163 (182)
+.++|.+....+..++......+.|+++.+||+|.+.+...++....+.+. ....+.+.+|.||...+
T Consensus 99 d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~ 178 (193)
T KOG0077|consen 99 DQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRK 178 (193)
T ss_pred hHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEcc
Confidence 999999999988888888777899999999999999887766665554322 22346688999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|..+.|.|+...+
T Consensus 179 ~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 179 MGYGEGFKWLSQYI 192 (193)
T ss_pred Cccceeeeehhhhc
Confidence 99999999886543
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=1.7e-21 Score=133.00 Aligned_cols=152 Identities=18% Similarity=0.095 Sum_probs=101.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccc---cCCCc-eeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVST---IPTIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
..+|+++|++|+|||||++++.+...... ..+.. .........+..+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998765431 12211 11222233568899999999765432 23345778
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|+|++++.+ ....++...+.. .+.|+++++||+|+... ....+....+.. .....+++.+|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccC
Confidence 999999999988722 222222222222 36899999999999742 222233322221 122456999999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|+++++++|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999998765
No 176
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.2e-21 Score=160.84 Aligned_cols=159 Identities=14% Similarity=0.035 Sum_probs=112.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCCC----------Chhh-hhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRPY-WRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~-~~~ 80 (182)
..++|+++|.+|||||||+++|++.... . ...|.......+.+.+..+.+|||||..+ +..+ ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3579999999999999999999988742 2 22333344455666778899999999642 1111 133
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+....+.+..............+++.+||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999988877654 3344432 47899999999999764333333322222111223346899999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 177
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.6e-21 Score=156.43 Aligned_cols=150 Identities=18% Similarity=0.177 Sum_probs=109.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC-------Ccc-ccCC------Cc--ee--eEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE-------VVS-TIPT------IG--FN--VETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~-------~~~-~~~t------~~--~~--~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|+.++|||||+++|+... +.. +..+ .| +. ...+.+ ..+.+++|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 69999999999999999998642 111 2111 13 22 222333 23789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..+++.+|++|+|+|+++..+.+....|+..+ . .++|+++|+||+|+...... +++.+.++.. .
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~ 154 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----A 154 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999877777666665433 2 46899999999998753221 2333332221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++|+++.+.+.
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 24899999999999999999988764
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.3e-21 Score=151.66 Aligned_cols=160 Identities=16% Similarity=0.072 Sum_probs=110.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh-----------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||++++++..... ..+... .....+.+.+..+.+|||||..+.... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 346899999999999999999999766432 222222 223344457788999999996543211 12
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|++++.+.++.. ++..+.. .+.|+++++||+|+.+.....++...+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 3567899999999999887765543 2233322 4689999999999974333334433333222223456899999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
|++|.|++++++.+.+...+
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=5.8e-22 Score=140.17 Aligned_cols=154 Identities=9% Similarity=-0.026 Sum_probs=100.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC--Ccc----ccCCCceeeEEEEeC---------------------------C----
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE--VVS----TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~--~~~----~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||+..+.+.. ... ...++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997541 111 222222111111111 2
Q ss_pred --EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 --IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 --~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+.+|||||++.+...+...+..+|++++|+|++++ .+++.+.. +... ...|+++|+||+|+.+..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~---~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM---GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc---CCCcEEEEEEchhccCHH
Confidence 6899999999998887777778889999999999874 22332222 2111 235799999999997532
Q ss_pred CHHHHHHhhc--ccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 135 DDAAVSEALE--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...+..+.+. ........++++.+||++|+|++++|+++.+.+.
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 2211111111 0011123457999999999999999999988764
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.3e-21 Score=132.45 Aligned_cols=151 Identities=19% Similarity=0.109 Sum_probs=107.3
Q ss_pred EEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeC-CEEEEEEECCCCCCChh-------hhhhhCCCCCEEE
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTEAVI 89 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~-------~~~~~~~~~~~~i 89 (182)
++|++|||||||++++.+..... ...+........... ...+.+||+||...... .+..++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876552 222323333344443 77999999999876543 3445778999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+|+|..+..+..... +..... ..+.|+++|+||+|+.......................+++++|++++.|+.++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887766554 222222 268999999999999865444333221222233445678999999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 181
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.3e-22 Score=133.27 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=136.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.-.+++++|..|.||||+.++...+.|.. +.+|+|...+...+ ..+++..|||.|++.+..+...|+-+..++|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 35799999999999999999999999988 99999988877766 44999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+||++..-++..+..|.+++.... .++|+++++||.|..... .+.........+.+.+++.|++.+-|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 999999999999999999998876 679999999999987532 2233344446677889999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
.|+.+.+..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999988754
No 182
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=4.2e-22 Score=129.75 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=131.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
...-.+||.++|++..|||||+-++.++.+.+ +..+.|++.. ++.+ ..+.+.+||.+|++++..+.+..+.++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34456899999999999999999999998866 8888885543 4444 66889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
++++||++.++++..+..|+.+....+ ..-+| ++|++|.|..-.-++ ++-.....+..++-.+.++|++|+..+.|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999987654 23344 678999997543322 22222233334455667899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++.+|..+...+-+
T Consensus 174 v~KIFK~vlAklFn 187 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998877643
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=5.3e-22 Score=137.85 Aligned_cols=151 Identities=18% Similarity=0.135 Sum_probs=97.2
Q ss_pred cccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeCCEEEEEEECCCCCC----------C
Q 030122 8 SVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGGQTS----------I 74 (182)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~i~d~~g~~~----------~ 74 (182)
+..+.++...++|+++|++|+|||||++++++..+.. ..++.+. ....+... -.+.+|||||... +
T Consensus 9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHH
Confidence 3445667788899999999999999999999876433 4444442 22223333 3689999999532 2
Q ss_pred hhhhhhhCC---CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccc
Q 030122 75 RPYWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHK 147 (182)
Q Consensus 75 ~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~ 147 (182)
..+...+++ .++++++|+|.+++-+..... .+..+ .. .+.|+++++||+|+...... +++.+.+...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~-~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~- 161 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWL-RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD- 161 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence 222334444 468999999998765544432 22222 22 47899999999999753222 2222332221
Q ss_pred cCCCceEEEEecccCCCCHH
Q 030122 148 IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~ 167 (182)
....+++.+||++|+|++
T Consensus 162 --~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --cCCCceEEEECCCCCCCC
Confidence 123469999999999974
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=3e-21 Score=157.75 Aligned_cols=157 Identities=19% Similarity=0.114 Sum_probs=112.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-cc--CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+...|+++|+.++|||||+++|.+..+.. .. .|..+....+.+.+..+.+|||||++.|..++..++..+|++|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 4466799999999999999999998876654 22 23334445566677899999999999999999989999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cC--CCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IK--NRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~~~i 166 (182)
|||+++...-+....| ... ...++|+++++||+|+... ..+.+...+... . .. ...++++++||++|.|+
T Consensus 367 VVdAddGv~~qT~e~i-~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-NHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhHHHHH-HHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 9999874221111111 111 1257999999999999753 223332222111 1 11 13478999999999999
Q ss_pred HHHHHHHHHH
Q 030122 167 FEGMDWLSNT 176 (182)
Q Consensus 167 ~~~~~~l~~~ 176 (182)
+++|+++...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.7e-21 Score=150.56 Aligned_cols=145 Identities=17% Similarity=0.117 Sum_probs=103.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+++|.+..... ...|.......+.+.+..+.+|||||... ++.....++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 489999999999999999999876432 22233355566777889999999999887 233345677899
Q ss_pred CEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|..+..+.. .+..|+.. .+.|+++|+||+|..... ....+..... + -.++++||++|
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~~--~~~~~~~~lg-~----~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDEE--ADAYEFYSLG-L----GEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccch--hhHHHHHhcC-C----CCCEEEEeeCC
Confidence 9999999998754432 33334332 378999999999975421 1222221111 1 12789999999
Q ss_pred CCHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~i~~~~~~l~~~ 176 (182)
.|++++++++...
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999873
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3.5e-21 Score=150.45 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=105.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~~ 86 (182)
+|+++|.+|+|||||+|+|.+..... ...|.......+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999876432 22233355566677888999999999633 3345566788999
Q ss_pred EEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQT--AKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|..+..+..+ +..|+.. .++|+++|+||+|+...... ..+...+ .-..++.+||++|.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAV--AAEFYSL-----GFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCccccc--HHHHHhc-----CCCCeEEEeCCcCC
Confidence 9999999987544332 3333322 47899999999998754321 1111111 11148999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++++++.+.+.+
T Consensus 147 gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 147 GIGDLLDAILELLPE 161 (429)
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999987743
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=5e-21 Score=146.55 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=111.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh-------hhhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR-------PYWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~ 87 (182)
.|+++|.||||||||+|+|++.+... ...|.......+.+. ...+.++||||...-. ......++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 69999999999999999999765422 334444666666664 4579999999964311 112235778999
Q ss_pred EEEEEeCC---CcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSS---DTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++ +.+.++....|+..+.... ...+.|+++|+||+|+.......+....+... .....+++.+||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999988 4566777777777765542 23478999999999997543322222222111 011124899999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 188
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=5.9e-22 Score=138.62 Aligned_cols=158 Identities=19% Similarity=0.104 Sum_probs=112.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-------------------ccCCCceeeEEEE--eCCEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~i~d~~g~~ 72 (182)
...+|+++|+.++|||||+++|...... . +.-|+......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3568999999999999999999953311 0 3445556666677 788999999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhc-cccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALE-LHKI 148 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~-~~~~ 148 (182)
.|.......+..+|++|+|+|+.+.-... ....+..+.. .++|+++|+||+|+...... +++...+. ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 98888888889999999999998764322 2222233322 57899999999999832111 12221221 1111
Q ss_pred CC-CceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KN-RQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.. ..++++.+||.+|.|++++++.+.+.+.
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 3689999999999999999999988753
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=1.6e-21 Score=156.23 Aligned_cols=153 Identities=18% Similarity=0.101 Sum_probs=109.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC---Ccc-c--cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE---VVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~---~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.|+++|++++|||||+++|.+.. +.+ + ..|+.+....+.+.+..+.+||+||+++|...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999999643 222 2 3344455556667779999999999999988888889999999999
Q ss_pred EeCCCc---chHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHHHHH----HhhcccccCCCceEEEEecccCC
Q 030122 92 VDSSDT---DRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVS----EALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|+++. .+++.+. ++.. .++| +++|+||+|+.+....+.+. +.+.... ....++++++||++|
T Consensus 81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTG 151 (581)
T ss_pred EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCC
Confidence 999873 3333321 1222 4677 99999999997543222211 1111110 112567999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999998876654
No 190
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=9.6e-21 Score=141.04 Aligned_cols=155 Identities=16% Similarity=0.104 Sum_probs=103.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCChh--------hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 84 (182)
.-.|+++|++|||||||+|+|++..... ...|.......+ ...+..+.+|||||...... .....+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999887644 222222222222 22557899999999754321 22335678
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+... ....+..+.+... ....+++.+||+++
T Consensus 85 ~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~ 156 (292)
T PRK00089 85 VDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALKG 156 (292)
T ss_pred CCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCC
Confidence 999999999987322 222233333222 46899999999999742 2222222222211 12346999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 157 ~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 157 DNVDELLDVIAKYLPE 172 (292)
T ss_pred CCHHHHHHHHHHhCCC
Confidence 9999999999987653
No 191
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=9.1e-21 Score=123.23 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=127.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEe---CCEEEEEEECCCCCCC-hhhhhhhCCCCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTEA 87 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~ 87 (182)
+--||++.|..++|||+|+.++.-+.... ..||++ ++...+.. ..-.+.++||.|.... ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 34689999999999999999988655433 788887 66666666 2346889999998777 5678889999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++||+..+++||+.+...-+.|-.......+|+++.+||+|..+... +....+..|++...+..+++++.+...+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 999999999999987776666665555667899999999999975432 22233344555566779999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030122 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~~~~~l~~~i~~~ 180 (182)
+.|..+.+.+-.-
T Consensus 165 epf~~l~~rl~~p 177 (198)
T KOG3883|consen 165 EPFTYLASRLHQP 177 (198)
T ss_pred hHHHHHHHhccCC
Confidence 9999999877643
No 192
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=5.4e-21 Score=155.12 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=110.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+..+|+++|++++|||||+++|.+..+.. . ..|..+....+.+ .+..+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 355689999999999999999999877654 2 2232222333333 35899999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cC--CCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IK--NRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~ 163 (182)
+|+|+|+++...-+.... +..+ ...++|+++++||+|+... ..+.+...+... . .. ...++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999887432222211 1222 1257899999999999753 233333332111 0 01 13468999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.|++++++++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987653
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=2e-20 Score=134.74 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=104.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~~ 88 (182)
+|+++|++|+|||||+++|.+..... ...|.......+.+.+..+++||+||..... .....+++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 79999999999999999999865322 3445556667777888999999999975432 1334578899999
Q ss_pred EEEEeCCCcch-HHHHHHHHH----------------------------------------HHHhcc-------------
Q 030122 89 IYVVDSSDTDR-IQTAKEEFH----------------------------------------AILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 114 (182)
++|+|++++.. .+.+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987652 222222221 111110
Q ss_pred -----------CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 115 -----------ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 115 -----------~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...-+|+++|+||+|+... ++.. .+. .. ..++++||++|.|++++|+.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~-~~~----~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELD-LLA----RQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHH-HHh----cC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0123699999999998643 2222 111 11 23899999999999999999988653
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1e-20 Score=155.33 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=103.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+|+|||||+|+|++.......++.| .......+.+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 344689999999999999999999876543233333 22233444778999999999764 233445577
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|.++.-+..+ ..|...+ .. .++|+++|+||+|+.... ....+...+. .. ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg-~~----~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG-LG----EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHcC-CC----CeEEEECCC
Confidence 89999999999976422111 1233333 22 579999999999986432 1222221111 11 257899999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++|+++++.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999987754
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=3.6e-20 Score=148.83 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=108.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC--Ccc----------------ccCCCceeeEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE--VVS----------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~--~~~----------------~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+|+++|+.++|||||+.+|+... +.. +.-|+......+.| +.+.+++|||||+.+|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 79999999999999999998632 110 12222222233444 26889999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..+..+++.+|++|+|+|+++....+....|.... . .++|+++|+||+|+...... +++.+.++.. .
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~ 158 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-----A 158 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999999876665555553322 1 47899999999998754321 2232222221 1
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++++++.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 24899999999999999999988764
No 196
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.85 E-value=7.3e-20 Score=132.00 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=110.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--------------c-------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++|+..... + +..|+......+.+++..+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863210 0 122233444566678999999999999999988
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhc----------
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALE---------- 144 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~---------- 144 (182)
+..+++.+|++++|+|.++.... ....++..+.. .++|+++++||+|+..... .+++...+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876443 33344444432 4789999999999875321 111211111
Q ss_pred ----------------------------------------------ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 145 ----------------------------------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 145 ----------------------------------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.......-+|++..||.++.|++.+++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 001123458999999999999999999998865
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=2.5e-20 Score=145.27 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc----------------------------------cccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV----------------------------------STIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|++++|||||+++|+..... .+.-|+......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 34689999999999999999999842210 13334445555666688
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---- 136 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---- 136 (182)
..+.+|||||+++|.......+..+|++++|+|++++..+.....+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999999886655555788999999999987322211111111222221 23479999999999752211
Q ss_pred --HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 --AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++.+.+....+....++++.+||++|+|+++..
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1222222222222234689999999999998743
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=3.3e-20 Score=148.91 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=99.0
Q ss_pred ecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh------hhhhC--CCCCEEEEEE
Q 030122 24 FIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTEAVIYVV 92 (182)
Q Consensus 24 G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~~~~i~v~ 92 (182)
|.+|+|||||+|++.+..... ..|+.. .....+.+++..+++|||||++++... ...++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999876533 334333 344455667788999999999887543 33333 3789999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|.++.++ ...+..++.+ .+.|+++|+||+|+.+........+.+. +..+++++++||++|+|+++++++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9887443 2333333332 4789999999999864332211111111 112356999999999999999999
Q ss_pred HHHHH
Q 030122 173 LSNTL 177 (182)
Q Consensus 173 l~~~i 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98754
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=3.2e-20 Score=144.71 Aligned_cols=154 Identities=13% Similarity=0.043 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC--CCcc--------------------------------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|+.++|||||+++|+.. .... +..|+......+.+.+
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 34689999999999999999999852 1110 1223334444555578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--H-
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD--D- 136 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~- 136 (182)
..+.+||+||+++|.......+..+|++++|+|+++.+++.... .+...+... ....|+++++||+|+.+... .
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHHH
Confidence 99999999999988766666778999999999999875431111 111112222 13458999999999974221 1
Q ss_pred ---HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 ---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
.++.+.+.........++++++||++|.|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1222222222222235789999999999998633
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=4.8e-20 Score=147.21 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=104.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe----------------CCEEEEEEECCCCCCCh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY----------------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~----------------~~~~~~i~d~~g~~~~~ 75 (182)
..-|+++|++++|||||+++|.+..+.. ..++++........ ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3579999999999999999999877653 23344432222211 11238899999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHH
Q 030122 76 PYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAA 138 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~ 138 (182)
.++..+++.+|++++|+|+++ +.+++.+. .+ .. .++|+++++||+|+.+.. ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999999999999999999987 34443332 11 11 478999999999996421 0001
Q ss_pred HH-----------Hhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 139 VS-----------EALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 139 ~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
+. ..+....+ ....++++.+||++|+|+++++.++...
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 10 01111111 1235789999999999999999988643
No 201
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.2e-19 Score=148.97 Aligned_cols=150 Identities=16% Similarity=0.078 Sum_probs=104.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh----------hhhhC-
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF- 82 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~~~- 82 (182)
.++|+++|.+|||||||+|++.+..... ...|.+.....+.+.+.++.+||+||..++... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 4789999999999999999999765432 222333334445567889999999998776431 22232
Q ss_pred -CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 83 -PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 83 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..+|++++|+|.++.++- ..+..++.+ .++|+++++||+|+.+........+.+. +..+++++.+|++
T Consensus 83 ~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~ 151 (772)
T PRK09554 83 SGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVST 151 (772)
T ss_pred ccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEee
Confidence 478999999999886542 234444433 4799999999999875433211111111 1123569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i 177 (182)
+|+|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999998887654
No 202
>COG1159 Era GTPase [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=130.97 Aligned_cols=156 Identities=14% Similarity=0.071 Sum_probs=105.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE-EeCCEEEEEEECCCCCCCh--------hhhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV-QYNNIKFQVWDLGGQTSIR--------PYWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~-~~~~~~~~i~d~~g~~~~~--------~~~~~~~~ 83 (182)
+...|+++|.||+|||||+|++++.+..- ...|..-...-+ ..+...+.++||||-.+-+ ......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 34579999999999999999999998765 333333222222 2278899999999953321 12334567
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+|+++||+|+++.-.- ...+.-+.+.. .+.|+++++||+|...... ...+.+.+..... -..++.+||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~---f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP---FKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC---cceEEEeeccc
Confidence 89999999999874321 22222222222 4689999999999886544 2333333322211 12599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++.+.+.+...+.+
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999998877654
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.5e-19 Score=144.86 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=113.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC--CCcc-----------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++|+.++|||||+++|+.. .+.. +..|+......+.+++.++.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999862 2211 22333344456777899999999999999998889
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhccccc--CCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKI--KNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~ 154 (182)
.+++.+|++++|+|+.+. .......|+..+.. .++|+++|+||+|+...... +++.+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999763 23444556565544 47899999999998754321 222232221111 223578
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
++.+||++|. |+..+|+.+++.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999995 79999999888764
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=135.93 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=107.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh---------hhhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+++|.||+|||||+|||++....- ..-|-...+....+.+..|.++||+|-+... .+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999988654 3444447777788888889999999976432 244556778
Q ss_pred CCEEEEEEeCCCcch-H-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 85 TEAVIYVVDSSDTDR-I-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s-~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
||++|||+|....-+ . +.+.++++ . .++|+++|+||+|...... ...+.+.+..- ..+.+||.+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr----~---~~kpviLvvNK~D~~~~e~--~~~efyslG~g-----~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILR----R---SKKPVILVVNKIDNLKAEE--LAYEFYSLGFG-----EPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH----h---cCCCEEEEEEcccCchhhh--hHHHHHhcCCC-----CceEeehhh
Confidence 999999999876433 2 22333322 1 5799999999999873221 22222222222 389999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|+.+++++++..+
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999999876
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=3.2e-19 Score=142.96 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=110.3
Q ss_pred eEEEEEecCCCChHHHHHHhhc--CCCccc-------------cCCCc----eeeEEEEeCCEEEEEEECCCCCCChhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 78 (182)
-+|+++|+.++|||||+++|+. +.+... ..+.+ .....+.+++..+.+|||||+..|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 3799999999999999999996 333221 12233 2233455688999999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcc-ccc-CCCce
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALEL-HKI-KNRQW 153 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~-~~~-~~~~~ 153 (182)
..+++.+|++|+|+|+.+....+ ...++..... .++|.++++||+|....... +++.+.+.. ... ....+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999998753322 2233333333 57899999999999765432 233333311 111 22457
Q ss_pred EEEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 154 AIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
+++.+||.+|. |+..+++.+++.+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 58888888877653
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=2.3e-19 Score=122.76 Aligned_cols=150 Identities=18% Similarity=0.074 Sum_probs=96.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCCEEEEEEECCCCCC----------ChhhhhhhCC--
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTS----------IRPYWRCYFP-- 83 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~~-- 83 (182)
.|+++|++|+|||||++.+.++.... ..++.+.... .+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999655544 5555543222 22223 3899999999543 2333333443
Q ss_pred -CCCEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CCCceEEEEec
Q 030122 84 -NTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTC 159 (182)
Q Consensus 84 -~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 159 (182)
..+++++++|.....+ ...+..|+.. .+.|+++++||+|+.................. .....+++.+|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 4578889999876532 2233344332 35899999999998643322222212111100 12345699999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~ 176 (182)
++++.|+.++++++.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999999875
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=1.6e-19 Score=139.74 Aligned_cols=158 Identities=13% Similarity=0.007 Sum_probs=102.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEEE--------------Ee------------CCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVETV--------------QY------------NNIKF 63 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~--------------~~------------~~~~~ 63 (182)
.+++|+++|++++|||||+++|.+..... +.-|+......+ .. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997532211 222222111110 01 14689
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHH
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~ 139 (182)
.+||+||+++|...+......+|++++|+|+++..........+..+ ... ...|+++++||+|+.+.... +++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 99999999999888888888999999999998643111222222222 211 23579999999999753222 112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
...+... ....++++++||++|+|+++++++|...+.
