Query 030122
Match_columns 182
No_of_seqs 132 out of 1726
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 14:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.8E-39 2E-43 227.8 11.6 163 12-180 8-177 (216)
2 4bas_A ADP-ribosylation factor 100.0 3.6E-37 1.2E-41 215.9 18.6 180 1-180 1-190 (199)
3 1r8s_A ADP-ribosylation factor 100.0 9.9E-37 3.4E-41 207.4 19.8 163 18-180 1-163 (164)
4 1upt_A ARL1, ADP-ribosylation 100.0 5.3E-36 1.8E-40 205.0 23.4 165 16-180 6-170 (171)
5 1fzq_A ADP-ribosylation factor 100.0 8.9E-37 3E-41 211.4 19.4 168 14-181 13-180 (181)
6 1zd9_A ADP-ribosylation factor 100.0 2.1E-36 7.1E-41 210.6 19.2 168 14-181 19-187 (188)
7 2b6h_A ADP-ribosylation factor 100.0 4E-36 1.4E-40 210.0 20.2 168 13-180 25-192 (192)
8 2h17_A ADP-ribosylation factor 100.0 2.7E-36 9.3E-41 208.8 18.9 166 11-176 15-180 (181)
9 2x77_A ADP-ribosylation factor 100.0 1.2E-35 4E-40 206.8 21.4 167 15-181 20-186 (189)
10 2h57_A ADP-ribosylation factor 100.0 8.5E-36 2.9E-40 207.7 20.2 170 12-181 16-189 (190)
11 1ksh_A ARF-like protein 2; sma 100.0 2.4E-35 8.1E-40 204.7 21.7 166 15-180 16-181 (186)
12 1zj6_A ADP-ribosylation factor 100.0 2.4E-35 8.3E-40 204.9 21.0 165 15-179 14-178 (187)
13 1moz_A ARL1, ADP-ribosylation 100.0 1.4E-35 4.9E-40 205.2 18.8 166 15-180 16-181 (183)
14 1m2o_B GTP-binding protein SAR 100.0 6.5E-35 2.2E-39 203.5 20.2 162 15-176 21-189 (190)
15 1f6b_A SAR1; gtpases, N-termin 100.0 6.6E-35 2.3E-39 204.7 18.9 163 15-177 23-197 (198)
16 3o47_A ADP-ribosylation factor 100.0 4.4E-34 1.5E-38 214.6 20.1 167 15-181 163-329 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 5.7E-33 2E-37 219.1 20.8 167 14-180 319-485 (497)
18 3ihw_A Centg3; RAS, centaurin, 100.0 3E-33 1E-37 194.1 16.5 162 11-181 14-182 (184)
19 3t5g_A GTP-binding protein RHE 100.0 2.4E-33 8.1E-38 193.7 14.4 162 15-181 4-171 (181)
20 3q72_A GTP-binding protein RAD 100.0 1.4E-33 4.8E-38 192.1 12.5 160 17-180 2-165 (166)
21 3oes_A GTPase rhebl1; small GT 100.0 1.1E-33 3.6E-38 198.9 12.1 164 12-180 19-188 (201)
22 2hup_A RAS-related protein RAB 100.0 1.7E-32 5.8E-37 192.8 16.8 163 12-180 24-194 (201)
23 1x3s_A RAS-related protein RAB 100.0 2.6E-32 9E-37 190.4 17.1 166 10-180 8-179 (195)
24 3kkq_A RAS-related protein M-R 100.0 2.1E-32 7.2E-37 189.3 16.5 164 12-180 13-183 (183)
25 1ek0_A Protein (GTP-binding pr 100.0 1.3E-33 4.3E-38 192.8 10.1 158 16-179 2-169 (170)
26 2gf9_A RAS-related protein RAB 100.0 5.3E-32 1.8E-36 188.4 18.0 163 11-179 16-185 (189)
27 2fn4_A P23, RAS-related protei 100.0 3.4E-33 1.2E-37 192.6 11.8 164 12-180 4-173 (181)
28 1z06_A RAS-related protein RAB 100.0 2.5E-33 8.6E-38 195.1 10.8 165 10-179 13-188 (189)
29 2a5j_A RAS-related protein RAB 100.0 2.7E-32 9.2E-37 190.2 16.0 166 8-179 12-184 (191)
30 1wms_A RAB-9, RAB9, RAS-relate 100.0 6E-32 2.1E-36 185.9 17.4 164 13-180 3-175 (177)
31 3tkl_A RAS-related protein RAB 100.0 1.1E-31 3.8E-36 187.4 19.0 163 12-180 11-180 (196)
32 2ew1_A RAS-related protein RAB 100.0 6.9E-32 2.4E-36 189.8 17.6 162 12-179 21-189 (201)
33 2oil_A CATX-8, RAS-related pro 100.0 1.1E-32 3.8E-37 192.3 13.5 162 12-179 20-188 (193)
34 3tw8_B RAS-related protein RAB 100.0 8.9E-32 3.1E-36 185.4 17.8 160 13-179 5-171 (181)
35 3q3j_B RHO-related GTP-binding 100.0 2.9E-32 9.8E-37 193.4 15.7 162 12-180 22-204 (214)
36 2efe_B Small GTP-binding prote 100.0 1.3E-32 4.6E-37 189.8 13.5 163 12-180 7-176 (181)
37 2nzj_A GTP-binding protein REM 100.0 9.4E-33 3.2E-37 189.5 12.5 159 16-179 3-169 (175)
38 1c1y_A RAS-related protein RAP 100.0 2.9E-32 9.9E-37 185.6 14.7 159 16-178 2-166 (167)
39 2bov_A RAla, RAS-related prote 100.0 1.1E-32 3.8E-37 194.0 12.9 163 12-179 9-177 (206)
40 2atx_A Small GTP binding prote 100.0 2.5E-31 8.4E-36 185.6 19.6 160 13-179 14-193 (194)
41 1u8z_A RAS-related protein RAL 100.0 9.7E-33 3.3E-37 187.9 12.2 159 16-179 3-167 (168)
42 2hxs_A RAB-26, RAS-related pro 100.0 9.5E-33 3.2E-37 190.0 12.0 162 15-181 4-175 (178)
43 2g6b_A RAS-related protein RAB 100.0 1.9E-31 6.6E-36 183.8 18.4 162 13-180 6-175 (180)
44 2a9k_A RAS-related protein RAL 100.0 4.5E-32 1.6E-36 187.8 15.2 164 12-180 13-182 (187)
45 2il1_A RAB12; G-protein, GDP, 100.0 1.8E-32 6.2E-37 191.3 13.2 164 12-180 21-191 (192)
46 1z0f_A RAB14, member RAS oncog 100.0 1.4E-32 4.7E-37 189.2 12.4 161 13-179 11-178 (179)
47 2fu5_C RAS-related protein RAB 100.0 6.1E-33 2.1E-37 192.0 10.7 159 15-179 6-171 (183)
48 3dz8_A RAS-related protein RAB 100.0 9E-34 3.1E-38 197.7 6.5 164 12-181 18-188 (191)
49 3reg_A RHO-like small GTPase; 100.0 1.5E-31 5.1E-36 186.8 17.8 162 13-181 19-190 (194)
50 1r2q_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 188.1 11.6 160 14-179 3-169 (170)
51 3cbq_A GTP-binding protein REM 100.0 1.2E-32 4.2E-37 192.7 12.1 164 13-181 19-190 (195)
52 4dsu_A GTPase KRAS, isoform 2B 100.0 7.3E-32 2.5E-36 187.2 15.9 160 16-179 3-166 (189)
53 3q85_A GTP-binding protein REM 100.0 8.3E-33 2.8E-37 188.9 10.8 160 17-181 2-169 (169)
54 2bme_A RAB4A, RAS-related prot 100.0 3E-32 1E-36 188.9 13.4 160 14-179 7-173 (186)
55 3bc1_A RAS-related protein RAB 100.0 2.1E-31 7E-36 185.6 17.7 162 13-179 7-185 (195)
56 3t1o_A Gliding protein MGLA; G 100.0 7E-32 2.4E-36 188.5 15.3 161 12-179 9-192 (198)
57 2fg5_A RAB-22B, RAS-related pr 100.0 1.9E-31 6.5E-36 186.1 17.3 162 12-179 18-186 (192)
58 1ky3_A GTP-binding protein YPT 100.0 2.5E-32 8.7E-37 188.3 12.7 163 14-180 5-179 (182)
59 1z08_A RAS-related protein RAB 100.0 1.9E-31 6.6E-36 182.1 16.9 159 15-179 4-169 (170)
60 2bcg_Y Protein YP2, GTP-bindin 100.0 5.7E-31 1.9E-35 185.5 19.7 159 15-179 6-171 (206)
61 3c5c_A RAS-like protein 12; GD 100.0 8.6E-33 2.9E-37 192.2 10.0 161 13-179 17-186 (187)
62 3gj0_A GTP-binding nuclear pro 100.0 1.6E-32 5.4E-37 195.5 10.9 163 11-180 9-176 (221)
63 3cpj_B GTP-binding protein YPT 100.0 5.5E-32 1.9E-36 193.0 13.5 161 14-180 10-177 (223)
64 1kao_A RAP2A; GTP-binding prot 100.0 1.6E-31 5.3E-36 181.8 15.1 159 16-179 2-166 (167)
65 1z0j_A RAB-22, RAS-related pro 100.0 6.1E-32 2.1E-36 184.5 13.0 159 15-179 4-169 (170)
66 1g16_A RAS-related protein SEC 100.0 1.3E-31 4.5E-36 182.8 14.5 159 16-180 2-166 (170)
67 1vg8_A RAS-related protein RAB 100.0 1.7E-31 6E-36 188.0 15.4 162 14-179 5-175 (207)
68 1zbd_A Rabphilin-3A; G protein 100.0 5.9E-31 2E-35 184.9 18.0 159 15-179 6-171 (203)
69 1z2a_A RAS-related protein RAB 100.0 1.1E-31 3.7E-36 182.9 13.8 158 15-179 3-167 (168)
70 2f7s_A C25KG, RAS-related prot 100.0 6.3E-32 2.2E-36 191.8 13.2 163 12-179 20-199 (217)
71 2y8e_A RAB-protein 6, GH09086P 100.0 1.4E-32 4.7E-37 189.2 9.2 163 12-180 9-178 (179)
72 2o52_A RAS-related protein RAB 100.0 1.4E-32 4.7E-37 193.1 9.3 160 14-179 22-188 (200)
73 4djt_A GTP-binding nuclear pro 100.0 5.8E-32 2E-36 192.1 12.6 165 12-181 6-177 (218)
74 2g3y_A GTP-binding protein GEM 100.0 5.9E-32 2E-36 191.2 12.4 163 12-179 32-203 (211)
75 2gco_A H9, RHO-related GTP-bin 100.0 1.1E-31 3.8E-36 188.6 13.8 166 12-179 20-200 (201)
76 3clv_A RAB5 protein, putative; 100.0 9.3E-31 3.2E-35 183.6 18.4 157 16-180 6-205 (208)
77 2q3h_A RAS homolog gene family 100.0 3E-31 1E-35 186.2 15.6 162 12-180 15-196 (201)
78 2iwr_A Centaurin gamma 1; ANK 100.0 9.6E-31 3.3E-35 180.2 17.7 156 15-179 5-169 (178)
79 2p5s_A RAS and EF-hand domain 100.0 1.5E-31 5.3E-36 187.5 13.8 163 12-180 23-198 (199)
80 2j1l_A RHO-related GTP-binding 100.0 9.4E-32 3.2E-36 190.7 12.9 166 14-181 31-211 (214)
81 3con_A GTPase NRAS; structural 100.0 1.2E-30 4.1E-35 181.5 18.2 164 12-180 16-184 (190)
82 2ce2_X GTPase HRAS; signaling 100.0 5.7E-31 2E-35 178.7 15.9 158 17-179 3-165 (166)
83 1m7b_A RND3/RHOE small GTP-bin 100.0 4.3E-31 1.5E-35 183.1 15.4 159 14-179 4-183 (184)
84 3cph_A RAS-related protein SEC 100.0 4.5E-31 1.5E-35 186.7 15.5 162 12-179 15-182 (213)
85 1gwn_A RHO-related GTP-binding 100.0 4E-31 1.4E-35 186.4 15.1 161 12-179 23-204 (205)
86 2atv_A RERG, RAS-like estrogen 100.0 3.9E-32 1.3E-36 190.1 9.5 161 14-180 25-192 (196)
87 2j0v_A RAC-like GTP-binding pr 100.0 5.4E-31 1.9E-35 186.3 15.4 158 16-180 8-181 (212)
88 2erx_A GTP-binding protein DI- 100.0 4.3E-32 1.5E-36 185.5 9.3 160 16-180 2-168 (172)
89 2fv8_A H6, RHO-related GTP-bin 100.0 1.9E-30 6.6E-35 183.0 17.6 165 14-180 22-201 (207)
90 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.9E-31 1E-35 183.7 13.1 163 16-180 4-181 (186)
91 3llu_A RAS-related GTP-binding 100.0 1.4E-31 4.8E-36 187.4 11.4 165 10-177 13-195 (196)
92 2yc2_C IFT27, small RAB-relate 100.0 2.3E-31 7.8E-36 187.4 12.0 160 15-179 18-192 (208)
93 2gf0_A GTP-binding protein DI- 100.0 4.7E-31 1.6E-35 184.7 13.1 161 15-180 6-172 (199)
94 4gzl_A RAS-related C3 botulinu 100.0 4.9E-31 1.7E-35 185.8 12.5 162 14-177 27-203 (204)
95 2fh5_B SR-beta, signal recogni 100.0 1.7E-30 5.7E-35 184.1 15.4 163 15-177 5-214 (214)
96 3bwd_D RAC-like GTP-binding pr 100.0 3.6E-31 1.2E-35 182.7 11.3 158 15-179 6-181 (182)
97 3l0i_B RAS-related protein RAB 100.0 7.3E-32 2.5E-36 189.2 7.9 158 14-180 30-197 (199)
98 2zej_A Dardarin, leucine-rich 100.0 2.9E-31 9.8E-36 184.1 8.4 163 17-181 2-180 (184)
99 2lkc_A Translation initiation 100.0 4.5E-29 1.5E-33 171.6 17.0 161 14-180 5-172 (178)
100 2cjw_A GTP-binding protein GEM 100.0 5.7E-30 2E-34 178.7 12.0 159 15-178 4-171 (192)
101 3r7w_B Gtpase2, GTP-binding pr 100.0 1.2E-29 4.3E-34 188.0 12.9 157 19-179 1-174 (331)
102 3th5_A RAS-related C3 botulinu 99.9 2E-31 6.7E-36 187.6 0.0 162 14-177 27-203 (204)
103 2qu8_A Putative nucleolar GTP- 100.0 2.9E-28 9.9E-33 174.3 15.6 163 15-179 27-205 (228)
104 2wji_A Ferrous iron transport 100.0 1.3E-27 4.5E-32 162.8 15.4 147 17-178 3-164 (165)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 3.7E-28 1.3E-32 180.9 13.3 161 17-178 3-180 (307)
106 1svi_A GTP-binding protein YSX 100.0 2E-28 6.8E-33 170.8 11.0 161 12-178 18-194 (195)
107 3c5h_A Glucocorticoid receptor 100.0 2.9E-29 1E-33 182.4 6.4 162 13-178 15-254 (255)
108 3pqc_A Probable GTP-binding pr 100.0 2.7E-28 9.3E-33 169.9 10.6 161 12-179 18-194 (195)
109 2gj8_A MNME, tRNA modification 100.0 1.2E-27 4E-32 164.2 13.2 151 17-179 4-166 (172)
110 2wkq_A NPH1-1, RAS-related C3 100.0 2.5E-27 8.7E-32 177.8 15.8 162 16-179 154-330 (332)
111 2f9l_A RAB11B, member RAS onco 100.0 1.6E-27 5.6E-32 167.0 12.4 158 16-179 4-168 (199)
112 2cxx_A Probable GTP-binding pr 99.9 9.2E-29 3.1E-33 171.7 5.9 161 18-181 2-186 (190)
113 2dyk_A GTP-binding protein; GT 99.9 4.1E-27 1.4E-31 159.2 13.7 147 18-177 2-160 (161)
114 2wjg_A FEOB, ferrous iron tran 99.9 9.7E-27 3.3E-31 161.4 14.4 152 14-180 4-170 (188)
115 3ohm_A Guanine nucleotide-bind 99.9 1.2E-26 4.1E-31 172.8 15.4 137 45-181 151-320 (327)
116 1oix_A RAS-related protein RAB 99.9 5.9E-27 2E-31 163.3 13.0 158 14-177 26-190 (191)
117 1cip_A Protein (guanine nucleo 99.9 1.2E-26 4.1E-31 175.0 14.6 135 46-180 178-345 (353)
118 3a1s_A Iron(II) transport prot 99.9 6.4E-26 2.2E-30 164.9 15.1 149 15-178 3-166 (258)
119 3iev_A GTP-binding protein ERA 99.9 7.7E-26 2.6E-30 168.4 15.8 162 12-179 5-182 (308)
120 1zcb_A G alpha I/13; GTP-bindi 99.9 1.3E-25 4.4E-30 169.9 15.3 133 47-179 187-353 (362)
121 4fid_A G protein alpha subunit 99.9 7.5E-26 2.6E-30 169.0 12.6 135 45-179 145-328 (340)
122 4dhe_A Probable GTP-binding pr 99.9 1.3E-26 4.3E-31 165.0 7.6 163 12-179 24-211 (223)
123 3iby_A Ferrous iron transport 99.9 7E-26 2.4E-30 164.4 10.8 144 18-176 2-164 (256)
124 3dpu_A RAB family protein; roc 99.9 1.2E-25 4.2E-30 178.6 12.7 158 13-180 37-209 (535)
125 1wf3_A GTP-binding protein; GT 99.9 7E-25 2.4E-29 162.6 15.7 155 15-178 5-172 (301)
126 3i8s_A Ferrous iron transport 99.9 9.9E-26 3.4E-30 165.3 10.4 148 16-178 2-168 (274)
127 3b1v_A Ferrous iron uptake tra 99.9 1.9E-25 6.3E-30 163.4 11.3 147 17-178 3-163 (272)
128 2xtz_A Guanine nucleotide-bind 99.9 2.2E-25 7.4E-30 168.1 10.9 121 59-179 181-345 (354)
129 2hjg_A GTP-binding protein ENG 99.9 1.3E-25 4.3E-30 174.5 9.9 160 15-179 173-349 (436)
130 3k53_A Ferrous iron transport 99.9 8.2E-24 2.8E-28 154.9 17.6 150 17-180 3-167 (271)
131 3gee_A MNME, tRNA modification 99.9 2.6E-24 9E-29 168.0 15.5 151 16-178 232-397 (476)
132 1azs_C GS-alpha; complex (lyas 99.9 5.6E-25 1.9E-29 167.7 11.0 132 48-179 204-385 (402)
133 1nrj_B SR-beta, signal recogni 99.9 1.4E-26 4.9E-31 164.2 1.8 118 14-136 9-138 (218)
134 3qq5_A Small GTP-binding prote 99.9 3.1E-25 1.1E-29 170.7 9.2 155 12-178 29-195 (423)
135 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-24 4.1E-29 163.5 10.1 156 19-180 160-331 (342)
136 2e87_A Hypothetical protein PH 99.9 2.6E-23 9E-28 157.7 17.0 158 15-179 165-336 (357)
137 1xzp_A Probable tRNA modificat 99.9 9.2E-24 3.1E-28 165.1 14.5 149 17-178 243-404 (482)
138 1mky_A Probable GTP-binding pr 99.9 1.7E-23 5.7E-28 162.7 14.1 151 18-179 2-166 (439)
139 4dcu_A GTP-binding protein ENG 99.9 5.1E-24 1.7E-28 166.4 11.2 161 14-179 192-369 (456)
140 3sjy_A Translation initiation 99.9 2.9E-23 1E-27 159.8 14.3 162 14-178 5-191 (403)
141 1wb1_A Translation elongation 99.9 9.2E-24 3.1E-28 165.6 10.2 159 12-178 14-188 (482)
142 3geh_A MNME, tRNA modification 99.9 2.2E-23 7.6E-28 162.2 12.0 151 16-180 223-385 (462)
143 2ged_A SR-beta, signal recogni 99.9 6.1E-24 2.1E-28 147.9 7.4 125 14-143 45-181 (193)
144 2hjg_A GTP-binding protein ENG 99.9 7.1E-24 2.4E-28 164.7 8.1 149 18-178 4-164 (436)
145 3izy_P Translation initiation 99.9 3E-24 1E-28 169.2 5.2 158 16-178 3-167 (537)
146 1mky_A Probable GTP-binding pr 99.9 9.7E-23 3.3E-27 158.4 13.3 159 16-179 179-355 (439)
147 2xtp_A GTPase IMAP family memb 99.9 2.1E-22 7.1E-27 146.6 13.1 166 12-180 17-209 (260)
148 3j2k_7 ERF3, eukaryotic polype 99.9 5.3E-22 1.8E-26 154.1 16.1 157 11-171 11-217 (439)
149 3tr5_A RF-3, peptide chain rel 99.9 6.6E-22 2.2E-26 156.3 16.8 114 16-134 12-150 (528)
150 1s0u_A EIF-2-gamma, translatio 99.9 2.6E-22 9E-27 154.7 13.6 159 15-178 6-197 (408)
151 2elf_A Protein translation elo 99.9 3.4E-22 1.2E-26 151.9 12.0 146 19-178 23-179 (370)
152 1jny_A EF-1-alpha, elongation 99.9 9.2E-23 3.1E-27 158.4 9.1 154 16-170 5-204 (435)
153 1ega_A Protein (GTP-binding pr 99.9 1E-21 3.4E-26 145.8 14.2 153 16-178 7-174 (301)
154 1g7s_A Translation initiation 99.9 4.9E-22 1.7E-26 158.8 13.3 155 16-178 4-217 (594)
155 1kk1_A EIF2gamma; initiation o 99.9 3.7E-22 1.2E-26 154.0 11.6 160 14-178 7-199 (410)
156 3lxw_A GTPase IMAP family memb 99.9 1.5E-21 5E-26 141.1 14.0 165 14-180 18-209 (247)
157 2ywe_A GTP-binding protein LEP 99.9 1.6E-21 5.6E-26 155.5 15.1 156 16-178 5-183 (600)
158 2qtf_A Protein HFLX, GTP-bindi 99.9 1.6E-21 5.6E-26 147.8 14.1 159 18-179 179-354 (364)
159 3p26_A Elongation factor 1 alp 99.9 1.1E-22 3.8E-27 159.8 7.9 152 15-168 31-227 (483)
160 3cb4_D GTP-binding protein LEP 99.9 1.2E-21 4E-26 156.5 13.6 153 17-179 4-182 (599)
161 4dcu_A GTP-binding protein ENG 99.9 6.4E-23 2.2E-27 160.2 6.2 155 12-178 18-184 (456)
162 3lxx_A GTPase IMAP family memb 99.9 2.7E-21 9.4E-26 139.0 13.5 166 12-179 24-214 (239)
163 1zun_B Sulfate adenylate trans 99.9 9.8E-22 3.3E-26 152.6 11.7 152 14-169 21-214 (434)
164 1zo1_I IF2, translation initia 99.9 5.2E-23 1.8E-27 161.0 4.4 152 16-176 3-164 (501)
165 2c78_A Elongation factor TU-A; 99.9 1E-21 3.5E-26 151.3 11.4 159 14-177 8-210 (405)
166 3t5d_A Septin-7; GTP-binding p 99.9 3.9E-22 1.3E-26 146.2 8.0 157 15-177 6-202 (274)
167 3izq_1 HBS1P, elongation facto 99.9 8.4E-22 2.9E-26 158.2 9.6 152 15-169 165-362 (611)
168 1d2e_A Elongation factor TU (E 99.9 6.8E-22 2.3E-26 151.9 8.7 157 17-178 3-194 (397)
169 2aka_B Dynamin-1; fusion prote 99.9 2.1E-21 7.3E-26 143.8 10.2 159 13-176 22-250 (299)
170 1f60_A Elongation factor EEF1A 99.8 5E-21 1.7E-25 149.4 10.8 150 16-169 6-202 (458)
171 2h5e_A Peptide chain release f 99.8 6.1E-20 2.1E-24 145.2 16.1 115 15-134 11-150 (529)
172 1r5b_A Eukaryotic peptide chai 99.8 4.2E-22 1.4E-26 155.8 3.3 155 15-170 41-243 (467)
173 1dar_A EF-G, elongation factor 99.8 1.2E-19 3.9E-24 147.8 17.2 118 12-134 7-145 (691)
174 3avx_A Elongation factor TS, e 99.8 1.7E-20 5.7E-25 157.0 10.3 160 13-177 292-484 (1289)
175 2qag_A Septin-2, protein NEDD5 99.8 2.8E-21 9.5E-26 146.6 5.2 156 16-179 36-233 (361)
176 1pui_A ENGB, probable GTP-bind 99.8 5.6E-20 1.9E-24 129.4 11.3 156 13-179 22-199 (210)
177 3mca_A HBS1, elongation factor 99.8 4.7E-22 1.6E-26 159.2 0.2 150 14-167 174-371 (592)
178 2dy1_A Elongation factor G; tr 99.8 9.9E-19 3.4E-23 141.8 16.0 111 16-131 8-139 (665)
179 1udx_A The GTP-binding protein 99.8 8.2E-19 2.8E-23 134.8 14.4 156 19-180 159-326 (416)
180 2xex_A Elongation factor G; GT 99.8 1.7E-18 5.7E-23 141.0 17.0 116 13-133 6-142 (693)
181 3def_A T7I23.11 protein; chlor 99.8 4.7E-19 1.6E-23 129.0 11.5 117 15-132 34-165 (262)
182 2rdo_7 EF-G, elongation factor 99.8 3.6E-18 1.2E-22 139.2 17.2 115 14-133 7-149 (704)
183 2j69_A Bacterial dynamin-like 99.8 4.7E-19 1.6E-23 144.3 10.8 160 16-179 68-325 (695)
184 3l82_B F-box only protein 4; T 99.8 3.5E-19 1.2E-23 123.2 7.6 170 10-181 9-225 (227)
185 1jwy_B Dynamin A GTPase domain 99.8 1.7E-18 5.7E-23 129.2 11.6 161 14-179 21-262 (315)
186 1h65_A Chloroplast outer envel 99.8 1.1E-17 3.8E-22 122.2 13.8 118 15-133 37-169 (270)
187 1u0l_A Probable GTPase ENGC; p 99.8 9.6E-19 3.3E-23 129.7 6.1 130 32-174 32-168 (301)
188 3t34_A Dynamin-related protein 99.7 4.8E-18 1.6E-22 129.0 8.0 150 16-173 33-255 (360)
189 2x2e_A Dynamin-1; nitration, h 99.7 3E-18 1E-22 129.8 6.8 156 15-175 29-254 (353)
190 1wxq_A GTP-binding protein; st 99.7 2.5E-18 8.6E-23 131.7 5.1 80 18-97 1-114 (397)
191 3l2o_B F-box only protein 4; s 99.7 8.7E-18 3E-22 121.6 7.2 112 68-181 194-310 (312)
192 3vqt_A RF-3, peptide chain rel 99.7 3E-16 1E-20 124.6 15.3 111 19-134 33-168 (548)
193 2qnr_A Septin-2, protein NEDD5 99.7 9.2E-18 3.2E-22 124.4 5.5 157 15-179 16-214 (301)
194 3p32_A Probable GTPase RV1496/ 99.7 2.2E-17 7.7E-22 125.0 6.3 108 59-178 170-283 (355)
195 1n0u_A EF-2, elongation factor 99.7 1.5E-16 5E-21 132.0 10.1 113 14-131 16-163 (842)
196 2qpt_A EH domain-containing pr 99.7 1E-16 3.5E-21 127.5 7.9 116 14-134 62-234 (550)
197 2qag_C Septin-7; cell cycle, c 99.7 1.1E-16 3.9E-21 123.0 7.9 156 15-176 29-224 (418)
198 1jal_A YCHF protein; nucleotid 99.7 3.5E-15 1.2E-19 112.5 15.0 80 17-96 2-108 (363)
199 2wsm_A Hydrogenase expression/ 99.7 8.7E-17 3E-21 114.0 5.8 149 16-180 29-215 (221)
200 2www_A Methylmalonic aciduria 99.6 2.3E-16 8E-21 119.1 7.6 107 59-177 165-277 (349)
201 1yrb_A ATP(GTP)binding protein 99.6 8.5E-16 2.9E-20 111.6 8.2 117 61-179 109-257 (262)
202 2p67_A LAO/AO transport system 99.6 4.2E-16 1.4E-20 117.4 5.2 108 59-178 147-260 (341)
203 3j25_A Tetracycline resistance 99.6 1.1E-15 3.9E-20 123.5 7.4 154 19-177 4-237 (638)
204 3zvr_A Dynamin-1; hydrolase, D 99.6 1E-14 3.4E-19 118.9 11.5 156 15-175 49-274 (772)
205 2hf9_A Probable hydrogenase ni 99.6 1.6E-16 5.6E-21 112.9 -1.6 150 16-180 37-225 (226)
206 4fn5_A EF-G 1, elongation fact 99.6 2.1E-13 7.3E-18 111.5 16.5 113 16-133 11-152 (709)
207 2dby_A GTP-binding protein; GD 99.5 1.3E-13 4.3E-18 104.5 12.5 79 18-96 2-111 (368)
208 4a9a_A Ribosome-interacting GT 99.5 6.4E-14 2.2E-18 106.2 8.8 114 16-131 71-195 (376)
209 2qm8_A GTPase/ATPase; G protei 99.4 9.9E-14 3.4E-18 104.2 5.1 108 59-178 146-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 5.4E-13 1.8E-17 101.6 6.4 85 13-97 18-129 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 2.4E-12 8.1E-17 95.4 7.9 98 71-174 66-164 (302)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.8E-10 1.3E-14 86.1 10.2 83 14-96 17-127 (392)
213 3h2y_A GTPase family protein; 99.0 1E-10 3.4E-15 88.9 2.9 100 70-177 55-158 (368)
214 2j37_W Signal recognition part 99.0 2E-09 7E-14 84.5 9.9 153 16-176 100-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 2.5E-10 8.4E-15 86.8 3.2 101 70-178 57-161 (369)
216 2qag_B Septin-6, protein NEDD5 98.8 6.8E-09 2.3E-13 79.8 7.5 59 14-72 39-106 (427)
217 3ec1_A YQEH GTPase; atnos1, at 98.8 5.9E-10 2E-14 84.7 1.6 110 18-133 163-289 (369)
218 3h2y_A GTPase family protein; 98.8 2.8E-09 9.6E-14 80.9 3.6 113 18-136 161-291 (368)
219 1puj_A YLQF, conserved hypothe 98.8 5.6E-09 1.9E-13 76.5 4.6 100 65-178 3-105 (282)
220 3cnl_A YLQF, putative uncharac 98.7 6.1E-09 2.1E-13 75.5 2.1 55 18-73 100-156 (262)
221 3sop_A Neuronal-specific septi 98.7 1.4E-07 4.7E-12 68.7 8.9 109 17-133 2-155 (270)
222 1tq4_A IIGP1, interferon-induc 98.6 3.2E-07 1.1E-11 70.5 10.8 155 17-178 69-252 (413)
223 1puj_A YLQF, conserved hypothe 98.6 2.4E-08 8.2E-13 73.2 4.1 57 15-72 118-176 (282)
224 3dm5_A SRP54, signal recogniti 98.4 5.8E-07 2E-11 69.5 7.2 109 17-132 100-253 (443)
225 1f5n_A Interferon-induced guan 98.4 8.9E-07 3.1E-11 70.8 7.3 59 15-73 36-103 (592)
226 2v3c_C SRP54, signal recogniti 98.3 1.2E-06 4.1E-11 67.8 6.6 107 18-132 100-252 (432)
227 1bif_A 6-phosphofructo-2-kinas 98.2 5.5E-08 1.9E-12 76.2 -2.5 95 15-110 37-145 (469)
228 3szr_A Interferon-induced GTP- 98.2 1.5E-06 5.1E-11 70.2 4.9 23 19-41 47-69 (608)
229 3cnl_A YLQF, putative uncharac 98.2 5.4E-07 1.9E-11 65.2 2.1 92 68-174 4-96 (262)
230 1t9h_A YLOQ, probable GTPase E 98.1 1.3E-06 4.6E-11 64.5 2.7 91 73-172 75-170 (307)
231 3kl4_A SRP54, signal recogniti 98.0 1.1E-05 3.7E-10 62.3 6.7 109 17-132 97-252 (433)
232 1j8m_F SRP54, signal recogniti 97.9 1.1E-05 3.6E-10 59.5 4.6 108 17-132 98-253 (297)
233 2rcn_A Probable GTPase ENGC; Y 97.7 0.00011 3.9E-09 55.3 7.7 82 81-172 127-212 (358)
234 1ye8_A Protein THEP1, hypothet 97.7 2.1E-05 7.2E-10 53.5 2.8 22 19-40 2-23 (178)
235 3q5d_A Atlastin-1; G protein, 97.6 6E-05 2.1E-09 58.4 4.9 24 17-40 67-90 (447)
236 1ukz_A Uridylate kinase; trans 97.6 5.9E-05 2E-09 52.1 4.0 27 13-39 11-37 (203)
237 1kgd_A CASK, peripheral plasma 97.6 4.1E-05 1.4E-09 52.1 3.1 22 19-40 7-28 (180)
238 1zp6_A Hypothetical protein AT 97.6 3.9E-05 1.3E-09 52.4 3.0 23 18-40 10-32 (191)
239 2xxa_A Signal recognition part 97.6 0.00039 1.3E-08 53.8 8.8 109 17-133 100-255 (433)
240 1lvg_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 53.2 2.7 21 19-39 6-26 (198)
241 2cdn_A Adenylate kinase; phosp 97.5 5.7E-05 2E-09 52.1 3.5 30 10-39 13-42 (201)
242 1ak2_A Adenylate kinase isoenz 97.5 5.2E-05 1.8E-09 53.7 3.2 29 11-39 10-38 (233)
243 4dzz_A Plasmid partitioning pr 97.5 0.00063 2.1E-08 46.8 8.4 70 59-132 74-144 (206)
244 3tr0_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 52.4 2.7 22 19-40 9-30 (205)
245 3ney_A 55 kDa erythrocyte memb 97.5 6.6E-05 2.3E-09 51.9 3.2 27 14-40 16-42 (197)
246 3a00_A Guanylate kinase, GMP k 97.5 5.1E-05 1.7E-09 51.8 2.6 22 19-40 3-24 (186)
247 1ly1_A Polynucleotide kinase; 97.5 7.7E-05 2.6E-09 50.3 3.4 22 18-39 3-24 (181)
