BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030123
         (182 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 9/132 (6%)

Query: 39  NLQFYFHDTL-SGKNP----SAVRIAQ---AIDTDRSRTLFGIVMMVDDPLTETPDPQSK 90
           NL FYFHD L +GKN     SA+  A    ++     ++ FG +++ DDP+T +    SK
Sbjct: 33  NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSK 92

Query: 91  LVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMPIVGGTGF 150
            VGRAQG Y    ++  +  +S +FV ++  ++  +I+  G +  +   R++ + GGTG 
Sbjct: 93  QVGRAQGFYIYDTKNTYTSWLSFTFV-LNSTHHQGTITFAGADPIVAKTRDISVTGGTGD 151

Query: 151 FRLARGYAVAQT 162
           F + RG A   T
Sbjct: 152 FFMHRGIATITT 163


>sp|Q50940|CAH_NEIGO Carbonic anhydrase OS=Neisseria gonorrhoeae GN=cah PE=1 SV=2
          Length = 252

 Score = 32.0 bits (71), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 1  MAKLSAVVLLLISRLVAAAAIQTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQ 60
          + +L+AV+LL  +   AAA      W      + E+  NL   F    +GKN S V I +
Sbjct: 8  LPRLTAVLLLACTAFSAAAHGNHTHWGYTGHDSPESWGNLSEEFRLCSTGKNQSPVNITE 67

Query: 61 AI 62
           +
Sbjct: 68 TV 69


>sp|Q98HL0|MNMA_RHILO tRNA-specific 2-thiouridylase MnmA OS=Rhizobium loti (strain
           MAFF303099) GN=mnmA PE=3 SV=2
          Length = 396

 Score = 31.6 bits (70), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 22  QTVTWATRLESAKETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDRSRT--LFGIVMMVDD 79
           QTV +A  L +AKE   +     H   SG N +   + + +D DR ++  LF       D
Sbjct: 114 QTVKFADLLATAKELGADALATGHYIRSGANGAHRALYRPVDADRDQSYFLFATTQAQID 173

Query: 80  ----PLTETPDPQSKLVGRAQGLYGSACQD 105
               PL     PQ + +    GL  +A QD
Sbjct: 174 YLRFPLGGLSKPQVRAIAEEMGLTVAAKQD 203


>sp|B0CEJ2|CINAL_ACAM1 CinA-like protein OS=Acaryochloris marina (strain MBIC 11017)
          GN=AM1_1941 PE=3 SV=1
          Length = 419

 Score = 30.8 bits (68), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 43 YFHDTLSGKNPSAVRIAQAIDTDRSRTLF---GIVMMVDDPLTET 84
          +FH T+ G NP+ ++ A A+   RS+ L    G+    DD  TET
Sbjct: 38 HFHQTVVGDNPTRIKRAIALACQRSQLLIFTGGLGPTPDDLTTET 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,515,507
Number of Sequences: 539616
Number of extensions: 2407087
Number of successful extensions: 4364
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4359
Number of HSP's gapped (non-prelim): 7
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)