T Consensus 160 ~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred Hhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1111110 112568999999999999999999987643
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.82 E-value=1e-19 Score=130.19 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=96.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------------------------------cc----ccCCCceeeEEEEeCCEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------------------------------VS----TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------------------------------~~----~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|+.++|||||+.+|+.... .+ +.-|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 00 22233344455666889999
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-C--
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+++... | ......+... .. ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998877777777788999999999987421 1 1111221212 21 1346899999999997421 1
Q ss_pred -HHHHHH----hhcccccCCCceEEEEecccCCCCHHH
Q 030122 136 -DAAVSE----ALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++.. .+.........++++.+||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 122222 222222334568899999999999873
No 209
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=8.1e-22 Score=132.06 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=129.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+.-.+++|+|..|+|||+++.++..+.+.. +..|+| +..+...+ .-+++++||+.||++|..+..-|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3456799999999999999999999999988 899998 33344455 34688999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCHH--HHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDA--AVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|||+++..+|+...+|..++.... .....|+++..||||....-..+ ...+.+.. .+.-..++++|+|.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k---engf~gwtets~Ke 178 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK---ENGFEGWTETSAKE 178 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh---ccCccceeeecccc
Confidence 999999999999999999998875442 33557899999999986532111 12222211 12333599999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
+.++.|+.+.+++.+..
T Consensus 179 nkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILV 195 (229)
T ss_pred ccChhHHHHHHHHHHHh
Confidence 99999999999987764
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=7.6e-19 Score=133.29 Aligned_cols=159 Identities=16% Similarity=0.054 Sum_probs=114.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC----------Chh-hhhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS----------IRP-YWRC 80 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~-~~~~ 80 (182)
..+||+++|.||+|||||+|++++.+-.- ...|...-...+++++.++.++||+|..+ |.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 56999999999999999999999887443 33344444555666899999999999643 211 1233
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|.+++|+|++.+-+-++..- ..+.. ..+.++++++||+|+.+. ...++....+......-...+.+.+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~i--a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRI--AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHH--HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 4567999999999998766544332 12222 268899999999999875 2234444444433334456689999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+.+......
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999998876553
No 211
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.82 E-value=5.1e-19 Score=133.66 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=108.5
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+....+.+.+..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....++.+....
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 5678888888898999999999999999999999999999999999999986 357889999999999888
Q ss_pred CCCCCeEEEEeeCCCCCCC-----------------CCHHHH----HHhhcc-ccc-CCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA-----------------LDDAAV----SEALEL-HKI-KNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~-----------------~~~~~~----~~~~~~-~~~-~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||.|+... .+.+.. ...+.. ... ..+.+..+.|||.+..++..+|+
T Consensus 248 ~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~ 327 (342)
T smart00275 248 WFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFD 327 (342)
T ss_pred cccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHH
Confidence 8889999999999998632 111111 111111 111 23678889999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
.+.+.+.+
T Consensus 328 ~v~~~I~~ 335 (342)
T smart00275 328 AVKDIILQ 335 (342)
T ss_pred HHHHHHHH
Confidence 98887764
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=4.4e-19 Score=125.96 Aligned_cols=146 Identities=16% Similarity=0.060 Sum_probs=92.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----------------------------------ccCCCceeeEEEEeCCEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
||+++|.+|+|||||+++|+...-.- +..|.......+.+.+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997532110 11222233344555788999
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHh
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEA 142 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~ 142 (182)
+|||||+++|...+...+..+|++++|+|+++...-+. ...+. +.... ...++++|+||+|+.+.... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887666667889999999999987532111 11111 11211 22457889999998753211 112111
Q ss_pred hc--ccccCCCceEEEEecccCCCCHHH
Q 030122 143 LE--LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 143 ~~--~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+. .........+++.+||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 11 011111235699999999999875
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.2e-18 Score=139.76 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=102.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeC----C-------E-----EEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYN----N-------I-----KFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~----~-------~-----~~~i~d~~g~~~~ 74 (182)
+...|+++|++++|||||+++|.+..... ..+++|......... + . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 44589999999999999999998765433 223444332222110 0 1 2789999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--------------HH
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--------------~~ 137 (182)
..++...++.+|++++|+|+++ +.+++.+.. + .. .++|+++++||+|+...-. ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----L-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----H-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9998888899999999999987 445544321 1 11 4789999999999852100 00
Q ss_pred -----------HHHHhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 138 -----------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 138 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++...+....+ ....++++.+||.+|+|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 01111111111 024578999999999999999988764
No 214
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.81 E-value=6.7e-19 Score=132.05 Aligned_cols=136 Identities=25% Similarity=0.370 Sum_probs=109.4
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----------chHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+....+.+++..+.+||++|+...+..|..++.+++++|+|+|+++- .++.+....+..+....
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 56788888888988999999999999999999999999999999999999873 67888899999999888
Q ss_pred CCCCCeEEEEeeCCCCCCC------------------CCHHHH----HHhhcc-cccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA------------------LDDAAV----SEALEL-HKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~------------------~~~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||.|+... ...+.. ...+.. .....+.+..+.++|.+..++..+|+
T Consensus 225 ~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~ 304 (317)
T cd00066 225 WFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFD 304 (317)
T ss_pred cccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHH
Confidence 8889999999999996532 111111 111111 11124678889999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
.+.+.+...
T Consensus 305 ~v~~~i~~~ 313 (317)
T cd00066 305 AVKDIILQN 313 (317)
T ss_pred HHHHHHHHH
Confidence 998887653
No 215
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.81 E-value=2.5e-18 Score=126.04 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=79.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--cc-----------------------ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--VS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+|+++|++|+|||||+++|+.... .. +..++......+.+++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999984211 10 11122233446677899999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|......+++.+|++|+|+|+++.... ....++... . ..++|+++++||+|+...
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCC
Confidence 887777778899999999999875332 222333322 2 257899999999998654
No 216
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.1e-18 Score=119.79 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=123.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCC---CCCEEEEEEeC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTEAVIYVVDS 94 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~~i~v~d~ 94 (182)
-.|+++|+.+||||+|+.+|..+.+....+.+..+.....+..-...++|.|||++.+.....++. .+-++|||+|.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDS 118 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEec
Confidence 479999999999999999999997777777777777777776667899999999999987777777 68999999997
Q ss_pred CC-cchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---------------------------
Q 030122 95 SD-TDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALE--------------------------- 144 (182)
Q Consensus 95 ~~-~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--------------------------- 144 (182)
.. .....+...++..++... ....+|++++.||.|+..++..+-+.+.+.
T Consensus 119 a~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tl 198 (238)
T KOG0090|consen 119 ATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTL 198 (238)
T ss_pred cccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 54 344777778877777665 457789999999999987765543332220
Q ss_pred --------ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 145 --------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 145 --------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
...+....+.+.++|++++ +++++-+|+.+.+
T Consensus 199 g~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 199 GKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0011224577899999998 8999999997753
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=5.9e-19 Score=123.71 Aligned_cols=145 Identities=17% Similarity=0.073 Sum_probs=95.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC----------c---------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+++|+++|..++|||||+++|+.... . .+.-|+......+.+++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999985310 0 0222222222333446788999999999888776
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccccCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+...-.- .....+..+.. .++| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 67778899999999998764321 22222233322 4566 7899999998643221 1 23333322223334
Q ss_pred ceEEEEecccCCCCH
Q 030122 152 QWAIFKTCAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~i 166 (182)
.++++.+||.+|.++
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999985
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=3e-18 Score=122.55 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=98.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc-----------------ccC-------CCceee-----------------EEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS-----------------TIP-------TIGFNV-----------------ETVQ 57 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~-----------------~~~-------t~~~~~-----------------~~~~ 57 (182)
||+++|+.++|||||+++|..+.+.+ +.. .+|++. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999755432 001 111111 1122
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+..+.++|+||+++|.......+. .+|++++|+|+..... .....++..+.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence 35678999999999988654444443 6899999999876533 222223232322 4689999999999865322
Q ss_pred H----HHHHHhhccccc---------------------CCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 136 D----AAVSEALELHKI---------------------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 ~----~~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
. .++.+.+..... ....+++|.+|+.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2 223333332111 223458999999999999998877643
No 219
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.80 E-value=8.8e-19 Score=124.92 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=103.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEe-CCEEEEEEECCCCCCChh-----hhhhhCCCCCEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~~ 88 (182)
||+++|+.||||||+.+-+.++-.+. ..+|..+....+.. ....+.+||.||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999888665433 56888888888876 778999999999976543 356788999999
Q ss_pred EEEEeCCCcch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHH----Hhhccccc--CCCceEEEEec
Q 030122 89 IYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS----EALELHKI--KNRQWAIFKTC 159 (182)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~S 159 (182)
|||+|+...+- +..+...+..+.+.. +++.+.++++|+|+..+....++. +.+..... ....+.++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999984432 333344444454444 799999999999997643322221 11111111 11147899999
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q 030122 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~ 179 (182)
-.+ +.+-+.+..+++.+..
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TTS-THHHHHHHHHHHTTST
T ss_pred CcC-cHHHHHHHHHHHHHcc
Confidence 998 6899999999887653
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.80 E-value=5.7e-19 Score=115.98 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=90.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCCh----hhhhhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR----PYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~----~~~~~~~~~~~~~i~v~d~ 94 (182)
||++||+.|||||||+++|.+.... +..|-.+.+. =.++||||-.-.. .-......+||.+++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 8999999999999999999876653 3333222111 1348999954322 2222234589999999999
Q ss_pred CCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 95 SDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+++.+ |..-. .. ..+.|+|-|+||+|+.. ..+.+...+.+.....+ .+|.+|+.+|+|++++.++
T Consensus 74 t~~~~~~pP~f------a~---~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 74 TEPRSVFPPGF------AS---MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCccCCchh------hc---ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 98643 33211 11 25689999999999983 33334444444444443 2799999999999999988
Q ss_pred HH
Q 030122 173 LS 174 (182)
Q Consensus 173 l~ 174 (182)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 221
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=1.1e-18 Score=135.01 Aligned_cols=160 Identities=13% Similarity=-0.004 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC---c-c--ccCCCceeeEEEEe------------------C--------CE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV---V-S--TIPTIGFNVETVQY------------------N--------NI 61 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~---~-~--~~~t~~~~~~~~~~------------------~--------~~ 61 (182)
...+++|+++|+.++|||||+.+|.+... . + +.-|+......+.+ . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 34568999999999999999999965311 1 1 22333322111110 0 25
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH----
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---- 137 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---- 137 (182)
.+.+||+||+++|..........+|++++|+|++++.........+..+ ... ...|+++|+||+|+.+.....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7899999999888766655666789999999998643111111111112 111 234789999999997643221
Q ss_pred HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+.. .....++++.+||++|.|+++++++|.+.+.
T Consensus 163 ~i~~~l~~--~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKG--TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhcc--ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12111110 0123467999999999999999999988654
No 222
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.3e-18 Score=130.21 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=109.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~ 83 (182)
.-+|++++|.||+|||||+|.|.+.+..- ...|-.+-...+...++++.+.||+|-..-.. -....+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 45799999999999999999999887543 44455577778888999999999999754322 1233466
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+||.+++|+|.+.+.+-.+.... . ....+.|+++|.||.|+........+ .. ....+++.+|+++|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~-~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-------~~-~~~~~~i~iSa~t~ 361 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALI-E-----LLPKKKPIIVVLNKADLVSKIELESE-------KL-ANGDAIISISAKTG 361 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHH-H-----hcccCCCEEEEEechhcccccccchh-------hc-cCCCceEEEEecCc
Confidence 89999999999986322222111 1 12367999999999999875432222 01 11225999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
+|++.+.+.|.+.+..
T Consensus 362 ~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 362 EGLDALREAIKQLFGK 377 (454)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999998877654
No 223
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=1.3e-18 Score=140.16 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=103.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC---Ccc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE---VVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~---~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
-|+++|+.++|||||+++|.+.. +.+ +..|+......+.. .+..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998633 222 34555444444444 456789999999999977777778999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHHHHHHhhccc--ccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|+++.-. ......+. ++.. .++| +++|+||+|+.+....+.+...+... .......+++.+||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99886321 11112222 2222 3455 57999999997532222222221111 0111245799999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999986543
No 224
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.79 E-value=3e-19 Score=122.27 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=82.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhh---hCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRC---YFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~~i~ 90 (182)
.-.|+++|+.|||||+|+.+|..+...+....+..+. ...+ ....+.++|+|||++.+..... +...+.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 3479999999999999999999997766444443222 2222 4568899999999999874443 4778999999
Q ss_pred EEeCCC-cchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCCCHHHHHHh
Q 030122 91 VVDSSD-TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEA 142 (182)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~~~~~~~~~ 142 (182)
|+|.+. +..+.+..+++..++.... ...+|+++++||+|+..+.....+...
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~ 136 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKL 136 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHH
Confidence 999874 4557777777777765432 367899999999999987665444333
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.78 E-value=1.3e-17 Score=122.82 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=81.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...... +..++......+.+.+..+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110 122333444566678899999999999888777
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..++..+|++++|+|+++.........| ..+. ..++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH----HcCCCEEEEEECCccCCC
Confidence 88888999999999999876554332222 2222 257899999999998753
No 226
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.78 E-value=1.8e-17 Score=121.67 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=80.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--c-------------------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--V-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++|+.... . .+.-|+......+.+++..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974111 0 0222333445667778999999999999988888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+..+++.+|++++|+|..+...-+. ...+..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8889999999999999876533222 223333322 5789999999999874
No 227
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=9.7e-18 Score=132.95 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc--CCCc-------------------c----ccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM--GEVV-------------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~--~~~~-------------------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.-+|+++|++++|||||+++|+. +... + +..++......+.++++.+++|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 34899999999999999999973 1110 0 111222333456678899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+|......+++.+|++|+|+|+++.... ....++... ...++|+++++||+|+...
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 99988777788999999999999875322 222333322 2268999999999998754
No 228
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=2e-17 Score=135.79 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=88.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC-----------------c----cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV-----------------V----STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~-----------------~----~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+|+++|+.|+|||||+++|+.... . .+..|+......+.+.+..+++|||||+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 445899999999999999999985211 0 1444555666677888999999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+..+++.+|++++|+|.++.........| ..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence 88889999999999999999887666544333 33322 47899999999998864
No 229
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=2.4e-18 Score=133.18 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=117.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
....+||+++|+.|+|||||+-.+....|.+ ..+-.....-..++ ..+...+.|++..+..+......++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3457999999999999999999999999887 22222211111222 56678999998777766666777899999999
Q ss_pred EEeCCCcchHHHHHH-HHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCH------HHHHHhhcccccCCCceEEEEecccC
Q 030122 91 VVDSSDTDRIQTAKE-EFHAILEEE-ELKGAVALIFANKQDLPGALDD------AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 91 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
||+.+++++++.+.. |+..+.+.. ...++|+|+|+||+|....... ..++.++.... .+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE------tciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE------TCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH------HHHhhhhhh
Confidence 999999999998875 555554432 1257899999999999764332 22333332221 289999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030122 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~ 178 (182)
-.++.++|....+++.
T Consensus 160 ~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhHhhhhhhhheee
Confidence 9999999998887654
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.8e-17 Score=130.09 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=108.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~ 85 (182)
..+|+++|.||+|||||+|++++....- ..-|.+-....+.+++..+.+.|.||-....+ ....|+ .++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 4679999999999999999999866444 44455455556666888899999999765433 233333 357
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++|.|+|+++-++ .....-++++ .+.|++++.|++|.... .+.+.+.+.++. |++.+||+
T Consensus 83 D~ivnVvDAtnLeR---nLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATNLER---NLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccchHHH---HHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 99999999998554 2333334444 57899999999998653 234556666554 49999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+|.|++++.+.+.+...+
T Consensus 148 ~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 148 RGEGLEELKRAIIELAES 165 (653)
T ss_pred cCCCHHHHHHHHHHhccc
Confidence 999999999998875543
No 231
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-17 Score=120.86 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=102.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee----EEEEeCCEEEEEEECCCCCC------C-------hh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV----ETVQYNNIKFQVWDLGGQTS------I-------RP 76 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~d~~g~~~------~-------~~ 76 (182)
..+-+.|++||+||+|||||.|++.+.+............ ..+..+...+.++||||--. + +.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4567899999999999999999999999877322222112 22333788999999999421 1 11
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-----------------HHH
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----------------AAV 139 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-----------------~~~ 139 (182)
.| .....||.++.++|+++....-. ...++.+..+ ..+|-++|+||.|....... -++
T Consensus 149 ~~-~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 149 PR-DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HH-HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 22 23567999999999996432111 1112222222 68899999999998753211 112
Q ss_pred HHhhcccc----c-CCC----ceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHK----I-KNR----QWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~----~-~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.+.... . ... --.+|.+||++|+|++++-+||..++.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 22221111 0 000 124899999999999999999987654
No 232
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.76 E-value=1.9e-17 Score=120.08 Aligned_cols=150 Identities=23% Similarity=0.201 Sum_probs=106.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCC----hh---hhhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI----RP---YWRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~----~~---~~~~~~~~~~~ 87 (182)
.|.++|.||+|||||++.+...+..- ...|+......+.+ +...+.+-|+||--.- +. .....++.|+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 47899999999999999999766433 34444455666666 3444999999995332 22 23345678999
Q ss_pred EEEEEeCCCc---chHHHHHHHHHHHHhc-cCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEeccc
Q 030122 88 VIYVVDSSDT---DRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++||+|++.+ .-++.+..++.++-.+ ..+.+.|.++|+||+|+++.... .++...+... .++.+||+
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA~ 350 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSAK 350 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeeec
Confidence 9999999988 6666666655555333 24578899999999999743321 3444443322 59999999
Q ss_pred CCCCHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSN 175 (182)
Q Consensus 162 ~~~~i~~~~~~l~~ 175 (182)
+++|+.++++.+-+
T Consensus 351 ~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 351 SGEGLEELLNGLRE 364 (366)
T ss_pred cccchHHHHHHHhh
Confidence 99999999887754
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=7.2e-18 Score=130.11 Aligned_cols=159 Identities=17% Similarity=0.090 Sum_probs=102.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC----------c---------cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV----------V---------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|+.++|||||+++|++... . .+.-|+......+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45578999999999999999999986310 0 0222222222223336678899999999988
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCHH-----HHHHhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDA-----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~~-----~~~~~~~~~~~ 148 (182)
..........+|++++|+|++....- .....+..+.. .++| +++++||+|+.+..... ++.+.+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 76666667889999999998764221 12222222322 3677 67899999987432221 22222222222
Q ss_pred CCCceEEEEecccCCC--------CHHHHHHHHHHHH
Q 030122 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i 177 (182)
....++++.+||++|. ++.++++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2335789999999983 5777777776654
No 234
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=6.2e-17 Score=118.11 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=110.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCC------Ch--hhhhhhC-CCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS------IR--PYWRCYF-PNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~------~~--~~~~~~~-~~~ 85 (182)
..|++.|.||+|||||++.+.+.+..- ...|.+++...+..+..+++++||||--+ .. ......+ +=.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~ 248 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLA 248 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhc
Confidence 489999999999999999999876433 55666699999999999999999999532 11 0111111 235
Q ss_pred CEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++++|++|++.. -+++....++.++... .+.|+++|.||+|..+....+++........ ......+++..+
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~ 321 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISATKG 321 (346)
T ss_pred CeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeeeeh
Confidence 889999999765 4677878888888665 5599999999999987655555544432222 222667788888
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
.+++.+-..+....
T Consensus 322 ~~~d~~~~~v~~~a 335 (346)
T COG1084 322 CGLDKLREEVRKTA 335 (346)
T ss_pred hhHHHHHHHHHHHh
Confidence 88887776666553
No 235
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=109.46 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=105.8
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCC-ccccCCCc--eeeEEEEeCCEEEEEEECCCC----------CCChh
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VSTIPTIG--FNVETVQYNNIKFQVWDLGGQ----------TSIRP 76 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~----------~~~~~ 76 (182)
..-|+.....|+|+|.+|+|||||+|.|++++. ...+.|-| .....+.+.. .+.++|.||- +....
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHH
Confidence 345666777999999999999999999999773 33444444 3333344422 3889999993 22233
Q ss_pred hhhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccC
Q 030122 77 YWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIK 149 (182)
Q Consensus 77 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~ 149 (182)
+...|++. -.++++++|+..+-.-.+. .+.+.+.. .++|+++++||+|....... ..+.+.+.....
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~- 169 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP- 169 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-
Confidence 44455553 4678889998765442221 22222222 68999999999999864333 233333332222
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
....++.+|+.++.|++++...|.+.+...
T Consensus 170 -~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 170 -DDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred -ccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 222288889999999999999998877653
No 236
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=5.7e-17 Score=125.25 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcC-------CC---c-----c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMG-------EV---V-----S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~-------~~---~-----~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|.+++|||||+++|++. .+ . + +.-|+......+..++..+.++||||+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456789999999999999999999862 10 0 0 12222222222333667899999999988
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.... + ++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 76666666788999999999886422 122223332222 467865 57999999743222 1 2222222111
Q ss_pred cCCCceEEEEecccCCC----------CHHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGE----------GLFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i 177 (182)
.....++++.+|+.+|. ++.++++.+...+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11235789999999984 6677777776543
No 237
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-17 Score=123.29 Aligned_cols=136 Identities=26% Similarity=0.417 Sum_probs=110.7
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 114 (182)
+.+|.|+....+.+++..+.+.|++||...+..|.++|.+++++|||+++++ ..++.+....|..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 6788999999999999999999999999999999999999999999999875 356788888999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCC-----------------CHHHH----HHhhcc-cccCCCceEEEEecccCCCCHHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGAL-----------------DDAAV----SEALEL-HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~~-----------------~~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
+..+.++|+++||.|+..+. ..++. ...+.. ...+.+.+.++.|+|.+..+++.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 99999999999999997531 11111 111111 111236788999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+...
T Consensus 339 v~d~Ii~~ 346 (354)
T KOG0082|consen 339 VTDTIIQN 346 (354)
T ss_pred HHHHHHHH
Confidence 98887643
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.9e-17 Score=124.49 Aligned_cols=147 Identities=18% Similarity=0.072 Sum_probs=92.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCC------------C----c-c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGE------------V----V-S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~------------~----~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+...+++|+++|..++|||||+++|++.. . . + +.-|+......+..++..+.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34567899999999999999999997420 0 0 0 22233332233333677899999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCHH-----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDDA-----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~~-----~~~~~~~~~~ 147 (182)
|..........+|++++|+|+.....-+ ....+..+.. .++|.+ +++||+|+.+..... ++...+....