248 4gp7_A Metallophosphoesterase; 97.5 5.5E-05 1.9E-09 51.0 2.5 20 19-38 11-30 (171)
249 3umf_A Adenylate kinase; rossm 97.5 8.2E-05 2.8E-09 52.2 3.4 26 14-39 25-51 (217)
250 3c8u_A Fructokinase; YP_612366 97.4 9E-05 3.1E-09 51.5 3.4 24 16-39 21-44 (208)
251 3lw7_A Adenylate kinase relate 97.4 7.7E-05 2.6E-09 49.9 2.9 20 18-37 2-21 (179)
252 1ex7_A Guanylate kinase; subst 97.4 7.9E-05 2.7E-09 51.0 2.9 21 20-40 4-24 (186)
253 1znw_A Guanylate kinase, GMP k 97.4 7.1E-05 2.4E-09 52.0 2.7 23 19-41 22-44 (207)
254 3sr0_A Adenylate kinase; phosp 97.4 8.5E-05 2.9E-09 51.7 3.0 22 18-39 1-22 (206)
255 3tau_A Guanylate kinase, GMP k 97.4 7.2E-05 2.5E-09 52.0 2.7 23 19-41 10-32 (208)
256 1z6g_A Guanylate kinase; struc 97.4 7.3E-05 2.5E-09 52.5 2.7 22 19-40 25-46 (218)
257 1s96_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 52.5 2.7 23 19-41 18-40 (219)
258 3asz_A Uridine kinase; cytidin 97.4 0.00011 3.6E-09 51.1 3.4 22 18-39 7-28 (211)
259 2qor_A Guanylate kinase; phosp 97.4 9.1E-05 3.1E-09 51.3 2.8 23 18-40 13-35 (204)
260 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.5E-09 49.3 3.0 21 19-39 3-23 (173)
261 1kag_A SKI, shikimate kinase I 97.4 9.2E-05 3.2E-09 49.7 2.7 22 18-39 5-26 (173)
262 1knq_A Gluconate kinase; ALFA/ 97.3 0.00015 5.3E-09 48.7 3.7 22 18-39 9-30 (175)
263 2bbw_A Adenylate kinase 4, AK4 97.3 0.00011 3.9E-09 52.3 3.1 21 18-38 28-48 (246)
264 2j41_A Guanylate kinase; GMP, 97.3 9.8E-05 3.4E-09 51.0 2.7 24 18-41 7-30 (207)
265 2bdt_A BH3686; alpha-beta prot 97.3 0.0001 3.5E-09 50.3 2.7 21 19-39 4-24 (189)
266 3fb4_A Adenylate kinase; psych 97.3 0.00012 4E-09 51.1 2.9 22 18-39 1-22 (216)
267 3dl0_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 50.9 3.0 21 19-39 2-22 (216)
268 4eun_A Thermoresistant glucoki 97.3 0.00011 3.9E-09 50.6 2.7 22 18-39 30-51 (200)
269 1nks_A Adenylate kinase; therm 97.3 0.00017 5.7E-09 49.1 3.3 21 19-39 3-23 (194)
270 1htw_A HI0065; nucleotide-bind 97.3 0.00014 4.7E-09 48.5 2.7 23 19-41 35-57 (158)
271 3vaa_A Shikimate kinase, SK; s 97.3 0.00014 4.9E-09 50.1 2.9 21 19-39 27-47 (199)
272 3tif_A Uncharacterized ABC tra 97.3 0.00014 4.7E-09 51.7 2.8 22 19-40 33-54 (235)
273 1qhx_A CPT, protein (chloramph 97.3 0.00014 4.8E-09 49.0 2.8 22 18-39 4-25 (178)
274 2rhm_A Putative kinase; P-loop 97.3 0.0002 6.9E-09 48.8 3.6 22 18-39 6-27 (193)
275 3cm0_A Adenylate kinase; ATP-b 97.3 0.0002 6.7E-09 48.6 3.5 22 18-39 5-26 (186)
276 2jaq_A Deoxyguanosine kinase; 97.2 0.00015 5.3E-09 49.8 2.8 21 19-39 2-22 (205)
277 1e4v_A Adenylate kinase; trans 97.2 0.00018 6.1E-09 50.2 3.1 21 19-39 2-22 (214)
278 3t61_A Gluconokinase; PSI-biol 97.2 0.00015 5.1E-09 50.0 2.7 22 18-39 19-40 (202)
279 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6E-09 54.3 3.1 24 19-42 217-240 (358)
280 2if2_A Dephospho-COA kinase; a 97.2 0.00017 6E-09 49.7 2.9 21 19-39 3-23 (204)
281 2pcj_A ABC transporter, lipopr 97.2 0.00017 5.9E-09 50.8 2.9 22 19-40 32-53 (224)
282 1uf9_A TT1252 protein; P-loop, 97.2 0.00024 8.1E-09 48.8 3.6 25 16-40 7-31 (203)
283 1tev_A UMP-CMP kinase; ploop, 97.2 0.00022 7.4E-09 48.6 3.3 22 18-39 4-25 (196)
284 2i3b_A HCR-ntpase, human cance 97.2 0.00015 5.2E-09 49.7 2.5 22 19-40 3-24 (189)
285 3ec2_A DNA replication protein 97.2 0.00013 4.6E-09 49.3 2.2 23 18-40 39-61 (180)
286 3tlx_A Adenylate kinase 2; str 97.2 0.00024 8.2E-09 50.7 3.5 24 16-39 28-51 (243)
287 3trf_A Shikimate kinase, SK; a 97.2 0.00021 7.2E-09 48.5 3.1 22 18-39 6-27 (185)
288 1jjv_A Dephospho-COA kinase; P 97.2 0.00023 7.9E-09 49.2 3.3 22 18-39 3-24 (206)
289 3uie_A Adenylyl-sulfate kinase 97.2 0.00018 6E-09 49.7 2.7 22 18-39 26-47 (200)
290 1kht_A Adenylate kinase; phosp 97.2 0.00021 7.2E-09 48.6 3.0 22 18-39 4-25 (192)
291 3iij_A Coilin-interacting nucl 97.2 0.00024 8.3E-09 48.0 3.3 22 18-39 12-33 (180)
292 1gvn_B Zeta; postsegregational 97.2 0.00026 9.1E-09 51.8 3.7 24 16-39 32-55 (287)
293 1y63_A LMAJ004144AAA protein; 97.2 0.00026 8.9E-09 48.2 3.4 23 18-40 11-33 (184)
294 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 7E-09 50.2 2.9 22 18-39 6-27 (227)
295 2onk_A Molybdate/tungstate ABC 97.2 0.00023 7.9E-09 50.7 3.1 23 19-41 26-48 (240)
296 2cbz_A Multidrug resistance-as 97.2 0.00023 7.9E-09 50.6 3.1 22 19-40 33-54 (237)
297 2plr_A DTMP kinase, probable t 97.2 0.00027 9.4E-09 48.8 3.4 22 18-39 5-26 (213)
298 2v9p_A Replication protein E1; 97.2 0.00021 7.1E-09 52.7 2.9 21 19-39 128-148 (305)
299 3gfo_A Cobalt import ATP-bindi 97.2 0.00021 7.1E-09 52.0 2.8 23 19-41 36-58 (275)
300 1b0u_A Histidine permease; ABC 97.2 0.00022 7.4E-09 51.5 2.8 23 19-41 34-56 (262)
301 4a74_A DNA repair and recombin 97.2 0.00021 7.3E-09 50.0 2.8 21 19-39 27-47 (231)
302 1sgw_A Putative ABC transporte 97.2 0.00022 7.7E-09 49.9 2.8 22 19-40 37-58 (214)
303 2ff7_A Alpha-hemolysin translo 97.2 0.00024 8.3E-09 50.8 3.1 23 19-41 37-59 (247)
304 2eyu_A Twitching motility prot 97.1 0.0002 6.9E-09 51.7 2.7 21 19-39 27-47 (261)
305 4e22_A Cytidylate kinase; P-lo 97.1 0.00029 9.8E-09 50.5 3.4 21 18-38 28-48 (252)
306 1aky_A Adenylate kinase; ATP:A 97.1 0.00024 8.4E-09 49.7 3.0 22 18-39 5-26 (220)
307 2ehv_A Hypothetical protein PH 97.1 0.00022 7.6E-09 50.6 2.9 20 19-38 32-51 (251)
308 2wwf_A Thymidilate kinase, put 97.1 0.00037 1.3E-08 48.3 3.9 23 17-39 10-32 (212)
309 1mv5_A LMRA, multidrug resista 97.1 0.00025 8.7E-09 50.6 3.1 22 19-40 30-51 (243)
310 1zd8_A GTP:AMP phosphotransfer 97.1 0.00026 9E-09 49.8 3.1 22 18-39 8-29 (227)
311 3b85_A Phosphate starvation-in 97.1 0.00022 7.4E-09 49.7 2.6 22 19-40 24-45 (208)
312 4g1u_C Hemin import ATP-bindin 97.1 0.00025 8.7E-09 51.3 3.0 22 19-40 39-60 (266)
313 1via_A Shikimate kinase; struc 97.1 0.00023 8E-09 47.9 2.7 21 19-39 6-26 (175)
314 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.6E-09 49.7 2.9 22 18-39 6-27 (222)
315 2pze_A Cystic fibrosis transme 97.1 0.00027 9.2E-09 50.0 3.1 23 19-41 36-58 (229)
316 1g6h_A High-affinity branched- 97.1 0.00024 8.3E-09 51.1 2.8 23 19-41 35-57 (257)
317 1np6_A Molybdopterin-guanine d 97.1 0.00025 8.5E-09 48.0 2.7 154 18-182 7-174 (174)
318 1qf9_A UMP/CMP kinase, protein 97.1 0.00043 1.5E-08 47.0 3.9 22 18-39 7-28 (194)
319 2xb4_A Adenylate kinase; ATP-b 97.1 0.00028 9.7E-09 49.5 3.0 21 19-39 2-22 (223)
320 2c95_A Adenylate kinase 1; tra 97.1 0.00034 1.2E-08 47.8 3.3 22 18-39 10-31 (196)
321 2ghi_A Transport protein; mult 97.1 0.0003 1E-08 50.7 3.1 22 19-40 48-69 (260)
322 2olj_A Amino acid ABC transpor 97.1 0.0003 1E-08 50.8 3.1 22 19-40 52-73 (263)
323 1ji0_A ABC transporter; ATP bi 97.1 0.0003 1E-08 50.1 3.1 23 19-41 34-56 (240)
324 3lnc_A Guanylate kinase, GMP k 97.1 0.00016 5.5E-09 51.0 1.6 22 19-40 29-51 (231)
325 3be4_A Adenylate kinase; malar 97.1 0.00031 1.1E-08 49.1 3.1 22 18-39 6-27 (217)
326 2qi9_C Vitamin B12 import ATP- 97.1 0.00031 1.1E-08 50.3 3.1 23 19-41 28-50 (249)
327 3aez_A Pantothenate kinase; tr 97.1 0.00026 8.7E-09 52.5 2.7 24 16-39 89-112 (312)
328 2qt1_A Nicotinamide riboside k 97.1 0.00051 1.7E-08 47.5 4.0 23 18-40 22-44 (207)
329 1t9h_A YLOQ, probable GTPase E 97.1 9.8E-05 3.4E-09 54.5 0.4 23 19-41 175-197 (307)
330 2pt5_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 46.8 2.9 21 19-39 2-22 (168)
331 3tqc_A Pantothenate kinase; bi 97.1 0.00039 1.4E-08 51.6 3.6 26 14-39 89-114 (321)
332 2yvu_A Probable adenylyl-sulfa 97.1 0.00044 1.5E-08 47.0 3.6 24 16-39 12-35 (186)
333 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00034 1.2E-08 50.1 3.1 22 19-40 31-52 (250)
334 2ixe_A Antigen peptide transpo 97.1 0.00032 1.1E-08 50.9 3.1 23 19-41 47-69 (271)
335 1vpl_A ABC transporter, ATP-bi 97.1 0.00033 1.1E-08 50.4 3.1 23 19-41 43-65 (256)
336 2vp4_A Deoxynucleoside kinase; 97.1 0.00039 1.3E-08 49.1 3.3 25 16-40 19-43 (230)
337 2zu0_C Probable ATP-dependent 97.1 0.00034 1.2E-08 50.6 3.1 22 19-40 48-69 (267)
338 2ihy_A ABC transporter, ATP-bi 97.1 0.00033 1.1E-08 51.0 3.1 23 19-41 49-71 (279)
339 2bwj_A Adenylate kinase 5; pho 97.1 0.00033 1.1E-08 48.0 2.9 22 18-39 13-34 (199)
340 3cwq_A Para family chromosome 97.1 0.0041 1.4E-07 43.1 8.5 68 59-132 66-134 (209)
341 2v54_A DTMP kinase, thymidylat 97.0 0.00036 1.2E-08 48.0 3.0 23 18-40 5-27 (204)
342 1u0l_A Probable GTPase ENGC; p 97.0 0.00043 1.5E-08 51.0 3.5 24 19-42 171-194 (301)
343 2nq2_C Hypothetical ABC transp 97.0 0.00036 1.2E-08 50.1 3.0 23 19-41 33-55 (253)
344 2p5t_B PEZT; postsegregational 97.0 0.00031 1E-08 50.4 2.7 24 16-39 31-54 (253)
345 1odf_A YGR205W, hypothetical 3 97.0 0.00049 1.7E-08 50.5 3.7 26 14-39 28-53 (290)
346 2f1r_A Molybdopterin-guanine d 97.0 0.00016 5.6E-09 48.8 1.1 21 19-39 4-24 (171)
347 2yz2_A Putative ABC transporte 97.0 0.00039 1.3E-08 50.3 3.1 22 19-40 35-56 (266)
348 2vli_A Antibiotic resistance p 97.0 0.00027 9.1E-09 47.8 2.1 22 18-39 6-27 (183)
349 2ze6_A Isopentenyl transferase 97.0 0.00034 1.2E-08 50.2 2.7 21 19-39 3-23 (253)
350 2iyv_A Shikimate kinase, SK; t 97.0 0.00034 1.2E-08 47.4 2.6 21 19-39 4-24 (184)
351 1uj2_A Uridine-cytidine kinase 97.0 0.00045 1.5E-08 49.4 3.3 26 14-39 19-44 (252)
352 2kjq_A DNAA-related protein; s 97.0 0.00029 1E-08 46.4 2.1 22 19-40 38-59 (149)
353 2pjz_A Hypothetical protein ST 97.0 0.00042 1.4E-08 50.1 3.1 23 19-41 32-54 (263)
354 1rz3_A Hypothetical protein rb 97.0 0.00058 2E-08 47.1 3.7 24 16-39 21-44 (201)
355 2x8a_A Nuclear valosin-contain 97.0 0.00034 1.2E-08 50.8 2.6 21 20-40 47-67 (274)
356 1nn5_A Similar to deoxythymidy 97.0 0.00047 1.6E-08 47.8 3.2 22 18-39 10-31 (215)
357 2pbr_A DTMP kinase, thymidylat 97.0 0.00043 1.5E-08 47.1 2.9 21 19-39 2-22 (195)
358 2yv5_A YJEQ protein; hydrolase 97.0 0.00039 1.3E-08 51.2 2.9 20 19-38 167-186 (302)
359 1lw7_A Transcriptional regulat 97.0 0.00031 1E-08 53.2 2.3 24 17-40 170-193 (365)
360 1gtv_A TMK, thymidylate kinase 97.0 0.00019 6.5E-09 49.8 1.1 21 19-39 2-22 (214)
361 2z0h_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 47.1 3.0 21 19-39 2-22 (197)
362 1ixz_A ATP-dependent metallopr 96.9 0.00042 1.4E-08 49.5 2.7 21 20-40 52-72 (254)
363 2bbs_A Cystic fibrosis transme 96.9 0.00053 1.8E-08 50.3 3.2 23 19-41 66-88 (290)
364 3jvv_A Twitching mobility prot 96.9 0.00042 1.4E-08 52.3 2.7 21 19-39 125-145 (356)
365 1e6c_A Shikimate kinase; phosp 96.9 0.00047 1.6E-08 46.1 2.7 21 19-39 4-24 (173)
366 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00047 1.6E-08 49.6 2.9 22 18-39 5-26 (260)
367 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00049 1.7E-08 51.9 3.0 23 19-41 32-54 (359)
368 2jeo_A Uridine-cytidine kinase 96.9 0.00058 2E-08 48.6 3.3 22 18-39 26-47 (245)
369 3nh6_A ATP-binding cassette SU 96.9 0.00032 1.1E-08 51.8 1.8 22 19-40 82-103 (306)
370 1sq5_A Pantothenate kinase; P- 96.9 0.00071 2.4E-08 50.0 3.7 23 17-39 80-102 (308)
371 1jbk_A CLPB protein; beta barr 96.9 0.0005 1.7E-08 46.3 2.7 23 18-40 44-66 (195)
372 1rj9_A FTSY, signal recognitio 96.9 0.00048 1.7E-08 50.8 2.7 22 18-39 103-124 (304)
373 1xjc_A MOBB protein homolog; s 96.9 0.00061 2.1E-08 45.8 2.9 21 19-39 6-26 (169)
374 1vht_A Dephospho-COA kinase; s 96.9 0.00073 2.5E-08 47.1 3.4 23 17-39 4-26 (218)
375 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.0006 2E-08 50.9 3.1 22 19-40 173-194 (330)
376 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00054 1.8E-08 48.0 2.7 21 19-39 25-45 (235)
377 2f6r_A COA synthase, bifunctio 96.8 0.00082 2.8E-08 49.0 3.6 24 16-39 74-97 (281)
378 2gza_A Type IV secretion syste 96.8 0.00061 2.1E-08 51.5 2.9 22 19-40 177-198 (361)
379 3tui_C Methionine import ATP-b 96.8 0.00061 2.1E-08 51.5 2.9 23 19-41 56-78 (366)
380 1z47_A CYSA, putative ABC-tran 96.8 0.00062 2.1E-08 51.3 2.9 23 19-41 43-65 (355)
381 1zuh_A Shikimate kinase; alpha 96.8 0.00071 2.4E-08 45.1 2.9 21 19-39 9-29 (168)
382 3b9q_A Chloroplast SRP recepto 96.8 0.00058 2E-08 50.3 2.7 22 18-39 101-122 (302)
383 3r20_A Cytidylate kinase; stru 96.8 0.0007 2.4E-08 48.0 3.0 23 16-38 8-30 (233)
384 2yyz_A Sugar ABC transporter, 96.8 0.00064 2.2E-08 51.3 2.9 23 19-41 31-53 (359)
385 2ewv_A Twitching motility prot 96.8 0.00062 2.1E-08 51.7 2.9 21 19-39 138-158 (372)
386 3rlf_A Maltose/maltodextrin im 96.8 0.00065 2.2E-08 51.6 2.9 23 19-41 31-53 (381)
387 4eaq_A DTMP kinase, thymidylat 96.8 0.00094 3.2E-08 47.2 3.6 24 16-39 25-48 (229)
388 2it1_A 362AA long hypothetical 96.8 0.00066 2.3E-08 51.3 2.9 23 19-41 31-53 (362)
389 1ltq_A Polynucleotide kinase; 96.8 0.00084 2.9E-08 49.2 3.4 22 18-39 3-24 (301)
390 3gmt_A Adenylate kinase; ssgci 96.8 0.00077 2.6E-08 47.6 3.0 24 16-39 7-30 (230)
391 2pez_A Bifunctional 3'-phospho 96.8 0.00088 3E-08 45.2 3.2 22 18-39 6-27 (179)
392 1cr0_A DNA primase/helicase; R 96.8 0.00066 2.3E-08 49.7 2.8 21 19-39 37-57 (296)
393 2grj_A Dephospho-COA kinase; T 96.8 0.00091 3.1E-08 45.9 3.3 25 16-40 11-35 (192)
394 3e70_C DPA, signal recognition 96.8 0.00064 2.2E-08 50.7 2.7 23 17-39 129-151 (328)
395 1iy2_A ATP-dependent metallopr 96.8 0.00065 2.2E-08 49.3 2.7 21 20-40 76-96 (278)
396 1in4_A RUVB, holliday junction 96.8 0.00064 2.2E-08 50.7 2.6 22 19-40 53-74 (334)
397 1g29_1 MALK, maltose transport 96.8 0.00072 2.5E-08 51.3 2.9 23 19-41 31-53 (372)
398 1v43_A Sugar-binding transport 96.8 0.00075 2.6E-08 51.2 2.9 23 19-41 39-61 (372)
399 2cvh_A DNA repair and recombin 96.8 0.00074 2.5E-08 46.9 2.7 21 19-39 22-42 (220)
400 1m7g_A Adenylylsulfate kinase; 96.7 0.00075 2.6E-08 46.9 2.7 22 18-39 26-47 (211)
401 2oap_1 GSPE-2, type II secreti 96.7 0.00082 2.8E-08 53.1 3.1 23 19-41 262-284 (511)
402 3nwj_A ATSK2; P loop, shikimat 96.7 0.00072 2.5E-08 48.5 2.5 22 18-39 49-70 (250)
403 1p9r_A General secretion pathw 96.7 0.00072 2.5E-08 52.1 2.7 22 19-40 169-190 (418)
404 1n0w_A DNA repair protein RAD5 96.7 0.00081 2.8E-08 47.4 2.7 22 19-40 26-47 (243)
405 1p5z_B DCK, deoxycytidine kina 96.7 0.00077 2.6E-08 48.5 2.6 25 16-40 23-47 (263)
406 1lv7_A FTSH; alpha/beta domain 96.7 0.00082 2.8E-08 48.1 2.7 21 19-39 47-67 (257)
407 3bos_A Putative DNA replicatio 96.7 0.00099 3.4E-08 46.8 2.9 22 18-39 53-74 (242)
408 2p65_A Hypothetical protein PF 96.7 0.00069 2.4E-08 45.5 2.0 23 18-40 44-66 (187)
409 3gd7_A Fusion complex of cysti 96.7 0.0011 3.8E-08 50.6 3.2 22 19-40 49-70 (390)
410 2obl_A ESCN; ATPase, hydrolase 96.7 0.001 3.5E-08 50.0 3.0 23 19-41 73-95 (347)
411 3d31_A Sulfate/molybdate ABC t 96.6 0.00061 2.1E-08 51.2 1.7 23 19-41 28-50 (348)
412 2og2_A Putative signal recogni 96.6 0.00099 3.4E-08 50.3 2.7 22 18-39 158-179 (359)
413 2w58_A DNAI, primosome compone 96.6 0.0011 3.7E-08 45.6 2.7 22 18-39 55-76 (202)
414 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.001 3.4E-08 51.9 2.7 23 19-41 140-162 (460)
415 3kta_A Chromosome segregation 96.6 0.0013 4.6E-08 44.3 2.9 21 19-39 28-48 (182)
416 2yhs_A FTSY, cell division pro 96.6 0.0011 3.7E-08 52.0 2.7 22 18-39 294-315 (503)
417 1tue_A Replication protein E1; 96.6 0.00093 3.2E-08 46.3 2.0 21 19-39 60-80 (212)
418 1nij_A Hypothetical protein YJ 96.5 0.0011 3.9E-08 49.1 2.5 23 19-41 6-28 (318)
419 1oxx_K GLCV, glucose, ABC tran 96.5 0.00061 2.1E-08 51.3 1.0 23 19-41 33-55 (353)
420 1nlf_A Regulatory protein REPA 96.5 0.0013 4.6E-08 47.7 2.8 21 19-39 32-52 (279)
421 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0049 1.7E-07 47.8 5.9 21 18-38 68-88 (457)
422 1svm_A Large T antigen; AAA+ f 96.5 0.0014 4.7E-08 49.8 2.7 21 19-39 171-191 (377)
423 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.6E-08 45.9 2.9 21 19-39 25-45 (247)
424 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 6E-08 45.8 3.1 25 15-39 14-38 (236)
425 2dpy_A FLII, flagellum-specifi 96.5 0.0016 5.4E-08 50.5 3.0 23 19-41 159-181 (438)
426 2chg_A Replication factor C sm 96.5 0.0015 5.2E-08 45.0 2.7 21 19-39 40-60 (226)
427 1njg_A DNA polymerase III subu 96.5 0.0015 5.1E-08 45.6 2.7 21 19-39 47-67 (250)
428 3zvl_A Bifunctional polynucleo 96.5 0.0025 8.5E-08 49.1 4.1 23 17-39 258-280 (416)
429 3b9p_A CG5977-PA, isoform A; A 96.4 0.0014 4.8E-08 47.8 2.6 23 18-40 55-77 (297)
430 3t15_A Ribulose bisphosphate c 96.4 0.0016 5.5E-08 47.7 2.8 22 18-39 37-58 (293)
431 3syl_A Protein CBBX; photosynt 96.4 0.0023 7.7E-08 46.9 3.5 23 17-39 67-89 (309)
432 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0016 5.5E-08 46.5 2.6 22 18-39 40-61 (262)
433 3crm_A TRNA delta(2)-isopenten 96.4 0.0023 7.8E-08 47.5 3.5 22 18-39 6-27 (323)
434 3h4m_A Proteasome-activating n 96.4 0.0016 5.4E-08 47.2 2.6 23 18-40 52-74 (285)
435 3n70_A Transport activator; si 96.4 0.0019 6.5E-08 42.1 2.7 24 18-41 25-48 (145)
436 1c9k_A COBU, adenosylcobinamid 96.4 0.0021 7.2E-08 43.6 2.9 21 20-40 2-22 (180)
437 3cf0_A Transitional endoplasmi 96.4 0.0017 5.8E-08 47.7 2.6 22 19-40 51-72 (301)
438 1pzn_A RAD51, DNA repair and r 96.4 0.0018 6.3E-08 48.6 2.8 22 19-40 133-154 (349)
439 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0023 7.7E-08 42.0 2.9 20 19-38 25-44 (149)
440 3b60_A Lipid A export ATP-bind 96.3 0.0022 7.4E-08 51.6 3.2 22 19-40 371-392 (582)
441 1l8q_A Chromosomal replication 96.3 0.0019 6.5E-08 47.8 2.6 22 18-39 38-59 (324)
442 3ake_A Cytidylate kinase; CMP 96.3 0.0023 7.9E-08 44.0 2.9 21 19-39 4-24 (208)
443 2ga8_A Hypothetical 39.9 kDa p 96.3 0.003 1E-07 47.5 3.6 24 16-39 23-46 (359)
444 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0024 8.1E-08 50.9 3.1 23 19-41 49-71 (538)
445 4fcw_A Chaperone protein CLPB; 96.3 0.0033 1.1E-07 46.0 3.7 23 18-40 48-70 (311)
446 3co5_A Putative two-component 96.3 0.0019 6.4E-08 42.0 2.1 23 18-40 28-50 (143)
447 2px0_A Flagellar biosynthesis 96.3 0.0025 8.6E-08 46.8 3.0 108 18-132 106-253 (296)
448 2qmh_A HPR kinase/phosphorylas 96.3 0.0027 9.3E-08 43.8 2.9 23 18-40 35-57 (205)
449 3euj_A Chromosome partition pr 96.3 0.0021 7.2E-08 50.4 2.7 21 19-39 31-51 (483)
450 2qby_A CDC6 homolog 1, cell di 96.2 0.0023 7.7E-08 48.1 2.8 21 19-39 47-67 (386)
451 2yl4_A ATP-binding cassette SU 96.2 0.0022 7.7E-08 51.6 2.7 22 19-40 372-393 (595)
452 3b5x_A Lipid A export ATP-bind 96.2 0.0025 8.6E-08 51.2 2.9 22 19-40 371-392 (582)
453 1d2n_A N-ethylmaleimide-sensit 96.2 0.0039 1.3E-07 44.9 3.6 25 16-40 63-87 (272)
454 3qf4_B Uncharacterized ABC tra 96.2 0.0025 8.5E-08 51.4 2.8 22 19-40 383-404 (598)
455 1vma_A Cell division protein F 96.2 0.0026 8.9E-08 46.9 2.7 22 18-39 105-126 (306)
456 1ofh_A ATP-dependent HSL prote 96.2 0.0026 9E-08 46.4 2.7 22 18-39 51-72 (310)
457 3ozx_A RNAse L inhibitor; ATP 96.1 0.0027 9.4E-08 50.5 2.8 23 19-41 27-49 (538)
458 1sxj_E Activator 1 40 kDa subu 96.1 0.0024 8.1E-08 47.8 2.4 20 20-39 39-58 (354)
459 2ocp_A DGK, deoxyguanosine kin 96.1 0.0041 1.4E-07 44.0 3.5 23 18-40 3-25 (241)
460 3d3q_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 47.2 2.9 22 18-39 8-29 (340)
461 4a82_A Cystic fibrosis transme 96.1 0.0021 7.2E-08 51.6 2.1 22 19-40 369-390 (578)
462 1fnn_A CDC6P, cell division co 96.1 0.0028 9.5E-08 47.8 2.7 22 19-40 46-67 (389)
463 4b4t_K 26S protease regulatory 96.1 0.0027 9.2E-08 49.0 2.6 21 19-39 208-228 (428)
464 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0027 9.3E-08 47.1 2.6 23 18-40 46-68 (322)
465 3lda_A DNA repair protein RAD5 96.1 0.0032 1.1E-07 48.2 3.0 20 19-38 180-199 (400)
466 4b4t_M 26S protease regulatory 96.1 0.0029 9.8E-08 48.9 2.6 21 19-39 217-237 (434)
467 1sxj_C Activator 1 40 kDa subu 96.1 0.0029 1E-07 47.2 2.6 22 19-40 48-69 (340)
468 3foz_A TRNA delta(2)-isopenten 96.1 0.0048 1.7E-07 45.5 3.6 22 18-39 11-32 (316)
469 3qf4_A ABC transporter, ATP-bi 96.1 0.0028 9.6E-08 51.0 2.6 22 19-40 371-392 (587)
470 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0033 1.1E-07 47.5 2.9 19 20-38 26-44 (365)
471 3j16_B RLI1P; ribosome recycli 96.0 0.0033 1.1E-07 50.7 2.9 23 19-41 105-127 (608)
472 4b4t_L 26S protease subunit RP 96.0 0.0031 1.1E-07 48.8 2.6 21 19-39 217-237 (437)
473 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0037 1.3E-07 49.8 3.1 23 19-41 314-336 (538)
474 3a8t_A Adenylate isopentenyltr 96.0 0.0051 1.7E-07 45.9 3.7 23 18-40 41-63 (339)
475 2h92_A Cytidylate kinase; ross 96.0 0.0034 1.2E-07 43.6 2.6 22 18-39 4-25 (219)
476 3eie_A Vacuolar protein sortin 96.0 0.0033 1.1E-07 46.6 2.6 22 18-39 52-73 (322)
477 3ozx_A RNAse L inhibitor; ATP 96.0 0.0038 1.3E-07 49.7 3.1 23 19-41 296-318 (538)
478 3bk7_A ABC transporter ATP-bin 96.0 0.0039 1.3E-07 50.4 3.1 23 19-41 119-141 (607)
479 4edh_A DTMP kinase, thymidylat 96.0 0.0054 1.8E-07 42.8 3.4 23 17-39 6-28 (213)
480 1tf7_A KAIC; homohexamer, hexa 96.0 0.0039 1.3E-07 49.5 3.0 19 20-38 42-60 (525)
481 3lv8_A DTMP kinase, thymidylat 96.0 0.005 1.7E-07 43.7 3.2 24 16-39 26-49 (236)
482 2v1u_A Cell division control p 96.0 0.0031 1.1E-07 47.4 2.3 22 18-39 45-66 (387)
483 3v9p_A DTMP kinase, thymidylat 95.9 0.0033 1.1E-07 44.3 2.3 23 17-39 25-47 (227)
484 3uk6_A RUVB-like 2; hexameric 95.9 0.004 1.4E-07 46.8 2.8 21 19-39 72-92 (368)
485 3bk7_A ABC transporter ATP-bin 95.9 0.0044 1.5E-07 50.1 3.1 23 19-41 384-406 (607)
486 2r62_A Cell division protease 95.9 0.0016 5.6E-08 46.7 0.6 21 19-39 46-66 (268)
487 3exa_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 45.3 3.4 23 18-40 4-26 (322)
488 4b4t_J 26S protease regulatory 95.9 0.0038 1.3E-07 47.7 2.6 21 19-39 184-204 (405)
489 1sxj_D Activator 1 41 kDa subu 95.9 0.004 1.4E-07 46.4 2.7 22 19-40 60-81 (353)
490 1a7j_A Phosphoribulokinase; tr 95.9 0.0028 9.5E-08 46.4 1.7 23 17-39 5-27 (290)
491 2r8r_A Sensor protein; KDPD, P 95.9 0.0065 2.2E-07 42.7 3.5 23 16-38 5-27 (228)
492 2fna_A Conserved hypothetical 95.9 0.0044 1.5E-07 46.0 2.8 22 19-40 32-53 (357)
493 2qen_A Walker-type ATPase; unk 95.9 0.0043 1.5E-07 46.0 2.7 22 19-40 33-54 (350)
494 2qp9_X Vacuolar protein sortin 95.9 0.0043 1.5E-07 46.7 2.7 22 19-40 86-107 (355)
495 3cr8_A Sulfate adenylyltranfer 95.9 0.0029 9.8E-08 50.5 1.8 22 18-39 370-391 (552)
496 3m6a_A ATP-dependent protease 95.8 0.004 1.4E-07 49.6 2.6 22 19-40 110-131 (543)
497 3hr8_A Protein RECA; alpha and 95.8 0.0052 1.8E-07 46.3 3.0 21 19-39 63-83 (356)
498 3pxg_A Negative regulator of g 95.8 0.0046 1.6E-07 48.3 2.7 23 18-40 202-224 (468)
499 2qby_B CDC6 homolog 3, cell di 95.8 0.0049 1.7E-07 46.5 2.8 22 19-40 47-68 (384)
500 2axn_A 6-phosphofructo-2-kinas 95.8 0.0064 2.2E-07 48.2 3.5 23 16-38 34-56 (520)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.8e-39 Score=227.79 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=123.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+|.+++||+++|++|||||||+++|+++.|.. +.||++.+... +.. ..+.+.+|||+|+++|+.+++.|+++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 446678999999999999999999999999988 89999855443 344 5688999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+. .++.. .+ ++..++.|++|||++|.
