Query 030123
Match_columns 182
No_of_seqs 123 out of 539
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 7E-54 1.5E-58 339.1 19.2 144 36-182 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.7 0.0014 3.1E-08 53.0 12.3 120 34-165 4-127 (176)
3 PLN02343 allene oxide cyclase 96.8 0.033 7.2E-07 46.8 11.9 90 69-165 85-178 (229)
4 PF11528 DUF3224: Protein of u 81.2 23 0.0005 27.8 9.5 87 89-180 40-131 (134)
5 PF07172 GRP: Glycine rich pro 67.5 4.5 9.7E-05 30.0 2.2 23 1-26 1-23 (95)
6 PF15240 Pro-rich: Proline-ric 28.1 36 0.00079 28.2 1.6 13 14-26 5-17 (179)
7 PF15284 PAGK: Phage-encoded v 21.6 1.3E+02 0.0028 20.8 3.1 31 1-32 1-31 (61)
8 COG5510 Predicted small secret 20.9 1.3E+02 0.0027 19.5 2.7 21 1-21 1-21 (44)
9 PF08239 SH3_3: Bacterial SH3 20.4 75 0.0016 19.8 1.7 17 80-96 4-20 (55)
10 PF06347 SH3_4: Bacterial SH3 18.5 73 0.0016 20.2 1.3 17 80-96 6-22 (55)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=7e-54 Score=339.11 Aligned_cols=144 Identities=51% Similarity=0.853 Sum_probs=136.0
Q ss_pred CeeEEEEEeeeeCCCCCcceEEEeeccCCCCCCCcceeEEEEecccccCCCCCCCceeeeEEEEEEecCCCceEEEEEEE
Q 030123 36 TTTNLQFYFHDTLSGKNPSAVRIAQAIDTDRSRTLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSF 115 (182)
Q Consensus 36 ~~t~l~fY~Hd~~sg~n~ta~~Va~~~~~~~~~~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s~~~~~~~~~~~~ 115 (182)
|++||+|||||+++|||+|++.|++++.+.. .+||+++|+||||||||+++||+||||||+|+.+++++.+|++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~--~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~ 78 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSS--SGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL 78 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCC--CCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence 6899999999999999999999998875432 38999999999999999999999999999999999999999999999
Q ss_pred EEccCCcCCceeEEecCcCCCCCceeeeEeeccccccceEEEEEEEEEeecCCCCCeEEEEEEEEEC
Q 030123 116 VFVDGPYNGSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAVAQTHWMDFKTGDAIVGYNVTVVH 182 (182)
Q Consensus 116 vF~~g~~~GStl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~d~~~~~~i~e~~V~v~h 182 (182)
+|++++||||||+++|+++..+++||||||||||+|||||||++++++ .+..+.++|+|||||++|
T Consensus 79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999 345689999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.66 E-value=0.0014 Score=53.02 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCCeeEEEEEeeeeCCCCCcceEEEeeccCCCCCCCcceeEEEEecccccCCCCCCCceeeeEEEEEEecC----CCceE
Q 030123 34 KETTTNLQFYFHDTLSGKNPSAVRIAQAIDTDRSRTLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSACQ----DQLSL 109 (182)
Q Consensus 34 ~~~~t~l~fY~Hd~~sg~n~ta~~Va~~~~~~~~~~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s~----~~~~~ 109 (182)
..|...|++|=-+....-.|.-.++- .......|..+-|.|+|.+|.- -+.+|--+|+-+.-.. .+-.+
T Consensus 4 p~kvqel~vyeiNErdR~SPa~L~ls-----~k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGSPAYLRLS-----QKSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S--S--B--S-----SSSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccCCCcEEEcc-----cccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 35667777774443322122223331 2233568999999999999975 6889999999775432 33345
Q ss_pred EEEEEEEEccCCcCCceeEEecCcCCCCCceeeeEeeccccccceEEEEEEEEEee
Q 030123 110 IMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMPIVGGTGFFRLARGYAVAQTHWM 165 (182)
Q Consensus 110 ~~~~~~vF~~g~~~GStl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 165 (182)
=-.+++.|.+ | | .|+++|..-..+ ..-++|.||||-|+.|+|-++++.+-+
T Consensus 77 EaiySfyfGd--y-G-hISvqGpy~t~e-DtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFGD--Y-G-HISVQGPYLTYE-DTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-GG--G-E-EEEEEEEEETTS--EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEecc--c-c-eEEEeccccccc-ceeEEEeccCceeecceEEEEEEEeec
Confidence 5566777754 3 5 699999986654 468999999999999999999887754
No 3
>PLN02343 allene oxide cyclase
Probab=96.80 E-value=0.033 Score=46.85 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=70.9
Q ss_pred CcceeEEEEecccccCCCCCCCceeeeEEEEEEecC----CCceEEEEEEEEEccCCcCCceeEEecCcCCCCCceeeeE
Q 030123 69 TLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSACQ----DQLSLIMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s~----~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~rE~aV 144 (182)
...|..+-|.+.|+.|. --|.+|--.|+-+.-.. .+-.+=-.+++.|.| | | .|++||..-.-++ .-++|
T Consensus 85 ~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~gDryEa~ySfyfGD--y-G-HisvqGpyltyeD-t~Lai 157 (229)