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8766666667899999999998642211 2222222322 356755 689999987532211 2222222111
Q ss_pred cCCCceEEEEecccCCC
Q 030122 148 IKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~ 164 (182)
.....++++.+||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 12234789999999875
No 239
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.8e-17 Score=117.11 Aligned_cols=108 Identities=15% Similarity=0.019 Sum_probs=77.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----------------------ccCCCceeeEEEEe-----CCEEEEEEECCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----------------------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----------------------~~~t~~~~~~~~~~-----~~~~~~i~d~~g~ 71 (182)
+|+++|+.|+|||||+++|+...... ..-++......+.+ ..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 58999999999999999998643221 00111111122222 2478999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++......++..+|++++|+|.++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888899999999999987765533 333333322 358999999999985
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=3.6e-17 Score=115.17 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=93.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce---ee--EEEEe-CCEEEEEEECCCCCCChhhh-----hhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF---NV--ETVQY-NNIKFQVWDLGGQTSIRPYW-----RCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~---~~--~~~~~-~~~~~~i~d~~g~~~~~~~~-----~~~~~~ 84 (182)
++||+++|.+|+|||||+|.+++..... ...+.+. .. ..+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3799999999999999999999865432 2222221 11 11111 23478999999975432222 223567
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---------HHHHHHhhccc---ccC---
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELH---KIK--- 149 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---------~~~~~~~~~~~---~~~--- 149 (182)
+|.++++.+ .++.....++...+.. .+.|+++|+||+|+..... .+++.+.+... ...
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 898888753 2333333333333333 3679999999999853211 12221111110 000
Q ss_pred CCceEEEEeccc--CCCCHHHHHHHHHHHHhcC
Q 030122 150 NRQWAIFKTCAI--KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~i~~~ 180 (182)
...-++|-+|+. .+.++.++.+.+.+.+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 123368999998 5789999999988877643
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=9.7e-17 Score=125.28 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=99.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC-------------------------------c-c--ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV-------------------------------V-S--TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~-------------------------------~-~--~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|+.++|||||+.+|+.... . + +.-|+......+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4568999999999999999999874110 0 0 2223333334455578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHH-------HHHHHHHHHHhccCCCCC-eEEEEeeCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQ-------TAKEEFHAILEEEELKGA-VALIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~ 132 (182)
..+.++|+||+++|.......+..+|++|+|+|+++ ..|+ .....+... . ..++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCCc
Confidence 899999999999999888888999999999999986 2232 222222222 1 1456 5788999999762
Q ss_pred CC-C-------HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 133 AL-D-------DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 133 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.. . .+++...+....+....++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 122333333223333457899999999999853
No 242
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=5e-16 Score=116.54 Aligned_cols=154 Identities=19% Similarity=0.096 Sum_probs=111.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChh--hh------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP--YW------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~--~~------~~~~~ 83 (182)
....|+++|-.|+|||||+|+|.+..... .+.|.......+.+ .+..+.+.||-|--+.-+ +. .....
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 44689999999999999999999766432 77888887888888 468899999999543322 11 11234
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|.+++|+|++++.-.+.+... ..++......++|+++|.||+|+...... ........ . ..+.+||++|
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~----~-~~v~iSA~~~ 341 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGS----P-NPVFISAKTG 341 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcC----C-CeEEEEeccC
Confidence 79999999999999655555444 33444444467999999999998754321 11111110 1 4899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030122 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~ 178 (182)
+|++.+.+.|.+.+.
T Consensus 342 ~gl~~L~~~i~~~l~ 356 (411)
T COG2262 342 EGLDLLRERIIELLS 356 (411)
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999988776
No 243
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=4.8e-16 Score=100.43 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=72.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~~~ 85 (182)
||+++|.+|+|||||+|.|++..... ...|.......+.+.+..+.++||||-..-.. .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 69999999999999999999864333 33444455566677888999999999644211 123334789
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
|++++|+|..++.. +.....+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999776322 2222332333 1 68999999998
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.9e-17 Score=128.82 Aligned_cols=148 Identities=19% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCC----------------c-c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEV----------------V-S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~----------------~-~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|++++|||||+++|++... . + +.-|+......+.+++..+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 345678999999999999999999995211 0 1 22222222333445778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+.+...- ....++..+.. .++| +++++||+|+.+.... + ++...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 877667777899999999998865322 22333333322 4677 7889999999753221 1 2222222222
Q ss_pred cCCCceEEEEecccCCCC
Q 030122 148 IKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~ 165 (182)
+....++++.+|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 233568899999988753
No 245
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=7.1e-17 Score=125.18 Aligned_cols=147 Identities=18% Similarity=0.102 Sum_probs=94.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c--ccCCCcee--eEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S--TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~--~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|.+++|||||+++|++.... + ..+.+.++ ...+..++..+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 455689999999999999999999964110 0 11222222 2233336778899999999887
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 6666666788999999999876432 222222232322 4678 7789999999753221 1 22222222222
Q ss_pred CCCceEEEEecccCCCC
Q 030122 149 KNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (182)
....++++.+|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999998864
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.72 E-value=2.3e-16 Score=123.24 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=100.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--c-------------------------c-------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--V-------------------------S-------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~~ 60 (182)
..+++|+++|+.++|||||+.+|+.... . + +.-|+......+.+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4568999999999999999999875110 0 0 2223333344455578
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---H---HHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAV-ALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~ 133 (182)
..+.++|+||+.+|.......+..+|++++|+|++...- | ......+..+.. .++| +++++||+|....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence 899999999999998877777889999999999886420 1 122222222221 4665 6799999995421
Q ss_pred ----CCH----HHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 134 ----LDD----AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
... +++...+....+....++++.+|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 112 23333333333333468899999999999864
No 247
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.71 E-value=5.5e-16 Score=123.07 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=78.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc--CCCcc-----------------------ccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.-+|+++|++++|||||+++|+. +.... +.-++......+.+++..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 44899999999999999999863 11110 111111233456668899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..|......+++.+|++|+|+|+++... .....++... .. .++|+++++||+|+..
T Consensus 91 ~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 91 EDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECccccC
Confidence 9888766677889999999999886421 1223333322 22 5789999999999864
No 248
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.71 E-value=8.1e-16 Score=126.30 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=83.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--c-------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 76 (182)
-+|+++|.+++|||||+++|+..... . +.-|+......+.+.+..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 37999999999999999999742110 0 22233344556777899999999999999888
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+..+++.+|++++|+|+.+....+... .+..+.. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8888899999999999998765544332 2233322 46899999999998754
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1.7e-16 Score=122.96 Aligned_cols=147 Identities=15% Similarity=0.043 Sum_probs=94.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--c----------------------------------ccCCCceeeEEEEeCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--S----------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
+||+++|+.++|||||+.+|+...-. . +.-|+......+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999742210 0 12223344445555788
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHH
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAV 139 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~ 139 (182)
.+.++||||+++|.......+..+|++++|+|+.....-+... .+..+ ... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999988765566778999999999987543211111 11111 111 2346899999999975321 1222
Q ss_pred HHhhcc--cccCCCceEEEEecccCCCCHHH
Q 030122 140 SEALEL--HKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+.+.. .......++++.+||++|+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 11111246799999999999885
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.9e-16 Score=120.01 Aligned_cols=159 Identities=17% Similarity=0.088 Sum_probs=101.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....+++|+++|..++|||||+++|++.... + +.-|+......+..++..+.+.||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3456789999999999999999999863110 0 22222222222333677899999999988
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEE-EEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|.......+..+|++++|+|+..... ......+..+.. .++|.+ +++||+|+.+.... + ++...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 76666666789999999999876432 222223332322 467876 58999999742221 1 2222222222
Q ss_pred cCCCceEEEEecccCCC----------CHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGE----------GLFEGMDWLSNT 176 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 176 (182)
+....++++.+||++|. ++..+++.|...
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 22345789999999875 456666666553
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=1.4e-16 Score=125.25 Aligned_cols=152 Identities=14% Similarity=0.039 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------------------ccCCCceeeEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|+...-.- +.-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4567899999999999999999998532110 1112223333445
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-- 135 (182)
+++..+.++||||++.|.......+..+|++++|+|+...-.-+....+ . +.... ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHh--CCCceEEEEEeeccccchhHH
Confidence 5778999999999998865555557899999999998764211111111 1 11111 2247899999999974321
Q ss_pred HHHHHHhhcc--cccC-CCceEEEEecccCCCCHHHH
Q 030122 136 DAAVSEALEL--HKIK-NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~ 169 (182)
..++...+.. .... ....+++.+||++|+|+.+.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223222211 0111 23567999999999999764
No 252
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=1.6e-16 Score=113.33 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-----------------ccCCCceeeEEEEeC----------CEEEEEEECC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-----------------TIPTIGFNVETVQYN----------NIKFQVWDLG 69 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~i~d~~ 69 (182)
+|+++|+.++|||||+.+|+..... . +.-|+......+.+. .+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999853211 0 122222222223332 7889999999
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|+..|......+++.+|++++|+|+++....+... .+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCcc
Confidence 99999998899999999999999998876554422 2222222 468999999999986
No 253
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.7e-16 Score=119.62 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=111.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+..-|.++|+..-|||||+..+-...... -.-|-.+..+.+.. ....+.|+|||||+-|..|.....+-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34579999999999999999999877655 12222244444444 3468999999999999999999899999999
Q ss_pred EEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccC
Q 030122 90 YVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIK 162 (182)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 162 (182)
+|+++++. .+.+.+. +....+.|+++++||+|.++.. ++.+..++....+ -.+...++.+||++
T Consensus 84 LVVa~dDGv~pQTiEAI~--------hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 84 LVVAADDGVMPQTIEAIN--------HAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEccCCcchhHHHHHH--------HHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 99999874 3433322 1223799999999999999653 3333333322222 23568899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~i~~~~~~l~~~ 176 (182)
|+|+.+++..+.-.
T Consensus 155 g~Gi~eLL~~ill~ 168 (509)
T COG0532 155 GEGIDELLELILLL 168 (509)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999887643
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=1.8e-15 Score=118.10 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=99.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC------C------C-----cc--ccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG------E------V-----VS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~------~------~-----~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+++|+++|..++|||||+++|.+. . . .+ +.-|+......+..++..+.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456789999999999999999999732 1 0 01 222333333334446778999999999988
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-HHHH----Hhhccccc
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-AAVS----EALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~~~~----~~~~~~~~ 148 (182)
..........+|++++|+|+.+...- .....+..+.. .++| +++++||+|+.+.... +.+. +.+.....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76655566789999999998764321 12222222222 4678 5788999999753221 1121 22211112
Q ss_pred CCCceEEEEeccc---CCCC-------HHHHHHHHHHHH
Q 030122 149 KNRQWAIFKTCAI---KGEG-------LFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i 177 (182)
....++++.+|+. +|.| +.++++.+...+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2335788888876 4554 667777776554
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=109.66 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=108.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhhhhhCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFP 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~ 83 (182)
.....+++++|.|++|||||+++|.+.+-.. .+.|.......+.|++..+++.|+||--.-. .......+
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3445689999999999999999999866433 5566668888899999999999999743221 23455678
Q ss_pred CCCEEEEEEeCCCcch-HHHHHHHHHH----------------------------------------HHhccCC------
Q 030122 84 NTEAVIYVVDSSDTDR-IQTAKEEFHA----------------------------------------ILEEEEL------ 116 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~~~------ 116 (182)
+||++++|+|+..... .+-+...+.. ++.....
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999875333 2222221111 1111000
Q ss_pred ------------------CCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 117 ------------------KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 117 ------------------~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.=+|.+.|.||.|+......+.+.+.. .++.+||..+.|++++.+.+.+.+.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 126999999999998743333332222 4999999999999999999988764
No 256
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=112.14 Aligned_cols=158 Identities=19% Similarity=0.114 Sum_probs=105.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCCh-------hhhhhhCCCCCEE
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~~ 88 (182)
|.++|.|++|||||++.+...+..- ...|+-.+...+.+ ..-.|.+-|+||--.-. ......++++.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 6799999999999999999766433 33444455555555 55679999999853211 1233446689999
Q ss_pred EEEEeCCCcch---HHHHHHHHHHHHhc-cCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDR---IQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|+|++..+. .++......++..+ ..+.+.|.++|+||+|+..+.+ .+.+.+.+... ......++ +|+.++
T Consensus 242 ~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-ISa~t~ 318 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-ISALTR 318 (369)
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-eehhcc
Confidence 99999986543 55555555555444 3457899999999999665432 33333333221 11111233 999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++...+.+.+.+.
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999988877653
No 257
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.5e-15 Score=117.25 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=114.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC------------------ccccCCCceeeEEEEeCC---EEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV------------------VSTIPTIGFNVETVQYNN---IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~i~d~~g~~~~~~~ 77 (182)
++.+|-+-.=|||||..+|+.... .++.-|+......+.|.. +.++++|||||.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 599999999999999999986321 013334445555666655 99999999999999988
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~ 154 (182)
-...+..|+++++|+|++..---+....++..+ + .+..+|.|+||+|++.+.... ++.+.+... ...
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~ 211 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAE 211 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccc
Confidence 888888999999999999876666666655554 2 678999999999999864432 233333333 336
Q ss_pred EEEecccCCCCHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++.+||++|.|+.++++.+++.+.
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCC
Confidence 999999999999999999998764
No 258
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=2.7e-15 Score=112.15 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=53.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEEE-------------------E-eCCEEEEEEECCCC-
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVETV-------------------Q-YNNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~-------------------~-~~~~~~~i~d~~g~- 71 (182)
|+++|.|++|||||++++++..... ..|+.|...... . ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 234444222110 0 13478999999997
Q ss_pred ---CCChhhhhh---hCCCCCEEEEEEeCC
Q 030122 72 ---TSIRPYWRC---YFPNTEAVIYVVDSS 95 (182)
Q Consensus 72 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 95 (182)
++++.+... .+++||++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444333 488999999999986
No 259
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=5.6e-16 Score=126.18 Aligned_cols=152 Identities=14% Similarity=0.018 Sum_probs=95.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------------------ccCCCceeeEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------------------TIPTIGFNVETV 56 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------------------~~~t~~~~~~~~ 56 (182)
.....++|+++|++++|||||+++|+.....- +.-|+......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 45567899999999999999999999633110 111222233344
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD- 135 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~- 135 (182)
.+.+..+.++||||++.|.......+..+|++++|+|+.....-+ ....+..+... ...++++++||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh---CCCeEEEEEEecccccchhH
Confidence 557788999999999887665555678999999999987542211 11111111111 2368899999999874211
Q ss_pred -HHHHHHhhcc--cccCCCceEEEEecccCCCCHHH
Q 030122 136 -DAAVSEALEL--HKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 -~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++...+.. ........+++.+||++|.|+.+
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1222222210 01111345699999999999874
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-15 Score=114.51 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Ccc---ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VVS---TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~~---~~~t~~~~~~~~~~~~ 60 (182)
..+++++|+|+..+|||||+.+|+.+. ..+ +.-|+......+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457899999999999999999998621 111 3334434444555588
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+.|.|+||+..|-..+....++||++|+|+|+.+.+- |. ..... .++.. .+.-.-+|+++||+|..+-.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH--~~La~-tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH--AFLAR-TLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH--HHHHH-hcCCceEEEEEEcccccccC
Confidence 899999999999998888888999999999999987631 11 11111 11111 12345778889999998621
Q ss_pred C--HHHH----HHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 135 D--DAAV----SEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 135 ~--~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+ .+++ ...+....+....++++.+|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 1222 23222333344578899999999999865
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=7.8e-15 Score=103.26 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=100.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------h---hhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------Y---WRCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~---~~~~ 81 (182)
++|+++|.+|+||||++|.+++..... ...|.........+.+..+.++||||-..... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876543 23455556666667888999999999644311 1 1122
Q ss_pred CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---ccccCCCceEEEE
Q 030122 82 FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---LHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (182)
..+.|++++|+++.+.. ....+.+++..++... .-.++++++|++|.......++...... ....+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 45789999999987622 2334444444443321 2258899999999876443333211110 0011111212333
Q ss_pred ec-----ccCCCCHHHHHHHHHHHHhc
Q 030122 158 TC-----AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~S-----a~~~~~i~~~~~~l~~~i~~ 179 (182)
.+ +..+.++.++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 45678999999999888775
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=7.4e-15 Score=120.65 Aligned_cols=113 Identities=16% Similarity=0.073 Sum_probs=83.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC--------c-------------cccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
.-.+|+++|.+++|||||+++|+.... . .+.-|+......+.+++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 345799999999999999999974210 0 1333444555667778999999999999888
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+...++.+|++++|+|+.+...-+.. ..+..+.. .++|.++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 77888888999999999998875433322 22233322 56899999999999854
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=7.1e-15 Score=120.66 Aligned_cols=106 Identities=18% Similarity=0.099 Sum_probs=80.1
Q ss_pred EecCCCChHHHHHHhhcCCCc---------------------cccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh
Q 030122 23 FFIDNFGNLCDTDRLQMGEVV---------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 iG~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
+|++++|||||+++|...... ++..|++.....+.+.+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999542110 03345555566777789999999999999887778888
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..+|++++|+|++..........| ..+.. .++|+++|+||+|....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH----cCCCEEEEEECCCCCCC
Confidence 8999999999999886655443322 33322 47899999999998754
No 264
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.5e-15 Score=113.48 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=113.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
.+..-|-++|+..=|||||+..|-+..... -.-|-.+....+.. .+..++|.|||||.-|..|......-+|.+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 355679999999999999999999877654 11122222333333 77899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----CCCceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 166 (182)
|+...|.--=+.. +..++....+.|+++.+||||.+++. .+.+.+++..... -...+.++++||++|+|+
T Consensus 231 VVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 9988764221111 12233344799999999999988764 4444444433222 236788999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
+.+-+.++-..
T Consensus 305 ~~L~eaill~A 315 (683)
T KOG1145|consen 305 DLLEEAILLLA 315 (683)
T ss_pred HHHHHHHHHHH
Confidence 99888876543
No 265
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=4.8e-15 Score=112.87 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=116.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC--------------c----cccCCCceeeEEEEe-----CCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV--------------V----STIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~--------------~----~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~ 75 (182)
+..+|-+-.=|||||..|++.... . ++.-|+..+...+.| +.+.++++|||||-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 478888899999999999986211 0 133444444455555 45899999999999998
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCCCc
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 152 (182)
..-...+..|.++++|+|++..-.-+.+.+.+..+ ..+.-++-|+||+|++.+... .++.+.+++....
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d--- 162 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD--- 162 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch---
Confidence 77777788899999999999877777777766655 257899999999999986442 4566666666443
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.+|||+|.||+++++.+++.+-
T Consensus 163 --av~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 163 --AVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred --heeEecccCCCHHHHHHHHHhhCC
Confidence 899999999999999999998764
No 266
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=5e-16 Score=118.75 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=117.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCC----hhh----h-hhhCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI----RPY----W-RCYFPNTE 86 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----~~~----~-~~~~~~~~ 86 (182)
.+++.|-|++|||||++.+...+... ..+|.++....+.++...++++||||-.+. +.. . -...+--.
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLra 249 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRS 249 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhh
Confidence 79999999999999999998766433 445555878888888889999999995432 111 1 11112236
Q ss_pred EEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+++|+.|++.. .|.....++|+.+.-. ..+.|+|+|+||+|.....+..+..+.+.........++++++|+.+.+
T Consensus 250 aVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 250 AVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred hheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence 89999999865 5677778888887554 3799999999999998766554444333333334455889999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|+.++-...++.++.
T Consensus 328 gVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 328 GVMDVRTTACEALLA 342 (620)
T ss_pred ceeeHHHHHHHHHHH
Confidence 999998888877764
No 267
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=5.6e-15 Score=115.33 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc---c---ccCCCceeeEEE---------------Ee---------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV---S---TIPTIGFNVETV---------------QY--------------- 58 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~---~---~~~t~~~~~~~~---------------~~--------------- 58 (182)
..+++|+++|+...|||||+..|.+.... + +.-|+...+... .+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999974321 1 333332111111 00
Q ss_pred ---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 59 ---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 ---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
....+.++|+||++.|-.........+|++++|+|+.+..........+..+ ... .-.++++++||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHH
Confidence 0246899999999998776666678999999999998642111112222221 211 2347899999999975322
Q ss_pred HHH----HHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 136 DAA----VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 136 ~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++ +...+.. ......+++.+||++|+|++.+++.|.+.+.
T Consensus 189 ~~~~~~ei~~~l~~--~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKG--TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHh--hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222 2221111 1124568999999999999999999886543
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=4.2e-14 Score=116.23 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=80.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC--------c-------------cccCCCceeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV--------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~--------~-------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
--+|+++|.+++|||||+++|+.... . .+.-|+......+.+.+..+.++||||+.+|.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 34799999999999999999973111 0 12233334445567788999999999998876
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
......++.+|++++|+|....-.-+... .+..+.. .++|.++++||+|+.+.
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH----cCCCEEEEEECCCCCCC
Confidence 66666778899999999987654333322 2233322 46899999999998753
No 269
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.61 E-value=1.1e-14 Score=112.41 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=101.0
Q ss_pred ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhc
Q 030122 45 TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEE 113 (182)
Q Consensus 45 ~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~ 113 (182)
+.+|.|+....+.+ ....+.++|++|+...+..|..++.+++++|||+++++ ..++.+....|..+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 45577788888998 99999999999999999999999999999999999753 36689999999999999
Q ss_pred cCCCCCeEEEEeeCCCCCCC--------------------CCHHHHH----HhhcccccCC---CceEEEEecccCCCCH
Q 030122 114 EELKGAVALIFANKQDLPGA--------------------LDDAAVS----EALELHKIKN---RQWAIFKTCAIKGEGL 166 (182)
Q Consensus 114 ~~~~~~p~i~v~nK~D~~~~--------------------~~~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~~i 166 (182)
....+.|++|++||.|+... ...+... ..+....... +.+.++.|+|.+...+
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 88899999999999997421 1112221 1111111112 7788999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
..+|+.+.+.|
T Consensus 379 ~~v~~~v~~~i 389 (389)
T PF00503_consen 379 RKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcC
Confidence 99999887654
No 270
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.60 E-value=1.6e-14 Score=103.17 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCc-----------eeeE-EEEe-----------------
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIG-----------FNVE-TVQY----------------- 58 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~-----------~~~~-~~~~----------------- 58 (182)
....+++.|+++|..|||||||++||...-... +.-... +++. ++.|
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~T 93 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVT 93 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhh
Confidence 445567789999999999999999998522111 100000 0000 0000
Q ss_pred --------------------CCEEEEEEECCCCCC-Chh------hhhhhC-CCCCEEEEEEeC---CCcchHHHHHHHH
Q 030122 59 --------------------NNIKFQVWDLGGQTS-IRP------YWRCYF-PNTEAVIYVVDS---SDTDRIQTAKEEF 107 (182)
Q Consensus 59 --------------------~~~~~~i~d~~g~~~-~~~------~~~~~~-~~~~~~i~v~d~---~~~~s~~~~~~~~ 107 (182)
......++|||||-. |.. ....+. ...-+++||+|. +++.+|-.-.-+-
T Consensus 94 sLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 224688999999843 221 122221 234678899986 3455665554444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-----c-----------------c-CCCceEEEEecccCCC
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-----K-----------------I-KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-----~-----------------~-~~~~~~~~~~Sa~~~~ 164 (182)
-.++.. .+.|+|++.||+|+.++.-..+++..+... . . .-+.+..+-+|+.+|.