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-~~----a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-RK----AKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEEEBTTTTB
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-hH----HHHhCCeeEEEeCCCCc
Confidence 9999999999999999999999987654 36899999999999976432 22221 11 12234569999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
||+++|++|++.+...
T Consensus 162 nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 162 NVKQLFRRVAAALPGM 177 (216)
T ss_dssp SHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987643
No 2
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.6e-37 Score=215.86 Aligned_cols=180 Identities=32% Similarity=0.532 Sum_probs=145.3
Q ss_pred CCCCCCccccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh
Q 030122 1 MPAKPQSSVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 78 (182)
|.+.++.+....++....||+++|++|||||||+++|+++.+.. +.+|.++....+....+.+.+|||+|+++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 1 MGSSHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp ---------------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGG
T ss_pred CCccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHH
Confidence 44455555666778888999999999999999999999998876 4899998888888899999999999999999999
Q ss_pred hhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCC-------CCCeEEEEeeCCCCCCCCCHHHHHHhhccccc-CC
Q 030122 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL-------KGAVALIFANKQDLPGALDDAAVSEALELHKI-KN 150 (182)
Q Consensus 79 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~~ 150 (182)
..+++++|++|+|||++++++|+.+..|+..++..... .++|+++|+||+|+......+++.+.+..... +.
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 99999999999999999999999999999988765322 28999999999999988777778777766554 56
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
..++++++||++|.|++++|++|.+.+.+.
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 778999999999999999999999988643
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=9.9e-37 Score=207.44 Aligned_cols=163 Identities=52% Similarity=0.948 Sum_probs=145.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
+||+++|++|+|||||++++.++.+....||.++....+.+.+..+.+||+||+++++.++..+++++|++++|||++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998887788899988888888889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
++|+.+..|+..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++|+++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999987765557899999999999987766777877777666666778999999999999999999999988
Q ss_pred hcC
Q 030122 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 765
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=5.3e-36 Score=205.02 Aligned_cols=165 Identities=58% Similarity=0.938 Sum_probs=149.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 95 (182)
..+||+++|++|+|||||++++.++.+..+.||.++....+.+....+.+||+||+++++..+..+++++|++++|+|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence 45899999999999999999999998877889999888888889999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++.++.....|+..++......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++|+++.+
T Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 86 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 99999999999998877655578999999999999887777778777776666677889999999999999999999999
Q ss_pred HHhcC
Q 030122 176 TLKSG 180 (182)
Q Consensus 176 ~i~~~ 180 (182)
.+.++
T Consensus 166 ~i~~~ 170 (171)
T 1upt_A 166 TLKSR 170 (171)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 98765
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=8.9e-37 Score=211.37 Aligned_cols=168 Identities=40% Similarity=0.736 Sum_probs=146.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
+...++|+++|++|||||||++++.+..+..+.||.++....+.+.++.+.+||++|++.++..+..+++++|++++|||
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 35678999999999999999999999877668899998888888889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999999888776555789999999999998877777777777666556677899999999999999999999
Q ss_pred HHHHhcCC
Q 030122 174 SNTLKSGG 181 (182)
Q Consensus 174 ~~~i~~~~ 181 (182)
.+.+.+++
T Consensus 173 ~~~~~~~~ 180 (181)
T 1fzq_A 173 CKNVNAKK 180 (181)
T ss_dssp HHTC----
T ss_pred HHHHHhcc
Confidence 99876553
No 6
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.1e-36 Score=210.61 Aligned_cols=168 Identities=28% Similarity=0.565 Sum_probs=147.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
....+||+++|++|+|||||+++|.++.+.. +.+|.+.....+....+.+.+||+||++++..++..+++++|++++||
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 4567899999999999999999999988876 889999888888889999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..++......+.|+++|+||+|+......+++.+.+.........++++++||++|.|++++|++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999877654578999999999999877666777777766656667788999999999999999999
Q ss_pred HHHHHhcCC
Q 030122 173 LSNTLKSGG 181 (182)
Q Consensus 173 l~~~i~~~~ 181 (182)
+.+.+.+++
T Consensus 179 l~~~~~~~~ 187 (188)
T 1zd9_A 179 LIQHSKSRR 187 (188)
T ss_dssp HHHTCC---
T ss_pred HHHHHHhhc
Confidence 999887765
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=4e-36 Score=209.97 Aligned_cols=168 Identities=46% Similarity=0.855 Sum_probs=146.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.....+||+++|++|||||||+++++++.+..+.||.++....+.+.++.+.+||+||+++++.++..+++++|++++||
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 35567999999999999999999999988877888999888888888999999999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
|++++++++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|++
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHH
Confidence 99999999999999999887655578999999999999877677788888877766677889999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.++
T Consensus 185 l~~~i~~q 192 (192)
T 2b6h_A 185 LSHELSKR 192 (192)
T ss_dssp HHHHTTTC
T ss_pred HHHHHhcC
Confidence 99988653
No 8
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=2.7e-36 Score=208.79 Aligned_cols=166 Identities=42% Similarity=0.686 Sum_probs=144.4
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+....+||+++|++|||||||+++|.++.+..+.+|.++....+.+.+..+.+||++|+++++.++..+++++|++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34456779999999999999999999999998668899998888888889999999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
|||++++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 99999999999999999988776445789999999999998876777787777666666677899999999999999999
Q ss_pred HHHHHH
Q 030122 171 DWLSNT 176 (182)
Q Consensus 171 ~~l~~~ 176 (182)
++|.+.
T Consensus 175 ~~l~~~ 180 (181)
T 2h17_A 175 EWMMSR 180 (181)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999764
No 9
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=1.2e-35 Score=206.79 Aligned_cols=167 Identities=52% Similarity=0.939 Sum_probs=150.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.||.++....+.+....+.+|||||+++++..+..+++++|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 45789999999999999999999988887788899988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 99999999999999988766567899999999999988777777887777666667788999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 180 ~~i~~~~ 186 (189)
T 2x77_A 180 ERLREQG 186 (189)
T ss_dssp HHHHHTC
T ss_pred HHHHhcc
Confidence 9887653
No 10
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=207.75 Aligned_cols=170 Identities=35% Similarity=0.617 Sum_probs=143.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC-Ccc-ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE-VVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~-~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
......+||+++|++|||||||+++|.+.. +.. +.+|.++....+.+.+..+.+||++|+++++..+..+++++|+++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 345567899999999999999999999887 344 888999888888888899999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCC--CCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+...... .+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 175 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQ 175 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHH
Confidence 999999999999999999998876544 689999999999998776677777666555445567889999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 030122 168 EGMDWLSNTLKSGG 181 (182)
Q Consensus 168 ~~~~~l~~~i~~~~ 181 (182)
++|+++.+.+.+.+
T Consensus 176 ~l~~~l~~~i~~~k 189 (190)
T 2h57_A 176 EGVDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987765
No 11
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.4e-35 Score=204.71 Aligned_cols=166 Identities=42% Similarity=0.757 Sum_probs=147.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++....+.||.++....+.+.+..+.+|||||+++++..+..+++++|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 46789999999999999999999988844488999988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+++.+..|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988765557899999999999988777777777776665566778999999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 176 ~~i~~~ 181 (186)
T 1ksh_A 176 DDISSR 181 (186)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 988754
No 12
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-35 Score=204.94 Aligned_cols=165 Identities=44% Similarity=0.707 Sum_probs=143.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||+++|.++.+..+.||.++....+.+.+..+.+||++|+++++.++..+++++|++++|+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 93 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 93 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 45689999999999999999999988887788899988888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++++++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 94 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 99999999999999988765457899999999999987666777777766555556678999999999999999999999
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+..
T Consensus 174 ~~~~~ 178 (187)
T 1zj6_A 174 SRLKI 178 (187)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 98764
No 13
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-35 Score=205.17 Aligned_cols=166 Identities=55% Similarity=0.940 Sum_probs=145.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...++|+++|++|||||||++++.++.+..+.+|.++....+.+.+..+.+||+||+++++..+..+++++|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDS 95 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999988886688999988888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+++.+..|+..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++.
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 96 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 99999999999999987765457899999999999987767777877777666666778999999999999999999999
Q ss_pred HHHhcC
Q 030122 175 NTLKSG 180 (182)
Q Consensus 175 ~~i~~~ 180 (182)
+.+.++
T Consensus 176 ~~~~~~ 181 (183)
T 1moz_A 176 DVIKEE 181 (183)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988653
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=6.5e-35 Score=203.48 Aligned_cols=162 Identities=30% Similarity=0.500 Sum_probs=140.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.+|.+.....+.+.++.+.+|||||+++++.++..+++++|++++|||+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 100 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 100 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 34579999999999999999999999887788999988888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc-------cCCCceEEEEecccCCCCHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-------IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+++.+|+.+..|+..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++|.|++
T Consensus 101 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 180 (190)
T 1m2o_B 101 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 180 (190)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHH
T ss_pred CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHH
Confidence 99999999999999988765557899999999999987666667766654432 23356789999999999999
Q ss_pred HHHHHHHHH
Q 030122 168 EGMDWLSNT 176 (182)
Q Consensus 168 ~~~~~l~~~ 176 (182)
++|+++.+.
T Consensus 181 ~l~~~l~~~ 189 (190)
T 1m2o_B 181 EAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999764
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=6.6e-35 Score=204.69 Aligned_cols=163 Identities=25% Similarity=0.477 Sum_probs=132.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+++|++|||||||++++.++.+..+.||.+.....+.+.+..+.+|||||+++++.++..+++++|++++|||+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~ 102 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDC 102 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEET
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEEC
Confidence 44679999999999999999999998887788899888888888889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccc---------c---CCCceEEEEecccC
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK---------I---KNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~ 162 (182)
+++++|+.+..|+..++......++|+++|+||+|+......+++.+.+.... . ....++++++||++
T Consensus 103 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 182 (198)
T 1f6b_A 103 ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182 (198)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCC
Confidence 99999999999999988765557899999999999987666666666554322 1 12567899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030122 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i 177 (182)
|.|++++|+++.+.+
T Consensus 183 g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 183 RQGYGEGFRWMAQYI 197 (198)
T ss_dssp TBSHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998654
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=214.56 Aligned_cols=167 Identities=50% Similarity=0.918 Sum_probs=147.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 94 (182)
...+||+|+|.+|+|||||+++|.++.+....||.+.....+...++.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 45679999999999999999999999987767899988888888999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+++.+|..+..|+..++......++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999888776667999999999999998878888888888877777889999999999999999999999
Q ss_pred HHHhcCC
Q 030122 175 NTLKSGG 181 (182)
Q Consensus 175 ~~i~~~~ 181 (182)
+.+.+++
T Consensus 323 ~~l~~~k 329 (329)
T 3o47_A 323 NQLRNQK 329 (329)
T ss_dssp HHHTC--
T ss_pred HHHHhcC
Confidence 9987653
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=5.7e-33 Score=219.11 Aligned_cols=167 Identities=45% Similarity=0.875 Sum_probs=151.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
....+||+++|.+|+|||||+++|.++.+....||.+.....+.+.++.+.+|||+|++.++.++..+++++|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 34578999999999999999999999998778899999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
++++.+|+.+..|+..++......++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887666789999999999998877778888888777777788899999999999999999999
Q ss_pred HHHHhcC
Q 030122 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~i~~~ 180 (182)
.+.+.+.
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9987654
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3e-33 Score=194.11 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=128.1
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
..++...+||+++|++|||||||+++++++.+.. +.+|.+.....+.+.+ +.+.+|||+|+++++ +++.+|+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3456788999999999999999999999998877 7777665555666644 778889999999876 6677999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.. ....++....... ...++++++||++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYG 164 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCC
Confidence 999999999999999999999998765456899999999999842 2222332222111 11357999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030122 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~~ 181 (182)
.|++++|+++++.+.+.+
T Consensus 165 ~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVALR 182 (184)
T ss_dssp BTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887543
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.4e-33 Score=193.72 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=129.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+.+ +.+.+||+||++++..++..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 356899999999999999999999888766 778887443 3344444 788999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 999999999999999999887766557899999999999965432 22222211 22345799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030122 169 GMDWLSNTLKSGG 181 (182)
Q Consensus 169 ~~~~l~~~i~~~~ 181 (182)
+|+++.+.+.+.+
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.4e-33 Score=192.15 Aligned_cols=160 Identities=12% Similarity=0.034 Sum_probs=106.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCccccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEe
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d 93 (182)
.+||+++|++|||||||++++.+.......++.+... ..+.+ ..+.+.+||++|++.++.++..+++.+|++++|||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 4799999999999999999999877666555555332 23334 55789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHH
Q 030122 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
++++.+++.+..|+..+.......++|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA----VVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH----HHTTCEEEECBGGGTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH----HHhCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999999987765678999999999999764332 11111111 123457999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.++
T Consensus 158 l~~~~~~~ 165 (166)
T 3q72_A 158 VVRQIRLR 165 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988764
No 21
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=198.86 Aligned_cols=164 Identities=12% Similarity=0.086 Sum_probs=127.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
-+....+||+++|++|||||||+++|.++.+.. +.+|.+..... +.+ ..+.+.+||+||++++..++..+++.+|+
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345578999999999999999999999998877 77777744322 222 66889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... ..+.. .+. ...+++++++||++|.|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KLA----ESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECCTTCHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HHH----HHhCCeEEEEeCCCCCC
Confidence 999999999999999999999988775557899999999999875432 22221 111 12235799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=192.81 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=126.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|.+..+.. +.+|++ +....+.+.+ +.+.+||++|+++++.++..+++++|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 345567899999999999999999999988876 778877 4445556644 79999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHHHHHHhhcccccCCCce-EEEEecccCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDS 177 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCC
Confidence 9999999999999999999998886653 367999999999999753 2233332222 12234 7999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 178 ~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 178 SNVEEAFLRVATELIMR 194 (201)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988754
No 23
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=190.40 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=134.1
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~ 84 (182)
.+......+||+++|++|||||||+++|.+..+.. +.+|.+... ..+.+ ..+.+.+||+||++++..++..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 33445567999999999999999999999998876 778877444 44444 45789999999999999999999999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+|++++|||++++.++..+..|+..+.......++|+++|+||+|+.... ..++..... ....++++++||++|
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 162 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTC 162 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCC
Confidence 99999999999999999999999988776545689999999999995432 222222211 223457999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TTHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988754
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.1e-32 Score=189.27 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=131.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.. ..+.+.+||+||++.+..++..+++++|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445668999999999999999999999888776 777777433 33344 34567789999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEeccc-CCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAI-KGE 164 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~ 164 (182)
+++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++..... +..+++++++||+ +|.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCC
Confidence 999999999999999999999887755557899999999999976332 22222211 1112459999999 999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 168 ~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999988753
No 25
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=192.79 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=127.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|||||||++++.++.+.. +.++.+... ..+.+ ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999988776 778887443 44444 44689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-----CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.. .+ ....+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGE-KL----AEEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHH-HH----HHHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHH-HH----HHHcCCEEEEEeCCCCCC
Confidence 999999999999999988887653 3689999999999986531 112221 11 112345799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 26
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.3e-32 Score=188.37 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=130.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
.......+||+++|++|+|||||+++|+++.+.. +.++.+... ..+.. ..+.+.+||+||++++...+..++..+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 3345567899999999999999999999998866 677777444 34444 457899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... +..+++++++||++|
T Consensus 96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKEN 169 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCC
Confidence 99999999999999999999988876542 35899999999999975322 22222211 112347999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++.+.+.+
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.4e-33 Score=192.57 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=133.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.++...+||+++|++|||||||+++|.+..+.. +.+|.+.... .+.+. .+.+.+||+||++++..++..+++.+|+
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 345667999999999999999999999988766 7788774433 34444 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..++......++|+++|+||+|+.+... .++.. .+. ...+++++++||++|.|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AFG----ASHHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HHH----HHcCCeEEEecCCCCCC
Confidence 999999999999999999999886655557899999999999975332 22222 221 22346799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 159 v~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
No 28
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.5e-33 Score=195.06 Aligned_cols=165 Identities=22% Similarity=0.290 Sum_probs=126.6
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEeC--CEEEEEEECCCCCCCh-hhhhhhCC
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQYN--NIKFQVWDLGGQTSIR-PYWRCYFP 83 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~i~d~~g~~~~~-~~~~~~~~ 83 (182)
...+....+||+++|++|||||||+++|+++.+.. ..++.+. ....+.+. .+.+.+||+||++++. .++..+++
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence 44556678999999999999999999999988876 7777774 44455554 4789999999999888 78899999
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEeccc
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+. ...+++++++||+
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~ 167 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KFA----DTHSMPLFETSAK 167 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCCEEECCSS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HHH----HHcCCEEEEEeCC
Confidence 9999999999999999999999999887765457899999999999965322 22222 211 1223469999999
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 030122 162 KG---EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~---~~i~~~~~~l~~~i~~ 179 (182)
+| .|++++|++|.+.+.+
T Consensus 168 ~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SGGGGSCHHHHHHHHC-----
T ss_pred cCCcccCHHHHHHHHHHHHhh
Confidence 99 9999999999887754
No 29
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.7e-32 Score=190.19 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=130.7
Q ss_pred cccCCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhC
Q 030122 8 SVTSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 8 ~~~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~ 82 (182)
+.........+||+++|++|||||||+++|.+..+.. ..+|.+ +....+.+. .+.+.+||+||+++++.++..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 3344556778999999999999999999999988876 666666 444455554 47899999999999999999999
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 165 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSA 165 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeC
Confidence 99999999999999999999999988886643 3689999999999996532 222222211 122457999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++|+++.+.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=6e-32 Score=185.87 Aligned_cols=164 Identities=13% Similarity=0.204 Sum_probs=129.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
+....++|+++|++|+|||||++++.+..+.. +.+|.+... ..+.+.+ +.+.+||+||+++++..+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34567899999999999999999999988776 778887544 4444543 689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+... ...++...... ....++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDA 158 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCC
Confidence 9999999999999999988888765432 267899999999999732 22333332221 123456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 159 ~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 159 TNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=187.42 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|.++.+.. +.++.+.. ...+.+.+ +.+.+||+||++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 344567899999999999999999999988776 77777744 44555544 78999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... ++..... ...+++++++||++|.
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNAT 164 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 9999999999999999999988886553 358999999999999765332 2221111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 165 gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKR 180 (196)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 32
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.9e-32 Score=189.75 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=130.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|||||||+++|+++.+.. +.+|++.+. ..+.+. .+.+.+||++|+++++.++..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 445667899999999999999999999988876 778887444 445554 368999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCC
Confidence 9999999999999999999988876543 35799999999999974322 22222111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 175 gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 175 NVEKLFLDLACRLIS 189 (201)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 33
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=192.32 Aligned_cols=162 Identities=16% Similarity=0.188 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|++..+.. ..+|.+.... .+.+ ..+.+.+||+||++++..++..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 445667999999999999999999999988876 7778775443 3333 4578999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDST 173 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCC
Confidence 9999999999999999999988886543 3689999999999997532 222222211 2234579999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 174 gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 174 NVELAFETVLKEIFA 188 (193)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 34
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.9e-32 Score=185.44 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=127.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.....+||+++|++|||||||+++|.+..+.. +.++.+ +....+.+.+ +.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 44567899999999999999999999988776 677777 4444555555 789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... .++..... ...+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVN 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCC
Confidence 999999999999999999998887653 6899999999999875432 22221111 11234599999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 158 i~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 158 VEEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.9e-32 Score=193.45 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=127.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|++|||||||+++|+++.+.. +.+|.+.... .+.+ ..+.+.+||++|++++..++..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345567999999999999999999999998877 7888885543 2233 55889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHH-HHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCCCc
Q 030122 88 VIYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 152 (182)
+|+|||++++.+|+. +..|+..+.... .+.|+++|+||+|+.++ ...++.... .+..+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~ 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-----AKQLG 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-----HHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-----HHHcC
Confidence 999999999999998 678888876653 68999999999999752 222222111 12223
Q ss_pred e-EEEEecccCCCC-HHHHHHHHHHHHhcC
Q 030122 153 W-AIFKTCAIKGEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~-~~~~~Sa~~~~~-i~~~~~~l~~~i~~~ 180 (182)
+ +++++||++|.| ++++|+++++.+.+.
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 4 699999999998 999999999988754
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.3e-32 Score=189.79 Aligned_cols=163 Identities=18% Similarity=0.177 Sum_probs=130.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+...+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+.+ ..+.+.+||+||+++++..+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 345567899999999999999999999988877 66777743 444445 3578999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTAT 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCC
Confidence 9999999999999999999998887653 35899999999999975432 23332221 1234579999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 161 gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 161 NVKEIFYEIARRLPRV 176 (181)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=189.48 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=116.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC--ChhhhhhhCCCCCEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS--IRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~--~~~~~~~~~~~~~~~i 89 (182)
..+||+++|++|+|||||+++|.+..+....++.+ +....+.+. .+.+.+||++|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999988776445555 334455553 46889999999988 5677788899999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++... +. ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-CA----VVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-HH----HHHTSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-HH----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999999998887764456899999999999976432 222211 11 1123579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (175)
T 2nzj_A 158 ELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.9e-32 Score=185.63 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=128.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.+||+++|++|||||||++++.++.+.. +.+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 35899999999999999999999988776 7777774433 2333 467899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++...... . ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-Q---WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H---TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-H---ccCCcEEEecCCCCCCHHHH
Confidence 99999999999999988887754456899999999999975432 222222111 1 12467999999999999999
Q ss_pred HHHHHHHHh
Q 030122 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~l~~~i~ 178 (182)
|+++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=193.96 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=131.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.++...++|+++|++|||||||+++|.+..+.. +.+|.+.. ...+.+. .+.+.+||+||++++..++..++..+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345567899999999999999999999888766 77777733 3444453 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCC
Confidence 99999999999999999999998876545689999999999997532 233332222 12235699999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 164 i~~l~~~l~~~i~~ 177 (206)
T 2bov_A 164 VDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-31 Score=185.63 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=127.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
++...+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||++|+++++.++..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 44567899999999999999999999988766 777877333 344443 48899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHHHHHhhcccccCCCce
Q 030122 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (182)
++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.. ..++.... .+..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-----AKEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-----HHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-----HHHcCC
Confidence 9999999999999987 6877776543 589999999999997631 11111111 111122
Q ss_pred -EEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 154 -AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 -~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++++||++|.|++++|+++.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 59999999999999999999998763
No 41
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9.7e-33 Score=187.94 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=127.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++.+..+.. +.+|.+... ..+.+ ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 35899999999999999999999988766 677776433 33444 346899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999999999988776555689999999999996532 233332222 122357999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=9.5e-33 Score=190.05 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=129.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC---EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
...+||+++|++|||||||+++|.++.+.. +.||.+ +....+.+.+ +.+.+||+||++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 456899999999999999999999988766 677877 5556666644 8999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC-CCCCe-EEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAV-ALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|||++++.+++.+..|+..+..... ..+.| +++|+||+|+.+.. ..++..... +..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 999999999999999888887765321 12444 89999999997532 222222211 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.+.+
T Consensus 159 gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIK 175 (178)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999887653
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-31 Score=183.78 Aligned_cols=162 Identities=17% Similarity=0.250 Sum_probs=122.6
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCceeeEE--EEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.....+||+++|++|+|||||+++|.+..+.. +.+|.+..... +.+. .+.+.+||+||+++++.++..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 34567899999999999999999999988853 67777755443 3443 468999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+... .++..... +..+++++++||++|.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGL 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCC
Confidence 99999999999999999999888766532 6899999999999976432 22222111 1123469999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRR 175 (180)
T ss_dssp THHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.5e-32 Score=187.83 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=131.2
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|++|+|||||+++|.+..+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345567999999999999999999999988766 677776433 334443 3689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRAN 167 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCC
Confidence 99999999999999999999988776655689999999999986532 233332222 22345799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+.++
T Consensus 168 i~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 168 VDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=191.32 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=125.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....+||+++|++|+|||||+++|.+..+.. +.+|.+.+ ...+.+. .+.+.+||++|++++..++..+++++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 445667899999999999999999999988766 67777744 4445554 478999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++.. .+... ...++++++||++|.
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~~~~---~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGE-KFAQQ---ITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHT---STTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HHHHh---cCCCeEEEEeCCCCC
Confidence 999999999999999998887776544 335899999999999975332 22222 22111 135679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 46
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.4e-32 Score=189.22 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=130.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.....+||+++|++|||||||+++|.+..+.. +.+|.+.. ...+.+ ..+.+.+||+||++++...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 35567999999999999999999999988766 67777743 444444 34789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999999999999988876543 3589999999999996532 223332222 12345799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 47
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.1e-33 Score=191.98 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.++.+.. +.+|.+.+. ..+.+.+ +.+.+||+||++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 456899999999999999999999888765 677777443 4555544 88999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... +..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988886642 35799999999999976432 23322211 1223579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9e-34 Score=197.69 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|||||||+++|.++.+.. +.++.+ +....+.. ..+.+.+||++|++.+..++..+++++|
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM 97 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence 445567899999999999999999999988766 666666 44444444 6789999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 98 GFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENI 171 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCC
Confidence 9999999999999999999988886643 46899999999999865322 22221111 1223569999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.++.
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKM 188 (191)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999887643
No 49
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.5e-31 Score=186.81 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=127.8
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
.....+||+++|++|+|||||+++|.++.+.. +.+|.+..... +.+ ..+.+.+||+||++++..++..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 45567999999999999999999999998876 78888744433 333 446779999999999999999999999999
Q ss_pred EEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceE-EEEecccC
Q 030122 89 IYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWA-IFKTCAIK 162 (182)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 162 (182)
++|||++++.+++.+ ..|+..+... ..++|+++|+||+|+.+. ...++...... ..++. ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCC
Confidence 999999999999997 5666666543 368999999999999753 22233222211 11223 99999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030122 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~~ 181 (182)
|.|++++|+++.+.+.+++
T Consensus 172 ~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999988764
No 50
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-32 Score=188.13 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=129.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
+...+||+++|++|+|||||+++|+++.+.. +.++.+... ..+.+ ..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3457899999999999999999999988877 677777444 34444 367899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..... ....++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence 99999999999999999988886653 3689999999999986532 223322221 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 51
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=192.70 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=125.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeC--CEEEEEEECCCCCCChh-hhhhhCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTSIRP-YWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~~~~-~~~~~~~~~~ 86 (182)
+....+||+++|++|||||||+++|.+..... ..++.+ .....+.+. .+.+.+||++|++++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34567899999999999999999997544322 333333 444555553 46889999999998765 7888889999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++... +. +..+++++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCCC
Confidence 9999999999999999999999887654445899999999999975432 223221 11 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++++.+.+.+
T Consensus 174 ~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987654
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=7.3e-32 Score=187.19 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=125.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|||||||+++|.++.+.. +.+|.+ .....+.+. .+.+.+||+||++.+..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 56899999999999999999999888766 666665 333344443 45688899999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999888766567899999999999975432222222221 11124599999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 159 ~l~~~~~~ 166 (189)
T 4dsu_A 159 TLVREIRK 166 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 53
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=8.3e-33 Score=188.85 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=117.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEe--CCEEEEEEECCCCCCChh-hhhhhCCCCCEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 90 (182)
.+||+++|++|||||||+++|.+..+.. ..++.......+.+ ..+.+.+||++|++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999999766554 33333455555555 347889999999998876 77778889999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... +..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 99999999999999999998876655689999999999997432 222222111 22345799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030122 169 GMDWLSNTLKSGG 181 (182)
Q Consensus 169 ~~~~l~~~i~~~~ 181 (182)
+|+++.+.+..++
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987653
No 54
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3e-32 Score=188.90 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=129.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.+..+.. +.++.+.. ...+.+.+ +.+.+||+||++++...+..+++++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 3567899999999999999999999988876 77777744 34445544 7899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCH
Confidence 99999999999999999988776543 3689999999999996432 222222211 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|+++.+.+.+
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.1e-31 Score=185.56 Aligned_cols=162 Identities=16% Similarity=0.228 Sum_probs=132.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE---EEEeC-----------CEEEEEEECCCCCCChhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~i~d~~g~~~~~~~ 77 (182)
+....+||+++|++|+|||||+++|.++.+.. +.+|.+.... .+.+. .+.+.+||+||++++...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 45567999999999999999999999988876 7888886554 33333 479999999999999999
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEE
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+..+++++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++...... ..++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCE
Confidence 999999999999999999999999999999988776555689999999999997532 2233222211 112459
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++||++|.|++++|++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 56
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=7e-32 Score=188.48 Aligned_cols=161 Identities=16% Similarity=0.230 Sum_probs=125.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccc-----------cCCCceeeEEEE---e--CCEEEEEEECCCCCCCh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVST-----------IPTIGFNVETVQ---Y--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~~~~---~--~~~~~~i~d~~g~~~~~ 75 (182)
......+||+++|++|||||||++.+.+.....+ .+|.+.+..... + ..+.+.+|||||+++++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4456789999999999999999976665433323 234443333221 1 45789999999999999
Q ss_pred hhhhhhCCCCCEEEEEEeCC------CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC
Q 030122 76 PYWRCYFPNTEAVIYVVDSS------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
.++..+++++|++|+|||++ +.++++.+..|+..+.. ...++|+++|+||+|+.+....+++.+...