T PLN02343 85 NALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKKGDRYEAIYSFYFGD--Y-G-HISVQGPYLTYED-TYLAI 157 (229)
T ss_pred ccccceeccccccccch--hhhhhcccceeEEEEEeccccCCceeEEEEEEEecC--c-c-eeEEecccccccc-ceEEe
Confidence 56899999999999886 35778999998775433 334566677888855 4 4 6999999876544 58999
Q ss_pred eeccccccceEEEEEEEEEee
Q 030123 145 VGGTGFFRLARGYAVAQTHWM 165 (182)
Q Consensus 145 VGGTG~Fr~ArGya~~~t~~~ 165 (182)
.||+|-|+.|+|-+++..+-+
T Consensus 158 TGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 158 TGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred ecCcceeecceeEEEEeeeee
Confidence 999999999999998887654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=81.23 E-value=23 Score=27.79 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=50.2
Q ss_pred CCceeeeEEEEEEecC-CCceEEEEEEEEE-ccCCcCCc-eeEEecCcCCCCCceeeeEe--eccccccceEEEEEEEEE
Q 030123 89 SKLVGRAQGLYGSACQ-DQLSLIMSMSFVF-VDGPYNGS-SISLLGNNRAMNPVREMPIV--GGTGFFRLARGYAVAQTH 163 (182)
Q Consensus 89 Sk~VGrAqG~~v~~s~-~~~~~~~~~~~vF-~~g~~~GS-tl~v~G~~~~~~~~rE~aVV--GGTG~Fr~ArGya~~~t~ 163 (182)
-.+.|++++-|+.+-. ++...++.+.-+= .-+..+|| .|+-.|.........+|-|| -|||++...+|-..++..
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~GsFvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~~ 119 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGSFVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITID 119 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEEC
Confidence 3467888888876644 4444444443211 11224564 23334444333445789999 999999999999887742
Q ss_pred eecCCCCCeEEEEEEEE
Q 030123 164 WMDFKTGDAIVGYNVTV 180 (182)
Q Consensus 164 ~~d~~~~~~i~e~~V~v 180 (182)
. +...++|+..+
T Consensus 120 ~-----g~h~y~f~y~l 131 (134)
T PF11528_consen 120 E-----GQHAYDFEYTL 131 (134)
T ss_dssp T-----TCEEEEEEEEE
T ss_pred C-----CCceeeEEEEC
Confidence 2 44577777765
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.47 E-value=4.5 Score=30.04 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=10.2
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhhh
Q 030123 1 MAKLSAVVLLLISRLVAAAAIQTVTW 26 (182)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (182)
|+-+++ ++|.|++|+++.+||..
T Consensus 1 MaSK~~---llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAF---LLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHH---HHHHHHHHHHHHHHhhh
Confidence 775543 23333444444444444
No 6
>PF15240 Pro-rich: Proline-rich
Probab=28.13 E-value=36 Score=28.20 Aligned_cols=13 Identities=15% Similarity=-0.077 Sum_probs=5.4
Q ss_pred HHHHHHhhhhhhh
Q 030123 14 RLVAAAAIQTVTW 26 (182)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (182)
||.+|++|+||.=
T Consensus 5 LLSvALLALSSAQ 17 (179)
T PF15240_consen 5 LLSVALLALSSAQ 17 (179)
T ss_pred HHHHHHHHhhhcc
Confidence 3334444444433
No 7
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.59 E-value=1.3e+02 Score=20.76 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=15.2
Q ss_pred CcchhHHHHHHHHHHHHHHhhhhhhhhccccC
Q 030123 1 MAKLSAVVLLLISRLVAAAAIQTVTWATRLES 32 (182)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (182)
|.|..-+ ++.+++.++++...++..+++..+
T Consensus 1 Mkk~ksi-fL~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 1 MKKFKSI-FLALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred ChHHHHH-HHHHHHHHHHhhhhHHHHHHhhCC
Confidence 5554432 234444455555555666554443
No 8
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.94 E-value=1.3e+02 Score=19.50 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=9.2
Q ss_pred CcchhHHHHHHHHHHHHHHhh
Q 030123 1 MAKLSAVVLLLISRLVAAAAI 21 (182)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (182)
|.|....+++++++.....++
T Consensus 1 mmk~t~l~i~~vll~s~llaa 21 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAA 21 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 455544434444443333344
No 9
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.36 E-value=75 Score=19.84 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=13.7
Q ss_pred ccccCCCCCCCceeeeE
Q 030123 80 PLTETPDPQSKLVGRAQ 96 (182)
Q Consensus 80 ~ltegp~~~Sk~VGrAq 96 (182)
.|+.+|+.+|++++.++
T Consensus 4 nvR~~p~~~s~~i~~l~ 20 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQLP 20 (55)
T ss_dssp EEESSSSTTSTEEEEEE
T ss_pred EEEeCCCCCChhhEEEe
Confidence 37789999999998763
No 10
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=18.51 E-value=73 Score=20.24 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=0.0
Q ss_pred ccccCCCCCCCceeeeE
Q 030123 80 PLTETPDPQSKLVGRAQ 96 (182)
Q Consensus 80 ~ltegp~~~Sk~VGrAq 96 (182)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Done!