T Consensus 174 cSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 555544 689999999999999865444443322100 0 0 1245678999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|.+++|..+-..+.+
T Consensus 251 G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999988877654
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.60 E-value=1.7e-14 Score=106.29 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=70.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-----------ccCCCceeeEEEEe--CC--EEEEEEECCCCCCCh-----
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-----------TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIR----- 75 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~--~~--~~~~i~d~~g~~~~~----- 75 (182)
-.++|+++|.+|+|||||+|+|++..+.. ..+|.++....... .+ +.+.+|||||-....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 46899999999999999999999887644 23344443333332 33 679999999943221
Q ss_pred ---------------------hhhhhhCC--CCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 76 ---------------------PYWRCYFP--NTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 76 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
......+. .+|+++|+++.+.. .+... ...++.+. .++|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 11112233 46788888876642 12222 33333332 258999999999996
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=5e-14 Score=108.38 Aligned_cols=78 Identities=22% Similarity=0.143 Sum_probs=54.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--c-cCCCceeeEEEE------------------------eCCEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--T-IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~------------------------~~~~~~~i~d~~g 70 (182)
++|+++|.||+|||||+++|.+..... + ..|+........ +....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876543 2 222222222111 1236789999999
Q ss_pred C----CCChhhhhhh---CCCCCEEEEEEeCC
Q 030122 71 Q----TSIRPYWRCY---FPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 95 (182)
. +....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3333344444 77999999999986
No 273
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.5e-14 Score=108.02 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=102.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~~ 83 (182)
.+.|+++|+||+|||||+|.|.+.+..-..|--| .-...+++.++++.+.||+|-..-.. ....-+.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~ 347 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIE 347 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHh
Confidence 4799999999999999999999988655333333 44556667999999999999654111 1233456
Q ss_pred CCCEEEEEEeCCCc--chHHHHHHHHHHHH-----hccCCCCCeEEEEeeCCCCCCCCCHHHH-HHhhcccccCCCceEE
Q 030122 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAIL-----EEEELKGAVALIFANKQDLPGALDDAAV-SEALELHKIKNRQWAI 155 (182)
Q Consensus 84 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~-----~~~~~~~~p~i~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (182)
.+|++++|+|+... ++-..+...+...- ........|++++.||+|+......-.. ...+... .--..++.
T Consensus 348 ~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i 426 (531)
T KOG1191|consen 348 RADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPI 426 (531)
T ss_pred hcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccce
Confidence 89999999999432 22222222222221 1112244799999999999865211000 0000000 01112334
Q ss_pred -EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 -FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 -~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++|+++++|+.++...+...+.
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHH
Confidence 45999999999999988887664
No 274
>PRK13768 GTPase; Provisional
Probab=99.57 E-value=3.8e-15 Score=108.57 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=73.3
Q ss_pred EEEEEECCCCCCC---hhhhhhhCCC-----CCEEEEEEeCCCcchHHHH-HH-HHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 62 KFQVWDLGGQTSI---RPYWRCYFPN-----TEAVIYVVDSSDTDRIQTA-KE-EFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 62 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~-~~-~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.+.+||+||+.+. +..+..+++. ++++++++|.....+..+. .. |+...... ..++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 6899999998653 4444333332 8999999999664433222 12 22222111 1579999999999998
Q ss_pred CCCCHHHHHHhhcc-----------------------cccC--CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 132 GALDDAAVSEALEL-----------------------HKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....+.....+.. .... ....+++.+|++++.|++++++++.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 65444333222221 0000 12357899999999999999999988764
No 275
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=103.53 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=108.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEeCCEEEEEEECCCCCC-------ChhhhhhhC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~ 82 (182)
...+++|+++|..|+||||++|.|+.+...+ ...+.. .......+..-.+.+||+||-.. ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4567899999999999999999999766655 222222 22223334567899999999755 566778888
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------CH----HH-HHHhh-ccccc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--------DD----AA-VSEAL-ELHKI 148 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------~~----~~-~~~~~-~~~~~ 148 (182)
...|.++.+++..++. +.--...++++.... .+.++++++|.+|..... .+ .+ +.+.. .....
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999887753 222233445554433 458999999999986541 11 11 10000 00111
Q ss_pred CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
-...-|++..|...+-|++++...++.++-
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 112346888888999999999999998765
No 276
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=1.3e-13 Score=109.44 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=70.0
Q ss_pred EEEEEEECCCCCCC-----hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+.++||||-..- .......+..+|+++||+|....-+..+. ...+.+.... ...|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~--K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG--QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC--CCCCEEEEEEcccCCCccc
Confidence 45789999996431 22344578899999999999875333321 1222232221 2369999999999864222
Q ss_pred --HHHHHHhhc--ccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 136 --DAAVSEALE--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.+.+..... +.........+|.+||+.|.|++++++.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 233332221 1111112345999999999999999998875
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=2.4e-13 Score=114.36 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=91.9
Q ss_pred CChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC------------------CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 28 FGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN------------------NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 28 ~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~------------------~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
++||||+..+.+..... ..-|..+....+... .-.+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999999877654 122222222222221 113899999999999888888888999
Q ss_pred EEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------------------HHHHHH----
Q 030122 87 AVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD------------------DAAVSE---- 141 (182)
Q Consensus 87 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------------------~~~~~~---- 141 (182)
++++|+|+++ +.+++.+. .+ .. .++|+++++||+|+...-. ..++..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----IL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999986 34444332 12 22 4689999999999863211 011110
Q ss_pred ---hhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 142 ---ALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 142 ---~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+....+ -...++++.+||++|+|+++++.++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0111111 1246789999999999999999887643
No 278
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.54 E-value=6.2e-15 Score=103.04 Aligned_cols=136 Identities=23% Similarity=0.347 Sum_probs=107.1
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC----------CCcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS----------SDTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~ 114 (182)
+.||.|+..+.++...+.+.+.|++|+...+..|.+.+++...+++.+.+ .+..++++...++.-++..+
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 67888888888888999999999999999999999999988877776543 45678899999999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCCCH-----------------HHHHHhh------cccccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGALDD-----------------AAVSEAL------ELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~~~~-----------------~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+..+.++|+++||.|+.++... .+....+ .+..-....+.-++++|.+.+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 9999999999999998764211 1111111 1122233456678999999999999999
Q ss_pred HHHHHHhcC
Q 030122 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~l~~~i~~~ 180 (182)
.+-+.+++.
T Consensus 343 aVkDtiLq~ 351 (359)
T KOG0085|consen 343 AVKDTILQL 351 (359)
T ss_pred HHHHHHHHh
Confidence 988877653
No 279
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=3.3e-14 Score=89.84 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=88.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh----hhhCCCCCEEEEEEeC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----RCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----~~~~~~~~~~i~v~d~ 94 (182)
||+++|..|+|||||++++.+.... +..|-.+.... =-.+||||..--...| .....++|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~d-------~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFND-------KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeeccC-------ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7999999999999999999876543 22222111100 0146999954333333 2234578999999999
Q ss_pred CCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 95 SDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
+++.+ |..- +.. ....|+|-+++|.|+.++.+.+-....+.... .-++|++|+.++.|++++++.|
T Consensus 75 nd~~s~f~p~------f~~---~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 75 NDPESRFPPG------FLD---IGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cCccccCCcc------ccc---ccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 88755 3211 111 14567999999999996444333333332222 2359999999999999999988
Q ss_pred HH
Q 030122 174 SN 175 (182)
Q Consensus 174 ~~ 175 (182)
..
T Consensus 142 ~~ 143 (148)
T COG4917 142 AS 143 (148)
T ss_pred Hh
Confidence 65
No 280
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.52 E-value=5.8e-13 Score=97.43 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=112.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe------CCEEEEEEECCCCCCChhhhhhhCCCC----CE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPNT----EA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~~~~~~~~~~~~----~~ 87 (182)
-.|+|+|+.|+|||||+.+|.+.+.. .+..+..+..+.+ +-.++.+|-..|+.-+..+....+... ..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccccc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 38999999999999999999887743 3334444444444 346899999999877777666655533 46
Q ss_pred EEEEEeCCCcch-HHHHHHHHHHHHhccCC--------------------------------------------------
Q 030122 88 VIYVVDSSDTDR-IQTAKEEFHAILEEEEL-------------------------------------------------- 116 (182)
Q Consensus 88 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~-------------------------------------------------- 116 (182)
+|++.|.+++.. ++.+..|..-+.+....
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 889999999844 55555554332211000
Q ss_pred ----------CCCeEEEEeeCCCCCC----CCC----HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 117 ----------KGAVALIFANKQDLPG----ALD----DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 117 ----------~~~p~i~v~nK~D~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++|+++|++|||... ..+ ..++.+...+.++-..+..++++|++...|++-++.+|++.+.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 2379999999999843 111 1234455555666677888999999999999999999998764
No 281
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.3e-13 Score=102.94 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=80.6
Q ss_pred EEEEEecCCCChHHHHHHhhc--CC-------------------Ccc----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GE-------------------VVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~-------------------~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
..++|-+|.+|||||..+|+- +. +.. +.-++.....++.|.+..+++.|||||++
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 689999999999999999773 11 111 11111133445666999999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
|...+-..+..+|.+++|+|+... +...-..+++.....++|++-++||.|...
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred cchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 998888888899999999998753 222223344444558999999999999864
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=2.1e-13 Score=112.58 Aligned_cols=113 Identities=17% Similarity=0.023 Sum_probs=79.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC---------------CCcc----ccCCCceeeEE----EEeCCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG---------------EVVS----TIPTIGFNVET----VQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~i~d~~g~ 71 (182)
..--+|+++|+.++|||||+++|+.. ++.+ +..|+...... +.+.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 33458999999999999999999752 2221 33344422222 3447899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+|.......++.+|++++|+|+...-..+.... +..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH----cCCCEEEEEEChhccc
Confidence 9998878888999999999999876432222111 222222 4678899999999864
No 283
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.49 E-value=7.3e-14 Score=99.26 Aligned_cols=132 Identities=25% Similarity=0.372 Sum_probs=102.2
Q ss_pred CCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCC
Q 030122 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.|+....+.+..++|+.+|++|+...+..|...+.+..++|||+..+. ..++++..++++.+-..+++.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 6667778888899999999999999999999999999999999998653 467889999999999999999
Q ss_pred CCeEEEEeeCCCCCCCC------------------------------CHHHHHHh------hccccc----CCCceEEEE
Q 030122 118 GAVALIFANKQDLPGAL------------------------------DDAAVSEA------LELHKI----KNRQWAIFK 157 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~------------------------------~~~~~~~~------~~~~~~----~~~~~~~~~ 157 (182)
.+.+|+++||.|+.... ...-+... +..... ...-+.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 99999999999985321 00001110 100001 123477889
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|+|.+.++|.++|+...+.+.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999987776654
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.48 E-value=9.9e-13 Score=92.55 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=63.0
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHH
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAA 138 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~ 138 (182)
....++++.|..-.....+. -++.+|.|+|+.+.++... .+... -...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~q-------i~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPG-------ITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhH-------hhhccEEEEEhhhccccccccHHH
Confidence 46667788874222222221 2578999999987655321 11011 11223899999999853 22222
Q ss_pred HHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+..... +...+++++|+++|+|++++|+++.+.++
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 22222211 34567999999999999999999987654
No 285
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.47 E-value=8.3e-14 Score=90.67 Aligned_cols=113 Identities=16% Similarity=0.061 Sum_probs=81.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-cc-CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
+||+++|..|+|||+|+.++....+.. +. +|.+ +......+.+.++.+++||+..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998777754 33 4443 3334455677889999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+..+++.+ |...+... ...++|.++++||.|+.... ++..... ..++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHHH--------HHHHHHhCCCcchhh
Confidence 99988765 66655443 34678999999999974321 1111111 127788999999885
No 286
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.47 E-value=2.5e-13 Score=97.94 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=58.8
Q ss_pred EEEEEECCCCCCChhhhhhhC--------CCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++|||||-++-..|...- ...-++++++|.....+ ...+..++..+... ...+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 799999999987654443322 34568889999764433 22222222222111 115899999999999986
Q ss_pred CCC---------HHH-----------HHHhhcccccCCCce-EEEEecccCCCCHHHHHHHHHHHH
Q 030122 133 ALD---------DAA-----------VSEALELHKIKNRQW-AIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 133 ~~~---------~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
... .+. +...+......-... .++.+|+++++|+.+++..+-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 000 111111111112233 799999999999999999887765
No 287
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=5.2e-13 Score=104.03 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=105.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Ccc---ccCCCceeeEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VVS---TIPTIGFNVETVQ 57 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~~---~~~t~~~~~~~~~ 57 (182)
.++..++.++++|+..+|||||+.+++..- ..+ +.-|+.+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 456678999999999999999999988611 011 2223333334444
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHH------HHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK------EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.....+++.|+||+..|-+.+......+|++++|+|++.. .|+.-. +-...+++. +.-.-+++++||+|+.
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLV 328 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH--cCcceEEEEeeccccc
Confidence 4778999999999999998888888999999999998742 222111 111112222 2345789999999997
Q ss_pred CC-C-CHHHHHHhh-----cccccCCCceEEEEecccCCCCHHHH
Q 030122 132 GA-L-DDAAVSEAL-----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 132 ~~-~-~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+= . ..+++...+ ....++...+.|+.+|..+|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 52 2 223443332 33345667788999999999987653
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.45 E-value=2.6e-12 Score=100.45 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=113.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe------CCEEEEEEECCCCCCChhhhhhhCCCC----C
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPNT----E 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~~~~~~~~~~~~----~ 86 (182)
.-.|+|+|..++|||||+.+|.+.. +..++.+..+..+++ ...++.+|...|...+..+....+... -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 3489999999999999999987543 255666766666655 335799999999877777776656532 4
Q ss_pred EEEEEEeCCCcch-HHHHHHHHHHHHhc------------------------c------C-----------------C--
Q 030122 87 AVIYVVDSSDTDR-IQTAKEEFHAILEE------------------------E------E-----------------L-- 116 (182)
Q Consensus 87 ~~i~v~d~~~~~s-~~~~~~~~~~~~~~------------------------~------~-----------------~-- 116 (182)
.+|+|+|.+.|.. ++.+..|+.-+... + . .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 7899999998755 33444433221000 0 0 0
Q ss_pred ------------CCCeEEEEeeCCCCCCC----C----CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 117 ------------KGAVALIFANKQDLPGA----L----DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 117 ------------~~~p~i~v~nK~D~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.++|++||++|+|.... . ..-++..++.+..+-.++..+++||++...+++.++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 13799999999997531 1 112345555556666788889999999999999999999998
Q ss_pred Hhc
Q 030122 177 LKS 179 (182)
Q Consensus 177 i~~ 179 (182)
+..
T Consensus 263 l~~ 265 (472)
T PF05783_consen 263 LYG 265 (472)
T ss_pred hcc
Confidence 764
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.44 E-value=3.1e-12 Score=92.89 Aligned_cols=119 Identities=8% Similarity=0.009 Sum_probs=76.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh--h-h-------h
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR--P-Y-------W 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~--~-~-------~ 78 (182)
.....++|+|+|.+|+|||||+|.+++..... ...|.........+.+..+.++||||-.... . . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34556899999999999999999999876543 2233334444445578899999999976442 1 0 1
Q ss_pred hhhCC--CCCEEEEEEeCCCc-chHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 79 RCYFP--NTEAVIYVVDSSDT-DRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ~~~~~--~~~~~i~v~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
..++. ..+++++|..++.. .+.. .+.+++.+.+... .-.++++|.||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 22333 56888888765532 1222 3344444433211 12479999999998643
No 290
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=1.2e-12 Score=93.21 Aligned_cols=161 Identities=11% Similarity=-0.023 Sum_probs=94.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hhh----hhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYW----RCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~----~~~ 81 (182)
++|+++|..||||||++|.+++....+ ...|.........+.+..+.++||||-..-. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999999887654 1234446666667799999999999942211 011 112
Q ss_pred CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc---c-cccCCCceEEE
Q 030122 82 FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---L-HKIKNRQWAIF 156 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 156 (182)
..+.|++++|+...... .-.....++..++.... -.-++|+.|..|.......++...... + ...+..+-.|+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 35689999999987332 13344455555554322 235788888888776555433322110 1 11121222355
Q ss_pred Eeccc------CCCCHHHHHHHHHHHHhcC
Q 030122 157 KTCAI------KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 157 ~~Sa~------~~~~i~~~~~~l~~~i~~~ 180 (182)
..+.+ ....+.++++.+-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55554 3457788888777766654
No 291
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.43 E-value=1.2e-11 Score=91.45 Aligned_cols=117 Identities=7% Similarity=0.089 Sum_probs=73.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh-------hhhhC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-------WRCYF 82 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~ 82 (182)
....++|+++|.+|+||||++|++++..... ..++.+ .........+..+.++||||....... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999876432 222222 222233347899999999997654221 11111
Q ss_pred --CCCCEEEEEEeCCC--cchH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 --PNTEAVIYVVDSSD--TDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 --~~~~~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
...|+++||..++. .... ..+.+.+..++... --.+.++++|+.|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999965542 2222 23333444433221 2247899999999763
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.42 E-value=1e-12 Score=98.62 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.++.+.++||+|.-.-... ....+|.+++|.+....+.++... ..+++ ..-++|+||+|+......
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHH
Confidence 3578999999996532222 355799999997644444444333 22222 233899999998764332
Q ss_pred --HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 --AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.++...+..... ..+..+++.+||+++.|++++++.+.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233333332111 123357999999999999999999987643
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.6e-12 Score=102.62 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=106.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEE----------------eCCEEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQ----------------YNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~i~d~~g~~ 72 (182)
..+..-|+++|+..+|||-|+..+.+..... ....+|..+.... ++---+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4455679999999999999999998755433 2223332221111 122357889999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-----C-CH-------
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-----L-DD------- 136 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-----~-~~------- 136 (182)
.|..+.....+-||.+|+|+|+.. +.+++.+. ++.. .+.|||+.+||+|.... . ..
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 999999999999999999999864 45555433 2222 68999999999997421 0 00
Q ss_pred ------------HHHHHhhcccc------cC----CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 ------------AAVSEALELHK------IK----NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 ------------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..+...+.... ++ ..-+.++.|||.+|+||.+++.+|+....
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 11111111111 11 13367899999999999999999987654
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.3e-12 Score=95.23 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC----------------------------------cc--ccCCCceeeEEEEeC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV----------------------------------VS--TIPTIGFNVETVQYN 59 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~----------------------------------~~--~~~t~~~~~~~~~~~ 59 (182)
..+|++..|...-|||||+.||+.... .+ +.-|+.+-+..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 458999999999999999999997221 01 222333444555558
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HH
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DA 137 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~ 137 (182)
+.+|++.|||||+.|...+....+.||++|+++|+... -++.... ...+... +.=..+++.+||+|+.+-.+ .+
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sL--LGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASL--LGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHH--hCCcEEEEEEeeecccccCHHHHH
Confidence 89999999999999988877788899999999998532 1222221 1112111 13346788889999987432 23
Q ss_pred HHHHhhccc--ccCCCceEEEEecccCCCCHH
Q 030122 138 AVSEALELH--KIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 138 ~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
++...+... .+......++.+||..|+|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 343333111 112344579999999999874
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=3.5e-12 Score=91.55 Aligned_cols=139 Identities=11% Similarity=-0.016 Sum_probs=82.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
...|+++|++|+|||||++.+.+..... .....|. .......+..+.++|+||.. ..+ ....+.+|.+++++|.+
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~ 114 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDAS 114 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecC
Confidence 4579999999999999999998653222 2222221 11122367788999999854 222 23457899999999987
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCCCCCCCC-HHHHHHhhccccc--CCCceEEEEecccCCC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (182)
....... ...+..+ .. .+.|. ++|+||+|+..... .+++...+..... .....+++.+||+++-
T Consensus 115 ~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 115 FGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 6443222 1222222 22 35675 45999999874322 2222222211111 1124579999998863
No 296
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=2.6e-12 Score=98.05 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=107.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCC--Ccc-----------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE--VVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|++|-+..=|||||+.+|+.+. |.+ +.-|+-.....+.|++++++|+|||||.+|-..-.
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 69999999999999999999754 211 11111122234677899999999999999988888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---ccc--CCCceE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---HKI--KNRQWA 154 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~~~ 154 (182)
..++-.|++++++|+.+.- +....-.++..+. .+.+-|+|+||+|.+.++..+.+.+.+.+ -.. .+..+|
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 8889999999999987531 1111111122222 57788999999999987665433333321 112 346788
Q ss_pred EEEecccCCC----------CHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~----------~i~~~~~~l~~~i~ 178 (182)
+++.|+..|. +..-+|+.|++.+.
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 9999998763 67778888776553
No 297
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=9.5e-12 Score=95.12 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=58.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-----------------CEEEEEEECCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQ 71 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~ 71 (182)
......++|+++|.||+|||||+|+|.+..... ...|+......+.+. ...+.++|+||-
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 345566799999999999999999998766433 333445555555442 235899999995
Q ss_pred CCCh----h---hhhhhCCCCCEEEEEEeCC
Q 030122 72 TSIR----P---YWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 72 ~~~~----~---~~~~~~~~~~~~i~v~d~~ 95 (182)
..-. . .....++++|++++|+|..