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~----- 161 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD----- 161 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH-----
Confidence 99999999999999999999 55778888888887732 347899999999999988766666655443
Q ss_pred CCce-EEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 150 NRQW-AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 150 ~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..++ +++++||++|.|++++|+++.+.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 2334 69999999999999999999998864
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-31 Score=186.07 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=130.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
......+||+++|++|+|||||+++|++..+.. +.++.+..... +.+ ....+.+||+||++++...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 344567999999999999999999999998765 78888855443 333 5679999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.
T Consensus 98 ~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAI 171 (192)
T ss_dssp EEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCc
Confidence 9999999999999999999988886643 3589999999999997422 233333222 2345679999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+.+
T Consensus 172 gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 172 NIEELFQGISRQIPP 186 (192)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.5e-32 Score=188.35 Aligned_cols=163 Identities=15% Similarity=0.162 Sum_probs=117.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC---CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
....++|+++|++|||||||++++.+..+.. +.+|.+.. ...+.+. ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4457899999999999999999999988766 77777643 3444443 5789999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC---CHHHHHHhhcccccCCCceEEEEeccc
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL---DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.... ..++...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999999999888765432 2678999999999995432 2222222211 1234569999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|+++.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987653
No 59
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.9e-31 Score=182.11 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=122.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||++++.+..+.. ..+|.+.... .+.+ ..+.+.+||+||++++..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 456899999999999999999999988876 7788775443 4444 4468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 9999999999999999988875532 2579999999999997532 223322221 2234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=5.7e-31 Score=185.47 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=129.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||+++|.+..+.. +.+|.+.. ...+.+. .+.+.+||+||+++++..+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 457899999999999999999999988876 77777744 3455553 468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988886543 35799999999999976432 22222211 1223569999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 61
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.6e-33 Score=192.23 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=123.5
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
.+...+||+++|++|||||||+++|+++.+.. +.+|++... ..+.+ ..+.+.+||++|+++++.+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35667999999999999999999999988776 788888443 23344 4578999999999998875 5688999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecc-cCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA-IKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 163 (182)
++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.... ..++..+.. +..+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence 999999999999999999988876421 2589999999999996532 222222211 112357999999 899
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++|+++++.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998865
No 62
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=1.6e-32 Score=195.53 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=133.9
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CCEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
...+...+||+++|.+|||||||+++|+.+.+.. +.+|.+.......+ ..+.+.+|||+|++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 3556678999999999999999999988777666 78888855554443 557899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+.+..... ..........++++++||++|.|
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999999999999999887764 589999999999997643211 11122233456799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030122 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 i~~~~~~l~~~i~~~ 180 (182)
++++|+++.+.+...
T Consensus 162 i~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 162 FEKPFLWLARKLIGD 176 (221)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988754
No 63
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-32 Score=193.04 Aligned_cols=161 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+ +....+.+.+ +.+.+||+||++++..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4567899999999999999999999998876 677777 4444555544 7999999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.... ..++..... ....++++++||++|.|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999999998886543 3579999999999997532 222222211 223467999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.++
T Consensus 164 ~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 164 DKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=1.6e-31 Score=181.77 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=128.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc-eeeEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
.++||+++|++|+|||||++++.++.+.. +.+|.+ .....+.+. ...+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 35899999999999999999999888776 667766 333444553 45699999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHHH
Confidence 99999999999999998887765556899999999999865322 22222111 112345999999999999999
Q ss_pred HHHHHHHHhc
Q 030122 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~l~~~i~~ 179 (182)
|+++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 65
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=6.1e-32 Score=184.52 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=129.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|+|||||+++|.+..+.. +.++.+... ..+.+ ....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 356899999999999999999999998766 778877443 34444 3478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++... +. ....++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD-YA----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHH-HH----HHcCCEEEEEeCCCCcCHH
Confidence 999999999999999998888664 346899999999999975332 222221 11 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 66
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=1.3e-31 Score=182.84 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=123.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+.+. .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999988866 67777743 4445543 4789999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... +..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988886643 3589999999999995422 222222111 112346999999999999999
Q ss_pred HHHHHHHHhcC
Q 030122 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~l~~~i~~~ 180 (182)
|+++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 67
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=1.7e-31 Score=188.03 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=128.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE--EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+.+... +.+ ..+.+.+||+||++.+..++..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4457899999999999999999999988776 77887755444 333 347899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccC---CCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.... ..++...... ....++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999999999988887765432 2478999999999997432 2222222211 1234569999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=5.9e-31 Score=184.92 Aligned_cols=159 Identities=15% Similarity=0.194 Sum_probs=128.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.+..+.. +.+|.+... ..+.. ..+.+.+||+||++++..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 456899999999999999999999998876 778877444 34444 3578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence 9999999999999999988876543 35799999999999976432 22222111 1123469999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 69
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=1.1e-31 Score=182.93 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=129.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
...+||+++|++|||||||+++|.++.+.. +.+|.+.+ ...+.+. .+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999988876 77777744 4444443 568999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999999999999988887654 689999999999987532 233332221 1223579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030122 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~~~~~l~~~i~~ 179 (182)
++|+++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 70
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=6.3e-32 Score=191.78 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=130.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeC------------CEEEEEEECCCCCCChh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~i~d~~g~~~~~~ 76 (182)
......+||+++|++|||||||+++|++..+.. +.+|.+... ..+.+. .+.+.+||++|++++..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 345667999999999999999999999988866 677777443 344442 57899999999999999
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 154 (182)
.+..+++.+|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+... .++..... +..+++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~ 174 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIP 174 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCc
Confidence 99999999999999999999999999999988876654446899999999999975322 22222211 112346
Q ss_pred EEEecccCCCCHHHHHHHHHHHHhc
Q 030122 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++++||++|.|++++|+++.+.+.+
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=1.4e-32 Score=189.23 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=128.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
..+..++||+++|++|+|||||+++|+++.+.. +.++.+.+. ..+.+.+ +.+.+||+||++++...+..++.++|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 345567999999999999999999999888776 777777443 4444543 68999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCC
Confidence 9999999999999999999988886543 35899999999999865332 22222211 1223579999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030122 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~ 180 (182)
|++++|+++.+.+.++
T Consensus 163 ~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 163 NVKQLFRRVAAALPGM 178 (179)
T ss_dssp SHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999877553
No 72
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.4e-32 Score=193.11 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=121.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.++.+.. +.+|.+ +....+.+.+ +.+.+||++|++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4567899999999999999999999988876 677776 4444555544 7999999999998888899999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+..... ..+..... ...+++++++||++|.|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999999999988876543 26899999999999964322 22222211 223467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030122 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~~~~~l~~~i~~ 179 (182)
+++|+++.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=5.8e-32 Score=192.13 Aligned_cols=165 Identities=17% Similarity=0.147 Sum_probs=130.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEe----CC-EEEEEEECCCCCCChhhhhhhCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQY----NN-IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~-~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
......+||+++|++|||||||+++|+++.+.. +.+|.+.......+ .. +.+.+||++|++.+..++..++.++
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 344567999999999999999999999888777 78888866555544 12 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... .+.... ......++++++||++|.
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVME----VLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHH----HTTTCCCEEEEEBTTTTB
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH----HHHHcCCcEEEEecCCCC
Confidence 99999999999999999999988876553 346899999999999754221 111111 223455679999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030122 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~~~ 181 (182)
|++++|+++.+.+.+..
T Consensus 161 gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTTHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999987654
No 74
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.9e-32 Score=191.22 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=121.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC--CccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC-ChhhhhhhCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE--VVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPN 84 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~-~~~~~~~~~~~ 84 (182)
......+||+++|++|||||||+++|++.. +....++++ +....+.+. .+.+.+|||+|++. ++.+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 344567899999999999999999999644 333333444 344555554 45678999999887 55677788899
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+... .++. ..+. ...++++++|||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~~a----~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RACA----VVFDCKFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHHH----HHHTCEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HHHH----HHcCCEEEEEeCCC
Confidence 999999999999999999999988876544346899999999999964322 2221 1111 12235699999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030122 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~ 179 (182)
|.|++++|+++++.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998754
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.1e-31 Score=188.57 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=126.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|.+|||||||++++.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..+++++|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 345667899999999999999999999988876 777777433 334443 4689999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEE
Q 030122 88 VIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~ 156 (182)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.....+..... ........+. +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 9999999999999998 56666665432 589999999999997642111111100 0011111223 799
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.98 E-value=9.3e-31 Score=183.62 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=127.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE--EEEeCC--------------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE--TVQYNN-------------------------------- 60 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~-------------------------------- 60 (182)
..+||+++|++|+|||||+++|++..+.. +.+|.+.... .+.+.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 45899999999999999999999998876 7788774443 344433
Q ss_pred -------EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC-
Q 030122 61 -------IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG- 132 (182)
Q Consensus 61 -------~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~- 132 (182)
..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|...
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~ 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKF 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccc
Confidence 889999999999999999999999999999999999999999999988887653 499999999999432
Q ss_pred CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
....+++..... ..+++++++||++|.|++++|+++.+.+.++
T Consensus 163 ~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 163 QVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 222334333221 2345799999999999999999999987653
No 77
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=186.18 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=119.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|||||||+++|.++.+.. +.+|.+... ..+.+.+ +.+.+||++|+++++.++..++.++|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 346678999999999999999999999988766 777877333 3344443 678899999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC--------------CHHHHHHhhcccccCCCc
Q 030122 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 152 (182)
+++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.... ..++..... ...+
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 167 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIK 167 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcC
Confidence 99999999999999997 6877776543 589999999999987521 111111111 1112
Q ss_pred e-EEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 153 W-AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~-~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+ +++++||++|.|++++|+++.+.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 2 699999999999999999999987643
No 78
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=9.6e-31 Score=180.15 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=119.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
...+||+++|++|||||||+++|.++.+.++.||.+.. ...+.+. .+.+.+||++|+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 34689999999999999999999999888777887733 3445553 47889999999987 4567789999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhc--cCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
||++++.+++.+..|+..+... ....++|+++|+||+|+.. ....++...... ....++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 9999999999999876554332 2236899999999999842 122333322111 01246799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=187.54 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=119.5
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce--eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....+||+++|++|+|||||+++|+++.+.. +.+|.+. ....+.+ ..+.+.+||+||++++..++..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 345567999999999999999999999988766 6777773 3445555 3478999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC------C--CCHHHHHHhhcccccCCCceEEEEe
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG------A--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+ . ...++.. .+ ....+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KL----AMTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HH----HHHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHH-HH----HHHcCCeEEEe
Confidence 9999999999999999999988775432 35789999999999852 1 1122211 11 11234579999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.++
T Consensus 177 SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC-
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999988754
No 80
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=9.4e-32 Score=190.74 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=108.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++|+++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++..++..++.++|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3467899999999999999999999988766 66777633 233444 3468999999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~ 158 (182)
+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.......+..... .....+..++ +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999987 6777775543 679999999999997643221111000 0111112233 79999
Q ss_pred cccCCCCHHHHHHHHHHHHhcCC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
||++|.|++++|+++.+.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999887643
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.2e-30 Score=181.50 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=118.8
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
.+....+||+++|.+|||||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++...+..++..+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345567899999999999999999999888766 666666333 344443 4679999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+.+. ...++..+... ..+++++++||++|.|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 9999999999999999999888766544458999999999998752 22333322211 12345999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=5.7e-31 Score=178.69 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=127.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
.+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+.. ..+.+.+||+||++++...+..++..+|++++||
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999888766 66666633 333444 3467899999999999999999999999999999
Q ss_pred eCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHH
Q 030122 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|++++|+
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999999999998888766544589999999999987632 2222222211 1234599999999999999999
Q ss_pred HHHHHHhc
Q 030122 172 WLSNTLKS 179 (182)
Q Consensus 172 ~l~~~i~~ 179 (182)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
No 83
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=4.3e-31 Score=183.08 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=125.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+...+||+++|++|||||||+++|.++.+.. +.||.+... ..+.+ ..+.+.+||+||++.+..++..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4457899999999999999999999988876 778877433 23333 4578999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCC-Cce
Q 030122 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKN-RQW 153 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 153 (182)
+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .+. ..+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~ 156 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAA 156 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCc
Confidence 99999999999998 57777775543 58999999999999742 112221111 111 124
Q ss_pred EEEEeccc-CCCCHHHHHHHHHHHHhc
Q 030122 154 AIFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~Sa~-~~~~i~~~~~~l~~~i~~ 179 (182)
+++++||+ +|.|++++|+++.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 79999999 689999999999998875
No 84
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.5e-31 Score=186.69 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=126.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
.+....++|+++|++|+|||||+++|++..+.. ..+|.+ +....+.+.+ +.+.+||+||++.+...+..++..+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 345567899999999999999999999988766 677777 4445555555 78999999999999999999999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDN 168 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 9999999999999999999988876643 2579999999999995322 222222111 11124599999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030122 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 i~~~~~~l~~~i~~ 179 (182)
++++|+++.+.+.+
T Consensus 169 i~~l~~~l~~~~~~ 182 (213)
T 3cph_A 169 VNEIFFTLAKLIQE 182 (213)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 85
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=4e-31 Score=186.39 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=125.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCE
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 87 (182)
......+||+++|++|||||||+++|.+..+.. +.+|.+.... .+.+ ..+.+.+||++|++++..++..+++++|+
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 345567899999999999999999999998876 7788774442 3333 45889999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCC--------------CCHHHHHHhhcccccCC-C
Q 030122 88 VIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKN-R 151 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~-~ 151 (182)
+|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .+. .
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~ 175 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIG 175 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcC
Confidence 9999999999999998 67877775543 58999999999999742 111211111 111 1
Q ss_pred ceEEEEeccc-CCCCHHHHHHHHHHHHhc
Q 030122 152 QWAIFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~Sa~-~~~~i~~~~~~l~~~i~~ 179 (182)
.++++++||+ +|.|++++|+++.+.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 2469999999 689999999999998764
No 86
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-32 Score=190.09 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=128.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
+...+||+++|++|||||||+++|+++.+.. +.+|.+.... .+.+ ..+.+.+||+||++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4567899999999999999999999988876 7778774443 3444 357899999999998 778889999999999
Q ss_pred EEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCC-CH
Q 030122 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE-GL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i 166 (182)
+|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCH
Confidence 999999999999999998888775545689999999999997532 222222111 1124579999999999 99
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+.++
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 87
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=5.4e-31 Score=186.34 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=124.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.+ ..+.+.+||+||+++++.++..+++++|++|+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 56899999999999999999999988766 778887333 33444 447999999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC----------CHHHHHHhhcccccCCCc-eEEEEec
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL----------DDAAVSEALELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~S 159 (182)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+ .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~S 160 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIECS 160 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEcc
Confidence 9999999999987 6877776543 589999999999986532 111111111 1112 3699999
Q ss_pred ccCCCCHHHHHHHHHHHHhcC
Q 030122 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~~~ 180 (182)
|++|.|++++|+++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999988754
No 88
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-32 Score=185.51 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=125.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||++++.++.+.. +.+|.+..... +.. ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 36899999999999999999999988766 77777744333 333 346899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
||++++.+++.+..|+..+.... ...+.|+++|+||+|+.+... ..+.. .+. ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-ALA----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-HHH----HHhCCeEEEecCCCCcCHHH
Confidence 99999999998888887776542 225799999999999865432 22221 111 12235799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-30 Score=183.02 Aligned_cols=165 Identities=14% Similarity=0.152 Sum_probs=122.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee-EEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++|.++.+.. +.+|.+... ..+.+. .+.+.+||+||++++..++..++.++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3457899999999999999999999988876 667777333 334443 478999999999999999999999999999
Q ss_pred EEEeCCCcchHHHH-HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---------cccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---------HKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 158 (182)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999988 56766665532 58999999999999754221111111100 01111222 79999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 90
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2.9e-31 Score=183.69 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=125.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++..++..+++.+|++++|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 46899999999999999999999888766 67777633 233444 456788999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEecc
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~Sa 160 (182)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.....+..... .....+..+. +++++||
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 84 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 9999999999987 6777776543 489999999999987532111111000 0001112233 7999999
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 030122 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~~ 180 (182)
++|.|++++|+++.+.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCccCHHHHHHHHHHHHhcc
Confidence 99999999999999988654
No 91
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.4e-31 Score=187.37 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=117.0
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeE--EEE---eCCEEEEEEECCCCCCChhhh---hhh
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVE--TVQ---YNNIKFQVWDLGGQTSIRPYW---RCY 81 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~---~~~~~~~i~d~~g~~~~~~~~---~~~ 81 (182)
...++...+||+++|++|||||||++++.+........+.++... ... ...+.+.+||++|+++|.... ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 445677889999999999999999998877533322222222222 222 256899999999999987765 889
Q ss_pred CCCCCEEEEEEeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHH----HhhcccccCCC
Q 030122 82 FPNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVS----EALELHKIKNR 151 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~----~~~~~~~~~~~ 151 (182)
++++|++|+|||++++ ++++.+..|+..+.... .++|+++|+||+|+.+... ..++. ..+........
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999997 67777777877765432 6899999999999875311 11222 22222222256
Q ss_pred ceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 152 QWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
.++++++||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78899999999 99999999999875
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=2.3e-31 Score=187.39 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCc--eeeEEEEeC----CEEEEEEECCCCCCChhhhhhhCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~ 85 (182)
...++|+++|++|||||||+++|.+. .+.. +.+|.+ +....+.+. .+.+.+||+||++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 6665 778877 455566664 67999999999999999999999999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccC--CCCCeEEEEeeCCCCCC-CC--CHHHHHHhhcccccCCCceEEEEecc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPG-AL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~i~v~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|++|+|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .. ..++..... +..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999999999988876543 25899999999999976 22 223332221 122367999999
Q ss_pred cC-CCCHHHHHHHHHHHHhc
Q 030122 161 IK-GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~~i~~~~~~l~~~i~~ 179 (182)
++ |.|++++|+++.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.7e-31 Score=184.68 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=126.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEE-EEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...++|+++|++|||||||+++|.++.+.. +.+|.+..... +.. ..+.+.+||+||++++..++..+++.+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 346899999999999999999999988876 67777744333 333 35689999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCC-CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VA----QEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HH----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HH----HHhCCeEEEEecCCCCCHHH
Confidence 9999999999988888776655321 2578999999999997532 2222221 11 12235799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030122 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 ~~~~l~~~i~~~ 180 (182)
+|+++.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 94
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=4.9e-31 Score=185.76 Aligned_cols=162 Identities=13% Similarity=0.145 Sum_probs=123.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCce-eeEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|||||||+++++++.+.. +.+|.+. ....+.+ ..+.+.+||+||++++..++..+++++|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4567899999999999999999999888876 6677662 2333344 4567779999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcc---------cccCC-CceEEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---------HKIKN-RQWAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~ 158 (182)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.....+....... ...+. ...+++++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 999999999999997 6777765543 68999999999999764322111111100 11111 22469999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998864
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.7e-30 Score=184.07 Aligned_cols=163 Identities=20% Similarity=0.223 Sum_probs=121.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeC---CEEEEEEECCCCCCChh-hhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||+++|+++.+....++.+.....+.+. .+.+.+|||||+++++. ++..+++++|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 346899999999999999999999998877445555555556664 78999999999999988 88889999999999
Q ss_pred EEeCCCcc-hHHHHHHHHHHHHhc--cCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc-----------------------
Q 030122 91 VVDSSDTD-RIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALE----------------------- 144 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~----------------------- 144 (182)
|||+++.. ++.....++..++.. ....++|+++|+||+|+......+.+.+.+.
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99999854 466666666655433 1235799999999999987655433322211
Q ss_pred ccccC---------C--CceEEEEecccCC------CCHHHHHHHHHHHH
Q 030122 145 LHKIK---------N--RQWAIFKTCAIKG------EGLFEGMDWLSNTL 177 (182)
Q Consensus 145 ~~~~~---------~--~~~~~~~~Sa~~~------~~i~~~~~~l~~~i 177 (182)
..... . ..+++++|||++| .|++++|++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00111 1 1788999999999 99999999998753
No 96
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=3.6e-31 Score=182.73 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=113.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeE-EEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
...+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ..+.+.+||+||+++++.++..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 346899999999999999999999888766 6777662221 1222 45678899999999999999999999999999
Q ss_pred EEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCC------------HHHHHHhhcccccCCCc-eEEE
Q 030122 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD------------DAAVSEALELHKIKNRQ-WAIF 156 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 156 (182)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... .++.. .+ ....+ .+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~-~~----~~~~~~~~~~ 158 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE-EL----KKLIGAPAYI 158 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH-HH----HHHHTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHH-HH----HHHcCCCEEE
Confidence 99999999999987 5777775543 4899999999999865321 11111 11 11112 3699
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=7.3e-32 Score=189.18 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=121.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....+||+++|++|||||||+++|.+..+.. ..++.+ +....+.+.+ +.+.+||+||++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 3557899999999999999999999988776 556655 5555566644 7899999999999999999999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-----HHHHHHhhcccccCCCceEEEEecccCC
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-----DAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ...+.. ..+++++++||++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNA 180 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCC
Confidence 99999999999999999988885543 35899999999999975421 122222 23456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++|+++.+.+.++
T Consensus 181 ~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2.9e-31 Score=184.06 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=118.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC--CCcc-ccCCCceeeEEEEe-------CCEEEEEEECCCCCCChhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 86 (182)
++||+++|++|||||||+++|++. .+.. +.+|++.+.....+ ..+.+.+||++|++++..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 4444 78888866554432 4678999999999999888899999999
Q ss_pred EEEEEEeCCCc-chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce----EEEEeccc
Q 030122 87 AVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW----AIFKTCAI 161 (182)
Q Consensus 87 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (182)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+.+................+..++ .++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57999999998876543 5799999999999975322211111111122222333 49999999
Q ss_pred CCC-CHHHHHHHHHHHHhcCC
Q 030122 162 KGE-GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 162 ~~~-~i~~~~~~l~~~i~~~~ 181 (182)
+|. |++++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 997 99999999998887643
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=4.5e-29 Score=171.62 Aligned_cols=161 Identities=19% Similarity=0.084 Sum_probs=121.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
....++|+++|++|||||||+++|.+..+.. ..++.+ +....+.+.+..+.+|||||++++..++..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 3456899999999999999999999988766 444443 5556677788899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cCCC--ceEEEEecccCCCCH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IKNR--QWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~Sa~~~~~i 166 (182)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+. ..+++...+... . .... .++++++||++|.|+
T Consensus 85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 9999885332222 2222222 257899999999999864 333333333211 1 1222 378999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++|+++.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 159 DHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999987754
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=5.7e-30 Score=178.71 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=116.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC--CccccCCCc--eeeEEEEeC--CEEEEEEECCCCCC-ChhhhhhhCCCCCE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE--VVSTIPTIG--FNVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~--~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 87 (182)
...+||+++|++|||||||+++|++.. +....++++ +....+.+. .+.+.+|||+|.+. ++.++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 346899999999999999999999633 333223344 334455554 35678999999876 55677778888999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||++++++|+.+..|+..+.......++|+++|+||+|+..... .++. ..+ ....+++++++||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 999999999999999999988776543345799999999999864322 2221 111 112235699999999999
Q ss_pred HHHHHHHHHHHHh
Q 030122 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 i~~~~~~l~~~i~ 178 (182)
++++|+++++.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=1.2e-29 Score=187.96 Aligned_cols=157 Identities=14% Similarity=0.100 Sum_probs=117.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---hhhhhCCCCCEEEEE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~~i~v 91 (182)
||+++|+.|||||||++++.++.+.. ..||+++....+. ..+++++|||+|+++|+. .+..|+++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 69999999999999999988665432 5788887776653 458999999999999974 468899999999999
Q ss_pred EeCCCc--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccC----CCceEEEEeccc
Q 030122 92 VDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIK----NRQWAIFKTCAI 161 (182)
Q Consensus 92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 161 (182)
||++++ +.++.+..|+..+... .+++|+++++||+|+...... .++....+...++ ..++.+++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2233333334433332 368999999999999764321 2344444334343 257899999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030122 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~ 179 (182)
+ .++.++|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5999999999876654
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2e-31 Score=187.62 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=124.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEe--CCEEEEEEECCCCCCChhhhhhhCCCCCEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 89 (182)
....+||+++|++|+|||||+++|.++.+.. +.+|.+.. ...+.+ ..+.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 3567899999999999999999999888766 56666522 222233 4577889999999999999999999999999
Q ss_pred EEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH---------HHHHhhcccccCCCce-EEEEe
Q 030122 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---------AVSEALELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 158 (182)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..... .+.........+..++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 999999999999887 6766664432 489999999999997543211 1111222222333444 79999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i 177 (182)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.9e-28 Score=174.33 Aligned_cols=163 Identities=14% Similarity=0.044 Sum_probs=113.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCC------CCCh---hhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQ------TSIR---PYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~~---~~~~~~~ 82 (182)
...++|+++|++|||||||+++|++..+.. ...|..+....+.+....+.+|||||+ ++.. ..+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 457899999999999999999999887753 222444555666667899999999998 3321 1233457
Q ss_pred CCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCC--ceEEEEe
Q 030122 83 PNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR--QWAIFKT 158 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (182)
..+|++++|||++++.++. ....|+..+... ..+.|+++|+||+|+.+................... .++++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 7899999999999987764 334566666443 248999999999999764332111111111111112 2679999
Q ss_pred cccCCCCHHHHHHHHHHHHhc
Q 030122 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
||++|.|++++|+++.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.3e-27 Score=162.82 Aligned_cols=147 Identities=24% Similarity=0.199 Sum_probs=109.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCC--CceeeEEEEeCCEEEEEEECCCCCCCh------hhhhhhCC--CC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t--~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~~ 85 (182)
.++|+++|++|+|||||+++|.+..+.. ..|+ .......+.+.+..+.+|||||++++. .+...++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 5799999999999999999999876543 3343 334455666778999999999998875 34455664 79
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+.... ..+.+.+.++ ++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 9999999998754 34456666544 478999999999975321 2233443332 359999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030122 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=3.7e-28 Score=180.86 Aligned_cols=161 Identities=15% Similarity=0.111 Sum_probs=123.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC--Ccc--ccCCCceeeEEEEe-CCEEEEEEECCCCCCC-----hhhhhhhCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE--VVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~--~~~--~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~~ 86 (182)
.+||+++|++|||||||+++++++. +.. +.+|.+.....+.+ .++.+.+||+||++++ ..++..+++++|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 5799999999999999999999873 322 78899888888776 7899999999999988 678888999999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHH---HHHhhcccccCCC---ceEEEEec
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAA---VSEALELHKIKNR---QWAIFKTC 159 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~S 159 (182)
++|+|||++++.+++.+..|...+.... ...++|+++|+||+|+.+.....+ +............ .++++++|
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tS 162 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTS 162 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEee
Confidence 9999999999999998876644433211 126899999999999985211210 1111112222222 37899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++ .|+.++|..+++.+.
T Consensus 163 a~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 163 IWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp TTS-SHHHHHHHHHHHTTC
T ss_pred ecC-ChHHHHHHHHHHHHc
Confidence 999 899999999887553
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=2e-28 Score=170.83 Aligned_cols=161 Identities=12% Similarity=0.041 Sum_probs=109.0
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCC----------CCCChhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGG----------QTSIRPYW 78 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~ 78 (182)
.+....++|+++|++|+|||||+++|++..+.. ..++.+ ........ +..+.+||||| ++.+..++
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 345567899999999999999999999887544 444444 22222233 23799999999 55566667
Q ss_pred hhhCCCC---CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 79 RCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 79 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..++..+ |++++|+|+++..++.... ++..+.. .+.|+++|+||+|+.+.....................++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999887776542 1122211 578999999999998754443222222111112346789
Q ss_pred EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+++||++|.|++++|+++.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-29 Score=182.36 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=117.0
Q ss_pred CCcceeEEEEEecC---------CCChHHHHHHhhc---CCCcc-ccCCC-cee--eEE----------------EEeCC
Q 030122 13 PPCTHVLGFSFFID---------NFGNLCDTDRLQM---GEVVS-TIPTI-GFN--VET----------------VQYNN 60 (182)
Q Consensus 13 ~~~~~~~i~viG~~---------~~GKssl~~~l~~---~~~~~-~~~t~-~~~--~~~----------------~~~~~ 60 (182)
.....+||+++|.+ |||||||+++|++ ..+.. +.+|+ +.+ ... +....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567899999999 9999999999998 44443 55543 311 111 12256
Q ss_pred EEEEEEE-----------------------CCCCCCChhhhhhhCC---------------------CCCEEEEEEeCCC
Q 030122 61 IKFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTEAVIYVVDSSD 96 (182)
Q Consensus 61 ~~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~ 96 (182)
+.+.+|| ++|+++++.++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 7777878778888887 7999999999999
Q ss_pred c--chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 97 T--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~--~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
+ .+|+.+..|+..+.......++|+++|+||+|+......++.. .+.. ....++++++||++|.|++++|+++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~-~~~~---~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAH-TFAL---SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHH-HHHH---TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHH-HHHH---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 9999999999888765333689999999999986432222111 1111 11345799999999999999999999
Q ss_pred HHHh
Q 030122 175 NTLK 178 (182)
Q Consensus 175 ~~i~ 178 (182)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=2.7e-28 Score=169.90 Aligned_cols=161 Identities=22% Similarity=0.134 Sum_probs=112.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEE-eCCEEEEEEECCC----------CCCChhhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQ-YNNIKFQVWDLGG----------QTSIRPYWRC 80 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~d~~g----------~~~~~~~~~~ 80 (182)
.++...+||+++|++|||||||+++|++.......++.+....... ..+..+.+||||| ++.+..++..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4456678999999999999999999999886555555553222211 1345688999999 4455666666
Q ss_pred hCCCC---CEEEEEEeCCCcchH--HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEE
Q 030122 81 YFPNT---EAVIYVVDSSDTDRI--QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 81 ~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+++.+ |++++|+|.++..+. ..+..|+.. .+.|+++|+||+|+.+........+...........+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 66554 999999998876443 333344333 378999999999998654443332222111112234579
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+++||++|.|++++|+++.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999998865
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=1.2e-27 Score=164.21 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=112.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh--------hhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~ 84 (182)
..+|+++|++|||||||+++|.+..... ...|..+....+.+.+..+.+|||||++++... ...++++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999876432 222334555667778888999999998764321 1235789
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|++++.+++ ...|+..+.... ..++|+++|+||+|+.+.. .........+++++||++|.
T Consensus 84 ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp CSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTCT
T ss_pred CCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCCC
Confidence 99999999999988876 346666665432 3579999999999985421 11122245689999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030122 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~i~~~~~~l~~~i~~ 179 (182)
|++++|+++.+.+..