T Consensus 96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4211 1 2233456899999999973
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.38 E-value=2e-11 Score=91.30 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHH
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~ 138 (182)
.++.+.++||+|..... ......+|.++++.+.. +-+++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999843211 22455678888775433 223443333333 4577899999999986433221
Q ss_pred HHHhh--cc----cccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 139 VSEAL--EL----HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 139 ~~~~~--~~----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
....+ .+ ........+++.+||+++.|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 11 11112234689999999999999999998764
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=2.9e-12 Score=107.33 Aligned_cols=114 Identities=18% Similarity=0.076 Sum_probs=80.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCc---------------c----ccCCCceeeEEEEe---------------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVV---------------S----TIPTIGFNVETVQY--------------- 58 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~---------------~----~~~t~~~~~~~~~~--------------- 58 (182)
.+..--+|+++|+.++|||||+++|+..... + +.-|+......+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3444458999999999999999999853311 0 11222211222333
Q ss_pred -CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.+..+.++||||+.+|.......++.+|++|+|+|+...-..+... .++.+.. .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH----CCCCEEEEEECCccc
Confidence 2678899999999999888888889999999999988764433322 2233322 578999999999987
No 300
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=4.7e-12 Score=91.92 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-HHHHhhcccccC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALELHKIK 149 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~ 149 (182)
+++..+.+.+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 678888888999999999999999887 89999999876532 679999999999997533221 222222 2
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHH
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
..+++++++||++|.|++++|+.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 34567999999999999999988753
No 301
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=4.8e-12 Score=105.91 Aligned_cols=112 Identities=19% Similarity=0.095 Sum_probs=78.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--cc-----------------ccCCCceeeEEEEeC----------CEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--VS-----------------TIPTIGFNVETVQYN----------NIKFQV 65 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~i 65 (182)
...-+|+++|+.++|||||+++|+...- .. +.-|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3334899999999999999999986221 00 111222112233332 577999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+||||+.+|.......++.+|++|+|+|+.+.-.-+.. ..++.+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 99999999887778888999999999998875333322 23344433 468999999999997
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.35 E-value=1.1e-11 Score=88.05 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=82.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--c-----ccC--CC--------ceeeEEEE--------------------e
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--S-----TIP--TI--------GFNVETVQ--------------------Y 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--~-----~~~--t~--------~~~~~~~~--------------------~ 58 (182)
....|+|+|+.|||||||++++...... . ..+ .. +.....+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3457999999999999999998853110 0 000 00 00000000 0
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--H
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--D 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~ 136 (182)
.+..+.++++.|.-.... .+....+..+.|+|..+.+.... . ... ....|.++++||+|+.+... .
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhH
Confidence 134667777777211111 11123455567777765432111 0 011 13467899999999975322 2
Q ss_pred HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 137 AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.++...+.. .....+++.+||++|.|++++|+++.+..
T Consensus 169 ~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 169 EKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 233322221 12346799999999999999999998753
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.4e-12 Score=91.18 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----CccccCCCceeeEEEEe-CCEEEEEEECCCCCCC-----hhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ 86 (182)
+-||+++|..|||||++=.-++.+- .....+|+.+....+.+ ....+.+||.+|++.+ .......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 4589999999999999766555332 22267777787778877 6699999999999853 234566788999
Q ss_pred EEEEEEeCCCcch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc--cccc-CCCceEEEEecc
Q 030122 87 AVIYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE--LHKI-KNRQWAIFKTCA 160 (182)
Q Consensus 87 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~Sa 160 (182)
++++|||++..+- +....+-++.+++.. +...+.+...|+|+......+.+-+... +... ....+.++.+|-
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999986543 333334445555543 7888999999999986543333221111 0111 123456777776
Q ss_pred cC
Q 030122 161 IK 162 (182)
Q Consensus 161 ~~ 162 (182)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 65
No 304
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.34 E-value=9e-11 Score=91.81 Aligned_cols=151 Identities=14% Similarity=0.067 Sum_probs=105.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
...-+.+.++|+.++|||.+++.+.++.+.+ ...+.. +.+..+.. ....+.+.|.+-. ....+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 3455689999999999999999999988776 333333 33333333 5567777787765 333332222 679999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-----CHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.++||++++.+|+.+...+...... ...|+++|++|+|+.+.. .++++...++++. ....|.++.
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~ 569 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTL 569 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCC
Confidence 9999999999999888765554333 789999999999997642 3466777776663 344454432
Q ss_pred CCHHHHHHHHHHHH
Q 030122 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~i~~~~~~l~~~i 177 (182)
-. .++|..|+...
T Consensus 570 ~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 570 SS-NELFIKLATMA 582 (625)
T ss_pred CC-chHHHHHHHhh
Confidence 22 78888887654
No 305
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.4e-11 Score=93.52 Aligned_cols=151 Identities=17% Similarity=0.045 Sum_probs=109.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.|+..|.---|||||++.+.+..... +.-|+.+.++.....+..+.++|+||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778888999999999999865432 555666666666667779999999999998777777778899999999
Q ss_pred eCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 93 DSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
+.++. .+.+.+. ++.. ..-...++|+||+|..+....++..+...... .....++|.+|+++|+||+++
T Consensus 82 ~~deGl~~qtgEhL~-----iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 82 AADEGLMAQTGEHLL-----ILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred eCccCcchhhHHHHH-----HHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHH
Confidence 98643 3333222 1121 13345599999999987654444333332111 134556899999999999999
Q ss_pred HHHHHHHH
Q 030122 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~l~~~i 177 (182)
.+.|....
T Consensus 154 k~~l~~L~ 161 (447)
T COG3276 154 KNELIDLL 161 (447)
T ss_pred HHHHHHhh
Confidence 99998877
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.31 E-value=2.8e-11 Score=91.72 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=76.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-----eeeEEEEe-CCEEEEEEECCCCC--CChh---hhhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-----FNVETVQY-NNIKFQVWDLGGQT--SIRP---YWRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-----~~~~~~~~-~~~~~~i~d~~g~~--~~~~---~~~~~~~ 83 (182)
.+++|+|+|.+|+|||||+|.|.+-.-.+ .....| .....+.. +.-.+.+||.||.. .+.. +-..-+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 46899999999999999999998633222 111111 22222333 33468999999953 3322 1222345
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC---------CCCCH----HHH----HHhhccc
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDD----AAV----SEALELH 146 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~---------~~~~~----~~~----~~~~~~~ 146 (182)
..|.+|++.+ ++|.....++....+. .++|+.+|-+|+|.. ..-.. +++ .+.+...
T Consensus 114 ~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 114 RYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp G-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 6788888773 4565555554444443 589999999999951 11111 111 1222222
Q ss_pred ccCCCceEEEEecccCCC--CHHHHHHHHHHHHh
Q 030122 147 KIKNRQWAIFKTCAIKGE--GLFEGMDWLSNTLK 178 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~--~i~~~~~~l~~~i~ 178 (182)
. -..-++|-+|+.+-. .+..+.+.+.+.+.
T Consensus 187 g--v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 187 G--VSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp T---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred C--CCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1 133468888887643 56666666665544
No 307
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.28 E-value=2.7e-11 Score=100.40 Aligned_cols=113 Identities=17% Similarity=0.034 Sum_probs=76.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc--c-----------------ccCCCceeeEEEEe----CCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV--S-----------------TIPTIGFNVETVQY----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~--~-----------------~~~t~~~~~~~~~~----~~~~~~i~d~~g~ 71 (182)
..--+|+++|+.++|||||+.+|+...-. . +.-|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 33336999999999999999999853211 0 11222222222333 4678999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+|.......++.+|++|+|+|+...-.-+.. ..+..... .+.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH----cCCCeEEEEECchhhc
Confidence 99988778888999999999998765332222 22233222 3567899999999863
No 308
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=8e-11 Score=87.11 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----Ccc------ccCCCceeeEEEEe---------CCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VVS------TIPTIGFNVETVQY---------NNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~~------~~~t~~~~~~~~~~---------~~~~~~i~d~~g~~~~~~~ 77 (182)
.+++.++|...||||||.+++..-. |.. +.-|.......+.+ +...+.++|.||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4899999999999999999998532 221 22233344444444 3356799999997665433
Q ss_pred hhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH----HHHHhh--ccccc
Q 030122 78 WRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA----AVSEAL--ELHKI 148 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~----~~~~~~--~~~~~ 148 (182)
......-.|..++|+|+.... +.+.+. +.++ .-...++|+||+|..++..+. ...... .++..
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh--hhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 333344468999999987542 222221 1111 234567888888887654432 111111 12222
Q ss_pred C-CCceEEEEecccCC----CCHHHHHHHHHHHHh
Q 030122 149 K-NRQWAIFKTCAIKG----EGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~-~~~~~~~~~Sa~~~----~~i~~~~~~l~~~i~ 178 (182)
. ..+.|++++|+..| +++.++.+.+.+++-
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 2 34589999999999 788887777776654
No 309
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-11 Score=94.95 Aligned_cols=161 Identities=11% Similarity=0.132 Sum_probs=115.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc-eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...++|+.++|..++|||+|+++++.+.+.+...+.+ ...+.+.. ....+.+.|.+|... ..|...+|++||
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 3456899999999999999999999999988444444 33333333 667777888887333 345667999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||.+.+..+|+.+..+...+-.......+|+++++++.-.............-.........+.+|++++.+|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 99999999999999888887766666788999998865443322221111111111123445679999999999999999
Q ss_pred HHHHHHHhc
Q 030122 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~l~~~i~~ 179 (182)
..+...+..
T Consensus 182 ~~~~~k~i~ 190 (749)
T KOG0705|consen 182 QEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHH
Confidence 998876653
No 310
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.9e-10 Score=80.30 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=101.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-h--hhhhhCCCCCEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-P--YWRCYFPNTEAV 88 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-~--~~~~~~~~~~~~ 88 (182)
.+.+|+++|...|||||+..-..+..-+. ...|..+....+.-..+.+.+||.|||-.+- + .....++++-++
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 45689999999999999988766543322 3344444444444456889999999986542 2 346678899999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhcc--CCCCCeEEEEeeCCCCCCCCC-H---HHHH----HhhcccccCCCceEEEEe
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALD-D---AAVS----EALELHKIKNRQWAIFKT 158 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~D~~~~~~-~---~~~~----~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+|+.+. +.+....+....... -.+++-+=+++.|.|...+.- . .++. +.+.-....+-.+.++-|
T Consensus 106 ifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 106 IFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 999997652 333333333333221 137888999999999865321 1 1221 122222223445566667
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|-.+ ..|-+.|..+++.+..
T Consensus 184 SIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred eecc-hHHHHHHHHHHHHHhh
Confidence 6654 6788889888877653
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=2.9e-10 Score=77.99 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=43.8
Q ss_pred EEEEEEECCCCC----CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 61 IKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 61 ~~~~i~d~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
..+.++|+||-. .....+..++..+|++|+|.+.+...+-.+...+.... .. ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 358899999963 23456788889999999999998865544444443333 22 334489999984
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.18 E-value=1.7e-10 Score=79.11 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=81.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccC-----------------C-CceeeEEEEe--------------------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIP-----------------T-IGFNVETVQY-------------------- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~-----------------t-~~~~~~~~~~-------------------- 58 (182)
-++|.|.|++|||||+|+.+++..-..++.. . .+.....+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 3789999999999999999987522111000 0 1111111111
Q ss_pred --CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHh-ccCCCCCeEEEEeeCCCCCCCCC
Q 030122 59 --NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 --~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
....+.|++..|+-... -.+.-..+.-|+|+|.+..+... ++ .+.... .=++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~GNL~~~---~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCP---FSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCcceecc---cCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhC
Confidence 11355566666621110 01111234788888887654211 01 111112 4489999999987544
Q ss_pred H-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 136 D-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
. -+++..-... -+...+++++|+++|+|++++++|+....
T Consensus 160 ~dlevm~~da~~--~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKE--VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHH--hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 1222222111 23556799999999999999999998754
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.17 E-value=1.1e-10 Score=83.75 Aligned_cols=149 Identities=19% Similarity=0.147 Sum_probs=87.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC-----C------CccccC------------------CCceeeEEEEe--------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG-----E------VVSTIP------------------TIGFNVETVQY-------- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~-----~------~~~~~~------------------t~~~~~~~~~~-------- 58 (182)
.-+.|.+-|+||+|||||++.|... . ..+.+| -.+.+...+-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4569999999999999999998751 0 000111 11133333222
Q ss_pred ------------CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 59 ------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 59 ------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
.++.+++++|.|--.-. -....-+|.+++|.-+.-.+.++.++.=+-+ ++=++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEe
Confidence 34688888888732211 1224568999999988766665544432222 23389999
Q ss_pred CCCCCCCCC-HHHHHHhhcccc--cCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 127 KQDLPGALD-DAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 127 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
|.|...... ..++...+.+.. ...+..+++.|||.++.|++++++.+.+.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 999654332 234444443332 23456799999999999999999988763
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.16 E-value=3e-10 Score=83.50 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=40.4
Q ss_pred CCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 117 KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
...+-++++||+|+.+.. ..+.+...+.. .+...+++.+|+++|+|++++++||...
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456779999999997532 22333222211 2345679999999999999999999874
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.1e-10 Score=91.33 Aligned_cols=112 Identities=18% Similarity=0.069 Sum_probs=82.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC--Ccc-------------------ccCCCceeeEEEEeCC-EEEEEEECCCCCCCh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE--VVS-------------------TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~ 75 (182)
-+|.++|+-.+||||+..+++... ... +.-|+.....++.|.+ ..++++|||||-+|.
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 479999999999999999988522 111 1222223333556674 999999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
......++-+|+++.|+|+...-..+.-.-| +... ..++|.++++||+|.....
T Consensus 91 ~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~----~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 91 IEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQAD----KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHh----hcCCCeEEEEECccccccC
Confidence 8888888999999999999875443333333 3332 2589999999999987653
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=2e-09 Score=82.10 Aligned_cols=152 Identities=12% Similarity=0.019 Sum_probs=87.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC----CCc-------------c--cc---CCCceee---EEEEe-----CCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-----NNIKF 63 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~~-----~~~~~ 63 (182)
....+-|+|+|+.++|||||+++|.++ ... . .. .|.+... ..+.+ -..++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 445689999999999999999999997 322 1 12 3333333 34444 23789
Q ss_pred EEEECCCCCC--------Chh---------------------hhhhhCC-CCCEEEEEE-eCC----CcchHHHH-HHHH
Q 030122 64 QVWDLGGQTS--------IRP---------------------YWRCYFP-NTEAVIYVV-DSS----DTDRIQTA-KEEF 107 (182)
Q Consensus 64 ~i~d~~g~~~--------~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~ 107 (182)
.++|++|-.. ... -+...+. +++..|+|. |.+ .++.+... ..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 9999998421 110 0233444 789999888 653 11233333 3444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccC--CCCHHHHHHHHH
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK--GEGLFEGMDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~ 174 (182)
..+.+ .++|+++++||+|-.... ..++...+. ...+++++.+|+.. .+.|..+++.++
T Consensus 174 ~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 174 EELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 44433 589999999999943221 222222221 12234566666553 345555555443
No 317
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.13 E-value=3.7e-10 Score=82.25 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=94.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC-----------ccccCCCc------------------eeeEEEEe------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV-----------VSTIPTIG------------------FNVETVQY------ 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~-----------~~~~~t~~------------------~~~~~~~~------ 58 (182)
..+...|.+-|.||+|||||+..|...-. .+.+|-.| .....+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 34456999999999999999999875110 00111111 11111111
Q ss_pred --------------CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEE
Q 030122 59 --------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 59 --------------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v 124 (182)
.++.++|++|.|--.-. -....-+|.+++|.-+.-.+.++.++.= ++ .+-=++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~G---im------EiaDi~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAG---IM------EIADIIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhh---hh------hhhheee
Confidence 34678888888733222 1223458999998876666666655532 22 2334899
Q ss_pred eeCCCCCCCCC-HHHHHHhhcccc--c--CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 125 ANKQDLPGALD-DAAVSEALELHK--I--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+||.|...... ..++...+.+.. . +.+..+++.|||.+|+|++++++.+.+..
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 99999665432 233444443332 2 34677899999999999999999987654
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=1.8e-09 Score=86.69 Aligned_cols=118 Identities=13% Similarity=0.035 Sum_probs=73.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCCh-------hh---h
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PY---W 78 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~---~ 78 (182)
+-...++|+++|.+|+||||++|.+++..... ...|...........+..+.++||||-.... .. .
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 33455799999999999999999999876433 2233333333334477899999999965421 11 1
Q ss_pred hhhCC--CCCEEEEEEeCCCcchH-H--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 79 RCYFP--NTEAVIYVVDSSDTDRI-Q--TAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 79 ~~~~~--~~~~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..++. .+|++++|..+...... + .+.+.+..++-.. -=.-+|||.|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 11333 57999999887543322 2 2233333333221 1236788999999875
No 319
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.09 E-value=1.6e-09 Score=80.12 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=65.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccc-----------cCCCceeeEEEEe----CCEEEEEEECCCCCCCh---hh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVST-----------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR---PY 77 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~---~~ 77 (182)
-.++|+|+|..|+|||||+|.|++...... .++..+....... ..+.+.++||||--... ..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 368999999999999999999998664331 1222233333333 34688899999932110 00
Q ss_pred h-----------hhh-------------CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 78 W-----------RCY-------------FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------~~~-------------~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
| ..+ =...|+++|+++++.. .+..+ ...++.+. ..+++|-|+.|.|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 0 000 0246899999987643 12211 23334442 4688999999999876
Q ss_pred CC
Q 030122 133 AL 134 (182)
Q Consensus 133 ~~ 134 (182)
..
T Consensus 157 ~~ 158 (281)
T PF00735_consen 157 PE 158 (281)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4e-09 Score=79.22 Aligned_cols=79 Identities=18% Similarity=0.068 Sum_probs=57.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe------------------CCEEEEEEECCCCCC--
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY------------------NNIKFQVWDLGGQTS-- 73 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------~~~~~~i~d~~g~~~-- 73 (182)
.+++.++|.||+|||||.|.+....... +..|++.+...+.+ ....+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999877432 55566654443333 235788999998532
Q ss_pred -----ChhhhhhhCCCCCEEEEEEeCC
Q 030122 74 -----IRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 74 -----~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.-.....-++++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233444567899999999975
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.4e-09 Score=78.92 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=95.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC----------------Ccc-ccCCCceeeEEEEe--CCEEEEEEECCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----------------VVS-TIPTIGFNVETVQY--NNIKFQVWDLGGQT 72 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~----------------~~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~ 72 (182)
.....+++|..+|...-|||||...+..-- .++ ....+.++...+.| .+.++-..|.||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 345668999999999999999998877510 111 22233345555555 77899999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCCCCH-----HHHHHhh
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGALDD-----AAVSEAL 143 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~~~~-----~~~~~~~ 143 (182)
+|-........+.|++|+|+.+++. .+-+-+ ++.. .-+. -+++++||+|+.++.+. .++.+.+
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi------Llar--qvGvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI------LLAR--QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh------hhhh--hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 9876666566778999999998763 332211 1111 1355 56677799999975443 2344555
Q ss_pred cccccCCCceEEEEecccC
Q 030122 144 ELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~ 162 (182)
....+.....|++.-|+..
T Consensus 159 s~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHcCCCCCCcceeechhhh
Confidence 5555555677888888774
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.06 E-value=3.4e-09 Score=76.42 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=69.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCc-------eeeE---------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIG-------FNVE--------------------------- 54 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~-------~~~~--------------------------- 54 (182)
....|+++|+.|+||||+++.+.+..+.+ +.|+.- ....
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 44589999999999999999999864211 111100 0000
Q ss_pred -----------EEEe---CCEEEEEEECCCCCCC-------------hhhhhhhCCC-CCEEEEEEeCCCcchHHHHHHH
Q 030122 55 -----------TVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPN-TEAVIYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 55 -----------~~~~---~~~~~~i~d~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~ 106 (182)
.+++ ....+.++|+||-... ..+...|+++ .+.+++|+|....-+-.+....
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0111 2257999999997421 1245567774 4588889987542221122222
Q ss_pred HHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 107 FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.+ ...+.|+++|+||.|..+.
T Consensus 185 a~~l----d~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEV----DPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHH----HHcCCcEEEEEECCCCCCc
Confidence 2222 1257899999999999753
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.05 E-value=4.5e-10 Score=82.48 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=53.0
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC----h
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI----R 75 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~----~ 75 (182)
|+++|.||||||||+|++.+..... ...|+......+.+.+ ..+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877533 4445555555555532 24899999995432 1
Q ss_pred hh---hhhhCCCCCEEEEEEeC
Q 030122 76 PY---WRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 76 ~~---~~~~~~~~~~~i~v~d~ 94 (182)
.+ ....++++|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 12 22335689999999986
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=1.2e-09 Score=76.47 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=63.7
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhh---cccccC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~---~~~~~~ 149 (182)
++.++..+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999875421 11111111 25689999999999964322 22221111 001111
Q ss_pred CCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.....++.+||++|.|++++++++.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11124899999999999999999988653
No 325
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.01 E-value=2.5e-09 Score=81.17 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=55.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC---
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~--- 74 (182)
++|+++|.||||||||+|++.+..... ...|+......+.+.. ..+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 3445455554444422 35899999995432
Q ss_pred -hh---hhhhhCCCCCEEEEEEeCC
Q 030122 75 -RP---YWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 -~~---~~~~~~~~~~~~i~v~d~~ 95 (182)
.. .....++++|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 2233456899999999973
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-09 Score=85.55 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=81.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccc-cCCC---------------c--eeeEEEEe-------CCEEEEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVST-IPTI---------------G--FNVETVQY-------NNIKFQVW 66 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~-~~t~---------------~--~~~~~~~~-------~~~~~~i~ 66 (182)
..+....+|+++|+-+.|||+|+..|..+.-.+. ..+. | +....... +.+-+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3456667899999999999999999887553321 1100 0 11111111 45678999
Q ss_pred ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|||||-.|.......++.+|++++|+|+.+.-.+..-. +++..-..+.|+.+|+||.|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHHH
Confidence 99999999988888889999999999998766554322 2222233679999999999964
No 327
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.3e-09 Score=79.96 Aligned_cols=158 Identities=13% Similarity=-0.007 Sum_probs=98.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCC---cc---ccCCCceeeE--------------EEEe------------CCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEV---VS---TIPTIGFNVE--------------TVQY------------NNIKF 63 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~--------------~~~~------------~~~~~ 63 (182)
..++|.++|+..=|||||...|.+--. ++ +.-|+...+. .... --.++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 458999999999999999999987221 11 1111111000 0000 01468
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHH
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~ 139 (182)
.|.|.|||+..-+...+...--|++++|++.+.+.--......+-.+ +.. .-..++++-||+|+...+.. +++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 89999998876655444444469999999998754333333333222 111 33578999999999864322 112
Q ss_pred HHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.. ... --.+.+++.+||..+.||+-+++.+.+.+.
T Consensus 166 k~Fv-kGt-~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 166 KEFV-KGT-VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHh-ccc-ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 1111 111 124568999999999999999999988764
No 328
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.98 E-value=3.9e-08 Score=70.18 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=62.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-------hhhhhCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------YWRCYFP 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~ 83 (182)
....-||++||-|.+|||||+..+....-.. ...|...-...+.+++..+++.|.||--.-.+ ......+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 4456799999999999999999988544322 33444455566777999999999998533221 2334556
Q ss_pred CCCEEEEEEeCCCcch
Q 030122 84 NTEAVIYVVDSSDTDR 99 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s 99 (182)
.+|.+++|.|++..+.