T Consensus 152 gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 152 GVDVLRNHLKQSMGF 166 (172)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999987654
No 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=2.5e-27 Score=177.81 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=123.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee-eEEEEeC--CEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
..++|+++|.+|+|||||+++++++.+.. +.+|.+.. ...+... .+.+.+||+||++++...+..++..+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 35899999999999999999999888766 77777632 3334443 45667999999999999999999999999999
Q ss_pred EeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---------cccccCCCce-EEEEecc
Q 030122 92 VDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQW-AIFKTCA 160 (182)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~Sa 160 (182)
||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.....+..... .....+..++ +++++||
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999987 6766665543 489999999999986532111111000 0001112233 7999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++|+++.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998865
No 111
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=1.6e-27 Score=167.04 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=124.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 90 (182)
..++|+++|++|||||||++++.+..+.. +.||.+.. ...+.+.+ +.+.+||++|+++++..+..++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 45899999999999999999999988766 67777643 44555644 678899999999998888889999999999
Q ss_pred EEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+.. ..++.. .+ .....+.++++|++++.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~~d~Sal~~~~i~~ 157 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNNLSFIETSALDSTNVEE 157 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HH----HHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999888888776543 23578999999999996532 222222 11 123346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030122 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 ~~~~l~~~i~~ 179 (182)
+|+++.+.+.+
T Consensus 158 l~~~l~~~~~~ 168 (199)
T 2f9l_A 158 AFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=9.2e-29 Score=171.74 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=116.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeCCEEEEEEECCC-----------CCCChhhhhhhCCC-
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~~- 84 (182)
+||+++|++|||||||++++.+..+.. +.|+.......+.+. .+.+||||| ++.++..+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999988766 566666555555555 789999999 45566677777776
Q ss_pred CCEEEEEEeCCCcchHHHH-HHHHHH--------HHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCce
Q 030122 85 TEAVIYVVDSSDTDRIQTA-KEEFHA--------ILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (182)
++++++|+++.+..++..+ ..|... +.......++|+++|+||+|+.... ..+++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777778888776 444432 2222222579999999999998643 1233344443311 11134
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 154 AIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 154 ~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
+++++||++|.|++++|+++.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 5899999999999999999999887654
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=4.1e-27 Score=159.22 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=105.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC-------ChhhhhhhCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 86 (182)
.||+++|++|+|||||++++.+..+.. ...+.......+...+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 22233355556666788999999999887 3445677889999
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce-EEEEecccCCCC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++++|+|.++..+... .++...+.. .+.|+++|+||+|+.+.. ++. ..+ . ..++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~-~~~----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYL-GPL----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGC-GGG----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhH-HHH----H-hCCCCCeEEEecccCCC
Confidence 9999999988644322 233333332 478999999999997531 111 111 1 1222 589999999999
Q ss_pred HHHHHHHHHHHH
Q 030122 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 i~~~~~~l~~~i 177 (182)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998865
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=9.7e-27 Score=161.38 Aligned_cols=152 Identities=23% Similarity=0.190 Sum_probs=116.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCCh------hhhhhhCC-
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP- 83 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~- 83 (182)
+...++|+++|++|||||||+++|++..+.. ..++.. .....+.+.+..+.+|||||++.+. .++..++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 3456899999999999999999999876544 444444 4555666688999999999998875 34566664
Q ss_pred -CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEe
Q 030122 84 -NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 84 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ...+++.+.++ ++++++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~ 148 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPL 148 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEEC
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEE
Confidence 5899999999764 5666677776654 57899999999998532 12334444433 359999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC
Q 030122 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
||++|.|++++|+++.+.+.+.
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC
T ss_pred EecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 115
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.95 E-value=1.2e-26 Score=172.77 Aligned_cols=137 Identities=24% Similarity=0.375 Sum_probs=112.6
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
+.||+|+....+.++++.+++||++|+++++.+|..|+++++++|+|||++ +.+++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 467888888888899999999999999999999999999999999999654 7789999999999998887
Q ss_pred CCCCCeEEEEeeCCCCCCC------------------CCHHHHHHh----h-cccccCCCceEEEEecccCCCCHHHHHH
Q 030122 115 ELKGAVALIFANKQDLPGA------------------LDDAAVSEA----L-ELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
...++|+++++||+|+... ...++..+. + .......+.+.+++|||+++.||+++|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 7789999999999998541 222222211 1 1222345678999999999999999999
Q ss_pred HHHHHHhcCC
Q 030122 172 WLSNTLKSGG 181 (182)
Q Consensus 172 ~l~~~i~~~~ 181 (182)
.+.+.+.+.+
T Consensus 311 ~v~~~Il~~~ 320 (327)
T 3ohm_A 311 AVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 116
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=5.9e-27 Score=163.26 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=124.9
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCC--EEEEEEECCCCCCChhhhhhhCCCCCEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 88 (182)
....++|+++|++|||||||++++.+..+.. +.+|.+.. ...+.+.+ +.+.+||++|.+++...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 3456899999999999999999999988766 77888744 44555544 5667899999999999899999999999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC--CHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
++|+|.++..+++.+..|+..+... ...+.|+++++||+|+.+.. ..++ ...+. ....+.++++|++++.|+
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~----~~~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA----EKNGLSFIETSALDSTNV 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH-HHHHH----HHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHH-HHHHH----HHcCCEEEEEeCCCCCCH
Confidence 9999999999998888888766443 23578999999999986532 2222 22221 233467999999999999
Q ss_pred HHHHHHHHHHH
Q 030122 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~~~~~l~~~i 177 (182)
+++|+++.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 117
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.94 E-value=1.2e-26 Score=174.96 Aligned_cols=135 Identities=22% Similarity=0.394 Sum_probs=110.7
Q ss_pred cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccC
Q 030122 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|+|+....+.++.+.+.+||++|+++++.+|..++++++++|+|||+++ .+++++...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 467888888888899999999999999999999999999999999999998 6789999999999988766
Q ss_pred CCCCeEEEEeeCCCCCC-----------------CCCHHHHHHhhc-----cccc-CCCceEEEEecccCCCCHHHHHHH
Q 030122 116 LKGAVALIFANKQDLPG-----------------ALDDAAVSEALE-----LHKI-KNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 116 ~~~~p~i~v~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
..++|+++++||+|+.. ....++...... +... ..+.+.+++|||++|.|++++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 78899999999999852 123333322221 1111 246788999999999999999999
Q ss_pred HHHHHhcC
Q 030122 173 LSNTLKSG 180 (182)
Q Consensus 173 l~~~i~~~ 180 (182)
+.+.+.+.
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=6.4e-26 Score=164.88 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=113.1
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChhh------hhhhC--C
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~ 83 (182)
...++|+++|++|||||||+++|++..+.. ..|... .....+.+.+..+.+|||||+..+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 456899999999999999999999877644 334333 444455557899999999999887653 24555 5
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEec
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..|+..+.. .++|+++|+||+|+... .....+...++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 89999999999987653 345555544 47999999999998532 12344444443 4599999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|++++|+++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998775
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=7.7e-26 Score=168.41 Aligned_cols=162 Identities=14% Similarity=0.036 Sum_probs=119.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh----------h
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR----------P 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~----------~ 76 (182)
.++...-.|+++|.+|||||||+|+|++..+.. ...|........... +..+.+|||||+.... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345566799999999999999999999988754 222222333444556 8999999999987654 4
Q ss_pred hhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC-CCCCHHHHHHhhcccccCCCceEE
Q 030122 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-GALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 77 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
.+..++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i 158 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEI 158 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCE
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeE
Confidence 566778899999999999999888887777766644 478999999999997 3322223222221111 122459
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+.+||++|.|++++|+++.+.+.+
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999988754
No 120
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.94 E-value=1.3e-25 Score=169.88 Aligned_cols=133 Identities=25% Similarity=0.351 Sum_probs=100.5
Q ss_pred CCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCC
Q 030122 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+|+....+.++++.+.+|||+|+++++..|..++++++++|+|||+++ .+++.+...|+..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 45667777778889999999999999999999999999999999999999 78999999999999887667
Q ss_pred CCCeEEEEeeCCCCCC-----------------C-CCHHHHHHhh-----cccccC-CCceEEEEecccCCCCHHHHHHH
Q 030122 117 KGAVALIFANKQDLPG-----------------A-LDDAAVSEAL-----ELHKIK-NRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
.++|+++++||+|+.. . ...++..... .+.... .+.+.+++|||+++.|++++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 8899999999999852 1 3333333221 111111 45678999999999999999999
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 121
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.93 E-value=7.5e-26 Score=169.04 Aligned_cols=135 Identities=26% Similarity=0.375 Sum_probs=109.2
Q ss_pred ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhcc
Q 030122 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
+.+|+|+....+.++++.+++||++|+++++.+|..|+++++++|+|||++ +.+++.+...|+..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345778888888889999999999999999999999999999999999998 7899999999999999887
Q ss_pred CCCCCeEEEEeeCCCCCCC-----------------CCHHHHH----Hhh-------cccccCC-----------CceEE
Q 030122 115 ELKGAVALIFANKQDLPGA-----------------LDDAAVS----EAL-------ELHKIKN-----------RQWAI 155 (182)
Q Consensus 115 ~~~~~p~i~v~nK~D~~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~ 155 (182)
...++|+++++||+|+... ...++.. ..+ .+..... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 7789999999999998531 1222221 111 1111112 56899
Q ss_pred EEecccCCCCHHHHHHHHHHHHhc
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++|||+++.+++.+|..+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.3e-26 Score=164.99 Aligned_cols=163 Identities=14% Similarity=0.024 Sum_probs=108.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCC-cccc----CCCceeeEEEE-eCCEEEEEEECCCCCC----------Ch
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VSTI----PTIGFNVETVQ-YNNIKFQVWDLGGQTS----------IR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~~~----~t~~~~~~~~~-~~~~~~~i~d~~g~~~----------~~ 75 (182)
.+....++|+++|.+|+|||||+++|++... .... .|.......+. ..+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 4455678999999999999999999998873 2222 22223333333 2568899999999533 24
Q ss_pred hhhhhhCCC---CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc----
Q 030122 76 PYWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---- 148 (182)
Q Consensus 76 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~---- 148 (182)
.++..++.. +|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+.+..........+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 444455544 78899999998754422 2233333332 57899999999999864332222111111100
Q ss_pred --CCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
.....+++++||++|.|++++|++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1356789999999999999999999988764
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=7e-26 Score=164.43 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=109.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh----------hhhhhC--
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|.+|||||||+|+|.+..... ..|+.. .....+.+.+..+.+|||||...+.. .+..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 389999999999999999999886544 334433 55556666888999999999988764 456666
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEEEe
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++|++|+|+|+++.++...+..+ +.. .+.|+++|+||+|+.... ....+...++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 899999999999986555444333 322 479999999999985432 2334444443 459999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 030122 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~i~~~~~~l~~~ 176 (182)
||++|.|++++|+++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 124
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.2e-25 Score=178.65 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=112.7
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEE--------e----CCEEEEEEECCCCCCChhhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~i~d~~g~~~~~~~~~ 79 (182)
.+...+||+++|.+|||||||++++.+..+.. ..+|++.+..+.. + ..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35677999999999999999999999988876 8888886666442 1 368999999999999999999
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++++|++|+|+|+++.+ ....|+..+.... .+.|+++|+||+|+.+... .+++..... ..++++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEE
Confidence 9999999999999987654 4556666665543 4799999999999976433 333333322 22345999
Q ss_pred ecccCCCCHHHHHHHHHHHHhcC
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+||++|.|++++++++.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988654
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=7e-25 Score=162.56 Aligned_cols=155 Identities=14% Similarity=-0.015 Sum_probs=111.0
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCc-eeeEEEEeCCEEEEEEECCCCCC--------ChhhhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 82 (182)
.+..+|+++|.+|+|||||+|+|++..+.. ...|.. .....+...+..+.+|||||..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 345689999999999999999999988754 222222 22233445789999999999876 344566788
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEeccc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+.+|++++|+|++++.+.. ..|+...+... ..+.|+++|+||+|+..... ..+....+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 9999999999998875543 34443333322 14799999999999975432 22222222 122469999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030122 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~ 178 (182)
+|.|++++++++.+.+.
T Consensus 156 ~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 156 DERQVAELKADLLALMP 172 (301)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999987653
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=9.9e-26 Score=165.27 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=109.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh----------hhhhhC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF 82 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~ 82 (182)
+.++|+++|.+|||||||+|+|.+..+.. ..|+.. .....+.+.+..+.+|||||+..+.. .+..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 35899999999999999999999887543 334333 44555666778999999999988762 233333
Q ss_pred --CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC----CHHHHHHhhcccccCCCceEEE
Q 030122 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+|++++|+|+++.++...+..++. . .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 68999999999988655444444333 2 278999999999986432 2334444443 4599
Q ss_pred EecccCCCCHHHHHHHHHHHHh
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++||++|.|++++|+++.+.+.
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.9e-25 Score=163.40 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=107.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceeeEEEEeC-CEEEEEEECCCCCCCh------hhhhhhCC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR------PYWRCYFP--NTE 86 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~------~~~~~~~~--~~~ 86 (182)
.++|+++|++|||||||+++|++..... ..|...+......+. +..+.+|||||++.+. .++..++. ++|
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 4799999999999999999999875332 334333333333333 6789999999999876 34555664 699
Q ss_pred EEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC----CCHHHHHHhhcccccCCCceEEEEecccC
Q 030122 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.++. ..|...+.. .++|+++|+||+|+... .....+...++ ++++++||++
T Consensus 83 ~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~ 147 (272)
T 3b1v_A 83 SILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSALK 147 (272)
T ss_dssp EEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBTTT
T ss_pred EEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEccC
Confidence 99999999875443 445555544 57999999999997532 22344444443 4599999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030122 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~ 178 (182)
|.|++++|+++.+.+.
T Consensus 148 g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 148 QTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TBSHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988654
No 128
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.92 E-value=2.2e-25 Score=168.10 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=93.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCC----------CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 128 (182)
+.+.+.+|||+|+++++.+|..++++++++|+|||++ +.++|+....|+..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3588999999999999999999999999999999998 789999999999999887666789999999999
Q ss_pred CCCCCC----C-------------------HHHHHHhhccc-------c-c---CCCceEEEEecccCCCCHHHHHHHHH
Q 030122 129 DLPGAL----D-------------------DAAVSEALELH-------K-I---KNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 129 D~~~~~----~-------------------~~~~~~~~~~~-------~-~---~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
|+.... . .++........ . . ..+.+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 974210 0 11111110100 0 0 12456789999999999999999999
Q ss_pred HHHhc
Q 030122 175 NTLKS 179 (182)
Q Consensus 175 ~~i~~ 179 (182)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.3e-25 Score=174.54 Aligned_cols=160 Identities=16% Similarity=0.030 Sum_probs=115.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCC----------CCChhhhh-
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQ----------TSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~- 79 (182)
...+||+++|.+|+|||||+|+|++..... ...|.......+.+.+..+.+|||||+ +.|..+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 356899999999999999999999887642 222333445566778889999999997 33433332
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..++++. .|+..+.. .+.|+++|+||+|+.+... .+++.+.+.........+++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 477889999999999998888775 45555543 5799999999999976543 2333333322222234567999
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=8.2e-24 Score=154.93 Aligned_cols=150 Identities=20% Similarity=0.134 Sum_probs=114.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEeCCEEEEEEECCCCCCChh------hhhhhC--CCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~ 85 (182)
.++|+++|++|||||||+++|.+..+.. ..++.+ .....+.+.+..+.+||+||+..+.. .+..++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 4799999999999999999999887644 444444 44555666888999999999988766 555666 689
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC----CCCHHHHHHhhcccccCCCceEEEEeccc
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|.++. +....|+..+... ...|+++|+||+|+.+ ......+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999998875 3444455555443 2399999999999643 123445555554 359999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030122 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~i~~~~~~l~~~i~~~ 180 (182)
+|.|++++|+++.+.+...
T Consensus 149 ~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GTBTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999887643
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.6e-24 Score=168.01 Aligned_cols=151 Identities=18% Similarity=0.109 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhh--------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~ 83 (182)
..++|+++|.+|+|||||+|+|.+..... ...|..+....+.+.+..+.+|||||+..+...+ ..++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 35789999999999999999999876322 2233345566777789999999999987765433 34678
Q ss_pred CCCEEEEEEeCCCcchHHH---HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 84 NTEAVIYVVDSSDTDRIQT---AKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
.+|++++|+|++++.+++. ...|+..+ .+.|+++|+||+|+.+...... +.+... ...+++++||
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSA 379 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISA 379 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBT
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEE
Confidence 9999999999999888753 33333332 3799999999999986543321 111110 0135999999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 030122 161 IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~ 178 (182)
++|.|++++++++.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
No 132
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.92 E-value=5.6e-25 Score=167.71 Aligned_cols=132 Identities=26% Similarity=0.372 Sum_probs=104.0
Q ss_pred CCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCC----------cchHHHHHHHHHHHHhccCCC
Q 030122 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+|+....+.+.++.+.+|||+|+++++.+|..|+++++++|+|||+++ .++|+.+..|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5556666677788999999999999999999999999999999999999 899999999999998876667
Q ss_pred CCeEEEEeeCCCCCCCC-----------------------------C--HHHHHHhhccc----c-----cCCCceEEEE
Q 030122 118 GAVALIFANKQDLPGAL-----------------------------D--DAAVSEALELH----K-----IKNRQWAIFK 157 (182)
Q Consensus 118 ~~p~i~v~nK~D~~~~~-----------------------------~--~~~~~~~~~~~----~-----~~~~~~~~~~ 157 (182)
++|++||+||+|+.... . ..+....+... . .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 89999999999974210 0 01111111000 0 0124678899
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
|||+++.||+++|.++.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 133
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-26 Score=164.23 Aligned_cols=118 Identities=21% Similarity=0.177 Sum_probs=96.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCC----C
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 85 (182)
....++|+++|++|+|||||+++|.+..+.. +.++.+... ....+.+||+||++.++..+..++.. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 3456899999999999999999999887654 333333221 56789999999999999888888877 8
Q ss_pred CEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCH
Q 030122 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 86 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~ 136 (182)
|++|+|+|++ ++.++.....|+..++... ...++|+++|+||+|+......
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 9999999999 8899999999988887643 2368999999999999876653
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=3.1e-25 Score=170.74 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=110.4
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCC-EEEEEEECCCCCCChhh-------hh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY-------WR 79 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~-------~~ 79 (182)
.+....++|+++|..|+|||||+++|++..+.. ...|.......+.+.. ..+.+|||||+..+..+ +.
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 355667899999999999999999999887642 3444556666777744 49999999999877654 45
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.++.++|++++|+|+...+ ....|+..+.. .++|+++|+||+|+...... +..+.+. ...+++++++|
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence 5788999999999984333 33445555544 37899999999999876543 2222222 23446799999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|++++|+++.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999874
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.2e-24 Score=163.55 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=117.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-EEEEEEECCCC----CCChhhhhhhCC---CCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCYFP---NTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~i~d~~g~----~~~~~~~~~~~~---~~~~ 87 (182)
+|+++|.+|||||||+++|++..... ...|.......+.+.. ..+.+||+||. ..++.+...+++ .+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 68999999999999999999876432 3456566666677754 89999999994 344445455544 5999
Q ss_pred EEEEEeCCC---cchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC
Q 030122 88 VIYVVDSSD---TDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 88 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+|+|+|+++ .++++.+..|+.++..... ..++|+++|+||+|+..... .+++.+.+.. ..+++++||++
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~t 313 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVT 313 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCC
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCC
Confidence 999999998 7889999888888876532 36899999999999975321 1222222211 14599999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030122 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~i~~~~~~l~~~i~~~ 180 (182)
+.|+++++.+|.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 314 REGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhhC
Confidence 999999999999988754
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.6e-23 Score=157.72 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=117.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh---------hhhhhC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------~~~~~~ 82 (182)
...++|+++|++|||||||+++|.+..... ...|.+.....+...+..+.+|||||...... ....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 345799999999999999999999877532 34455566666666788999999999855321 122344
Q ss_pred CCCCEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+......++..... ....++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5699999999998877 7788888888876643 289999999999997533222222211 123456999999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=9.2e-24 Score=165.09 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=113.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCc--c--ccCCCceeeEEEEeCCEEEEEEECCCCC-CChh--------hhhhhCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVV--S--TIPTIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYFP 83 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~-~~~~--------~~~~~~~ 83 (182)
.++|+++|.+|+|||||+|+|.+.... . ...|..+....+.+.+..+.+|||||.. .+.. ....++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 379999999999999999999987632 2 3334446677788889999999999987 5432 2345778
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.+++... ++..+ .+.|+++|+||+|+.+....+++..... ..++++++||++|
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg 389 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG 389 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence 999999999999988876543 22222 4789999999999976544444433221 1235999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030122 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~ 178 (182)
.|++++++++.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988654
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.7e-23 Score=162.74 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=103.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCC---------hhhhhhhCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|||||||+|+|++..... ...|.......+.+.+..+.+|||||.+.. +.++..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 379999999999999999999877432 223333556677788899999999998752 3456778999
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCce-EEEEecccCC
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
+|++++|+|.++..+..+ .++...+.. .++|+++|+||+|+.... ..+....+.. .++ .++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 999999999987655432 222222222 378999999999975310 1111011111 111 3799999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030122 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~ 179 (182)
.|++++++++.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988753
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=5.1e-24 Score=166.38 Aligned_cols=161 Identities=17% Similarity=0.037 Sum_probs=113.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCC----------CCCChhhhh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR 79 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~ 79 (182)
....++|+++|.+|+|||||+++|.+..... ...|.......+.+.+..+.+||||| ++.+..+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 3456899999999999999999999775322 22233344556777888999999999 566666544
Q ss_pred -hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEE
Q 030122 80 -CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++.+|++++|+|+++..+.. ...|+..+.. .+.|+++|+||+|+.+... .+++.+...........++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4778899999999998765422 2334444433 5799999999999976432 233333222221122345799
Q ss_pred EecccCCCCHHHHHHHHHHHHhc
Q 030122 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
++||++|.|++++|+++.+.+.+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=2.9e-23 Score=159.76 Aligned_cols=162 Identities=12% Similarity=0.005 Sum_probs=114.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCc----------e---------eeEEEEeCCEEEEEEECCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIG----------F---------NVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~----------~---------~~~~~~~~~~~~~i~d~~g 70 (182)
....++|+++|++|+|||||+++|.+..... ...+.+ + ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456899999999999999999999754322 000000 0 0000001126899999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhc--cccc
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE--LHKI 148 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~--~~~~ 148 (182)
+++|...+..++..+|++++|+|+++..++.....|+..+... ...|+++|+||+|+.+.....+..+.+. ....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887777777776655433 3358999999999986432222211111 1111
Q ss_pred CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
....++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 223567999999999999999999998664
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=9.2e-24 Score=165.60 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=111.9
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCC----C---cc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGE----V---VS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 81 (182)
.+...+++|+++|++++|||||+++|.+.. . .. +..|+......+.+.+..+.+|||||+++|...+..+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 344567999999999999999999999876 2 11 3445566666777788999999999999998888889
Q ss_pred CCCCCEEEEEEeCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc--cc-CCCceEE
Q 030122 82 FPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--KI-KNRQWAI 155 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 155 (182)
+..+|++++|+|+++. .+.+.+ ..+ .. .++|+++++||+|+.+....+++.+.+... .. ....+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHM----LIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHH----HHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHH----HHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999873 333322 222 21 468889999999998532222222211100 00 0114679
Q ss_pred EEecccCCCCHHHHHHHHHHHHh
Q 030122 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+++||++|+|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998763
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=2.2e-23 Score=162.24 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCC--CceeeEEEEeCCEEEEEEECCCCCCChhhh--------hhhCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFP 83 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t--~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~ 83 (182)
..++|+++|++|+|||||+|+|.+..... ..++ ..+....+.+.+..+.+|||||...+...+ ..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 35789999999999999999999865432 2232 235556677788999999999986654332 33678
Q ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCC
Q 030122 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|.+++.+... ..|+..+ .+.|+++|+||+|+.+..... ..... ....+++++||++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~~-~~~~~~i~iSAktg 368 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEYP-ENITQIVHTAAAQK 368 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCCC-TTCCCEEEEBTTTT
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHHh-ccCCcEEEEECCCC
Confidence 8999999999998776554 3444444 347999999999997642211 01111 13456999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030122 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~ 180 (182)
.|++++++++.+.+...
T Consensus 369 ~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 369 QGIDSLETAILEIVQTG 385 (462)
T ss_dssp BSHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999987643
No 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.1e-24 Score=147.87 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=96.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCC----C
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~ 85 (182)
....++|+++|++|||||||+++|.+..+.. ..++.+. .+....+.+||+||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3456899999999999999999999887644 2333322 1256788999999999998877777765 8
Q ss_pred CEEEEEEeCC-CcchHHHHHHHHHHHHhcc---CCCCCeEEEEeeCCCCCCCCCHHHHHHhh
Q 030122 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 86 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~D~~~~~~~~~~~~~~ 143 (182)
|++++|||++ +..++..+..|+..++... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 8899999999988876543 22589999999999998877666555444
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=7.1e-24 Score=164.70 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=100.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCCCC--------CChhhhhhhCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~~ 85 (182)
.+|+++|.+|||||||+|+|.+.......++.| .....+.+.+..+.+|||||++ .++.++..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 689999999999999999999877654333333 3333444467889999999986 4556777888999
Q ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCC
Q 030122 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|..+..+..+ .++..++.. .++|+++|+||+|+.... .+. .......--.++.+||++|.|
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~-----~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANI-----YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhH-----HHHHHcCCCCeEEEeCcCCCC
Confidence 99999999988766543 344444443 578999999999987431 111 111111111589999999999
Q ss_pred HHHHHHHHHHHHh
Q 030122 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 i~~~~~~l~~~i~ 178 (182)
++++++++.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999998775
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=3e-24 Score=169.20 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=114.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--eeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG--FNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 91 (182)
+.++|+++|++++|||||+++|.+..+.. ..+++. +....+.+ .+..+.+|||||++.|..++..+++.+|++|+|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 34689999999999999999999766544 333333 33344444 456899999999999999999999999999999
Q ss_pred EeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEEEecccCCCCHHH
Q 030122 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
+|+++....+....| ..+.. .++|+++++||+|+.+... ..++.............++++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999986655544333 22222 5789999999999975322 122222111111112357899999999999999
Q ss_pred HHHHHHHHHh
Q 030122 169 GMDWLSNTLK 178 (182)
Q Consensus 169 ~~~~l~~~i~ 178 (182)
+|+++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988764
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=9.7e-23 Score=158.44 Aligned_cols=159 Identities=15% Similarity=0.043 Sum_probs=107.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh------------hh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~------------~~ 79 (182)
..++|+++|++|||||||++++++..... ...|.......+.+.+..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999876532 222333445667778889999999997543221 12
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--HHHHHHhhcccccCCCceEEEE
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|+++..+.+.. ++...+.. .+.|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 355678999999999887666542 22222222 5799999999999975432 3333322222222223456999
Q ss_pred ecccCCCCHHHHHHHHHHHHhc
Q 030122 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.1e-22 Score=146.58 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=106.7
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCC-cc-ccC---CCceeeEEEEeCCEEEEEEECCCCCCChh----------
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-VS-TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRP---------- 76 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-~~-~~~---t~~~~~~~~~~~~~~~~i~d~~g~~~~~~---------- 76 (182)
.+....++|+++|++|||||||+++|++... .. ..+ |.......+.+.+..+.+|||||+..+..
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3455678999999999999999999998773 32 332 34455556677889999999999765421
Q ss_pred -hhhhhCCCCCEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCCeEEEEee-CCCCCCCCCHHHHHHhh-------ccc
Q 030122 77 -YWRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFAN-KQDLPGALDDAAVSEAL-------ELH 146 (182)
Q Consensus 77 -~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~n-K~D~~~~~~~~~~~~~~-------~~~ 146 (182)
....+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+... ......... ...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 223367899999999999863332 23444555443321 2456666666 9999853 333211100 001
Q ss_pred ccCCCceEE--EEecccCCCCHHHHHHHHHHHHhcC
Q 030122 147 KIKNRQWAI--FKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 147 ~~~~~~~~~--~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
.+..+...+ +.+||++|.|++++|+++.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 111111012 7899999999999999999987653
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=5.3e-22 Score=154.11 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=106.5
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhcCCC-------------------------------cc---ccCCCceeeEEE
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQMGEV-------------------------------VS---TIPTIGFNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~~~~-------------------------------~~---~~~t~~~~~~~~ 56 (182)
..+...+++|+++|.+++|||||+++|+.... .. +..|+......+
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 34556789999999999999999999964311 00 122333445556
Q ss_pred EeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcch---HH---HHHHHHHHHHhccCCCCCe-EEEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGAV-ALIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~D 129 (182)
.+.+..+.+|||||+++|...+..+++.+|++|+|+|+++... |+ .....+..+.. .++| +++++||+|
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~D 166 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMD 166 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCC
Confidence 6688899999999999999999999999999999999987532 11 22222222211 3566 999999999
Q ss_pred CCCCCC----HHHHHHh----hcccccC-CCceEEEEecccCCCCHHHHHH
Q 030122 130 LPGALD----DAAVSEA----LELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 130 ~~~~~~----~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~ 171 (182)
+..... .+++... +....+. ...++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 964321 1222221 1111111 1257899999999999999654
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=6.6e-22 Score=156.28 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc------------------CCCcc-------ccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM------------------GEVVS-------TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
+..+|+++|++|+|||||+++|+. ..+.+ +..|+......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 456899999999999999999962 11111 23345555667777899999999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+|...+..+++.+|++|+|+|+++..+.+....| ..+.. .++|+++|+||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCSC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999987776665544 33322 578999999999997643
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=2.6e-22 Score=154.69 Aligned_cols=159 Identities=13% Similarity=-0.017 Sum_probs=101.7
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC---Ccc-ccC--CCceeeEEEEe---------------C--------CEEEEE
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE---VVS-TIP--TIGFNVETVQY---------------N--------NIKFQV 65 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~---~~~-~~~--t~~~~~~~~~~---------------~--------~~~~~i 65 (182)
...++|+++|+.++|||||+++|.+.. +.. +.+ |+...+....+ . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 346899999999999999999998543 222 333 55543333222 1 178999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHHH
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSE 141 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~~ 141 (182)
||+||+++|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999998643112222222222111 2358999999999976432 233333
Q ss_pred hhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 142 ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+.. .....++++++||++|+|+++++++|.+.+.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3221 1123567999999999999999999988664
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=3.4e-22 Score=151.91 Aligned_cols=146 Identities=8% Similarity=-0.063 Sum_probs=110.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|. .+..|++.....+.+.+..+.+|||||+++|.......++.+|++|+|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 45666676666777778899999999999998877778899999999999 4 44
Q ss_pred hHHHHHHHHHHHHhccCCCCCeE-EEEee-CCCCCCCCCHHH----HHHhhcccccCCCceEEEE--ecccC---CCCHH
Q 030122 99 RIQTAKEEFHAILEEEELKGAVA-LIFAN-KQDLPGALDDAA----VSEALELHKIKNRQWAIFK--TCAIK---GEGLF 167 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~p~-i~v~n-K~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~ 167 (182)
.+.....++..+.. .++|. ++++| |+|+ +....++ +.+.+... ....+++++ +||++ |+|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 45555555554433 45777 88999 9999 4321121 22221111 113578999 99999 99999
Q ss_pred HHHHHHHHHHh
Q 030122 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~~~~~l~~~i~ 178 (182)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999987754
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=9.2e-23 Score=158.35 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=103.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCcc--------------------------------ccCCCceeeEEEEeCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|++++|||||+++|+.. .+.. +..|+......+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4589999999999999999999864 2221 22344455556666888
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhc---cCCCC-CeEEEEeeCCCCCCCC-CH
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE---EELKG-AVALIFANKQDLPGAL-DD 136 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~-~p~i~v~nK~D~~~~~-~~ 136 (182)
.+.+|||||+++|...+..+++.+|++|+|+|+++ .+|+....|..+.... ....+ .|+++++||+|+.+.. ..
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 99999999999999999999999999999999998 6777544322221111 11124 4689999999997631 11
Q ss_pred -------HHHHHhhcccccCCCceEEEEecccCCCCHHHHH
Q 030122 137 -------AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 137 -------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
+++...+....+....++++++||++|+|+.+++
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1222222222222235789999999999998654
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=1e-21 Score=145.76 Aligned_cols=153 Identities=16% Similarity=0.017 Sum_probs=104.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---cc-CCCceeeEEEEeCCEEEEEEECCCCC-C--------ChhhhhhhC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TI-PTIGFNVETVQYNNIKFQVWDLGGQT-S--------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~-~t~~~~~~~~~~~~~~~~i~d~~g~~-~--------~~~~~~~~~ 82 (182)
+..+|+++|++|+|||||+++|++..+.. .. .|.......+......+.+|||||.. . +......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 44589999999999999999999887643 12 22222233345578899999999987 2 223345677
Q ss_pred CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC-CCHHHHHHhhcccccCCCc-eEEEEecc
Q 030122 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQ-WAIFKTCA 160 (182)
Q Consensus 83 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (182)
+.+|++++|+|.++ +.....|+...+.. .+.|+++++||+|+... ....+....+. ...+ ..++.+||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEEC
Confidence 88999999999876 22333344433332 57899999999999852 11112222221 1112 26899999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 030122 161 IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~ 178 (182)
++|.|++++++++.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987543
No 154
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.88 E-value=4.9e-22 Score=158.79 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=108.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCccc-----cCCCceeeEEEE----------------eCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVST-----IPTIGFNVETVQ----------------YNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~----------------~~~~~~~i~d~~g~~~~ 74 (182)
+.++|+++|++++|||||+++|.+..+... .++++....... +....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357999999999999999999987654332 234443322211 11236999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCC---cchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--------------HH
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSD---TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA 137 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~--------------~~ 137 (182)
..++..+++.+|++|+|+|+++ +.+++.+. .+.. .++|+++++||+|+..... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 9999999999999999999998 45554333 2211 5789999999999964211 00
Q ss_pred -----------HHHHhhccccc----------CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 -----------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+....+ ....++++.+||++|.|++++++++...+.
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111111 124578999999999999999999987654
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=3.7e-22 Score=154.01 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=108.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC---Ccc-ccC--CCceeeEEEEeC-----------------------CEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE---VVS-TIP--TIGFNVETVQYN-----------------------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~---~~~-~~~--t~~~~~~~~~~~-----------------------~~~~~ 64 (182)
....++|+++|+.++|||||+++|.+.. +.. +.+ |+...+....+. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999998543 222 333 665444333320 17899
Q ss_pred EEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHH
Q 030122 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVS 140 (182)
Q Consensus 65 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~ 140 (182)
+|||||+++|...+...+..+|++|+|+|+++..........+..+... ...|+++++||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999998887777788899999999998643111222222222111 33589999999999864221 1222
Q ss_pred HhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 141 EALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+.. .....++++.+||++|.|+++++++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 1124567999999999999999999988654
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=1.5e-21 Score=141.09 Aligned_cols=165 Identities=10% Similarity=0.029 Sum_probs=104.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc--c---cCCCceeeEEEEeCCEEEEEEECCCC--------CCChhhhhh
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--T---IPTIGFNVETVQYNNIKFQVWDLGGQ--------TSIRPYWRC 80 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~---~~t~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~ 80 (182)
....++|+++|.+|||||||+|++++..... . ..|.......+.+.+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4567999999999999999999999887654 1 23444556667778999999999996 333332222
Q ss_pred h----CCCCCEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh----cccccC--
Q 030122 81 Y----FPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL----ELHKIK-- 149 (182)
Q Consensus 81 ~----~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~----~~~~~~-- 149 (182)
+ ...+|++++|+|+++.... ..+..++..+... ...+.|+++++||+|+.+. ..++..... ......
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHc
Confidence 2 3899999999999853322 2334454444322 1247899999999999763 222221110 000111
Q ss_pred CCceEEEEecccC---CCCHHHHHHHHHHHHhcC
Q 030122 150 NRQWAIFKTCAIK---GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 ~~~~~~~~~Sa~~---~~~i~~~~~~l~~~i~~~ 180 (182)
...+.+|..++.. +.|+.++++.+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 1222333433332 689999999998887653
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.6e-21 Score=155.50 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=110.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCcc----------------ccCCCceeeEEEEeC-----CEEEEEEECCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVVS----------------TIPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~d~~g~~ 72 (182)
...+|+++|+.++|||||+++|+.. .... +..|+......+.+. .+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3468999999999999999999852 1110 112232223344442 3789999999999
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
+|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.... .+++.+.+... .....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~ 157 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP 157 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence 99998888899999999999999988888777775544 2 578999999999998654 33222222111 01111
Q ss_pred eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 153 WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
..++.+||++|.|++++|+++++.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 23899999999999999999998765
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=1.6e-21 Score=147.79 Aligned_cols=159 Identities=18% Similarity=0.074 Sum_probs=106.6
Q ss_pred eE-EEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCC---------ChhhhhhhCCC
Q 030122 18 VL-GFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFPN 84 (182)
Q Consensus 18 ~~-i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~ 84 (182)
++ |+++|++|||||||+|+|.+..... ..+|.++....+.+.+..+.+|||+|.-+ ++..+ ..+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 45 9999999999999999999877532 56666677778888888999999999632 22222 24678
Q ss_pred CCEEEEEEeCCCcc--hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH--HHHHhhcccccCCCceEEEEecc
Q 030122 85 TEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA--AVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|++++|+|++++. ..+....|...+ ......+.|+++|+||+|+.+..... .....+... ......+++.+||
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L-~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~SA 335 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEIL-REIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPISA 335 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHH-HHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEECBT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHH-HHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEEEC
Confidence 99999999998876 444444443332 32233578999999999997643111 111001000 0012345899999
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q 030122 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~i~~~~~~l~~~i~~ 179 (182)
++|.|++++++++.+.+..
T Consensus 336 ~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=1.1e-22 Score=159.80 Aligned_cols=152 Identities=15% Similarity=0.069 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCC--c------------------------------c--ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEV--V------------------------------S--TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~--~------------------------------~--~~~t~~~~~~~~~~~~ 60 (182)
...+||+++|.+|+|||||+++|++... . + +..|+......+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3468999999999999999999975411 0 0 1234445555666688
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHH-----HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT-----AKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~ 135 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++..++.. ...+...+... ....|+++|+||+|+.+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999998654322 11111112221 12357999999999976321
Q ss_pred --HHHHHHhh----cccccCCCceEEEEecccCCCCHHH
Q 030122 136 --DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 136 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (182)
.+++...+ .........++++++||++|+|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222221 1111222367899999999999975
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.2e-21 Score=156.55 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=107.8
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCC--Cc---------c-------ccCCCceeeEEEEeC-----CEEEEEEECCCCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGE--VV---------S-------TIPTIGFNVETVQYN-----NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~--~~---------~-------~~~t~~~~~~~~~~~-----~~~~~i~d~~g~~~ 73 (182)
-.+|+++|+.++|||||+++|+... .. + +..|+......+.|. .+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3589999999999999999998622 11 0 111222233344443 48899999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccccCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKIKN 150 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~~~~ 150 (182)
|...+..+++.+|++|+|+|+++..+.+....|.... . .++|+++|+||+|+.+.... +++.+.++..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~---- 154 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID---- 154 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC----
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999987777777765544 2 47899999999999875422 2233333221
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
...++.+||++|.|++++++++.+.+..
T Consensus 155 -~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 -ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp -CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred -cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1138999999999999999999987653
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=6.4e-23 Score=160.18 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=100.6
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCccccCCCc----eeeEEEEeCCEEEEEEECCC--------CCCChhhhh
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGG--------QTSIRPYWR 79 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g--------~~~~~~~~~ 79 (182)
.+.....+|+++|.+|||||||+|+|++..+.....+.| .....+.+.+..+.+||||| ++.++..+.
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 344456799999999999999999999877654333333 22333334678999999999 455666778
Q ss_pred hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEec
Q 030122 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++++|++++|+|..+..+ ....|+..++.. .++|+++|+||+|+.... ....+.+.+ ..-..+.+|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----g~~~~~~iS 165 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----GFGEPYPIS 165 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG-----SSSSEEECC
T ss_pred hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc-----CCCceEEee
Confidence 88899999999999876433 333444454443 689999999999987431 111111111 111267999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 030122 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~i~~~~~~l~~~i~ 178 (182)
|++|.|+.++++++.+.+.
T Consensus 166 A~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGG
T ss_pred cccccchHHHHHHHHhhcc
Confidence 9999999999999987764
No 162
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=139.01 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=99.1
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcCCCcc-c----cCCCceeeEEEEeCCEEEEEEECCCCCC-----------Ch
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTS-----------IR 75 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~i~d~~g~~~-----------~~ 75 (182)
.+....++|+++|++|+|||||+++|++..+.. . ..|.......+.+.+..+.+|||||... +.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345567899999999999999999999887754 2 2334455566777889999999999542 33
Q ss_pred hhhhhhCCCCCEEEEEEeCCCcchH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhh---cccccCCC
Q 030122 76 PYWRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---ELHKIKNR 151 (182)
Q Consensus 76 ~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~---~~~~~~~~ 151 (182)
..+..+++++|++++|+|+++.... .....++....... ...|+++|+||+|+......++..... ........
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 3455566789999999998765442 12222222222211 346999999999987643322111100 00000111
Q ss_pred ceEEEEecccC-----CCCHHHHHHHHHHHHhc
Q 030122 152 QWAIFKTCAIK-----GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~Sa~~-----~~~i~~~~~~l~~~i~~ 179 (182)
+..++.++... ..++.++|..+.+.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 11255555443 36899999988887754
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=9.8e-22 Score=152.59 Aligned_cols=152 Identities=15% Similarity=0.027 Sum_probs=102.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCC---cc---------------------------------ccCCCceeeEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEV---VS---------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~---~~---------------------------------~~~t~~~~~~~~~ 57 (182)
....++|+++|++++|||||+++|++... .. +.-|+......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999986431 00 0112223344455
Q ss_pred eCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC--
Q 030122 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-- 135 (182)
.....+.+|||||+++|...+..+++.+|++|+|+|+++.... ....++..+... ...|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 5788999999999999998888889999999999999886532 233333333221 2247999999999976321
Q ss_pred HHHHHHhh----cccccCCCceEEEEecccCCCCHHHH
Q 030122 136 DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
.+++.... .........++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11121111 11110123478999999999999874
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=5.2e-23 Score=161.00 Aligned_cols=152 Identities=17% Similarity=0.088 Sum_probs=107.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-c--cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 92 (182)
+..+|+++|++++|||||+++|.+..+.. . ..|..+....+.+.+..+.+|||||++.|..++..++..+|++++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 45689999999999999999998755433 2 22333333344456678999999999999999999999999999999
Q ss_pred eCCCc---chHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc-c-cCC--CceEEEEecccCCCC
Q 030122 93 DSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-K-IKN--RQWAIFKTCAIKGEG 165 (182)
Q Consensus 93 d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~Sa~~~~~ 165 (182)
|+++. .+.+.+ ..+. ..++|+++++||+|+.+... +.+...+... . ... ..++++++||++|.|
T Consensus 83 da~~g~~~qT~e~l----~~~~----~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 83 AADDGVMPQTIEAI----QHAK----AAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp ETTTBSCTTTHHHH----HHHH----HTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred ecccCccHHHHHHH----HHHH----hcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 99873 443332 2221 15789999999999975321 1111111111 0 111 247899999999999
Q ss_pred HHHHHHHHHHH
Q 030122 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 i~~~~~~l~~~ 176 (182)
++++|+++...
T Consensus 154 I~eLle~I~~~ 164 (501)
T 1zo1_I 154 IDELLDAILLQ 164 (501)
T ss_dssp CTTHHHHTTTT
T ss_pred cchhhhhhhhh
Confidence 99999998653
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=1e-21 Score=151.27 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=110.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC--------CCcc------------ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
....++|+++|++++|||||+++|.+. .+.. ...|+......+...+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 345689999999999999999999873 2211 12233333334455778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-H----HHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-~----~~~~~~~~~~ 147 (182)
|...+..+++.+|++|+|+|+++.... ....++..+.. .++| +++++||+|+.+.... + ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888899999999999999886543 33445544433 4678 8999999999852211 1 1222221111
Q ss_pred cCCCceEEEEecccCCCC------------------HHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------i~~~~~~l~~~i 177 (182)
+....++++++||++|.| +.++++.+.+.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 222346799999999987 777777776654
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=3.9e-22 Score=146.24 Aligned_cols=157 Identities=12% Similarity=0.106 Sum_probs=89.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--c-------cCCCceeeEEEEe----CCEEEEEEECCCCC-------CC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--T-------IPTIGFNVETVQY----NNIKFQVWDLGGQT-------SI 74 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~-------~~t~~~~~~~~~~----~~~~~~i~d~~g~~-------~~ 74 (182)
...++|+++|.+|+|||||+|+|++..... + .+|+++....... ..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 346899999999999999999988766433 3 6777766665554 23699999999973 23
Q ss_pred hhhh-------hhhCC-------------CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 75 RPYW-------RCYFP-------------NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+. ..|+. ++|+++++++.+.......-..++..+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH
Confidence 3332 22222 37899999987653222222334444422 78999999999987432
Q ss_pred CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
........+ ...+...+++++.+|+++++|+.++++++.+.+
T Consensus 161 e~~~~~~~i-~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-HHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHH-HHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 222221111 111223445689999999999999999987653
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.4e-22 Score=158.18 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=103.9
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc----------------------------------ccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|.+|+|||||+++|++....- ...|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998653211 1224445556667788
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ ......+... .. ....|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999998631 11 1111111111 21 1234699999999998632
Q ss_pred C--HHHHHHh----hcccccCCCceEEEEecccCCCCHHHH
Q 030122 135 D--DAAVSEA----LELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
. .+++... +.........++++.+||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 1222211 111112223568999999999999875
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=6.8e-22 Score=151.86 Aligned_cols=157 Identities=16% Similarity=0.048 Sum_probs=107.9
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC-------CCcc------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG-------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+++|+++|++++|||||+++|.+. .+.. +..|++.....+...+..+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 589999999999999999999873 1110 122333333334446789999999999999888
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-----HHHHHhhcccccCCC
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-----AAVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-----~~~~~~~~~~~~~~~ 151 (182)
+..+++.+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+.+.... +++.+.+....+...
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88899999999999999886543333 33333322 4678 7899999999752211 122222221122223
Q ss_pred ceEEEEecccCCCC----------HHHHHHHHHHHHh
Q 030122 152 QWAIFKTCAIKGEG----------LFEGMDWLSNTLK 178 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~----------i~~~~~~l~~~i~ 178 (182)
.++++++||++|.| +.++++.+.+.+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 46799999999764 8889988887653
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.86 E-value=2.1e-21 Score=143.76 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCC----------------------Ccee-----------
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPT----------------------IGFN----------- 52 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~----------- 52 (182)
+....++|+++|.+|||||||+++|++..+.+ ..|+ ....
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 34456799999999999999999999988642 1232 0000
Q ss_pred ----------e--EEE--Ee-CCEEEEEEECCCCC-------------CChhhhhhhCCCCCEEE-EEEeCCCcchHHHH
Q 030122 53 ----------V--ETV--QY-NNIKFQVWDLGGQT-------------SIRPYWRCYFPNTEAVI-YVVDSSDTDRIQTA 103 (182)
Q Consensus 53 ----------~--~~~--~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~ 103 (182)
. ..+ .. ....+.+|||||.. .+..++..++..++.++ +|+|.++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0 011 11 24789999999964 23456777888888776 79998876544443
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 104 KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
..++..+. ..+.|+++|+||+|+.+... ..+..... .........+++.+||++|.|++++++++.+.
T Consensus 182 ~~~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 34444432 25789999999999976432 12221110 01111123578999999999999999998763
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=5e-21 Score=149.36 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=103.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC--CCc--------------------------------cccCCCceeeEEEEeCCE
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG--EVV--------------------------------STIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|.+++|||||+++|++. .+. .+..|+......+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 4689999999999999999999864 111 023455566667777889
Q ss_pred EEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHH---HHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCC
Q 030122 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQ---TAKEEFHAILEEEELKGAV-ALIFANKQDLPGAL 134 (182)
Q Consensus 62 ~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~ 134 (182)
.+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.+..
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTC
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCC
Confidence 9999999999999999999999999999999998652 221 22222222222 3555 99999999997421
Q ss_pred C--HHHHHHh----hcccccCCCceEEEEecccCCCCHHHH
Q 030122 135 D--DAAVSEA----LELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 169 (182)
. .+++... +....+....++++++||++|.|+.+.
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1122111 111111112467999999999998753
No 171
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.84 E-value=6.1e-20 Score=145.21 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=84.2
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCC--Cc-----------------------cccCCCceeeEEEEeCCEEEEEEECC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGE--VV-----------------------STIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~d~~ 69 (182)
....+|+++|++|+|||||+++|+... .. .+..|+......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 346799999999999999999998631 10 01122223344566788999999999
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
|+.+|...+..++..+|++|+|+|+++...-. ...++..+ ...++|+++++||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCSC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCcccc
Confidence 99999988888999999999999998764322 22222222 22578999999999997653
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=4.2e-22 Score=155.79 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=90.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc--CCCc--------------------------------cccCCCceeeEEEEeCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM--GEVV--------------------------------STIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~--~~~~--------------------------------~~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++++|||||+++|+. +.+. .+..|++.....+.+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 2111 13345555555667788
Q ss_pred EEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCC-C
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~-~ 135 (182)
..+.+|||||+++|...+..+++.+|++|+|+|+++.. +|+...++...+... ...++| +++++||+|+.... .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999998888899999999999998752 222111121111111 124677 99999999996422 1
Q ss_pred H---H----HHHHhhccc-ccC-CCceEEEEecccCCCCHHHHH
Q 030122 136 D---A----AVSEALELH-KIK-NRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 136 ~---~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~~~ 170 (182)
. + ++...+... .+. ...++++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1 122211111 111 125789999999999998755
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=1.2e-19 Score=147.80 Aligned_cols=118 Identities=19% Similarity=0.029 Sum_probs=90.3
Q ss_pred CCCcceeEEEEEecCCCChHHHHHHhhcC--CCc-------------------cccCCCceeeEEEEeCCEEEEEEECCC
Q 030122 12 HPPCTHVLGFSFFIDNFGNLCDTDRLQMG--EVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 12 ~~~~~~~~i~viG~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g 70 (182)
.+.....+|+++|++|+|||||+++|+.. .+. .+..|+......+.+.+..+++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 33456679999999999999999999831 110 134555666667777889999999999
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+|...+..+++.+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccCC
Confidence 99999999999999999999999998887776655543 322 479999999999998653
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.7e-20 Score=157.02 Aligned_cols=160 Identities=17% Similarity=0.089 Sum_probs=108.3
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCC-------Cc--------c----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGE-------VV--------S----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~-------~~--------~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
.....++|+++|++++|||||+++|.+.. +. . ...|+......+...+..+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34557899999999999999999998631 00 0 11222222334445778999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCCCCCH-----HHHHHhhcccc
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-----AAVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~~~~~-----~~~~~~~~~~~ 147 (182)
|...+..+++.+|++|+|+|+++....+ ...++..+.. .++| +++++||+|+.+.... +++.+.+....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888999999999999998764322 3334433322 3678 7899999999853211 12222222222
Q ss_pred cCCCceEEEEecccCC--------CCHHHHHHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKG--------EGLFEGMDWLSNTL 177 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~i 177 (182)
+....++++++||++| .|+.++++.+.+.+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 2223578999999999 46888888887654
No 175
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=146.61 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=82.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--c--------cCCCceeeEEEEe--C--CEEEEEEECCCC-------CCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--T--------IPTIGFNVETVQY--N--NIKFQVWDLGGQ-------TSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~--------~~t~~~~~~~~~~--~--~~~~~i~d~~g~-------~~~ 74 (182)
..++|+++|++|+|||||+++|++..... . .+|+++....+.+ . ...+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35799999999999999999987654322 2 2455544433322 2 347999999998 667
Q ss_pred hhhhh-------hhCCCC-------------CEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 75 RPYWR-------CYFPNT-------------EAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 75 ~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
+.++. .|+..+ |+++|+++.+ ..++..+. .++..+ ..++|+++|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence 66665 444432 3455555432 34454444 343333 257899999999999753
Q ss_pred CCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
....... ......+...+++++++||++|.+ ++.|.++.+.+.+
T Consensus 190 ~ev~~~k-~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 190 KERERLK-KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHH-HHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 2221111 112223344567899999999999 8888888887754
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=5.6e-20 Score=129.40 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCcee--eEEEEeCCEEEEEEECCCCCCC----------hhhhh
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI----------RPYWR 79 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~~----------~~~~~ 79 (182)
+.....+|+++|++|||||||++++++..+.. ..++.|.. ...+.+.+ .+.+||+||.... +....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 33455799999999999999999999877433 45555522 22333333 6789999997532 22222
Q ss_pred hhC---CCCCEEEEEEeCCCcchHHH--HHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH----HHHHHhhcccccCC
Q 030122 80 CYF---PNTEAVIYVVDSSDTDRIQT--AKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALELHKIKN 150 (182)
Q Consensus 80 ~~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~----~~~~~~~~~~~~~~ 150 (182)
.++ ..++++++++|++++.+... +..|+ . ..++|+++++||+|+...... ..+...... ..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----V---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----H---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----H---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cC
Confidence 333 57899999999988766432 22222 2 157899999999998753211 111111111 12
Q ss_pred CceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..+.++++|++++.|++++++++.+.+.+
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 34678999999999999999999887654
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.82 E-value=4.7e-22 Score=159.20 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=82.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC-------------------------------Cc---cccCCCceeeEEEEeC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE-------------------------------VV---STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~-------------------------------~~---~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+... .. .+..|+......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4457899999999999999999996421 00 0122333444445556
Q ss_pred CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc---hH---HHHHHHHHHHHhccCCCCCe-EEEEeeCCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D~~~ 132 (182)
+..+.+|||||+++|...+..++..+|++|+|+|+++.. .+ ......+..+.. .++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 789999999999999888888899999999999998532 11 111111122212 3555 999999999975
Q ss_pred CCC--HH----HHHHhh-cccccCCCceEEEEecccCCCCHH
Q 030122 133 ALD--DA----AVSEAL-ELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 133 ~~~--~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (182)
... .+ ++...+ ....+....++++.+||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 221 12 222222 112223346789999999999998
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=9.9e-19 Score=141.85 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=84.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCc--------------c-------ccCCCceeeEEEEeCCEEEEEEECCCCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 74 (182)
...+|+++|+.|+|||||+++|++.... + ...++......+.+..+.+++|||||+.+|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3468999999999999999999843221 0 122333444556668899999999999999
Q ss_pred hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 75 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
...+..+++.+|++++|+|+++....+. ..++..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888999999999999999877654333 244444433 478999999999987
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=8.2e-19 Score=134.76 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=110.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCCCc--c-ccCCCceeeEEEEeCC-EEEEEEECCCCCCCh----hh---hhhhCCCCCE
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEVV--S-TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIR----PY---WRCYFPNTEA 87 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~----~~---~~~~~~~~~~ 87 (182)
.|+++|++|||||||++.+.+.... . ...|.......+.+.. ..+.+||++|..... .+ .......++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 5899999999999999999987532 1 2334444555555553 789999999975321 11 2223467999
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHHhcc-CCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCH
Q 030122 88 VIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (182)
+++++|++ ...+..+..+..++.... .....|.++++||+|+......+.+.+.+ .....+++.+||++++|+
T Consensus 239 lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 239 LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGL 312 (416)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTH
T ss_pred hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCH
Confidence 99999998 667788877777765542 12468999999999987541112222222 223456999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030122 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~~~~~l~~~i~~~ 180 (182)
+++++++.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 313 PALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=1.7e-18 Score=141.03 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=89.0
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhc--CCCc-------------------cccCCCceeeEEEEeCCEEEEEEECCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQM--GEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 71 (182)
+.....+|+++|.+|+|||||+++|+. +.+. .+..|+......+.+.+..+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 344567999999999999999999984 2211 1233444455567778899999999999
Q ss_pred CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
.+|...+..+++.+|++|+|+|+++..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 999998888999999999999999887776655543 3333 47899999999999865
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=4.7e-19 Score=129.00 Aligned_cols=117 Identities=10% Similarity=0.028 Sum_probs=82.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---c-cCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhhC--------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF-------- 82 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~-------- 82 (182)
...++|+++|.+|+|||||+++|++..... + ..|.......+.+.+..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 357899999999999999999999887533 2 2244455566677889999999999987754433333
Q ss_pred -CCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccC-CCCCeEEEEeeCCCCCC
Q 030122 83 -PNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 -~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~ 132 (182)
.++|++++|++++... +... ..|+..+..... ....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2789999999987654 3222 344444443211 12349999999999853
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.79 E-value=3.6e-18 Score=139.25 Aligned_cols=115 Identities=14% Similarity=-0.016 Sum_probs=86.6
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCC--Cc-------------------cccCCCceeeEEEEeCC-------EEEEE
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGE--VV-------------------STIPTIGFNVETVQYNN-------IKFQV 65 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i 65 (182)
.....+|+++|+.|+|||||+++|+... +. .+..|+......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4455789999999999999999997431 11 02234434444555655 89999
Q ss_pred EECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 66 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|||||+.+|...+..+++.+|++|+|+|+++....+....| ..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999987655544433 33322 57899999999998764
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=4.7e-19 Score=144.32 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=106.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCc-eee--------EEEEe--------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIG-FNV--------ETVQY-------------------------- 58 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~--------~~~~~-------------------------- 58 (182)
..++|+|+|.+|+|||||+|+|++....+ ..|+.. +.. .+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999877544 233331 000 01111
Q ss_pred --------------------CC----EEEEEEECCCCCC---ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHH
Q 030122 59 --------------------NN----IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAIL 111 (182)
Q Consensus 59 --------------------~~----~~~~i~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 111 (182)
.. ..+.+|||||... ....+..++.++|++++|+|++++.+..+...|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l- 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI- 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-
Confidence 00 3689999999543 4556677889999999999999887777665553333
Q ss_pred hccCCCCCeEEEEeeCCCCCCCC-----CHHH-------HHHhh---cccccC-----CCceEEEEeccc----------
Q 030122 112 EEEELKGAVALIFANKQDLPGAL-----DDAA-------VSEAL---ELHKIK-----NRQWAIFKTCAI---------- 161 (182)
Q Consensus 112 ~~~~~~~~p~i~v~nK~D~~~~~-----~~~~-------~~~~~---~~~~~~-----~~~~~~~~~Sa~---------- 161 (182)
.. .+.|+++|+||+|+.... ..++ +.... ...... ....+++.+||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 22 367899999999986432 1111 11110 001111 123459999999
Q ss_pred ----CCCCHHHHHHHHHHHHhc
Q 030122 162 ----KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ----~~~~i~~~~~~l~~~i~~ 179 (182)
++.|++++++++.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887653
No 184
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=123.19 Aligned_cols=170 Identities=19% Similarity=0.196 Sum_probs=114.5
Q ss_pred cCCCCcceeEEEEEecC-CCChHHHHHHhhcCC-Ccc-------ccCCCc--eee-----EEEEe----C----------
Q 030122 10 TSHPPCTHVLGFSFFID-NFGNLCDTDRLQMGE-VVS-------TIPTIG--FNV-----ETVQY----N---------- 59 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~-~~GKssl~~~l~~~~-~~~-------~~~t~~--~~~-----~~~~~----~---------- 59 (182)
++--+..++|++++||. ..=+.+|+.++...+ ..+ ....+| +.. +.+.. .
T Consensus 9 ~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~ 88 (227)
T 3l82_B 9 HSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAR 88 (227)
T ss_dssp SCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---------
T ss_pred HHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhh
Confidence 34456778899999996 666779999999765 221 111222 111 12221 0
Q ss_pred --C----EEEEEE------ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHH---HHHHhccC-CCCCeEEE
Q 030122 60 --N----IKFQVW------DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEE-LKGAVALI 123 (182)
Q Consensus 60 --~----~~~~i~------d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~p~i~ 123 (182)
. -++-.. +.+||+.++++|..||+++|++|||+|.++.+.++ ...-+ ..++.... ..+.|++|
T Consensus 89 ~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLV 167 (227)
T 3l82_B 89 EEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLV 167 (227)
T ss_dssp ----------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEE
T ss_pred hhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEE
Confidence 0 011122 34489999999999999999999999999987655 43333 33333332 47899999
Q ss_pred EeeCC-CCCCCCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 124 FANKQ-DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 124 v~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
++||. |++.+....++.+.+.+... .+...+..|||++|+|+.+.++||.+.+..++
T Consensus 168 lANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp EEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred EeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 99995 78888889999999998877 48899999999999999999999998876653
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.78 E-value=1.7e-18 Score=129.15 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=97.0
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCC-cee---------------------------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTI-GFN--------------------------------- 52 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~-~~~--------------------------------- 52 (182)
....++|+|+|.+|||||||+|+|++..+.+ ..|+. ...
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3455799999999999999999999887622 11100 000
Q ss_pred -------------------eEEEEe---CCEEEEEEECCCCCC-------------ChhhhhhhCCCCCEEEEEEeCCCc
Q 030122 53 -------------------VETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 53 -------------------~~~~~~---~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~ 97 (182)
...+.+ ....+.+|||||... +...+..++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 001111 346799999999754 344567788899999999997433
Q ss_pred chH-HHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccC---CCCHHHHHHH
Q 030122 98 DRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK---GEGLFEGMDW 172 (182)
Q Consensus 98 ~s~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~ 172 (182)
... .....+...+ . ..+.|+++|+||+|+.+... ..+..... .......-+++..+|+.+ +.|+.++++.
T Consensus 181 ~~~~~~~~~i~~~~-~---~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQLAKEV-D---PEGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHHHHHHH-C---SSCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHHHHHHh-C---CCCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 1111222222 2 25789999999999976433 12222110 011111223444555556 7899999998
Q ss_pred HHHHHhc
Q 030122 173 LSNTLKS 179 (182)
Q Consensus 173 l~~~i~~ 179 (182)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8776653
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=1.1e-17 Score=122.24 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=80.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc---c-cCCCceeeEEEEeCCEEEEEEECCCCCCChhhh-------hhh--
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW-------RCY-- 81 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~-- 81 (182)
...++|+++|.+|+|||||+++|++..+.. . ..|.......+...+..+.+|||||...+.... ..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357899999999999999999999887643 2 222223334455588999999999987664321 112
Q ss_pred CCCCCEEEEEEeCCCcchHHHH-HHHHHHHHhccC-CCCCeEEEEeeCCCCCCC
Q 030122 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~~ 133 (182)
...+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 3478999999998653 33322 355555543311 112699999999998753
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=9.6e-19 Score=129.72 Aligned_cols=130 Identities=18% Similarity=0.073 Sum_probs=101.5
Q ss_pred HHHHHhhcCCCc-c-ccCCCceeeEEEEe-CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHH
Q 030122 32 CDTDRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEF 107 (182)
Q Consensus 32 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 107 (182)
+|+.+++.+.|. . +.||+|.... +.. .+..+.+||+ +++++.+++.+++++|++|+|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688889988887 5 8899994333 333 2237999999 8999999999999999999999999987 688888898
Q ss_pred HHHHhccCCCCCeEEEEeeCCCCCCCCCHH---HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 108 HAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 108 ~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..+.. .++|+++|+||+|+.+....+ ++.+.+. .. ++++++||++|.|++++|.++.