T Consensus 139 taDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 139 TADLILMVLDATKSED 154 (364)
T ss_pred cccEEEEEecCCcchh
Confidence 7999999999986443
No 329
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=79.04 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=95.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhh--------hhhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPY--------WRCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~--------~~~~~~ 83 (182)
...-|.++|-.|||||||+++|......+ .+.|.....+.... .+-.+.+.||-|--..-++ +.....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 34579999999999999999999654433 56666665665555 5567788899984322111 112244
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE----EEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA----LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~----i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|.++.|.|++.|+--+.....+.-+.+. ..++.|. +=|-||+|..+..... ... ..+.+|
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~-----------E~n--~~v~is 322 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEE-----------EKN--LDVGIS 322 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCcc-----------ccC--Cccccc
Confidence 789999999999997654444433333222 2233343 4455666655322110 011 167889
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|+|.+++.+.+-..+.
T Consensus 323 altgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccCccHHHHHHHHHHHhh
Confidence 9999999999888776654
No 330
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=3.9e-09 Score=71.56 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=61.9
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceE
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.++.+..+++|++++|+|++++...... .+ ...... .+.|+++|+||+|+.+......+. .+ ......+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l-~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KL-ERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HH-HHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCCc
Confidence 45667778889999999999876432221 11 111221 468999999999986421111111 11 1112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHHh
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++.+||+++.|++++++.+.+.+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999987664
No 331
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.93 E-value=7.7e-09 Score=77.69 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=94.4
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-------------------ccCCCceeeE-----------------EE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------------------TIPTIGFNVE-----------------TV 56 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------------------~~~t~~~~~~-----------------~~ 56 (182)
....++||+++|...+|||||+.-|.++.... +..+.|-++. .+
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 45568899999999999999998887643211 2222221111 12
Q ss_pred Ee------CCEEEEEEECCCCCCChhhhhh--hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 57 QY------NNIKFQVWDLGGQTSIRPYWRC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 57 ~~------~~~~~~i~d~~g~~~~~~~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+| ....++++|.+|+++|-..... .-+-.|-.++++..+.. +....++-+.......+|+++|.+|+
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLgLALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLGLALALHVPVFVVVTKI 283 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhhhhhhhcCcEEEEEEee
Confidence 22 2246789999999998653322 22345777777765531 11111112222222578999999999
Q ss_pred CCCCCCCHHHHHHhh-------------------------cccccCCCceEEEEecccCCCCHHHHH
Q 030122 129 DLPGALDDAAVSEAL-------------------------ELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 129 D~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|..+++..++-++.+ ..++..++-+++|++|..+|+|+.-+.
T Consensus 284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 998876555544332 122334677999999999999987643
No 332
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.7e-09 Score=80.44 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCC----------------------------------CccccCCCceeeEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----------------------------------VVSTIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~----------------------------------~~~~~~t~~~~~~~~ 56 (182)
..++..+++++|+|...+||||+..++.... ..+...|++.....+
T Consensus 73 ~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 73 GEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred cCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 4567889999999999999999998877510 111345666666777
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.....++.+.|+||+..|-+......+++|..++|+++...+ .|+.--+.-...+......-...++++||+|.+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 778889999999999999887777788999999999875321 23322111111111111245678999999998764
Q ss_pred CCH----HHHHHhh----c-ccccCCCceEEEEecccCCCCHHHHH
Q 030122 134 LDD----AAVSEAL----E-LHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~----~~~~~~~----~-~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
... ++..+.+ . +..-......++.+|..+|.++++..
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 322 1221111 1 11112356679999999999988754
No 333
>PRK12289 GTPase RsgA; Reviewed
Probab=98.92 E-value=6.6e-09 Score=79.02 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=64.9
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
..+....+.++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+........+.+.+ ...++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCC
Confidence 334455678999999999998775 4445566655442 2679999999999997532222222222 23345
Q ss_pred EEEEecccCCCCHHHHHHHHHH
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
.++.+||+++.|++++++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 6999999999999999988764
No 334
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.91 E-value=8.6e-09 Score=77.51 Aligned_cols=157 Identities=15% Similarity=0.023 Sum_probs=98.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-c----------------cCCCceeeEEEEe-----------------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T----------------IPTIGFNVETVQY----------------- 58 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~----------------~~t~~~~~~~~~~----------------- 58 (182)
.+..++.+.+.|..+.|||||.-.|..+...+ . .-+..+....+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567899999999999999999988755332 1 1111111111111
Q ss_pred ------CCEEEEEEECCCCCCChhhhh--hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 59 ------NNIKFQVWDLGGQTSIRPYWR--CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 59 ------~~~~~~i~d~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
.+..+.+.|+.|++.+-.... .+-.+.|-.++++.+++.-+-- -++-+-.....+.|++++.+|+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-----tkEHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-----TKEHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-----hhHhhhhhhhhcCCEEEEEEeccc
Confidence 224678999999999865332 2335789999999887743311 111111112268999999999999
Q ss_pred CCCCCH----HHHHHhhcc--------------------cccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 131 PGALDD----AAVSEALEL--------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 131 ~~~~~~----~~~~~~~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
.++... +++...+.+ ......-+|+|.+|+.+|+|++-+.+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 876443 233322211 01112368999999999999987665544
No 335
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=7.6e-09 Score=77.60 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=96.0
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc------------------------ccCCCceeeE--EEEe-----
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS------------------------TIPTIGFNVE--TVQY----- 58 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~~--~~~~----- 58 (182)
+..+...++|++++|...+|||||+.-|..+.... ...++|++.. .+.|
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 34455668899999999999999998887644221 0112222111 1112
Q ss_pred -------CCEEEEEEECCCCCCChhhhhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 59 -------NNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 59 -------~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
...-++++|.+|+.+|.......+. ..|.+.+|+++...-.- ...+.+..+.. .++|++++.+|+|
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~D 314 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMD 314 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeec
Confidence 1236789999999998765544443 35778888876543210 11111122211 5899999999999
Q ss_pred CCCCCCH----HHHHHhhccc---------------------ccCCCceEEEEecccCCCCHHHHHH
Q 030122 130 LPGALDD----AAVSEALELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 130 ~~~~~~~----~~~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+.+.... .++...+... .+...-+|+|.+|+.+|+|++-+-.
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 9875333 2333332222 2234557999999999999886543
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.87 E-value=7e-09 Score=69.19 Aligned_cols=52 Identities=19% Similarity=0.038 Sum_probs=37.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+++++|.+|+|||||+|++.+..........+ .....+.... .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999877654222222 3333333333 6799999994
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.85 E-value=1.1e-08 Score=69.51 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=38.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g 70 (182)
...+|+++|.+|+|||||+|++.+.......++.|.......+ ..-.+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 4578999999999999999999987655544444432222222 223478999998
No 338
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=4.6e-08 Score=72.47 Aligned_cols=86 Identities=15% Similarity=0.041 Sum_probs=62.6
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe-----------------CCEEEEEEECC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY-----------------NNIKFQVWDLG 69 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-----------------~~~~~~i~d~~ 69 (182)
.......++++.++|.|++|||||+|.+.+..... +..|++.+...+.+ -...+++.|++
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIA 92 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIA 92 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeec
Confidence 34556688999999999999999999999877655 55677666655544 12478999999
Q ss_pred CCCCC-------hhhhhhhCCCCCEEEEEEeCC
Q 030122 70 GQTSI-------RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 70 g~~~~-------~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|.-+- -.....-++.+|+++.|+++.
T Consensus 93 GLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 93 GLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 85432 222334456899999998854
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1e-07 Score=71.61 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=78.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEe-------------C------C----------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQY-------------N------N---------- 60 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-------------~------~---------- 60 (182)
-..+.-|+++|.-..|||||++.|+.+++.. ..||.......+.. + +
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 3456689999999999999999999998865 55665533332221 0 0
Q ss_pred ------------EEEEEEECCCCCC-----------ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCC
Q 030122 61 ------------IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 61 ------------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (182)
-.+.++||||--. |.....=+.+.+|.++++||+..-+--++....+..+.. .
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~ 210 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H 210 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C
Confidence 1689999999532 222333356789999999998664433344444444432 3
Q ss_pred CCeEEEEeeCCCCCCCC
Q 030122 118 GAVALIFANKQDLPGAL 134 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~ 134 (182)
.-.+-+|+||.|..+..
T Consensus 211 EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQ 227 (532)
T ss_pred cceeEEEeccccccCHH
Confidence 44677889999988654
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=1.3e-08 Score=70.01 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=38.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee--EEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g 70 (182)
..++++++|.||+|||||+|++.+.......+.-|... ..+.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 34799999999999999999999876644333333222 22222 34688999998
No 341
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=73.57 Aligned_cols=155 Identities=12% Similarity=0.013 Sum_probs=90.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCce--eeEEEEeCCEEEEEEECCCC----------CCChhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGF--NVETVQYNNIKFQVWDLGGQ----------TSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~--~~~~~~~~~~~~~i~d~~g~----------~~~~~~ 77 (182)
-|.....++++.|..|+|||+|++.+...+... ..++.|. ....+. -+..+.+.|.||- ..+...
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~-v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH-VGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee-ccceEEEEecCCcccccCCccCcchHhHh
Confidence 345677899999999999999999999876544 2223331 112222 3568899999992 223334
Q ss_pred hhhhCCCCCE---EEEEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------HHHHHH-hhc
Q 030122 78 WRCYFPNTEA---VIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD------DAAVSE-ALE 144 (182)
Q Consensus 78 ~~~~~~~~~~---~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------~~~~~~-~~~ 144 (182)
...|+-+-+- +.+.+|.+.+ -.. ...+|+. ..++|..+|.||||...... ...+.. ...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~g-------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLG-------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQG 281 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHh-------hcCCCeEEeeehhhhhhhccccccCccccceeehhh
Confidence 5555554333 3333444322 111 1222322 26899999999999865322 011111 000
Q ss_pred cc-ccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 145 LH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 145 ~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+. ....-..+|+.+|+.++.|+++++-.+..
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhh
Confidence 00 11123456889999999999998766554
No 342
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.79 E-value=2.6e-08 Score=74.10 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred hhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 79 RCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. +...... .....+++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence 33577899999999999887 78888887765543 578999999999997541 1111111 11123467999
Q ss_pred ecccCCCCHHHHHHHHH
Q 030122 158 TCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~ 174 (182)
+|++++.|+++++.++.
T Consensus 144 vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 144 VSAKTGEGLDELREYLK 160 (287)
T ss_pred EECCCCccHHHHHhhhc
Confidence 99999999999988765
No 343
>PRK12288 GTPase RsgA; Reviewed
Probab=98.79 E-value=3.7e-08 Score=74.96 Aligned_cols=88 Identities=24% Similarity=0.211 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+....+.+..... .+...+++++.+||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 456899999999988888988888876442 25789999999999975432222211111 112334679999999
Q ss_pred CCCCHHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLSN 175 (182)
Q Consensus 162 ~~~~i~~~~~~l~~ 175 (182)
++.|++++++++..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998865
No 344
>PRK00098 GTPase RsgA; Reviewed
Probab=98.78 E-value=2e-08 Score=75.07 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEec
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
..++|.+++|+|+.++...... ..|+..+.. .++|+++|+||+|+.+... ..++...+ ...+++++.+|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~vS 148 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLELS 148 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEEe
Confidence 5789999999999888765444 455544432 5789999999999963211 11121111 22345799999
Q ss_pred ccCCCCHHHHHHHHH
Q 030122 160 AIKGEGLFEGMDWLS 174 (182)
Q Consensus 160 a~~~~~i~~~~~~l~ 174 (182)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=3e-08 Score=67.25 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=40.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g 70 (182)
...+++++|.+|+||||+++++.+.......++.+.......+ .+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 3468999999999999999999976655566666644322111 334789999999
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=1.2e-08 Score=78.25 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (182)
+++|+.+...+...++++++|+|+.+... .|...+.... .+.|+++|+||+|+.+.. ..+.+..... ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 45677788888889999999999876531 1223333222 367999999999996532 2222221110 0011
Q ss_pred CCc---eEEEEecccCCCCHHHHHHHHHHH
Q 030122 150 NRQ---WAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 150 ~~~---~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
..+ ..++.+||++|.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 111 148999999999999999998654
No 347
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.69 E-value=2.8e-07 Score=69.16 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=73.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-----------ccCCCceeeEEEEe----CCEEEEEEECCCCCCC---h
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-----------TIPTIGFNVETVQY----NNIKFQVWDLGGQTSI---R 75 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~---~ 75 (182)
....++|.++|+.|+|||||+|.|++..... ..+++.+......+ -.+.++++||||--.+ .
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 4567899999999999999999999863211 23555555555544 3467889999994211 1
Q ss_pred -----------hhhhhhC--------------CCCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 76 -----------PYWRCYF--------------PNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 76 -----------~~~~~~~--------------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
.++..|+ ...|+++|.+.++. ..+..+. ..++.+- ..+-+|-|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS-----KRVNLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh-----cccCeeeeeeccc
Confidence 1111222 14689999998663 2233222 2333332 4567788888999
Q ss_pred CCCCCCH
Q 030122 130 LPGALDD 136 (182)
Q Consensus 130 ~~~~~~~ 136 (182)
.....+.
T Consensus 174 ~lT~~El 180 (373)
T COG5019 174 TLTDDEL 180 (373)
T ss_pred cCCHHHH
Confidence 9865443
No 348
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.2e-07 Score=72.96 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=82.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceee-----------------------E---------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNV-----------------------E--------------- 54 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~-----------------------~--------------- 54 (182)
..+.||++.|..++||||++|.++..+.-+ ..+++.... .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456799999999999999999999855433 233222000 0
Q ss_pred ------EEEe-CC------EEEEEEECCCCCC---ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCC
Q 030122 55 ------TVQY-NN------IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 55 ------~~~~-~~------~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+-+ ++ -.+.++|.||-.. ...-...++.++|++|+|.++.+.-+.. ....++...+ .+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~K 261 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EK 261 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cC
Confidence 0111 00 1466788888543 3334566788999999999866543322 2223333322 34
Q ss_pred CeEEEEeeCCCCCCCCCH--HHHHHh---hcccccCCCceEEEEecccC
Q 030122 119 AVALIFANKQDLPGALDD--AAVSEA---LELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 119 ~p~i~v~nK~D~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.-+.++-||+|.....+. +++..+ +.....+.-.-.+|++|++.
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 556666688898765432 344333 11112222334588888653
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.66 E-value=4.9e-07 Score=64.94 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=55.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC--CCcc----ccCCCceeeEEEEe---CCEEEEEEECCCCCCCh------hhhhhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR------PYWRCY 81 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~------~~~~~~ 81 (182)
-.-|+++|++++|||+|+|++.+. .+.- ...|.|+......+ .+..+.++||+|..... ......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 346999999999999999999988 5543 34455544444333 35789999999964321 112223
Q ss_pred CCC--CCEEEEEEeCCCcch
Q 030122 82 FPN--TEAVIYVVDSSDTDR 99 (182)
Q Consensus 82 ~~~--~~~~i~v~d~~~~~s 99 (182)
+.. ++.+||..+......
T Consensus 87 l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 87 LATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHhCEEEEeccCcccHH
Confidence 333 788888887665433
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.66 E-value=2.5e-07 Score=62.78 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=57.9
Q ss_pred hCCCCCEEEEEEeCCCcch--HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEe
Q 030122 81 YFPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+.++|.+++|+|+.++.. ...+..++.. . ..+.|+++|+||+|+.+.....++...+.. ......+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEe
Confidence 3678999999999988632 2333333222 1 246899999999999753222233333321 122336889
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||+.+.|++++++++.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987653
No 351
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.7e-07 Score=71.36 Aligned_cols=78 Identities=14% Similarity=0.008 Sum_probs=56.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC-cc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCC--
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV-VS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI-- 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~-- 74 (182)
+++.++|.|++|||||++.+.+... .. ...|+..+...+.+.+ ..+.+.|+||--.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 33 3334555555555522 46889999996432
Q ss_pred -----hhhhhhhCCCCCEEEEEEeCC
Q 030122 75 -----RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 -----~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.......++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 223444577899999999974
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=8.5e-08 Score=66.05 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=38.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
..++++++|.+|+|||||++++.+..+....+..+ .....+.+. ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 44799999999999999999999877644222222 222333332 46789999994
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=9.5e-08 Score=71.16 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=39.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeE--EEEeCCEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVE--TVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~d~~g~~ 72 (182)
..++|+++|.||+|||||+|+|.+.......+..|.... .+.. +..+.++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 457999999999999999999998765443333332222 2222 3468899999963
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.65 E-value=8.5e-08 Score=71.05 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=38.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCce--eeEEEEeCCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGF--NVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~ 71 (182)
..++++++|.||+|||||+|+|.+.......+..|. ....+... -.+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 458999999999999999999998765442222222 22223332 36789999996
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.7e-08 Score=75.75 Aligned_cols=126 Identities=17% Similarity=0.059 Sum_probs=89.5
Q ss_pred Cccee-EEEEEecCCCChHHHHHHhhcCC-----------------Ccc--ccC--CCceeeEEEEeCCEEEEEEECCCC
Q 030122 14 PCTHV-LGFSFFIDNFGNLCDTDRLQMGE-----------------VVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~-~i~viG~~~~GKssl~~~l~~~~-----------------~~~--~~~--t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+..++ +|.++..-.+||||...|++... |.. +.. |+.--...++|++.++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 33344 59999999999999999987521 111 112 222223456679999999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhc
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALE 144 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~ 144 (182)
-+|+-.....++--|+++.|||.+....-+.+..|.. ....++|-+.++||+|...+.- .+.+.+.++
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 9999888888888899999999987655555555522 2347899999999999876432 344555544
No 356
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=7.6e-07 Score=67.24 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=73.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEEEEe----CCEEEEEEECCCCCC------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVETVQY----NNIKFQVWDLGGQTS------ 73 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~------ 73 (182)
..-.+.+.++|+.|.|||||+|.|+...... ...|..+....... -.+.++++||||--+
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 4445899999999999999999999764332 22244455555555 246788999998421
Q ss_pred -Chh-------hhhhhC-----------C--CCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 74 -IRP-------YWRCYF-----------P--NTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 74 -~~~-------~~~~~~-----------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+++ ....|+ . ..|+++|.+.++.. .+..+. ..++.+. ..+.+|-|+.|.|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccC
Confidence 111 112222 1 56899999986642 222222 2223332 467888888999998
Q ss_pred CCCCH
Q 030122 132 GALDD 136 (182)
Q Consensus 132 ~~~~~ 136 (182)
...+.
T Consensus 172 T~~El 176 (366)
T KOG2655|consen 172 TKDEL 176 (366)
T ss_pred CHHHH
Confidence 65433
No 357
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=2.3e-07 Score=62.84 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCcchHHHHHHHHH-HHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFH-AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|.+++|+|+.++.+... .++. ..+.. .++|+++|+||+|+.+.....++...+. ......++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999988755432 1222 22222 5789999999999964321122221221 1113458999999999
Q ss_pred CHHHHHHHHHHH
Q 030122 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~i~~~~~~l~~~ 176 (182)
|++++++.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.59 E-value=5.2e-07 Score=78.69 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=67.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccc-----cCC--CceeeEEEEe-CCEEEEEEECCCCC--------CChhhhhhhC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVST-----IPT--IGFNVETVQY-NNIKFQVWDLGGQT--------SIRPYWRCYF 82 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~i~d~~g~~--------~~~~~~~~~~ 82 (182)
=.++||++|+||||++++- +..+.-. ..+ .+-.. .+++ -.-.-.++||+|.. .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 3799999999999999987 4443221 111 11111 1222 22355689999943 2234465554
Q ss_pred C---------CCCEEEEEEeCCCc-----ch----HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 P---------NTEAVIYVVDSSDT-----DR----IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 ~---------~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
. ..|++|+++|+.+- +. ...+...+.++.+. .....|+.+++||+|+..
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3 47999999997542 11 12334444555433 235899999999999874
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=2.3e-06 Score=57.27 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=75.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECC-CCC-----------C---C----
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLG-GQT-----------S---I---- 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~-g~~-----------~---~---- 74 (182)
..+||++-|+||+||||++.++.+.--......-|+....+.- .-+-|.+.|+. |.. + |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3579999999999999999998742221111111232333322 22344555544 211 0 1
Q ss_pred ---h----hhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc
Q 030122 75 ---R----PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147 (182)
Q Consensus 75 ---~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~ 147 (182)
. +-....+..+|++| +|=--+ ++.....|.+.+......+.|++.++.+.+.. .+.+.+.
T Consensus 84 ~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik--- 150 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIK--- 150 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhh---
Confidence 1 11122334456554 453222 33333334444444334678988888876542 2222221
Q ss_pred cCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+...+.+| .+.+|-+.+++.+.+.+...
T Consensus 151 -~~~~v~v~----lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 151 -KLGGVYVF----LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred -hcCCEEEE----EccchhhHHHHHHHHHhccC
Confidence 11122233 66677779999998887643
No 360
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.8e-07 Score=68.47 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=96.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcC----------CC------cc-ccCCCceeeEEEEe--CCEEEEEEECCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMG----------EV------VS-TIPTIGFNVETVQY--NNIKFQVWDLGGQT 72 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~----------~~------~~-~~~t~~~~~~~~~~--~~~~~~i~d~~g~~ 72 (182)
..+..+++|.-||...=|||||.-.+..- ++ ++ ....+.++...+.| ...++--.|.||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 34567889999999999999998877641 11 11 23334466666666 56778888999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-----HHHHhhcccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-----AVSEALELHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~-----~~~~~~~~~~ 147 (182)
+|-........+-|++|+|+..++.. +....+.+....+. .=..+++++||.|+.++.+.- ++.+.+....
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 98776666677889999999988742 12222222222222 234678888999998654322 2344444445
Q ss_pred cCCCceEEEEeccc
Q 030122 148 IKNRQWAIFKTCAI 161 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~ 161 (182)
+....+|++.-||.