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhc
Confidence 87643 579999999999997532211 2222221 12 5699999999999999998875
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=4.8e-18 Score=128.99 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCc--------------------------------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIG-------------------------------------------- 50 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~-------------------------------------------- 50 (182)
.-.+|+|+|++|||||||+++|.+..+.+ ...+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34499999999999999999999977633 111110
Q ss_pred --------e--eeEEEEe---CCEEEEEEECCCCCCC-------------hhhhhhhCCCCCEEEEEEeCCCcchH-HHH
Q 030122 51 --------F--NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVVDSSDTDRI-QTA 103 (182)
Q Consensus 51 --------~--~~~~~~~---~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~ 103 (182)
+ ....+.+ ....+.+|||||..++ ..+...|+.++|++|+|+|..+.+.. ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0 0001111 3457899999998776 56777889999999999987654432 222
Q ss_pred HHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHH
Q 030122 104 KEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 173 (182)
..+...+ ...+.|+++|+||+|+.+... ..++... .......+|+.+|+.++.++++.+..+
T Consensus 193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHH
Confidence 2222222 235789999999999975432 1222211 122334569999999988887765543
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=3e-18 Score=129.79 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=95.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCC---------------------------------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPT--------------------------------------- 48 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t--------------------------------------- 48 (182)
...++|+|+|.+|||||||+++|++..+.+ ..|+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 345799999999999999999999988642 1122
Q ss_pred ----Ccee--eEEEE--e-CCEEEEEEECCCCCC-------------ChhhhhhhCCCCCEEEE-EEeCCCcchHHHHHH
Q 030122 49 ----IGFN--VETVQ--Y-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIY-VVDSSDTDRIQTAKE 105 (182)
Q Consensus 49 ----~~~~--~~~~~--~-~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 105 (182)
.++. ...+. . ....+.+|||||... ++.+...|+.+++.+|+ |.|.+....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000 00111 1 246899999999532 33466667776665555 555543222122222
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++..+ ...+.|+++|+||+|+.+... ..++.... .........+++.+||+++.|++++++++.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33333 225789999999999975432 12222111 1111122346889999999999999998875
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=2.5e-18 Score=131.68 Aligned_cols=80 Identities=21% Similarity=0.071 Sum_probs=46.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEE---------------------EeC---CEEEEEEECCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETV---------------------QYN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~---------------------~~~---~~~~~i~d~~g 70 (182)
++|+++|.+|+|||||+|+|++..... ...|........ .+. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 489999999999999999999876321 222333222211 111 36899999999
Q ss_pred CCC----Chhhhh---hhCCCCCEEEEEEeCCCc
Q 030122 71 QTS----IRPYWR---CYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 71 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 97 (182)
... .+.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 754 222322 456899999999999875
No 191
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=121.57 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHH---HHHhccC-CCCCeEEEEeeC-CCCCCCCCHHHHHHh
Q 030122 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFH---AILEEEE-LKGAVALIFANK-QDLPGALDDAAVSEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~p~i~v~nK-~D~~~~~~~~~~~~~ 142 (182)
.+||+..+++|..||+++|++|||+|+++.++++ ...-+. .++.... ..+.|++|++|| .|++.+....++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 5689999999999999999999999999998765 333222 3333322 378999999996 689988899999999
Q ss_pred hcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcCC
Q 030122 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~~ 181 (182)
+++.... +...+..|||++|+|+.+.++|+.+.+..++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 9988774 7889999999999999999999999887653
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=3e-16 Score=124.63 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=85.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC---------------------CCcc----ccCCCceeeEEEEeCCEEEEEEECCCCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG---------------------EVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~---------------------~~~~----~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 73 (182)
+|+++|+.++|||||..+|+.. ++.+ +.-|+......+.|++..++++||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999621 1111 34455555667888999999999999999
Q ss_pred ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 74 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
|.......++-+|++|+|+|+...-.-+....| +.... .++|.++++||+|.....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchhcc
Confidence 999888889999999999999876655555544 33333 589999999999987653
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=9.2e-18 Score=124.38 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcC-CCcc-c--------cCCCceeeEEEEe----CCEEEEEEECCCC-------CC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMG-EVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------TS 73 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~-~~~~-~--------~~t~~~~~~~~~~----~~~~~~i~d~~g~-------~~ 73 (182)
...++|+++|+.|+|||||+++|.+. .+.. . .++.+.....+.. ....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998875 3322 1 1233322222222 3468999999998 55
Q ss_pred Chhhhh-------hhCCC-------------CCEEEEEEeCCCcchHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 74 IRPYWR-------CYFPN-------------TEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
++.+.. .++.+ +++++++.+++. .+++... .++..+ ..+.|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCC
Confidence 555443 33322 344555555432 1233322 222222 14679999999999875
Q ss_pred CCCHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
...... ........++..+++++++||++| |++++|.++.+.+.+
T Consensus 170 ~~e~~~-~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERER-LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHH-HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 321111 111111222333467999999999 999999999988764
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=2.2e-17 Score=125.02 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA- 137 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~- 137 (182)
.++.+.+|||||... ........+|++++|+|....+.++.+. ....+.|+++|+||+|+.......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 467899999999432 2333458899999999987655442221 112356999999999986432221
Q ss_pred ---HHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 ---AVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+..... .....+++.+||++|.|++++++++.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 22222111111 123457999999999999999999988764
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=1.5e-16 Score=132.05 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=87.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC------------CCcc-------ccCCCceeeEEEEeC---------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG------------EVVS-------TIPTIGFNVETVQYN--------------- 59 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~------------~~~~-------~~~t~~~~~~~~~~~--------------- 59 (182)
+....+|+++|++|+|||||+++|+.. .+.+ +..|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 345578999999999999999999864 1111 223444334444443
Q ss_pred -CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 60 -NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 -~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
++.+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|.... . .++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999988888766554332 2 578999999999986
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=1e-16 Score=127.46 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=81.4
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCc----cccCCCceeeEEEEe-------------------------------
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVV----STIPTIGFNVETVQY------------------------------- 58 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~------------------------------- 58 (182)
....++|+|+|.+|+|||||+|+|++..+. ...|+... ...+..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 345689999999999999999999998763 12222211 000000
Q ss_pred --------CC---EEEEEEECCCCCC-----------ChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCC
Q 030122 59 --------NN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 59 --------~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
.. ..+.+|||||... +...+..++..+|++++|+|+++....+....++..+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 00 3589999999765 345566678899999999999876555555666555532
Q ss_pred CCCeEEEEeeCCCCCCCC
Q 030122 117 KGAVALIFANKQDLPGAL 134 (182)
Q Consensus 117 ~~~p~i~v~nK~D~~~~~ 134 (182)
.+.|+++|+||+|+....
T Consensus 217 ~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp CGGGEEEEEECGGGSCHH
T ss_pred cCCCEEEEEECCCccCHH
Confidence 468999999999998643
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=122.97 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=75.3
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc-c--------cCCCceeeEEEEe----CCEEEEEEECCCCCCCh------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~i~d~~g~~~~~------ 75 (182)
.-.++|+++|++|||||||++.|++..+.. . .+|.+.....+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 345789999999999999999999876532 1 2232221111111 23578999999976531
Q ss_pred -hh------------------hhhhCCCCCEEEEEEeCCCc-chHHHHH-HHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 76 -PY------------------WRCYFPNTEAVIYVVDSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 76 -~~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
.+ ...++.++++.+++|+.... .++.... .|+..+. .+.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence 11 12344556655555554432 3444443 4555552 378999999999987532
Q ss_pred CHHHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHH
Q 030122 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 176 (182)
...... ......+...+++++++|+++++++.++|..+...
T Consensus 184 ev~~~k-~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 184 ECQQFK-KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHH-HHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHH-HHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 221111 11111222234569999999999999988777654
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=3.5e-15 Score=112.47 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=59.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCC-----------------EEEEEEECCCCCCChh
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~~~ 76 (182)
.++|+++|.+|+|||||+|+|.+..... ...|++.+...+.+.+ ..+.+||+||..++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999876422 3346665555555533 5799999999987642
Q ss_pred ----h---hhhhCCCCCEEEEEEeCCC
Q 030122 77 ----Y---WRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 77 ----~---~~~~~~~~~~~i~v~d~~~ 96 (182)
+ +..+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2335689999999999975
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.66 E-value=8.7e-17 Score=113.95 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=91.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-------ccCCC----------ceeeEEE------------------EeCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-------TIPTI----------GFNVETV------------------QYNN 60 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 60 (182)
...+|+++|.+|||||||+++|....... ..+.. +.....+ ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 34689999999999999999998642111 01100 1111111 1134
Q ss_pred EEEEEEECCCCCCChhhhhhhC-CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCHH
Q 030122 61 IKFQVWDLGGQTSIRPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~~ 137 (182)
..+.+|||+|+... +.++ ...+.+++|+|+++.... ...+ ... .+.|+++|+||+|+.+. ...+
T Consensus 109 ~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHHH
Confidence 57889999985211 1111 357889999998765421 1111 111 25789999999998642 2334
Q ss_pred HHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
++...+... ....+++++||++|.|++++|+++.+.+...
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 443333211 2345799999999999999999999877643
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=119.10 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.+..+.++||+|.... .......+|.+++|+|++.....+.+.. .+ .+.|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 4678899999995322 2344678999999999886543322111 11 34688999999998642111
Q ss_pred --HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 137 --AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 137 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
..+...+..... .....+++.+||++|.|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 112222211111 11235789999999999999999998765
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=8.5e-16 Score=111.57 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=69.9
Q ss_pred EEEEEEECCCCCCChhhhh------hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCC
Q 030122 61 IKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~i~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~ 134 (182)
+.+.+|||||......... ..+.. +++++++|.....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999865433211 24466 8999999876443322222211111111111468999999999987532
Q ss_pred CHHHHHHhhc--------------------------ccccCCCceEEEEecccCCCCHHHHHHHHHHHHhc
Q 030122 135 DDAAVSEALE--------------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~ 179 (182)
..+++.+.+. ... .....+++++||++|.|++++++++.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHH-hcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 2211111110 000 0122368999999999999999999987653
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.61 E-value=4.2e-16 Score=117.43 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHH-
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA- 137 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~- 137 (182)
.++.+.++||||...... .....+|++++|+|.+..+.++.+.. . ..+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---G------LMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---H------HHHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---h------hhcccCEEEEECCCCCChHHHHH
Confidence 467899999999654332 24578999999999875533211110 0 0246889999999987532222
Q ss_pred ---HHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 138 ---AVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
++...+..... .....+++.+||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111110 112357899999999999999999988654
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=1.1e-15 Score=123.50 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=109.0
Q ss_pred EEEEEecCCCChHHHHHHhhc--CCCcc-------------------ccCCCceeeEEEEeCCEEEEEEECCCCCCChhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM--GEVVS-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 77 (182)
+|+++|+.++|||||..+|+. +.... +.-|+......+.|++..++++|||||.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 599999999999999999873 11110 223344444556778899999999999999998
Q ss_pred hhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH---HHHHHhhcccc-------
Q 030122 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHK------- 147 (182)
Q Consensus 78 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~---~~~~~~~~~~~------- 147 (182)
....++-+|++|+|+|+...-.-+....| +.... .++|.++++||+|....... +++.+.+....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 88899999999999999865433333323 33333 47899999999998765432 22322221100
Q ss_pred -------------------------------------------------cCCCceEEEEecccCCCCHHHHHHHHHHHH
Q 030122 148 -------------------------------------------------IKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 148 -------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
....-.|++..||.++.|++.+++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 011235788999999999999999988754
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.59 E-value=1e-14 Score=118.91 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=97.5
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCC-------------------------------------------
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTI------------------------------------------- 49 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~------------------------------------------- 49 (182)
....+|+|+|.+++||||++|+|++..+-+ ..++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 345699999999999999999999987632 11111
Q ss_pred -----cee--eEEEE--e-CCEEEEEEECCCCCCC-------------hhhhhhhC-CCCCEEEEEEeCCCcchHHHHHH
Q 030122 50 -----GFN--VETVQ--Y-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 50 -----~~~--~~~~~--~-~~~~~~i~d~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 105 (182)
++. ...+. . ....+.++||||-... ..+...|+ ..+|++++|+|++....-.+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000 00111 1 3345889999995431 12333344 47899999999986533233223
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCCCCCCCH-HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHH
Q 030122 106 EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 175 (182)
++..+. ..+.|+++|+||+|+.+.... ..+... ..........+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 333332 257899999999999754321 222211 11111123357889999999999999988876
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.55 E-value=1.6e-16 Score=112.91 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=85.2
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc-ccCCCceee--------------EEEEe--C-------------------
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS-TIPTIGFNV--------------ETVQY--N------------------- 59 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--------------~~~~~--~------------------- 59 (182)
...+|+++|.+|||||||+++|+...+.. +.++++.+. ..+.+ .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 35799999999999999999999765433 333333111 11111 0
Q ss_pred -CEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC--CCH
Q 030122 60 -NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDD 136 (182)
Q Consensus 60 -~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~--~~~ 136 (182)
...+.++|++|.-... ..+-...+..+.++|......... .+... .+.|.++|+||+|+.+. ...
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~------~~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGI------MKTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHH------HTTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhH------hhcCCEEEEeccccCchhHHHH
Confidence 1145555555521110 111123455566666432211100 00011 24678999999998642 233
Q ss_pred HHHHHhhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHhcC
Q 030122 137 AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~~~ 180 (182)
+++...... .....+++++||++|.|++++|+++.+.+.+.
T Consensus 185 ~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 185 KKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 333322211 12345799999999999999999999888754
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.55 E-value=2.1e-13 Score=111.54 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=80.6
Q ss_pred cee-EEEEEecCCCChHHHHHHhhcCC--------------Cc-----c--ccCCCceeeEEEEeC-------CEEEEEE
Q 030122 16 THV-LGFSFFIDNFGNLCDTDRLQMGE--------------VV-----S--TIPTIGFNVETVQYN-------NIKFQVW 66 (182)
Q Consensus 16 ~~~-~i~viG~~~~GKssl~~~l~~~~--------------~~-----~--~~~t~~~~~~~~~~~-------~~~~~i~ 66 (182)
.++ +|+++|+.++|||||..+|+... +. + +.-|+.....++.|+ ++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 345 59999999999999999987311 00 0 222333333445552 5899999
Q ss_pred ECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 67 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
|||||.+|.......++-+|++|+|+|+...-.-+.-.-| +...+ .++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----HTCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH----cCCCeEEEEccccccCc
Confidence 9999999999888888999999999999876554444444 33333 47999999999998754
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=1.3e-13 Score=104.52 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=55.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCC--cc-ccCCCceeeEEEEe---------------------CCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEV--VS-TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~---------------------~~~~~~i~d~~g~~~ 73 (182)
++|+++|.+|||||||++++.+... .. ...|+..+.....+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999997542 11 22234433333322 245799999999876
Q ss_pred Ch-------hhhhhhCCCCCEEEEEEeCCC
Q 030122 74 IR-------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~~~~i~v~d~~~ 96 (182)
.. ..+..+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999975
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.4e-14 Score=106.17 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=81.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeCCEEEEEEECCCCCCChh-------hhhhhCCCC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 85 (182)
...+|+++|.||||||||+|+|.+..... ...|.......+.+.+..++++||||--.... .....++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 34689999999999999999999866433 55666688888889999999999999643211 223345689
Q ss_pred CEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 86 EAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 86 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
|++++|+|.+++.. ++.+..-+... .....+.|.++++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence 99999999998743 22222222221 1123567889999999974
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=9.9e-14 Score=104.24 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH--
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~-- 136 (182)
.+..+.++||+|...-. ......+|.+++++|....+..+.+... + .+.|.++++||+|+......
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccCchhHHH
Confidence 57789999999965432 2234689999999997654322111111 0 13456788899997542211
Q ss_pred ---HHHHHhhccccc--CCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 137 ---AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 137 ---~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+.+...+..... .....+++.+|++++.|++++++.+.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122222211110 011235888999999999999999887653
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=5.4e-13 Score=101.56 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhcCCCcc---ccCCCceeeEEEEeC-----------------CEEEEEEECCCCC
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQT 72 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~i~d~~g~~ 72 (182)
......+|+++|.+|+|||||+|+|.+..... ...|+.++...+.+. ...+.+||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34456799999999999999999999876532 344555555555542 2359999999987
Q ss_pred CChh-------hhhhhCCCCCEEEEEEeCCCc
Q 030122 73 SIRP-------YWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 73 ~~~~-------~~~~~~~~~~~~i~v~d~~~~ 97 (182)
.... .+..+++++|++++|+|+.+.
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 6543 456678899999999998754
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=2.4e-12 Score=95.39 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCCChhhhhhhCCCCCEEEEEEeCCCcc-hHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhcccccC
Q 030122 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+....+..... ...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~--~~~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERW--ISIYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHH--HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHH--HHHHH
Confidence 7888888888999999999999999886 88888888876543 68999999999999753210101111 11112
Q ss_pred CCceEEEEecccCCCCHHHHHHHHH
Q 030122 150 NRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..+++++++||++|.|++++++.+.
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2245799999999999999998764
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=3.8e-10 Score=86.06 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.5
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc----ccCCCceeeEEEEeCC-----------------EEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS----TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~ 72 (182)
.....+|+++|++|||||||+|.|.+..... ...|+......+.+.+ ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 3445799999999999999999999866522 2234555555666543 468999999953
Q ss_pred C-------ChhhhhhhCCCCCEEEEEEeCCC
Q 030122 73 S-------IRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 73 ~-------~~~~~~~~~~~~~~~i~v~d~~~ 96 (182)
. +...+...++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 33345566789999999999863
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=1e-10 Score=88.89 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=67.7
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhccccc
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.+++|+..+..+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.+... .+.+.+.+. ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 45678888888999999999999998753 33433333322 4789999999999975432 222221110 001
Q ss_pred CCCc---eEEEEecccCCCCHHHHHHHHHHHH
Q 030122 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~i 177 (182)
+..+ ..++.+||++|.|++++++++.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 1112 2699999999999999999987654
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=2e-09 Score=84.53 Aligned_cols=153 Identities=11% Similarity=0.042 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhh------cCCCcc-----ccCCC-----------ceeeEE-----------------E
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ------MGEVVS-----TIPTI-----------GFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~------~~~~~~-----~~~t~-----------~~~~~~-----------------~ 56 (182)
....|+++|.+||||||++++|. +.+..- +.+.. ++.... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998 332110 11100 111111 0
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhhhh-----CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeE-EEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWRCY-----FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D 129 (182)
...++.+.++||||..... .++... +..+|.+++|+|........... ..+.. .+|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh-----hcCceEEEEeCCc
Confidence 1156789999999976532 222111 12689999999997654322222 22211 2574 89999999
Q ss_pred CCCCCCH-HHHHHhhccccc-----C-CC----ceEEEEecccCCCC-HHHHHHHHHHH
Q 030122 130 LPGALDD-AAVSEALELHKI-----K-NR----QWAIFKTCAIKGEG-LFEGMDWLSNT 176 (182)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~-----~-~~----~~~~~~~Sa~~~~~-i~~~~~~l~~~ 176 (182)
....... ..+...++.+.. . -. -.+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8754332 233333332210 0 00 11234689999999 99999888754
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=2.5e-10 Score=86.79 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=68.1
Q ss_pred CCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC-HHHHHHhhccccc
Q 030122 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.+++|+.....+++.++++++|+|++++.+ .|...+... ..+.|+++|+||+|+.+... .+.+.+.+. ..+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence 478888988888899999999999998763 222222222 14789999999999976432 222222111 011
Q ss_pred CCCc---eEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
+..+ ..++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1112 36899999999999999999876553
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=6.8e-09 Score=79.80 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=35.3
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcCCCcc---c--cCCCceeeEEEEe--CC--EEEEEEECCCCC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMGEVVS---T--IPTIGFNVETVQY--NN--IKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~~~~~---~--~~t~~~~~~~~~~--~~--~~~~i~d~~g~~ 72 (182)
+...++++++|++|||||||++.|++..+.. . .+........+.. .. ..+.++|++|-.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 3344579999999999999999999875432 1 1211111111112 11 368899999754
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=5.9e-10 Score=84.72 Aligned_cols=110 Identities=9% Similarity=0.041 Sum_probs=66.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC-----CCcc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhhC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG-----EVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYF 82 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~-----~~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~ 82 (182)
.+|+++|.+|+|||||+|.|.+. .... ..|........+... ..+.++||||-..... ....++
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 47999999999999999999976 2222 222222233333332 2378999999643221 112222
Q ss_pred --CCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCC
Q 030122 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 83 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~ 133 (182)
...+.++++++....--+..+.. +......+.|+++++||.|....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 56799999998743211111110 11112257899999999998653
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.79 E-value=2.8e-09 Score=80.95 Aligned_cols=113 Identities=7% Similarity=0.009 Sum_probs=65.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC------Ccc--ccCCCceeeEEEEeCCEEEEEEECCCCCCChh--------hhhhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE------VVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~------~~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~ 81 (182)
.+|+++|.+|+|||||+|+|.+.. ... ..|........+.+. ..+.++||||-..... ....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 579999999999999999999752 111 111111222233332 1378999999643221 11112
Q ss_pred --CCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCH
Q 030122 82 --FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 82 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~ 136 (182)
....+.++++++......+..+.. +......+.|+++++||+|.......
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred ccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccH
Confidence 246788999998643211111110 11112257899999999998764443
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=5.6e-09 Score=76.50 Aligned_cols=100 Identities=17% Similarity=0.137 Sum_probs=66.4
Q ss_pred EEECCCCCC-ChhhhhhhCCCCCEEEEEEeCCCcchHH--HHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHH
Q 030122 65 VWDLGGQTS-IRPYWRCYFPNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE 141 (182)
Q Consensus 65 i~d~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~ 141 (182)
+...||+.. ........+.++|+++.|+|+.++.+.. .+..+ + .++|.++|+||+|+.+....+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l-----~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----L-----KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----C-----SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----H-----CCCCEEEEEECcccCCHHHHHHHHH
Confidence 345788753 3445666788999999999999887654 33332 1 5789999999999986322222222
Q ss_pred hhcccccCCCceEEEEecccCCCCHHHHHHHHHHHHh
Q 030122 142 ALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 178 (182)
.+ +..+++++.+||+++.|++++++.+.+.+.
T Consensus 74 ~~-----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 74 HF-----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HH-----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HH-----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 22 122346999999999999999998877654
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.67 E-value=6.1e-09 Score=75.50 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=35.5
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCcee--eEEEEeCCEEEEEEECCCCCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFN--VETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~d~~g~~~ 73 (182)
++++++|.+|+|||||+|+|.+.......++.|.. ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 59999999999999999999987764433333321 112222 34789999999654
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.65 E-value=1.4e-07 Score=68.68 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc----------ccCCCceeeEEEEe------CCEEEEEEECCCCCCC------
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS----------TIPTIGFNVETVQY------NNIKFQVWDLGGQTSI------ 74 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~~~~~~------~~~~~~i~d~~g~~~~------ 74 (182)
.++++++|+.|||||||++.+++..... ...+.. ...+.+ -...+.++|++|-...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~--~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE--IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS--CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee--eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 3789999999999999999999743221 011111 111222 1236789999874221
Q ss_pred -hhh-----------hhh----------hCCCCCEEEEEEeCC-CcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 75 -RPY-----------WRC----------YFPNTEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 75 -~~~-----------~~~----------~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
... ... .+..+++.++++|.. .+-+-.+ ...+..+.. . .++++|++|+|..
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTM 153 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccC
Confidence 000 001 122468888999854 2222112 233333322 3 8999999999987
Q ss_pred CC
Q 030122 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 154 t~ 155 (270)
T 3sop_A 154 TL 155 (270)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.63 E-value=3.2e-07 Score=70.50 Aligned_cols=155 Identities=15% Similarity=0.021 Sum_probs=81.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcCCCcc--ccCCCcee----eEEEEeCC-EEEEEEECCCCCC----Chh-hhhhhCCC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMGEVVS--TIPTIGFN----VETVQYNN-IKFQVWDLGGQTS----IRP-YWRCYFPN 84 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~~~~~--~~~t~~~~----~~~~~~~~-~~~~i~d~~g~~~----~~~-~~~~~~~~ 84 (182)
...++++|++|||||||+|.+.+..... ....-+.. ........ -.+.++|++|-.. ... +....+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3489999999999999999999843222 00000100 01111121 2578899998421 111 11112233
Q ss_pred CCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC---------CCCCHHHHHHhhcccc----cC--
Q 030122 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDDAAVSEALELHK----IK-- 149 (182)
Q Consensus 85 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~---------~~~~~~~~~~~~~~~~----~~-- 149 (182)
.+..++ ++...... .-......+.. .+.|+++|.||.|+. +.....++.+.+.... .+
T Consensus 149 ~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 149 YDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp CSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455554 77652111 11112222322 468999999999863 2223333322221110 00
Q ss_pred CCceEEEEecc--cCCCCHHHHHHHHHHHHh
Q 030122 150 NRQWAIFKTCA--IKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa--~~~~~i~~~~~~l~~~i~ 178 (182)
.....++.+|+ ..+.|++++.+.+.+.+.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 01124788898 566679999999887654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=2.4e-08 Score=73.15 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=36.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCce--eeEEEEeCCEEEEEEECCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGF--NVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~d~~g~~ 72 (182)
...++|+++|.||+|||||+|++.+.......++.+. ....+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 3468999999999999999999998764442222221 1112222 3368899999964
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.42 E-value=5.8e-07 Score=69.46 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=63.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-ccC-----------CCceeeEEE--------------Ee--
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TIP-----------TIGFNVETV--------------QY-- 58 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~~-----------t~~~~~~~~--------------~~-- 58 (182)
...|+++|++||||||++..|.. .... + +.+ ..++..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999998873 1110 0 101 011111100 00
Q ss_pred -CCEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCC
Q 030122 59 -NNIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~ 131 (182)
.++.+.++||+|...... +.. .....+|.+++|+|+............+.. .-.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~-------~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKE-------ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH-------SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHh-------hCCCeEEEEECCCCc
Confidence 347899999999654322 111 112257999999998764433222222222 123567899999987
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 5
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.37 E-value=8.9e-07 Score=70.85 Aligned_cols=59 Identities=15% Similarity=-0.044 Sum_probs=40.8
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCc-cc-----cCCCceeeEEEEe---CCEEEEEEECCCCCC
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVV-ST-----IPTIGFNVETVQY---NNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~-~~-----~~t~~~~~~~~~~---~~~~~~i~d~~g~~~ 73 (182)
...++|+|+|.||+|||||+|+|.+.... .. ..|.++......+ .+..+.++||||-..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34578999999999999999999987632 21 2233332222211 467899999999643
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.30 E-value=1.2e-06 Score=67.77 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC------CCc----c-cc-----------------------CCCc---eeeEEEE-eC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG------EVV----S-TI-----------------------PTIG---FNVETVQ-YN 59 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~------~~~----~-~~-----------------------~t~~---~~~~~~~-~~ 59 (182)
..|+++|++|+||||++..|... ... + +. .+.. +....+. ..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 47999999999999999998862 110 0 00 0000 0000000 15
Q ss_pred CEEEEEEECCCCCCChh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCC-e-EEEEeeCCCCC
Q 030122 60 NIKFQVWDLGGQTSIRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-V-ALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~i~v~nK~D~~ 131 (182)
++.+.++||+|...... +.. ..+..+|.+++|+|...... .......+ . ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCCc
Confidence 67899999999765422 111 11236899999999865432 22222222 1 234 5 88999999986
Q ss_pred C
Q 030122 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 252 ~ 252 (432)
T 2v3c_C 252 A 252 (432)
T ss_dssp S
T ss_pred c
Confidence 4
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.22 E-value=5.5e-08 Score=76.16 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=56.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEe----CCEEEEEEECCCCC--CChhhh--------hh
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQT--SIRPYW--------RC 80 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~--~~~~~~--------~~ 80 (182)
..+..|+++|.+||||||+.++|.........++..+....+.. ......+||..|.+ +.+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999754321122222211111101 11344678888863 223333 45
Q ss_pred hCCCCCEEEEEEeCCCcchHHHHHHHHHHH
Q 030122 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 110 (182)
++....+.++|+|.++. +.+....|+..+
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 56567888999999987 444444554444
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.18 E-value=1.5e-06 Score=70.16 Aligned_cols=23 Identities=9% Similarity=-0.247 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.|+|+|+.|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999864
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.18 E-value=5.4e-07 Score=65.24 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=58.1
Q ss_pred CCCCCCC-hhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccc
Q 030122 68 LGGQTSI-RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||... .......+.++|+++.|+|+.++.+..... + . .. ++|.++|+||+|+.+....+.+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l-~--ll-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----V-D--FS-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----S-C--CT-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----H-H--hc-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 5776543 335566788999999999999886543210 1 1 11 789999999999986322223333221
Q ss_pred ccCCCceEEEEecccCCCCHHHHHHHHH
Q 030122 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 174 (182)
..++++ .+||+++.|++++++.+.
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHH
Confidence 123346 999999999999887754
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.09 E-value=1.3e-06 Score=64.49 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=59.0
Q ss_pred CChhhhhhhCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC----HHHHHHhhcccc
Q 030122 73 SIRPYWRCYFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~----~~~~~~~~~~~~ 147 (182)
+-..+.+..+.++|.+++|+|+.++.. ...+..++... . ..++|.++|+||+|+.+... .+.+.+.+.
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~--- 147 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-E---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR--- 147 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-H---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH---
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH---
Confidence 333445556789999999999987654 33333332222 2 26899999999999986532 223333331
Q ss_pred cCCCceEEEEecccCCCCHHHHHHH
Q 030122 148 IKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~~~~~ 172 (182)
..+++++.+|+.++.|++++++.
T Consensus 148 --~~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 --NIGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp --HHTCCEEECCHHHHTTCTTTGGG
T ss_pred --hCCCeEEEEecCCCCCHHHHHhh
Confidence 12245999999999998876643
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.02 E-value=1.1e-05 Score=62.34 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=62.5
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCcc-----cc-----------CCCceeeEE--------------EE---
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVVS-----TI-----------PTIGFNVET--------------VQ--- 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~~-----~~-----------~t~~~~~~~--------------~~--- 57 (182)
...|+++|++||||||++..|.. ....- +. ...++.... +.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 45789999999999999999873 11100 00 011111110 00
Q ss_pred eCCEEEEEEECCCCCC--Chh-hhhh-----hCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q 030122 58 YNNIKFQVWDLGGQTS--IRP-YWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 129 (182)
..++.+.++||+|... ... +... .....+.+++|+|.............+... -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 1367889999999644 211 1110 112468999999987654333333333322 135788999999
Q ss_pred CCC
Q 030122 130 LPG 132 (182)
Q Consensus 130 ~~~ 132 (182)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 864
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.91 E-value=1.1e-05 Score=59.51 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=62.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc------CCCc----c-ccCC-----------CceeeEE-----------------EE
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM------GEVV----S-TIPT-----------IGFNVET-----------------VQ 57 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~------~~~~----~-~~~t-----------~~~~~~~-----------------~~ 57 (182)
.-.|+++|++|+||||++..+.. .+.. + +.+. .++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 34688899999999999998873 1110 0 1110 0111000 01
Q ss_pred eCCEEEEEEECCCCCC--Chh-hhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCC
Q 030122 58 YNNIKFQVWDLGGQTS--IRP-YWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~ 128 (182)
...+.+.++||||... ... +.. .....+|.+++|+|..... ........+.. ..| ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322 221 1233689999999986432 22222222221 245 67899999
Q ss_pred CCCC
Q 030122 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9763
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.73 E-value=0.00011 Score=55.32 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=51.9
Q ss_pred hCCCCCEEEEEEeCCCcch-HHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCCCCC---HHHHHHhhcccccCCCceEEE
Q 030122 81 YFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 81 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 156 (182)
...++|.+++|... +|.. ...+..++.... ..++|.++|+||+|+.+... .+++...+ ...+++++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 35789999988665 4543 333333332221 25788899999999986422 11222222 23445699
Q ss_pred EecccCCCCHHHHHHH
Q 030122 157 KTCAIKGEGLFEGMDW 172 (182)
Q Consensus 157 ~~Sa~~~~~i~~~~~~ 172 (182)
.+|+.++.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999987654
No 234
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=2.1e-05 Score=53.52 Aligned_cols=22 Identities=5% Similarity=-0.218 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988864
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.62 E-value=6e-05 Score=58.44 Aligned_cols=24 Identities=13% Similarity=-0.355 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.-|.|+|++++|||+|+|+|++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345999999999999999999853
No 236
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.58 E-value=5.9e-05 Score=52.08 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=22.2
Q ss_pred CCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 13 PPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 13 ~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
++.....|++.|++||||||+.+.|..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344446799999999999999998874
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.57 E-value=4.1e-05 Score=52.06 Aligned_cols=22 Identities=9% Similarity=-0.129 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=3.9e-05 Score=52.40 Aligned_cols=23 Identities=9% Similarity=-0.233 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.|+++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999865
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.57 E-value=0.00039 Score=53.83 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=62.0
Q ss_pred eeEEEEEecCCCChHHHHHHhh-------cCCCc-----cccCC-----------CceeeEE--------------E---
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQ-------MGEVV-----STIPT-----------IGFNVET--------------V--- 56 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~-------~~~~~-----~~~~t-----------~~~~~~~--------------~--- 56 (182)
...|+++|.+|+||||++..|. +.+.. .+.+. .++.... +
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999987 22211 01110 0111000 0
Q ss_pred EeCCEEEEEEECCCCCCCh-hhhh-----hhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCe-EEEEeeCCC
Q 030122 57 QYNNIKFQVWDLGGQTSIR-PYWR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~i~d~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~D 129 (182)
...++.+.++||||..... .+.. ..+..++.+++|+|....... ......+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecCC
Confidence 1146789999999976542 2221 123468999999998754332 222222211 233 346899999
Q ss_pred CCCC
Q 030122 130 LPGA 133 (182)
Q Consensus 130 ~~~~ 133 (182)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8643
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.56 E-value=3.6e-05 Score=53.22 Aligned_cols=21 Identities=10% Similarity=-0.258 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.54 E-value=5.7e-05 Score=52.13 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=23.4
Q ss_pred cCCCCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 10 TSHPPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 10 ~~~~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
++..+.....|++.|++||||||+.+.|..