T Consensus 205 f~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 205 FDGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCCeeecchh
Confidence 55677888877765
No 361
>PRK14974 cell division protein FtsY; Provisional
Probab=98.54 E-value=1.9e-06 Score=65.28 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=53.3
Q ss_pred CEEEEEEECCCCCCChh-hhh---hh--CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWR---CY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
++.+.++||+|...... +.. .. ..+.|..++|.|+......-.....|... --+--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCCC
Confidence 46799999999764322 111 11 22578899999986543322222222221 1235788999998653
Q ss_pred CCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 134 LDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
... -.+....+ .|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVIG--------KPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHHC--------cCEEEEe--CCCChhhcc
Confidence 321 22232222 3366665 788888765
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=1.7e-07 Score=65.62 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=34.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc--------cccCCCceeeE--EEEeCCEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV--------STIPTIGFNVE--TVQYNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~i~d~~g 70 (182)
.+++++|.+|+|||||+|.|.+.... ...+..|.... .+.... .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 58999999999999999999975421 11111122222 222222 579999999
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=2.6e-07 Score=62.58 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=36.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
...+++++|.+|+|||||+|.+.+..... ...|.... .+.. ...+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKL-DNKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEe-cCCEEEEECCC
Confidence 45789999999999999999999865432 22222222 2222 24688999998
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.51 E-value=1.7e-07 Score=64.60 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=57.6
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....+.++|.+++|+|++++..-... .. ... ..+.|+++|+||+|+.+......+.+.+. .....++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~--~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKI--LGNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhH--hcCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 445567789999999999876432111 11 111 13579999999999964321112211111 1123589
Q ss_pred EecccCCCCHHHHHHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.+|++++.|++++.+.+...+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999888764
No 365
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-06 Score=62.22 Aligned_cols=80 Identities=15% Similarity=-0.035 Sum_probs=56.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc-eeeEEEEeCCEEEEEEECCCCCCC------h-hhhhhhCCCCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG-FNVETVQYNNIKFQVWDLGGQTSI------R-PYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~~------~-~~~~~~~~~~~~ 87 (182)
-||.++|-|.+||||++..+.+..... +..|.- .....+.+++-++++.|.||--+- + .+.....+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 489999999999999999998654322 333332 334455678889999999984221 1 123345567999
Q ss_pred EEEEEeCCCc
Q 030122 88 VIYVVDSSDT 97 (182)
Q Consensus 88 ~i~v~d~~~~ 97 (182)
+++|.|+..|
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999997653
No 366
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.1e-06 Score=68.07 Aligned_cols=140 Identities=12% Similarity=-0.006 Sum_probs=80.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
.++-++|+||||+|||||++.|...-.......+.-.+..+..+..++++.+.|. ....+. ....-+|.+++.+|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEEeccc
Confidence 3568889999999999999988753322211111111222333778899999883 333333 3345689999999976
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccC--CCceEEEEecccC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIK--NRQWAIFKTCAIK 162 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~Sa~~ 162 (182)
-.-.++. ... ..++... .=..++-|+++.|+..... ...+...+...++. ..+..+|+.|-..
T Consensus 145 fGfEMET-mEF-Lnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FGFEMET-MEF-LNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cCceehH-HHH-HHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 4322221 122 2233332 1234677889999986543 23343333322222 2456688888653
No 367
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.48 E-value=3.2e-07 Score=69.28 Aligned_cols=56 Identities=16% Similarity=-0.033 Sum_probs=40.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (182)
...++.|+|-||+||||++|+|.+.......+.-|+......+ -.-.+.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 3478999999999999999999988875533333433333222 2334889999994
No 368
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.8e-06 Score=68.70 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=76.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC-----------------cc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV-----------------VS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~-----------------~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|.++-.-.+||||+.++++.... .+ +.-|+.--...+.|...+++++|||||-+|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 488899999999999999875221 00 111111222345568899999999999998766
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
-...++--|++|+|+|....---+....| ++... .++|.+.++||+|...+
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh----cCCCeEEEEehhhhcCC
Confidence 66677778999999997654333333333 33322 58999999999998653
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.40 E-value=8.8e-07 Score=59.03 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=48.3
Q ss_pred hhCCCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
..+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+.+.....++.+.+ +.....++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEE
Confidence 3467899999999998876533 344443322 1478999999999986432222222222 122246899
Q ss_pred ecccCCCC
Q 030122 158 TCAIKGEG 165 (182)
Q Consensus 158 ~Sa~~~~~ 165 (182)
+||.++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99987653
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=5.9e-06 Score=62.35 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=74.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC----Cc------cc-c-----------CCCceeeEEE-----------------E
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE----VV------ST-I-----------PTIGFNVETV-----------------Q 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~----~~------~~-~-----------~t~~~~~~~~-----------------~ 57 (182)
.-.|+++|++|+||||++..+...- .. +. . ...++..... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999887521 00 00 0 0011111110 0
Q ss_pred eCCEEEEEEECCCCCCChhh-------hhhh-----CCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEE
Q 030122 58 YNNIKFQVWDLGGQTSIRPY-------WRCY-----FPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~-------~~~~-----~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v 124 (182)
..++.+.++||+|....... .... -...+..++|+|++... .+..+. ..... --+.-+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~----~f~~~----~~~~giI 265 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK----AFHEA----VGLTGII 265 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH----HHHhh----CCCCEEE
Confidence 14578999999997543221 1111 12467889999987532 233222 11111 1355789
Q ss_pred eeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 125 ANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 125 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+||.|....-. .-.+..... .|+.+++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCc
Confidence 99999654321 123333332 3477777 778887654
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.37 E-value=1.8e-06 Score=64.00 Aligned_cols=91 Identities=20% Similarity=0.116 Sum_probs=59.8
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.....++.+|++++|+|+..+.+-.. ..+..++ .+.|+++|+||+|+.+......+.+.+.. ...+++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~vi 81 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKAL 81 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeEE
Confidence 34556788999999999987644221 1112222 35799999999999643212222222211 123589
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
.+|++++.|++++.+.+.+.+.+
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999888876643
No 372
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.30 E-value=2e-05 Score=62.39 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=54.2
Q ss_pred EEEEEEECCCCC-------------CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 61 IKFQVWDLGGQT-------------SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 61 ~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
-+..++|.||-- ..-.+..+|.++.+++|+|+-- .|.+.-..-..++.......+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 367889999831 2234677889999999999942 222222333355666666678899999999
Q ss_pred CCCCCCC--CHHHHHHhhc
Q 030122 128 QDLPGAL--DDAAVSEALE 144 (182)
Q Consensus 128 ~D~~~~~--~~~~~~~~~~ 144 (182)
.|+.+.+ +++.+.+.+.
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 9998753 3455555543
No 373
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=1.6e-05 Score=56.67 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=67.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEE--EEeC--CEEEEEEECCCCCCC---hhhh-
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSI---RPYW- 78 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~i~d~~g~~~~---~~~~- 78 (182)
.++|.|+|.+|.|||||+|.++...... ...|+++...+ +.-+ ..+++++||||--++ ...|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5799999999999999999998654322 22333322221 2223 356788999994221 1111
Q ss_pred ----------hhhC------------C--CCCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 79 ----------RCYF------------P--NTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ----------~~~~------------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
..|+ . ..++++|.+..+. .++.-+. ..++.+- .-.-++-|+.|.|...-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeecccccH
Confidence 1122 1 3578888887663 2222221 2222222 22456777889998765
Q ss_pred CCHHHHHHh
Q 030122 134 LDDAAVSEA 142 (182)
Q Consensus 134 ~~~~~~~~~ 142 (182)
.+..++.+.
T Consensus 200 eEr~~Fkqr 208 (336)
T KOG1547|consen 200 EERSAFKQR 208 (336)
T ss_pred HHHHHHHHH
Confidence 444444433
No 374
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.26 E-value=3.9e-06 Score=62.57 Aligned_cols=89 Identities=20% Similarity=0.164 Sum_probs=58.9
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
....+..+|++++|+|+..+.+.+. .++.... .+.|+++|+||+|+.+......+.+.+. ..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEEE
Confidence 4456788999999999987644221 1222222 2689999999999864311222222221 11245899
Q ss_pred ecccCCCCHHHHHHHHHHHHh
Q 030122 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+|++++.|++++.+.+...+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999988877654
No 375
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=3.8e-06 Score=68.36 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=74.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc---------------cccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV---------------STIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~---------------~~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~ 79 (182)
+|+++.+..=|||||...|...... +-..+-|+.- ..+.. +++.++++|+|||-+|.....
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 6999999999999999999853311 1112222222 22333 789999999999999999888
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
....-+|+++..+|+...-.-+.. .++...+..+...++|+||+|.
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence 888889999999998764222211 1222223356778999999993
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.26 E-value=1.4e-05 Score=59.06 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCEEEEEEECCCCCCChhhhh-------hhC-----CCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEe
Q 030122 59 NNIKFQVWDLGGQTSIRPYWR-------CYF-----PNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~-------~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~ 125 (182)
.++.+.++||+|......... ... ..+|..++|+|++... .+..+ ....+.. -+.-+++
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~Il 224 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIIL 224 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEE
Confidence 457899999999765433211 111 2378999999986432 23322 2222211 2468899
Q ss_pred eCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 126 NKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 126 nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
||.|....... -.+..... .|+.+++ +|++++++-
T Consensus 225 TKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 99998654321 23333332 3366666 777776654
No 377
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.25 E-value=7.4e-07 Score=60.26 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-.++++|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999864
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.24 E-value=3.8e-06 Score=64.67 Aligned_cols=87 Identities=21% Similarity=0.194 Sum_probs=52.7
Q ss_pred CCCCC-EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCc---eEEE
Q 030122 82 FPNTE-AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQ---WAIF 156 (182)
Q Consensus 82 ~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~---~~~~ 156 (182)
+...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.+.. ..+.+..... ...+..+ ..++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEE
Confidence 34445 899999987743 11222332221 367999999999996532 1222211110 0111111 2489
Q ss_pred EecccCCCCHHHHHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~ 176 (182)
.+||+++.|++++++.+.+.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.24 E-value=2e-06 Score=65.63 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=34.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc------eeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG------FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~------~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
.++|+|.+|+|||||+|+|.+..... .....+ .....+.... ...++||||-..+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 48999999999999999999765432 111111 1111122211 12489999976654
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.24 E-value=5.6e-06 Score=56.27 Aligned_cols=22 Identities=5% Similarity=-0.159 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998864
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=1.3e-05 Score=61.49 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|+++...-....+..++..+.. .++|.++|+||+|+.+. .++..+.+... ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5688999999999643333333333333322 57788999999999754 22221111111 335679999999
Q ss_pred CCCCHHHHHHHHH
Q 030122 162 KGEGLFEGMDWLS 174 (182)
Q Consensus 162 ~~~~i~~~~~~l~ 174 (182)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.20 E-value=3.4e-06 Score=64.40 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++|+|++|+|||||+|.|.+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999997543
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.16 E-value=1.8e-05 Score=61.76 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=62.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-cc-----------CCCceeeEEEEe----------------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TI-----------PTIGFNVETVQY---------------- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~-----------~t~~~~~~~~~~---------------- 58 (182)
...|+++|++||||||++.+|.. .... + +. ...++.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999863 1100 0 10 011111111100
Q ss_pred -CCEEEEEEECCCCCCChh-hhh---h--hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRP-YWR---C--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++.+.++||+|...... +.. . ...+++.+++|+|+.-...-......|.. .--+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~-------~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD-------SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh-------ccCCcEEEEECccCC
Confidence 257899999999654432 111 1 12256889999998654332222233222 123567888999975
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 384
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.13 E-value=6.8e-06 Score=59.88 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=34.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---c--------cCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---T--------IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~--------~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
-.++++|.+|+|||||+|+|.+..... . ..|..... +...+ -.++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence 378999999999999999999754322 1 12222222 22222 378999996554
No 385
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=2.8e-05 Score=52.21 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=35.0
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
++.+.++||+|.... ...++..+|-+++|...+-.+. ....+... ...-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~----y~~~k~~~-----~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDD----IQAIKAGI-----MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhH----HHHhhhhH-----hhhcCEEEEeCCC
Confidence 568999999885422 2346778999999887652222 22111111 2233378899987
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=2.5e-05 Score=67.41 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=65.7
Q ss_pred EEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe-CCEEEEEEECCCCC--------CChhhhhhhC---
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQT--------SIRPYWRCYF--- 82 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~d~~g~~--------~~~~~~~~~~--- 82 (182)
-+|||++|+||||++..- +.+|.- .....+......++ -+-.-.++||.|.. ..+..|..++
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 589999999999988643 222221 11111122122222 34466788999843 2234555442
Q ss_pred ------CCCCEEEEEEeCCCc------ch---HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 83 ------PNTEAVIYVVDSSDT------DR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 ------~~~~~~i~v~d~~~~------~s---~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+.-|++|+.+|+.+- +. ...+...+.++.+. .....|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 356999999997542 11 22334444555333 346789999999999875
No 387
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=2.4e-05 Score=60.06 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC---C--cc----ccCC---------------CceeeEEEE-----------eCCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE---V--VS----TIPT---------------IGFNVETVQ-----------YNNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~---~--~~----~~~t---------------~~~~~~~~~-----------~~~~ 61 (182)
.-.++|+|++|+||||++.+|...- . .. ...+ .++....+. +.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3478999999999999999987531 1 00 0000 111111111 1456
Q ss_pred EEEEEECCCCCCChhhh----hh--hCCCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCC-CCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYW----RC--YFPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELK-GAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~----~~--~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~-~~p~i~v~nK~D~~~ 132 (182)
.+.++||+|........ .. ......-.++|++.+.. +.+......|.......... .-+--+++||.|...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 89999999976443211 11 11234556889988654 44565555555443221100 013467779999765
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.04 E-value=9.6e-06 Score=62.37 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=35.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc-----c--ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV-----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~-----~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
.++.++|.+|+|||||+|++.+.... . ..|........+.. .-.+.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCC
Confidence 48999999999999999999975321 1 12211122222332 12357999999643
No 389
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=0.00013 Score=50.36 Aligned_cols=22 Identities=5% Similarity=-0.319 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 390
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.03 E-value=2.8e-05 Score=42.77 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 84 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
-.++++|++|++.. .++++-...++++.... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 36899999999875 45777788888886653 5899999999998
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.02 E-value=6.4e-05 Score=51.76 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=39.3
Q ss_pred CEEEEEEECCCCCCChhhh----hhh--CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+..+.+.|++|...+.... ..+ ....+.+++|+|.....+ ...+...+.+. .+ ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---CC-CCEEEEECCcCCCC
Confidence 4578899999975332211 111 134899999999864432 22333333322 12 35777799998653
No 392
>PRK13796 GTPase YqeH; Provisional
Probab=98.01 E-value=1.2e-05 Score=61.87 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=33.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEEEEeCCEEEEEEECCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 72 (182)
.++.++|.+|+|||||+|+|....... ..|........+...+ ...++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 379999999999999999998543111 1222222222333321 24799999963
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=9e-06 Score=57.19 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=59.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCC----Ccc------------------ccCCCceeeEEEE-----------------eC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE----VVS------------------TIPTIGFNVETVQ-----------------YN 59 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~----~~~------------------~~~t~~~~~~~~~-----------------~~ 59 (182)
.|+++|++||||||.+-+|...- ... +....++...... -+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 58999999999999988876411 000 0111111111110 03
Q ss_pred CEEEEEEECCCCCCChhh----hhhhC--CCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+..+.++||+|....... ...+. ...+-+++|.+++.... +..+...+..+ + +--++.+|.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence 467999999997665431 11111 15678999999876543 33222222111 2 2356799999865
Q ss_pred C
Q 030122 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.97 E-value=8.1e-06 Score=60.32 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..+++|.+|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 68999999999999999999743
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=9.9e-06 Score=60.41 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=35.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCC--Cc----eeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPT--IG----FNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t--~~----~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
-.++++|++|+|||||+|.|.+..... ...+ .| .....+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 479999999999999999999765332 1100 11 1112222221 23689999976653
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.94 E-value=8.3e-05 Score=45.65 Aligned_cols=97 Identities=12% Similarity=-0.016 Sum_probs=55.9
Q ss_pred EEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhh-hhhhCCCCCEEEEEEeCCCcc
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+++.|.+|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 678899999999999888743211 122222222 7889999986543321 14455678999999976643
Q ss_pred hHHHHHHHHHHHHhccCCCCCeEEEEee
Q 030122 99 RIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~i~v~n 126 (182)
++...................+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222224555555544
No 397
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.92 E-value=1.9e-05 Score=55.25 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+-++|+||.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46689999999999999999875
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=3e-05 Score=58.15 Aligned_cols=25 Identities=8% Similarity=-0.177 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
..++++|++|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999987543
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=3.1e-05 Score=59.68 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=59.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC----c------c------------ccCCCceeeEEEEe--------------CCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV----V------S------------TIPTIGFNVETVQY--------------NNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~----~------~------------~~~t~~~~~~~~~~--------------~~~ 61 (182)
-.|+++|++||||||++..|...-. . + +....++......- .+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 4799999999999999999864110 0 0 00011111111000 136
Q ss_pred EEEEEECCCCCCChhh----hhhhC--CCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.++||+|....... ...++ ...+.+++|+|++-. ..+..+...|.. --.--+++||.|....
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~--------~~idglI~TKLDET~k 392 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--------IHIDGIVFTKFDETAS 392 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC--------CCCCEEEEEcccCCCC
Confidence 8999999997543221 12222 245778899987533 223333322221 1234678899998753
No 400
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=2.9e-05 Score=56.59 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=68.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-----ccCCCceeeEEEEe----CCEEEEEEECCCC-------CCChh----
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-----TIPTIGFNVETVQY----NNIKFQVWDLGGQ-------TSIRP---- 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~----~~~~~~i~d~~g~-------~~~~~---- 76 (182)
.++|+.+|..|.|||||+..|++..+.. ..|++.....+... -..++.+.||.|- +.|.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 5799999999999999999999988755 33444444444333 2367889999983 12222
Q ss_pred ---hhhhh-------------CC--CCCEEEEEEeCCCcchHHHHHHH-HHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 77 ---YWRCY-------------FP--NTEAVIYVVDSSDTDRIQTAKEE-FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ---~~~~~-------------~~--~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
....| ++ ..++++|.+.++. .+++.+.-. ++.+ ..+.-+|-++-|.|....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~L-----dskVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKL-----DSKVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHH-----hhhhhhHHHHHHhhhhhH
Confidence 11111 22 4577888887663 344444322 1222 245667777789987754
No 401
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.5e-05 Score=51.46 Aligned_cols=21 Identities=10% Similarity=-0.205 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.85 E-value=0.00041 Score=52.48 Aligned_cols=92 Identities=22% Similarity=0.143 Sum_probs=51.2
Q ss_pred EEEEEEECCCCCCChhhhhhhCC--------CCCEEEEEEeCCCcchHH-HHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQ-TAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
....++++.|-..=.+....+.. .-|++|.|+|+.+-.... .....+.+-+.. .+ ++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCC
Confidence 45667777775544333222222 347899999987644322 233443333333 23 8999999999
Q ss_pred CCCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 132 GALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++...+.+...+.. -++..+++.++..
T Consensus 159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEELEALEARLRK---LNPRARIIETSYG 185 (323)
T ss_pred CHHHHHHHHHHHHH---hCCCCeEEEcccc
Confidence 76533333333221 2445567777763
No 403
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.84 E-value=0.00011 Score=46.53 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=58.0
Q ss_pred EEEEec-CCCChHHHHHHhhcCCCccccCCCceeeEEEEe---CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 20 GFSFFI-DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 i~viG~-~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
|+++|. .|+||||+...|...-.... +....-++. ....+.++|+|+.... .....+..+|.++++.+.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~ 75 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD 75 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC
Confidence 344444 79999998877653221110 111111111 1227899999986543 3344667899999999765
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeC
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 127 (182)
..++..+..+...+.+........+.+|+|+
T Consensus 76 -~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 76 -LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4556666666555544322114466777774
No 404
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=60.56 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=42.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~ 71 (182)
.+.+++.|+|-|++||||++|+|.........++.|+....-.+ .+-.+.+.|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 46789999999999999999999998887755555533322222 3457788999984
No 405
>PRK08118 topology modulation protein; Reviewed
Probab=97.82 E-value=1.4e-05 Score=54.81 Aligned_cols=22 Identities=9% Similarity=-0.201 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+|+|++|||||||.++|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999854
No 406
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=6.5e-05 Score=57.19 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=56.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC----C----------C-----cc--------ccCCCc--eeeEE----------E
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG----E----------V-----VS--------TIPTIG--FNVET----------V 56 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~----~----------~-----~~--------~~~t~~--~~~~~----------~ 56 (182)
+.--|.++|..|+||||.+.+|... . | .+ ..|-.+ ..... +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 3345899999999999999887751 0 1 00 111111 00000 1
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHH
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 110 (182)
.-+++.++|.||.|..... .+... -.-+.|-+|+|.|++-....+.....|++.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 1156899999999954422 22221 122579999999998766655555555554
No 407
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.81 E-value=2.6e-05 Score=61.11 Aligned_cols=54 Identities=20% Similarity=0.046 Sum_probs=39.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeCCEEEEEEECCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 71 (182)
.+.|.++|-||+||||.||.|.+.+......|-| -..-++.+ .-.+-+.|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-s~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-SPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-CCCceecCCCCc
Confidence 6899999999999999999999998777555554 22222222 345678899994
No 408
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=9.3e-06 Score=59.85 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=90.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc------ccCCCceeeEE----------------E-------------E---
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS------TIPTIGFNVET----------------V-------------Q--- 57 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~----------------~-------------~--- 57 (182)
.-++|.-+|..--||||++..+.+-.... +--|+...+.. + +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 45799999999999999999988732111 11111100000 0 0
Q ss_pred ----e-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc----chHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 58 ----Y-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----DRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 58 ----~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+ --.++.+.|.||++-..+.......-.|++++.+..+.+ .+-+-+.. -++. .=..++++-||+
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~LkhiiilQNKi 189 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIILQNKI 189 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEEechh
Confidence 0 013678899999876544333322334777777766543 33222221 1121 235678889999
Q ss_pred CCCCCCCHHH-HHHhhc-ccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 129 DLPGALDDAA-VSEALE-LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 129 D~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
|+..+....+ -.+... .....-.+.|++.+||.-..|++-+.++++..+
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 9986543211 111111 111123467899999999999999999999865
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.80 E-value=0.0001 Score=56.73 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=60.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-----------------------eeeEEEEe-----------CCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-----------------------FNVETVQY-----------NNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-----------------------~~~~~~~~-----------~~~ 61 (182)
+-.|+++||.|+||||-+-+|...-... ....++ +....+.- ..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 4469999999999999887776422200 111111 11111100 456
Q ss_pred EEEEEECCCCCCChhh----hhhhCCCC--CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY----WRCYFPNT--EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~----~~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D~~~~ 133 (182)
.++++||.|...+... ...++..+ .-.-+|++++... +++...+..+ ..+|+ -+++||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f------~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF------SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh------ccCCcceeEEEcccccCc
Confidence 8999999998765442 33333333 3456677765432 2333332332 22222 567799997653
No 410
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.79 E-value=1.7e-05 Score=54.87 Aligned_cols=23 Identities=9% Similarity=-0.104 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.||+++|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.77 E-value=0.00023 Score=53.86 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEEEEECCCCCCChhhhhhhCC--------CCCEEEEEEeCCCcchHHHHHHHH-HHHHhccCCCCCeEEEEeeCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQTAKEEF-HAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
....++++.|...-.+....++. ..+++|.|+|+.+......-.... .++ .. .+ ++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~---AD---~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY---AD---RILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh---CC---EEEEeccccC
Confidence 45677888887654444433322 247899999986532211111111 122 21 22 8899999998
Q ss_pred CC
Q 030122 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
++
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 63
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00016 Score=57.74 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=59.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC-----Ccc--c------c-----------CCCceeeEEEE-----------eCCE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE-----VVS--T------I-----------PTIGFNVETVQ-----------YNNI 61 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~-----~~~--~------~-----------~t~~~~~~~~~-----------~~~~ 61 (182)
.-.|+|+|+.|+||||++.+|...- ... . . ...++...... ...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3478999999999999998887420 000 0 0 01111111110 1357
Q ss_pred EEEEEECCCCCCChhh-h-----hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPY-W-----RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~-~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++||+|....... . ..... ....++|++.+. +..++...++.+.. ..+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 8999999996543221 1 01111 234667777653 23333333333321 246779999999854
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=4e-05 Score=59.76 Aligned_cols=107 Identities=10% Similarity=0.091 Sum_probs=58.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC------Cc-c--ccC---------------CCceeeEEE-----------EeCCEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE------VV-S--TIP---------------TIGFNVETV-----------QYNNIK 62 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~------~~-~--~~~---------------t~~~~~~~~-----------~~~~~~ 62 (182)
-+|+++|+.|+||||++..|.+.. .. . ... ..++..... ...+..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 489999999999999999776421 00 0 000 011111100 014467
Q ss_pred EEEEECCCCCCChh----hhhhhC--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 63 FQVWDLGGQTSIRP----YWRCYF--PNTEAVIYVVDSSD-TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 63 ~~i~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
+.++||+|...... ....+. ....-.++|+|++- ...+.++...+.. --+--+++||.|...