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556667899999999999999999864
No 242
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.53 E-value=5.2e-05 Score=53.71 Aligned_cols=29 Identities=10% Similarity=-0.077 Sum_probs=21.6
Q ss_pred CCCCcceeEEEEEecCCCChHHHHHHhhc
Q 030122 11 SHPPCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 11 ~~~~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+....+|+|+|++||||||+.+.|..
T Consensus 10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33344446899999999999999999874
No 243
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.50 E-value=0.00063 Score=46.80 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCEEEEEEECCCCCCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccC-CCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D~~~ 132 (182)
..+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+..... ..+.++.+|+|+.|...
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 35789999999865 334455566799999999876544 555555555433221 24678899999999543
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=5e-05 Score=52.44 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.49 E-value=6.6e-05 Score=51.86 Aligned_cols=27 Identities=7% Similarity=-0.227 Sum_probs=22.1
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhcC
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+...-.|+++|++|||||||++.|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334446899999999999999999853
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.48 E-value=5.1e-05 Score=51.85 Aligned_cols=22 Identities=9% Similarity=-0.266 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|+.||||||+++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999854
No 247
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.47 E-value=7.7e-05 Score=50.30 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999986
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=5.5e-05 Score=51.00 Aligned_cols=20 Identities=10% Similarity=-0.157 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999654
No 249
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.46 E-value=8.2e-05 Score=52.22 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=20.4
Q ss_pred CcceeE-EEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVL-GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~-i~viG~~~~GKssl~~~l~~ 39 (182)
...+.| |+++|+|||||+|.+.+|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334445 56789999999999998874
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=9e-05 Score=51.52 Aligned_cols=24 Identities=13% Similarity=-0.148 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998874
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=7.7e-05 Score=49.92 Aligned_cols=20 Identities=10% Similarity=-0.189 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHHh
Q 030122 18 VLGFSFFIDNFGNLCDTDRL 37 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l 37 (182)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.42 E-value=7.9e-05 Score=51.03 Aligned_cols=21 Identities=10% Similarity=-0.243 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+++||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999853
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.41 E-value=7.1e-05 Score=51.99 Aligned_cols=23 Identities=9% Similarity=-0.208 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999988643
No 254
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.41 E-value=8.5e-05 Score=51.72 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=7.2e-05 Score=52.04 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++||||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999998653
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.41 E-value=7.3e-05 Score=52.47 Aligned_cols=22 Identities=9% Similarity=-0.231 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998864
No 257
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=7.5e-05 Score=52.51 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999988643
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.40 E-value=0.00011 Score=51.09 Aligned_cols=22 Identities=9% Similarity=-0.301 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|+.|||||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=9.1e-05 Score=51.31 Aligned_cols=23 Identities=4% Similarity=-0.256 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998753
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.0001 Score=49.27 Aligned_cols=21 Identities=14% Similarity=-0.240 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=9.2e-05 Score=49.67 Aligned_cols=22 Identities=14% Similarity=-0.198 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.35 E-value=0.00015 Score=48.71 Aligned_cols=22 Identities=5% Similarity=-0.041 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.35 E-value=0.00011 Score=52.32 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.34 E-value=9.8e-05 Score=50.96 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999988653
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.34 E-value=0.0001 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999974
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00012 Score=51.09 Aligned_cols=22 Identities=5% Similarity=-0.061 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 267
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.31 E-value=0.00013 Score=50.87 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.31 E-value=0.00011 Score=50.65 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 269
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.00017 Score=49.13 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00014 Score=48.51 Aligned_cols=23 Identities=13% Similarity=-0.122 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998754
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00014 Score=50.11 Aligned_cols=21 Identities=10% Similarity=-0.224 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 272
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.28 E-value=0.00014 Score=51.73 Aligned_cols=22 Identities=5% Similarity=-0.257 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988754
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00014 Score=49.01 Aligned_cols=22 Identities=14% Similarity=-0.242 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.27 E-value=0.0002 Score=48.79 Aligned_cols=22 Identities=14% Similarity=-0.097 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.26 E-value=0.0002 Score=48.63 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 276
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.25 E-value=0.00015 Score=49.80 Aligned_cols=21 Identities=10% Similarity=-0.157 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 277
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.24 E-value=0.00018 Score=50.16 Aligned_cols=21 Identities=5% Similarity=-0.243 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00015 Score=50.05 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 279
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.23 E-value=0.00018 Score=54.29 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997554
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.23 E-value=0.00017 Score=49.71 Aligned_cols=21 Identities=5% Similarity=-0.396 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999876
No 281
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.23 E-value=0.00017 Score=50.80 Aligned_cols=22 Identities=9% Similarity=-0.256 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988754
No 282
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00024 Score=48.84 Aligned_cols=25 Identities=8% Similarity=-0.307 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4468999999999999999998764
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00022 Score=48.63 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00015 Score=49.73 Aligned_cols=22 Identities=9% Similarity=-0.189 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
+++++|+.|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998863
No 285
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.22 E-value=0.00013 Score=49.31 Aligned_cols=23 Identities=4% Similarity=-0.409 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00024 Score=50.66 Aligned_cols=24 Identities=8% Similarity=-0.172 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+|++.|++||||||+.++|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.20 E-value=0.00021 Score=48.46 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00023 Score=49.21 Aligned_cols=22 Identities=5% Similarity=-0.384 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.20 E-value=0.00018 Score=49.68 Aligned_cols=22 Identities=9% Similarity=-0.078 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+.+.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00021 Score=48.57 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00024 Score=48.01 Aligned_cols=22 Identities=9% Similarity=-0.206 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 292
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00026 Score=51.76 Aligned_cols=24 Identities=4% Similarity=-0.294 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999964
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.18 E-value=0.00026 Score=48.16 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998754
No 294
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.18 E-value=0.0002 Score=50.16 Aligned_cols=22 Identities=5% Similarity=-0.355 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 295
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.17 E-value=0.00023 Score=50.73 Aligned_cols=23 Identities=4% Similarity=-0.272 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 296
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.17 E-value=0.00023 Score=50.62 Aligned_cols=22 Identities=14% Similarity=-0.179 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 297
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.00027 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.036 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00021 Score=52.74 Aligned_cols=21 Identities=14% Similarity=-0.222 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 799999999999999999874
No 299
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.16 E-value=0.00021 Score=51.99 Aligned_cols=23 Identities=4% Similarity=-0.239 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999888643
No 300
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.15 E-value=0.00022 Score=51.55 Aligned_cols=23 Identities=9% Similarity=-0.205 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999888643
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.15 E-value=0.00021 Score=50.03 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.15 E-value=0.00022 Score=49.88 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 303
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.00024 Score=50.83 Aligned_cols=23 Identities=13% Similarity=-0.309 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.15 E-value=0.0002 Score=51.66 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|+.||||||+++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999875
No 305
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.15 E-value=0.00029 Score=50.53 Aligned_cols=21 Identities=10% Similarity=-0.309 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
..|+++|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00024 Score=49.66 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 307
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.14 E-value=0.00022 Score=50.59 Aligned_cols=20 Identities=5% Similarity=-0.253 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999887
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.14 E-value=0.00037 Score=48.25 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.14 E-value=0.00025 Score=50.57 Aligned_cols=22 Identities=9% Similarity=-0.380 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.14 E-value=0.00026 Score=49.76 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.14 E-value=0.00022 Score=49.74 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 312
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.13 E-value=0.00025 Score=51.29 Aligned_cols=22 Identities=9% Similarity=-0.263 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998864
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00023 Score=47.89 Aligned_cols=21 Identities=10% Similarity=-0.249 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 314
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.13 E-value=0.00025 Score=49.67 Aligned_cols=22 Identities=5% Similarity=-0.138 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 315
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.13 E-value=0.00027 Score=49.99 Aligned_cols=23 Identities=9% Similarity=-0.344 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
No 316
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.12 E-value=0.00024 Score=51.11 Aligned_cols=23 Identities=4% Similarity=-0.205 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
No 317
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00025 Score=48.01 Aligned_cols=154 Identities=8% Similarity=-0.017 Sum_probs=66.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCCCccccCCCceeeEEEEeCCEEEEEEECCCCCCChhhhhhh----CCCCCEEEEEEe
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY----FPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~~~~i~v~d 93 (182)
..+++.|++|||||||++++...-. ..+.....+......+ -+|.+|.+.++-....+ ........++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-----ccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 3689999999999999999985311 1122233333322222 13555654433211111 011122222333
Q ss_pred C--CCcchHHHHHHHHHHH------HhccCCCCCeEEEEeeCCCCCCCCCHHHHHHhhccccc--CCCceEEEEecccCC
Q 030122 94 S--SDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI--KNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~p~i~v~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~ 163 (182)
. .....++.+...+... .+.......|.+++.+|.+..+................ ....++.|..
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~~~~~~~~~~~i~av~~d~~~~~~~p~~~~----- 155 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDI----- 155 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSCCGGGCCCCTTEEEEEESSCCCCSSEEEET-----
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCCcccCccCCCCEEEEEecCCccCCCCcCCc-----
Confidence 1 2234566665433211 11123356899999998864321000000000000000 0012233322
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 030122 164 EGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 164 ~~i~~~~~~l~~~i~~~~s 182 (182)
..++++.+++.+.+.+.+|
T Consensus 156 ~d~~~ia~~i~~~~~~~~~ 174 (174)
T 1np6_A 156 NDVEGLADFVVEWMQKQNG 174 (174)
T ss_dssp TCHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhhcC
Confidence 5688888898887766553
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.10 E-value=0.00043 Score=47.04 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.10 E-value=0.00028 Score=49.54 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00034 Score=47.78 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.09 E-value=0.0003 Score=50.74 Aligned_cols=22 Identities=9% Similarity=-0.331 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998864
No 322
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.09 E-value=0.0003 Score=50.83 Aligned_cols=22 Identities=9% Similarity=-0.171 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999988864
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.09 E-value=0.0003 Score=50.08 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.09 E-value=0.00016 Score=51.00 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=15.0
Q ss_pred EEEEEecCCCChHHHHHHhh-cC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ-MG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~-~~ 40 (182)
.|+++|+.||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 54
No 325
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00031 Score=49.08 Aligned_cols=22 Identities=5% Similarity=-0.198 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.+|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 326
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.08 E-value=0.00031 Score=50.33 Aligned_cols=23 Identities=9% Similarity=-0.168 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999987643
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.08 E-value=0.00026 Score=52.49 Aligned_cols=24 Identities=13% Similarity=-0.166 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|+.|||||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 345799999999999999998875
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.07 E-value=0.00051 Score=47.51 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++||||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 329
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.07 E-value=9.8e-05 Score=54.53 Aligned_cols=23 Identities=4% Similarity=-0.211 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|++|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 79999999999999999998654
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.07 E-value=0.00031 Score=46.78 Aligned_cols=21 Identities=10% Similarity=-0.202 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.07 E-value=0.00039 Score=51.63 Aligned_cols=26 Identities=12% Similarity=-0.121 Sum_probs=21.8
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+-|+++|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998864
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00044 Score=46.99 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|.+||||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 333
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.06 E-value=0.00034 Score=50.15 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 334
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.06 E-value=0.00032 Score=50.87 Aligned_cols=23 Identities=13% Similarity=-0.203 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 335
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.06 E-value=0.00033 Score=50.39 Aligned_cols=23 Identities=4% Similarity=-0.276 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.06 E-value=0.00039 Score=49.10 Aligned_cols=25 Identities=4% Similarity=-0.275 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....|++.|+.||||||+++.+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998764
No 337
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.06 E-value=0.00034 Score=50.63 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 338
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.06 E-value=0.00033 Score=51.04 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999888643
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.05 E-value=0.00033 Score=47.97 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 340
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.05 E-value=0.0041 Score=43.12 Aligned_cols=68 Identities=4% Similarity=-0.094 Sum_probs=46.7
Q ss_pred CCEEEEEEECCCC-CCChhhhhhhCCCCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 59 NNIKFQVWDLGGQ-TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~i~d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
..+.+.++|+|+. ... .....+..+|.+|++...+ ..++..+...+..+.... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999986 433 3344566799999999765 455566666555554422 567889999998764
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.04 E-value=0.00036 Score=47.99 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++.|++||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 342
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00043 Score=50.99 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHhhcCCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGEV 42 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~~ 42 (182)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 689999999999999999987543
No 343
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.03 E-value=0.00036 Score=50.14 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
No 344
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.00031 Score=50.38 Aligned_cols=24 Identities=8% Similarity=-0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.03 E-value=0.00049 Score=50.45 Aligned_cols=26 Identities=8% Similarity=-0.142 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
......|++.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999988763
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00016 Score=48.77 Aligned_cols=21 Identities=10% Similarity=-0.107 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.01 E-value=0.00039 Score=50.33 Aligned_cols=22 Identities=5% Similarity=-0.389 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999998864
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00027 Score=47.79 Aligned_cols=22 Identities=9% Similarity=-0.115 Sum_probs=15.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.00 E-value=0.00034 Score=50.17 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999864
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.00 E-value=0.00034 Score=47.37 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00045 Score=49.43 Aligned_cols=26 Identities=8% Similarity=-0.282 Sum_probs=21.2
Q ss_pred CcceeEEEEEecCCCChHHHHHHhhc
Q 030122 14 PCTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 14 ~~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....+.|++.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999998865
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.99 E-value=0.00029 Score=46.36 Aligned_cols=22 Identities=5% Similarity=-0.100 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
No 353
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.99 E-value=0.00042 Score=50.07 Aligned_cols=23 Identities=4% Similarity=-0.294 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988654
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.99 E-value=0.00058 Score=47.13 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|+++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 355
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.00034 Score=50.81 Aligned_cols=21 Identities=5% Similarity=-0.233 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998853
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.99 E-value=0.00047 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.97 E-value=0.00043 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.037 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 358
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.00039 Score=51.23 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
.++++|++|||||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 359
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.97 E-value=0.00031 Score=53.15 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHHHhhcC
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-+++++|+.|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998864
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.97 E-value=0.00019 Score=49.79 Aligned_cols=21 Identities=19% Similarity=-0.013 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.96 E-value=0.00047 Score=47.10 Aligned_cols=21 Identities=19% Similarity=-0.056 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 362
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.93 E-value=0.00042 Score=49.51 Aligned_cols=21 Identities=5% Similarity=-0.211 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998854
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.93 E-value=0.00053 Score=50.27 Aligned_cols=23 Identities=9% Similarity=-0.344 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999888643
No 364
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.93 E-value=0.00042 Score=52.30 Aligned_cols=21 Identities=10% Similarity=-0.154 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|+.||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00047 Score=46.09 Aligned_cols=21 Identities=14% Similarity=-0.108 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.00047 Score=49.60 Aligned_cols=22 Identities=14% Similarity=0.005 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.92 E-value=0.00049 Score=51.87 Aligned_cols=23 Identities=17% Similarity=-0.067 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999988754
No 368
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.92 E-value=0.00058 Score=48.63 Aligned_cols=22 Identities=9% Similarity=-0.233 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|+.||||||+++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 369
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.90 E-value=0.00032 Score=51.83 Aligned_cols=22 Identities=9% Similarity=-0.413 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 7899999999999999988753
No 370
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.90 E-value=0.00071 Score=49.96 Aligned_cols=23 Identities=13% Similarity=-0.168 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|+++|+.|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.0005 Score=46.34 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.88 E-value=0.00048 Score=50.80 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999999874
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.00061 Score=45.83 Aligned_cols=21 Identities=5% Similarity=-0.143 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+.+.|++||||||++.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00073 Score=47.10 Aligned_cols=23 Identities=4% Similarity=-0.295 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 375
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.86 E-value=0.0006 Score=50.90 Aligned_cols=22 Identities=5% Similarity=-0.331 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999864
No 376
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.86 E-value=0.00054 Score=47.96 Aligned_cols=21 Identities=5% Similarity=-0.338 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999884
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.84 E-value=0.00082 Score=48.97 Aligned_cols=24 Identities=17% Similarity=-0.099 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.00061 Score=51.51 Aligned_cols=22 Identities=9% Similarity=-0.210 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
No 379
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.83 E-value=0.00061 Score=51.47 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999888643
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.83 E-value=0.00062 Score=51.28 Aligned_cols=23 Identities=9% Similarity=-0.275 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999988653
No 381
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.00071 Score=45.11 Aligned_cols=21 Identities=10% Similarity=-0.121 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00058 Score=50.32 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 383
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.82 E-value=0.0007 Score=47.97 Aligned_cols=23 Identities=9% Similarity=-0.174 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
..+.|++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999887
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.81 E-value=0.00064 Score=51.29 Aligned_cols=23 Identities=9% Similarity=-0.282 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58999999999999999988743
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.81 E-value=0.00062 Score=51.66 Aligned_cols=21 Identities=10% Similarity=-0.160 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|+++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 386
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.81 E-value=0.00065 Score=51.62 Aligned_cols=23 Identities=9% Similarity=-0.226 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58999999999999999988744
No 387
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.81 E-value=0.00094 Score=47.15 Aligned_cols=24 Identities=4% Similarity=-0.220 Sum_probs=21.0
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
....|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999999874
No 388
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.00066 Score=51.28 Aligned_cols=23 Identities=4% Similarity=-0.362 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58999999999999999988753
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.80 E-value=0.00084 Score=49.16 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999885
No 390
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.79 E-value=0.00077 Score=47.62 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++++++|+|||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999998865
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.79 E-value=0.00088 Score=45.18 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.79 E-value=0.00066 Score=49.67 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 393
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.79 E-value=0.00091 Score=45.94 Aligned_cols=25 Identities=12% Similarity=-0.168 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+..|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999988753
No 394
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.79 E-value=0.00064 Score=50.71 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-.|+++|+.||||||+++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999886
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.78 E-value=0.00065 Score=49.27 Aligned_cols=21 Identities=5% Similarity=-0.211 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998854
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.77 E-value=0.00064 Score=50.75 Aligned_cols=22 Identities=5% Similarity=-0.195 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998854
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.00072 Score=51.29 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999988654
No 398
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.76 E-value=0.00075 Score=51.17 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999988743
No 399
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.75 E-value=0.00074 Score=46.90 Aligned_cols=21 Identities=10% Similarity=-0.141 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.75 E-value=0.00075 Score=46.86 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+++.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.73 E-value=0.00082 Score=53.14 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|++||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999988643
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.73 E-value=0.00072 Score=48.46 Aligned_cols=22 Identities=5% Similarity=-0.179 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 403
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.73 E-value=0.00072 Score=52.09 Aligned_cols=22 Identities=5% Similarity=-0.312 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|+|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998853
No 404
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.71 E-value=0.00081 Score=47.44 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999863
No 405
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.71 E-value=0.00077 Score=48.50 Aligned_cols=25 Identities=8% Similarity=-0.441 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999988743
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.00082 Score=48.06 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 407
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.00099 Score=46.75 Aligned_cols=22 Identities=5% Similarity=-0.271 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 408
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.67 E-value=0.00069 Score=45.51 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 409
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=50.58 Aligned_cols=22 Identities=5% Similarity=-0.407 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999988864
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.65 E-value=0.001 Score=49.96 Aligned_cols=23 Identities=13% Similarity=-0.139 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 89999999999999999998764
No 411
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.65 E-value=0.00061 Score=51.19 Aligned_cols=23 Identities=4% Similarity=-0.301 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999988643
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.61 E-value=0.00099 Score=50.27 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 3699999999999999999886
No 413
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.61 E-value=0.0011 Score=45.57 Aligned_cols=22 Identities=5% Similarity=-0.281 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||+|+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.001 Score=51.94 Aligned_cols=23 Identities=9% Similarity=-0.263 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|||||||++-+.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999988743
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.58 E-value=0.0013 Score=44.32 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++|+.|||||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0011 Score=52.04 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|+.||||||+++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4699999999999999999875
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.56 E-value=0.00093 Score=46.33 Aligned_cols=21 Identities=10% Similarity=-0.331 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.||||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888764
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.53 E-value=0.0011 Score=49.07 Aligned_cols=23 Identities=4% Similarity=-0.159 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
-+++.|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999653
No 419
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.53 E-value=0.00061 Score=51.33 Aligned_cols=23 Identities=4% Similarity=-0.379 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999988653
No 420
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.52 E-value=0.0013 Score=47.65 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999885
No 421
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.51 E-value=0.0049 Score=47.83 Aligned_cols=21 Identities=14% Similarity=-0.284 Sum_probs=17.9
Q ss_pred eEEEEEecCCCChHHHHHHhh
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~ 38 (182)
.-|.|+|+.++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 347799999999999999654
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.47 E-value=0.0014 Score=49.83 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999999884
No 423
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.47 E-value=0.0016 Score=45.93 Aligned_cols=21 Identities=5% Similarity=-0.200 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888763
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0017 Score=45.83 Aligned_cols=25 Identities=4% Similarity=-0.275 Sum_probs=21.4
Q ss_pred cceeEEEEEecCCCChHHHHHHhhc
Q 030122 15 CTHVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 15 ~~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
.....|+++|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999998875
No 425
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.46 E-value=0.0016 Score=50.52 Aligned_cols=23 Identities=9% Similarity=-0.237 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
+++++|+.|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998754
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.0015 Score=45.02 Aligned_cols=21 Identities=10% Similarity=-0.239 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998874
No 427
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.46 E-value=0.0015 Score=45.64 Aligned_cols=21 Identities=10% Similarity=-0.179 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.46 E-value=0.0025 Score=49.08 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=20.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.45 E-value=0.0014 Score=47.82 Aligned_cols=23 Identities=9% Similarity=-0.204 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.43 E-value=0.0016 Score=47.68 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-+++.|+||+|||++++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577779999999999999874
No 431
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0023 Score=46.93 Aligned_cols=23 Identities=4% Similarity=-0.302 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999986653
No 432
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=46.45 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.41 E-value=0.0023 Score=47.53 Aligned_cols=22 Identities=14% Similarity=-0.220 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|+++|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.0016 Score=47.23 Aligned_cols=23 Identities=4% Similarity=-0.208 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999753
No 435
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0019 Score=42.06 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHhhcCC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~~ 41 (182)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999887543
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.39 E-value=0.0021 Score=43.61 Aligned_cols=21 Identities=10% Similarity=-0.208 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHhhcC
Q 030122 20 GFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~~ 40 (182)
|+|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 437
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.38 E-value=0.0017 Score=47.70 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+|||++++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999998853
No 438
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.36 E-value=0.0018 Score=48.63 Aligned_cols=22 Identities=14% Similarity=-0.127 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-+.++|++|||||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.35 E-value=0.0023 Score=42.05 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-.+++|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999976
No 440
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.33 E-value=0.0022 Score=51.58 Aligned_cols=22 Identities=5% Similarity=-0.339 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999988764
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.32 E-value=0.0019 Score=47.82 Aligned_cols=22 Identities=9% Similarity=-0.224 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999875
No 442
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.32 E-value=0.0023 Score=43.97 Aligned_cols=21 Identities=10% Similarity=-0.172 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 443
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.29 E-value=0.003 Score=47.47 Aligned_cols=24 Identities=13% Similarity=-0.115 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999987764
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.28 E-value=0.0024 Score=50.86 Aligned_cols=23 Identities=9% Similarity=-0.239 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988743
No 445
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.27 E-value=0.0033 Score=46.02 Aligned_cols=23 Identities=9% Similarity=-0.210 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988753
No 446
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.27 E-value=0.0019 Score=42.02 Aligned_cols=23 Identities=4% Similarity=-0.354 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999887643
No 447
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.27 E-value=0.0025 Score=46.79 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=58.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc------CCCc-----c-ccCC-----------CceeeEE------E-----EeCCEEE
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM------GEVV-----S-TIPT-----------IGFNVET------V-----QYNNIKF 63 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~------~~~~-----~-~~~t-----------~~~~~~~------~-----~~~~~~~ 63 (182)
-.|+++|++|+||||++..|.. +... + +.++ .++.... + ...+..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~dl 185 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYDH 185 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCCE
Confidence 3799999999999999998863 1100 0 0000 0100000 0 0145689
Q ss_pred EEEECCCCCCChh--h--hhhhCC--CCCEEEEEEeCCCcchHHHHHHHHHHHHhccCCCCCeEEEEeeCCCCCC
Q 030122 64 QVWDLGGQTSIRP--Y--WRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 64 ~i~d~~g~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D~~~ 132 (182)
.++||+|...... + ....+. ..+..++|+|.+.. ...+..+...+. ..+ ..-++.||.|...
T Consensus 186 vIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 186 VFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCS
T ss_pred EEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCccc
Confidence 9999999765432 1 112233 36778899987642 233333322221 112 2346669999764
No 448
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.26 E-value=0.0027 Score=43.77 Aligned_cols=23 Identities=9% Similarity=-0.230 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|+++|++|+|||++...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999754
No 449
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.26 E-value=0.0021 Score=50.36 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998886
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.0023 Score=48.15 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||+|++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 451
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.20 E-value=0.0022 Score=51.62 Aligned_cols=22 Identities=9% Similarity=-0.271 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988864
No 452
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.20 E-value=0.0025 Score=51.19 Aligned_cols=22 Identities=5% Similarity=-0.325 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.18 E-value=0.0039 Score=44.94 Aligned_cols=25 Identities=8% Similarity=-0.164 Sum_probs=21.3
Q ss_pred ceeEEEEEecCCCChHHHHHHhhcC
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||++++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998753
No 454
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.17 E-value=0.0025 Score=51.41 Aligned_cols=22 Identities=9% Similarity=-0.330 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++-+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7999999999999999988753
No 455
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.17 E-value=0.0026 Score=46.92 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++||||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3689999999999999998875
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.16 E-value=0.0026 Score=46.44 Aligned_cols=22 Identities=14% Similarity=-0.121 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.14 E-value=0.0027 Score=50.49 Aligned_cols=23 Identities=9% Similarity=-0.201 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999988743
No 458
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0024 Score=47.75 Aligned_cols=20 Identities=10% Similarity=-0.097 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHHhhc
Q 030122 20 GFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~~ 39 (182)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0041 Score=44.02 Aligned_cols=23 Identities=9% Similarity=-0.416 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
..|++-|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 460
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.003 Score=47.20 Aligned_cols=22 Identities=9% Similarity=-0.232 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-|++.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999998875
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.12 E-value=0.0021 Score=51.59 Aligned_cols=22 Identities=5% Similarity=-0.310 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999977753
No 462
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0028 Score=47.83 Aligned_cols=22 Identities=9% Similarity=-0.179 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 463
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0027 Score=49.01 Aligned_cols=21 Identities=5% Similarity=-0.195 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.||||+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 464
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=47.12 Aligned_cols=23 Identities=9% Similarity=-0.182 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999998853
No 465
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.11 E-value=0.0032 Score=48.25 Aligned_cols=20 Identities=15% Similarity=-0.150 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHHhh
Q 030122 19 LGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~ 38 (182)
-++++|++|+|||||+.+++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58999999999999999876
No 466
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0029 Score=48.94 Aligned_cols=21 Identities=5% Similarity=-0.165 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.||||+|||.|++.+.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.08 E-value=0.0029 Score=47.16 Aligned_cols=22 Identities=9% Similarity=-0.132 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.06 E-value=0.0048 Score=45.50 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
.-|+++||+|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4688999999999999999974
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.0028 Score=50.98 Aligned_cols=22 Identities=9% Similarity=-0.212 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988753
No 470
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.06 E-value=0.0033 Score=47.53 Aligned_cols=19 Identities=5% Similarity=-0.157 Sum_probs=17.5
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
.+++|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999987
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0033 Score=50.73 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 69999999999999999988743
No 472
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0031 Score=48.77 Aligned_cols=21 Identities=5% Similarity=-0.172 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-|++.||||+|||+|++.+.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 699999999999999999974
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.04 E-value=0.0037 Score=49.76 Aligned_cols=23 Identities=13% Similarity=-0.190 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 474
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.04 E-value=0.0051 Score=45.92 Aligned_cols=23 Identities=13% Similarity=-0.172 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.02 E-value=0.0034 Score=43.59 Aligned_cols=22 Identities=9% Similarity=-0.254 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 476
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.01 E-value=0.0033 Score=46.59 Aligned_cols=22 Identities=5% Similarity=-0.192 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+|||++++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999875
No 477
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0038 Score=49.68 Aligned_cols=23 Identities=9% Similarity=-0.234 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998743
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.99 E-value=0.0039 Score=50.37 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++-+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999988743
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.97 E-value=0.0054 Score=42.79 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+|-|++||||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.97 E-value=0.0039 Score=49.46 Aligned_cols=19 Identities=5% Similarity=-0.178 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHhh
Q 030122 20 GFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 20 i~viG~~~~GKssl~~~l~ 38 (182)
++++|++|||||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 481
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.96 E-value=0.005 Score=43.69 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=20.6
Q ss_pred ceeEEEEEecCCCChHHHHHHhhc
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~~ 39 (182)
+..-|++.|++||||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0031 Score=47.44 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.95 E-value=0.0033 Score=44.31 Aligned_cols=23 Identities=13% Similarity=-0.175 Sum_probs=17.2
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
..-|+|-|++||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.93 E-value=0.004 Score=46.78 Aligned_cols=21 Identities=5% Similarity=-0.238 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.93 E-value=0.0044 Score=50.05 Aligned_cols=23 Identities=13% Similarity=-0.190 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHhhcCC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMGE 41 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.93 E-value=0.0016 Score=46.73 Aligned_cols=21 Identities=5% Similarity=-0.295 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.92 E-value=0.0055 Score=45.32 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
.-|++.||+|||||+|...+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999999753
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0038 Score=47.74 Aligned_cols=21 Identities=5% Similarity=-0.210 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
.|++.||||+|||.|++.+.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 599999999999999999975
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.004 Score=46.39 Aligned_cols=22 Identities=9% Similarity=-0.127 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988754
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.90 E-value=0.0028 Score=46.40 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCChHHHHHHhhc
Q 030122 17 HVLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 17 ~~~i~viG~~~~GKssl~~~l~~ 39 (182)
...|++-|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998864
No 491
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.89 E-value=0.0065 Score=42.73 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=19.7
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
.+++|++.|++|+||||++-.+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999966655
No 492
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.87 E-value=0.0044 Score=46.02 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999998753
No 493
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.87 E-value=0.0043 Score=46.00 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
-++|.|++|+|||||++++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.86 E-value=0.0043 Score=46.71 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+|||++++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999998753
No 495
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.86 E-value=0.0029 Score=50.49 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHhhc
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~ 39 (182)
-.|+++|++|||||||++.|.+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4699999999999999999874
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.85 E-value=0.004 Score=49.60 Aligned_cols=22 Identities=5% Similarity=-0.150 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988753
No 497
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.82 E-value=0.0052 Score=46.28 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHhhc
Q 030122 19 LGFSFFIDNFGNLCDTDRLQM 39 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~ 39 (182)
-+.+.|++|+|||||+.++..
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.81 E-value=0.0046 Score=48.33 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHhhcC
Q 030122 18 VLGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 18 ~~i~viG~~~~GKssl~~~l~~~ 40 (182)
-.++++|+||+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
No 499
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.80 E-value=0.0049 Score=46.47 Aligned_cols=22 Identities=5% Similarity=-0.071 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHhhcC
Q 030122 19 LGFSFFIDNFGNLCDTDRLQMG 40 (182)
Q Consensus 19 ~i~viG~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 500
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.79 E-value=0.0064 Score=48.20 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.1
Q ss_pred ceeEEEEEecCCCChHHHHHHhh
Q 030122 16 THVLGFSFFIDNFGNLCDTDRLQ 38 (182)
Q Consensus 16 ~~~~i~viG~~~~GKssl~~~l~ 38 (182)
...-|+++|.+||||||+.++|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
Done!