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~--------~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG--------HGIHGCIITKVDEAA 340 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC--------CCCCEEEEEeeeCCC
Confidence 89999999765322 111111 23456788998874 3334444332221 123457778888764
No 414
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=2.7e-05 Score=53.62 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+++|++|||||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 415
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.70 E-value=3.3e-05 Score=51.32 Aligned_cols=19 Identities=16% Similarity=-0.118 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
|+++|+|||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999987
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=0.00026 Score=52.56 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=60.1
Q ss_pred hhhhhCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+.+.-..+.|-.++|+.+.+|+- ..-+..++-.. . ..++.-++++||+|+.+...... ...+......++++
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e---~~gi~pvIvlnK~DL~~~~~~~~---~~~~~~y~~~gy~v 144 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA-E---AGGIEPVIVLNKIDLLDDEEAAV---KELLREYEDIGYPV 144 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH-H---HcCCcEEEEEEccccCcchHHHH---HHHHHHHHhCCeeE
Confidence 33444456788888888887753 33333332222 2 26788888899999997654432 11112224567789
Q ss_pred EEecccCCCCHHHHHHHHHH
Q 030122 156 FKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~ 175 (182)
+.+|+++++|++++.+++..
T Consensus 145 ~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 145 LFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEecCcCcccHHHHHHHhcC
Confidence 99999999999998887753
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.68 E-value=0.00011 Score=57.74 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=59.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC----CCc------c-ccCC-----------CceeeEEE--------------Ee-
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG----EVV------S-TIPT-----------IGFNVETV--------------QY- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~----~~~------~-~~~t-----------~~~~~~~~--------------~~- 58 (182)
.+..|+++|++|+||||.+..|... ... + +.+. .++..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 3567999999999999999887641 000 0 1110 11111100 00
Q ss_pred CCEEEEEEECCCCCCChhhh------hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~ 131 (182)
....+.++||+|........ ......+|.+++|+|++... +.......... .+ ..-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC
Confidence 23478999999976543211 11233678999999986542 22222222211 12 235677888865
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 418
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.68 E-value=5.4e-05 Score=53.88 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=31.6
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCC-CeEEEEeeCCCCC
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG-AVALIFANKQDLP 131 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~i~v~nK~D~~ 131 (182)
...+++|.+|.|+|.+. .++..+.+ +.++... .+ .++.+|+||.|..
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence 34567999999999874 34443333 2333333 34 7999999999965
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.68 E-value=0.00021 Score=44.82 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=49.7
Q ss_pred EEEEec-CCCChHHHHHHhhcCCCccccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 20 GFSFFI-DNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 20 i~viG~-~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
|+|.|. .|+||||+...+...-.. .+.....++. ..+.+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-H
Confidence 567774 699999988876632211 1111122222 2267899999986533 2335677899999999765 4
Q ss_pred chHHHHHHHHH
Q 030122 98 DRIQTAKEEFH 108 (182)
Q Consensus 98 ~s~~~~~~~~~ 108 (182)
.++.....++.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 420
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00022 Score=55.22 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=56.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC----CCc------c-ccC-------C----CceeeE-------EEEe------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG----EVV------S-TIP-------T----IGFNVE-------TVQY------ 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~----~~~------~-~~~-------t----~~~~~~-------~~~~------ 58 (182)
...+..|+++|..||||||.+-+|... ... + +.| + +++... .+.+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 334568999999999999998887651 100 0 111 0 111111 1111
Q ss_pred ----CCEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHH
Q 030122 59 ----NNIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHA 109 (182)
Q Consensus 59 ----~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 109 (182)
..+.+.|+||+|...... +.. .-.-+.|=+++|+|+.-..........|++
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 346899999999765433 211 123368999999998765544444444444
No 421
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.65 E-value=0.001 Score=51.67 Aligned_cols=26 Identities=8% Similarity=-0.238 Sum_probs=22.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+=|.|+||..+|||||++||..
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHH
Confidence 34467799999999999999999997
No 422
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.65 E-value=0.00022 Score=47.36 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred EEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch
Q 030122 22 SFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR 99 (182)
Q Consensus 22 viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 99 (182)
.-|.+|+|||++.-.+...-......+.-++.. ... -.+.+.++|+|+.. .......+..+|.++++.+.+ ..+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D-~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDAD-LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC-CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhH
Confidence 446789999998776653211000000000000 000 12678999999743 333455678899999999876 444
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 100 IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+......++.+.... ...++.++.|+++..
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 555444444443322 456788999999743
No 423
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0002 Score=55.09 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.|+++|+.||||||++.++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.60 E-value=0.00023 Score=55.91 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=36.7
Q ss_pred CEEEEEEECCCCCCChh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.++||+|...... +... -....+.+++|+|.... +++......+... .+ ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~---~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA---LG-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh---CC-CCEEEEeCccCcc
Confidence 46799999999654322 1111 11256788999997543 3333333333221 11 2356779999643
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=9.5e-05 Score=57.51 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=59.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC-Cc----------c------------ccCCCceeeEEEE----------eCCEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE-VV----------S------------TIPTIGFNVETVQ----------YNNIKF 63 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~-~~----------~------------~~~t~~~~~~~~~----------~~~~~~ 63 (182)
...++++|++||||||++.+|.... .. + +....++...... -.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468999999999999999987421 00 0 0011112111110 036788
Q ss_pred EEEECCCCCCC-hhh---hhhhCC-----CCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 64 QVWDLGGQTSI-RPY---WRCYFP-----NTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 64 ~i~d~~g~~~~-~~~---~~~~~~-----~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++||+|.... ... +..++. ...-.++|+|++... ....+...+..+ -+--+++||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~--------~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESL--------NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCC--------CCCEEEEEcccCCC
Confidence 99999997532 111 122221 234688999987653 344433332111 23467789999764
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00014 Score=60.62 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=61.0
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc-----c-ccC------------------CCceeeEEE-----------EeCCEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV-----S-TIP------------------TIGFNVETV-----------QYNNIKF 63 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~-----~-~~~------------------t~~~~~~~~-----------~~~~~~~ 63 (182)
-|+|+|+.|+||||.+.+|...-.. . ..- ..++..... ...+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 6899999999999999998852210 0 000 000101000 0134578
Q ss_pred EEEECCCCCCChh-h---hhhh--CCCCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 64 QVWDLGGQTSIRP-Y---WRCY--FPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 64 ~i~d~~g~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.++||+|...... + .... ....+-.++|+|.+.. +.+.++...|...... -+--+|+||.|....
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEATH 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence 9999999543221 1 1111 2245678899998743 4455555544432110 134677889987653
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.58 E-value=0.00038 Score=54.66 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCEEEEEEECCCCCCChh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++.+.++||+|...... +... .....+.+++|+|.... ++...+...+.... + ..-++.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 346799999999654322 1111 12357889999998643 33333333332211 1 3466788998643
No 428
>PRK14530 adenylate kinase; Provisional
Probab=97.56 E-value=6.6e-05 Score=53.63 Aligned_cols=22 Identities=9% Similarity=-0.114 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+|+++|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999874
No 429
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.55 E-value=4.5e-05 Score=52.01 Aligned_cols=22 Identities=9% Similarity=-0.256 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 430
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.55 E-value=7.1e-05 Score=43.42 Aligned_cols=21 Identities=10% Similarity=-0.249 Sum_probs=18.8
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999998754
No 431
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=8.9e-05 Score=52.28 Aligned_cols=24 Identities=13% Similarity=-0.224 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++||+|||||||++.+.+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 689999999999999998875544
No 432
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.00029 Score=51.98 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC----Ccc------------------ccCCCceeeEEEE--------------eCCE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE----VVS------------------TIPTIGFNVETVQ--------------YNNI 61 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~----~~~------------------~~~t~~~~~~~~~--------------~~~~ 61 (182)
-+++++|++|+||||++..+...- ... +....++...... ..++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 489999999999999988775421 000 1111121111100 0256
Q ss_pred EEEEEECCCCCCChh-h---hhhhC--CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRP-Y---WRCYF--PNTEAVIYVVDSSD-TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~-~---~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+.++||+|...... + +..++ ...+-.++|+|++. ........ +.... -.+--+++||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~---~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII---TNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH---HHhCC-----CCCCEEEEEeecCCCC
Confidence 899999999764322 1 11222 24567899998763 33333333 22211 1344678899998753
No 433
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.53 E-value=0.001 Score=43.65 Aligned_cols=24 Identities=4% Similarity=-0.223 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998654
No 434
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0015 Score=47.13 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=64.4
Q ss_pred eEEEEEecCCC--ChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe----CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 18 VLGFSFFIDNF--GNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 18 ~~i~viG~~~~--GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
..++|.|-.|+ ||.+++.+|....+.. ....-....+ ++.. ..+.+-+.-.. .+.+-+. ....+...++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn-~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPN-AEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCC-cccccceeeE
Confidence 46889999998 9999999999877755 2111111111 1111 12222222111 1122221 1122345789
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCC-eEEEEeeCCCCCCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGAL 134 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~i~v~nK~D~~~~~ 134 (182)
++|||++....+..+..|+...-. ... -.+.++||.|..+++
T Consensus 83 vmvfdlse~s~l~alqdwl~htdi----nsfdillcignkvdrvphh 125 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDI----NSFDILLCIGNKVDRVPHH 125 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccc----ccchhheecccccccccch
Confidence 999999999999999999653211 122 345667999987653
No 435
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00053 Score=53.95 Aligned_cols=67 Identities=10% Similarity=0.161 Sum_probs=38.0
Q ss_pred CCEEEEEEECCCCCCChh----hhhhhCC---CCCEEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRP----YWRCYFP---NTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~ 130 (182)
....+.++||+|...... ....++. ...-..+|++.+-. ..+..+...+.. .+ +--++.||.|.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~-------~~-~~~vI~TKlDe 369 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR-------LP-LDGLIFTKLDE 369 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC-------CC-CCEEEEecccc
Confidence 356899999999765431 1222333 23466788887543 334443332221 11 23688999998
Q ss_pred CCC
Q 030122 131 PGA 133 (182)
Q Consensus 131 ~~~ 133 (182)
...
T Consensus 370 t~~ 372 (424)
T PRK05703 370 TSS 372 (424)
T ss_pred ccc
Confidence 543
No 436
>PRK03839 putative kinase; Provisional
Probab=97.51 E-value=7.5e-05 Score=51.78 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+++|+|||||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 437
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=8.1e-05 Score=51.80 Aligned_cols=23 Identities=9% Similarity=-0.243 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 438
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.49 E-value=0.00014 Score=53.82 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=38.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCCceeeEE-EEe-CCEEEEEEECCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTIGFNVET-VQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~-~~~-~~~~~~i~d~~g~ 71 (182)
...++.+.|+|-||+|||||+|.+....... ..|.+...... +.+ ..-.+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3457899999999999999999887643222 12222222222 444 4456888999994
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.49 E-value=0.00011 Score=41.41 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
..++.|+.|||||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988763
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00087 Score=52.03 Aligned_cols=110 Identities=13% Similarity=0.078 Sum_probs=60.7
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCC-------cc-------------------ccCCCceeeEEEEe-----------C
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEV-------VS-------------------TIPTIGFNVETVQY-----------N 59 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~-------~~-------------------~~~t~~~~~~~~~~-----------~ 59 (182)
...|+++|++|+||||.+.++...-. .. +....++....... .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 34799999999999999988763100 00 00111111111111 4
Q ss_pred CEEEEEEECCCCCCChhh----hhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPY----WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~----~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.++||+|......+ ...++.. ..-.++|+|++... ..+...+..... --+--+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 578999999997543321 1122221 23588999987642 233333333311 124467889999765
Q ss_pred C
Q 030122 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
No 441
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.48 E-value=0.00086 Score=51.29 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
.++.|--|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 677799999999999999863
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00012 Score=47.89 Aligned_cols=26 Identities=8% Similarity=-0.259 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVV 43 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~ 43 (182)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 37899999999999999999865543
No 443
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=50.98 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.+|+++|+|||||||+..++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999864
No 444
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.43 E-value=0.00012 Score=47.48 Aligned_cols=21 Identities=14% Similarity=-0.227 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 445
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.43 E-value=0.00019 Score=48.80 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=31.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
.|.++|.+|||||||++++... ....++....+.+....+.+ |.+|...+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~-----l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~ 52 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA-----LSARGLRVAVIKHDHHDFDI-DTPGKDSY 52 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-----HHHcCCcEEEEEecCCcccc-cCccchHH
Confidence 5899999999999999999842 22233444455553333333 66664443
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.42 E-value=0.00015 Score=47.82 Aligned_cols=23 Identities=9% Similarity=-0.286 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887543
No 447
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00017 Score=51.23 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=22.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+.....|+++|++|||||||+++|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344557889999999999999999754
No 448
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.41 E-value=0.00018 Score=49.41 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|++-|++|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00012 Score=52.65 Aligned_cols=23 Identities=9% Similarity=-0.226 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++|||||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999888744
No 450
>PRK13949 shikimate kinase; Provisional
Probab=97.40 E-value=0.00013 Score=50.14 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.00013 Score=47.49 Aligned_cols=21 Identities=10% Similarity=-0.233 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999844
No 452
>PRK14532 adenylate kinase; Provisional
Probab=97.39 E-value=0.00014 Score=50.84 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.37 E-value=0.00015 Score=48.10 Aligned_cols=21 Identities=14% Similarity=-0.184 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 454
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.37 E-value=0.00014 Score=50.61 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999997
No 455
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.37 E-value=0.00014 Score=50.37 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 456
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.36 E-value=0.00014 Score=51.94 Aligned_cols=23 Identities=9% Similarity=-0.253 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++||+|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999776443
No 457
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.36 E-value=0.00019 Score=50.95 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..-|++.|++|||||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999853
No 458
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.35 E-value=0.00017 Score=51.98 Aligned_cols=22 Identities=14% Similarity=-0.063 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+||+++|+|||||||+...|..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.35 E-value=0.00017 Score=50.30 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.|+++|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997543
No 460
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.33 E-value=0.00015 Score=50.68 Aligned_cols=22 Identities=14% Similarity=-0.043 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+|+++|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 461
>PLN02200 adenylate kinase family protein
Probab=97.33 E-value=0.00028 Score=51.06 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|+++|+|||||||+..++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 462
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.32 E-value=0.00021 Score=47.50 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|.|+|+.|||||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 463
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.31 E-value=0.0002 Score=51.77 Aligned_cols=25 Identities=8% Similarity=-0.225 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..+|++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999988754
No 464
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.31 E-value=0.00017 Score=51.36 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.31 E-value=0.00018 Score=49.88 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=18.5
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00019 Score=49.66 Aligned_cols=22 Identities=14% Similarity=-0.171 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
No 467
>PRK02496 adk adenylate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=49.38 Aligned_cols=22 Identities=9% Similarity=-0.238 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.||+++|+|||||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 468
>PRK00625 shikimate kinase; Provisional
Probab=97.26 E-value=0.00023 Score=49.10 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 469
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.26 E-value=0.0002 Score=50.39 Aligned_cols=21 Identities=5% Similarity=-0.331 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 470
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.00025 Score=46.90 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998874
No 471
>PRK08233 hypothetical protein; Provisional
Probab=97.26 E-value=0.00028 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|++.|++||||||+.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999853
No 472
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.25 E-value=0.00029 Score=50.09 Aligned_cols=25 Identities=4% Similarity=-0.245 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998753
No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00022 Score=50.29 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-.++|||+|||||||++.|.
T Consensus 35 VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 47999999999999998875
No 474
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.24 E-value=0.00013 Score=55.73 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=40.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe--CCEEEEEEECCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~g~ 71 (182)
....++-|.|||-||+||||++|.|...+.....|.-|-... -.| --.++-++|.||-
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV-WQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV-WQYITLMKRIFLIDCPGV 362 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH-HHHHHHHhceeEecCCCc
Confidence 456678999999999999999999999888775554431100 000 2246678899994
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.22 E-value=0.00029 Score=44.41 Aligned_cols=20 Identities=10% Similarity=-0.306 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
.++++|++|||||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999875
No 476
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0017 Score=51.44 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=68.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCC------------Ccc---ccCCCceeeEE--EEe------------------CCEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE------------VVS---TIPTIGFNVET--VQY------------------NNIKF 63 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~------------~~~---~~~t~~~~~~~--~~~------------------~~~~~ 63 (182)
++.+|....-|||||...|.... |.+ -.+.-++.++. +.. .+..+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 58899999999999999988532 111 00001111111 111 34678
Q ss_pred EEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 64 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
+++|.||+-+|.+..-..++-.|+++.|+|..+.--.+. ...+++.+. .++.-++++||.|..
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhHH
Confidence 999999999999988888888999999999866422111 111122222 234446788999953
No 477
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00027 Score=46.91 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+|++-|-||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567999999999999999999984
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.20 E-value=0.0003 Score=49.07 Aligned_cols=23 Identities=9% Similarity=-0.366 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.++++|++||||||+++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999998854
No 479
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.19 E-value=0.00025 Score=50.85 Aligned_cols=21 Identities=14% Similarity=-0.301 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|++.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 480
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.19 E-value=0.00031 Score=48.45 Aligned_cols=23 Identities=13% Similarity=-0.204 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+|+++|++||||||+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999999853
No 481
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00031 Score=50.22 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|+.|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 699999999999999998876
No 482
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.18 E-value=0.00034 Score=48.25 Aligned_cols=21 Identities=5% Similarity=-0.206 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+++++|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 799999999999999998876
No 483
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.17 E-value=0.0018 Score=47.76 Aligned_cols=23 Identities=4% Similarity=-0.281 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+|.|++||||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 59999999999999999887543
No 484
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.0003 Score=49.71 Aligned_cols=22 Identities=14% Similarity=-0.215 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++|||||||++.+.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999864
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00032 Score=48.97 Aligned_cols=23 Identities=13% Similarity=-0.156 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|+++||+|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999999864
No 486
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.17 E-value=0.00033 Score=50.03 Aligned_cols=21 Identities=5% Similarity=-0.222 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+|+|+|||||||+.+.|..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 487
>PRK14529 adenylate kinase; Provisional
Probab=97.16 E-value=0.00034 Score=50.18 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+.++|..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988764
No 488
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.15 E-value=0.00039 Score=45.33 Aligned_cols=23 Identities=13% Similarity=-0.178 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-+++.|++|+|||++++++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998644
No 489
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.15 E-value=0.0005 Score=46.64 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=34.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCCh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 75 (182)
-+.++|..|||||||+.++.. ....-|+....+...+-. --.|++|.+.++
T Consensus 4 Il~ivG~k~SGKTTLie~lv~-----~L~~~G~rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVR-----KLKARGYRVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred EEEEEecCCCChhhHHHHHHH-----HHHhCCcEEEEEEecCCC-CCCCCCCCccch
Confidence 478999999999999999972 222334555556552222 335788877764
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.15 E-value=0.00026 Score=48.20 Aligned_cols=22 Identities=9% Similarity=-0.152 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHhhcCC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~~ 41 (182)
|+++|++||||||+.+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999987543
No 491
>PRK14528 adenylate kinase; Provisional
Probab=97.15 E-value=0.00038 Score=48.61 Aligned_cols=21 Identities=10% Similarity=-0.257 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|+|||||||+.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
No 492
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.00033 Score=49.40 Aligned_cols=23 Identities=9% Similarity=-0.242 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|++.|++||||||+++.+...-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999877543
No 493
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.00034 Score=52.99 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++||+||||||+++-+.+-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988743
No 494
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.13 E-value=0.0005 Score=47.29 Aligned_cols=23 Identities=13% Similarity=-0.146 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-+.|+|++|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999844
No 495
>PLN02459 probable adenylate kinase
Probab=97.12 E-value=0.00052 Score=50.21 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..++|+++|+|||||||+...+..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998875
No 496
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.12 E-value=0.018 Score=39.48 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=43.2
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.+.++|+|+.... .....+..+|.+|++++.+. .++..+..++..+... ......+++|+.+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 7999999985433 23445678999999998763 4455555554444332 2345778999998754
No 497
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.12 E-value=0.00051 Score=45.11 Aligned_cols=32 Identities=19% Similarity=-0.022 Sum_probs=24.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG 50 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~ 50 (182)
.|++.|+.|+|||||++.+...-... .+||..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~ 58 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFT 58 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCee
Confidence 68999999999999999998654322 566643
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.11 E-value=0.00038 Score=50.76 Aligned_cols=21 Identities=10% Similarity=-0.206 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999987
No 499
>PRK06547 hypothetical protein; Provisional
Probab=97.10 E-value=0.00053 Score=47.25 Aligned_cols=26 Identities=8% Similarity=-0.201 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568888899999999999999754
No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00045 Score=47.77 Aligned_cols=20 Identities=10% Similarity=-0.147 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
+++++|+.|||||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999999999875
Done!