Query 030123
Match_columns 182
No_of_seqs 123 out of 539
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 4.6E-07 1.6E-11 72.9 14.5 102 68-181 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 7E-06 2.4E-10 66.3 13.0 90 69-165 51-144 (195)
3 2q03_A Uncharacterized protein 42.9 1E+02 0.0036 23.1 8.5 87 89-179 45-136 (138)
4 2ooj_A Hypothetical protein; s 27.8 1.9E+02 0.0066 21.7 12.1 84 89-179 41-132 (141)
5 3h6j_A Neuraminidase, sialidas 24.8 57 0.0019 27.7 3.5 58 103-162 369-436 (438)
6 2kq8_A Cell WALL hydrolase; GF 14.7 55 0.0019 21.0 1.0 16 80-95 13-28 (70)
7 2krs_A Probable enterotoxin; a 14.1 80 0.0027 20.5 1.7 16 80-95 12-27 (74)
8 2kt8_A Probable surface protei 12.5 1.2E+02 0.004 19.9 2.1 16 80-95 14-29 (76)
9 2xdp_A Lysine-specific demethy 8.6 4.2E+02 0.015 19.4 4.2 56 68-143 64-119 (123)
10 2lcd_A AT-rich interactive dom 11.0 82 0.0028 23.4 0.0 25 111-135 84-111 (118)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.71 E-value=4.6e-07 Score=72.92 Aligned_cols=102 Identities=23% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCcceeEEEEecccccCCCCCCCceeeeEEEEEEec----CCCceEEEEEEEEEccCCcCCceeEEecCcCCCCCceeee
Q 030123 68 RTLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLIMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 68 ~~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~rE~a 143 (182)
...-|..+.|+++|.+|.. -+.||.-+|+-+... +.+..+-..+++.|.+. | .|+++|..... +..-++
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceee
Confidence 3458999999999997654 589999999987664 33456777778888652 4 69999996444 346899
Q ss_pred EeeccccccceEEEEEEEEEeecCCCCCeEEEEEEEEE
Q 030123 144 IVGGTGFFRLARGYAVAQTHWMDFKTGDAIVGYNVTVV 181 (182)
Q Consensus 144 VVGGTG~Fr~ArGya~~~t~~~d~~~~~~i~e~~V~v~ 181 (182)
|.||||.|+.|+|.+.++++.+. .-++|.+|+.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 99999999999999999998753 2377888774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.38 E-value=7e-06 Score=66.32 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=71.0
Q ss_pred CcceeEEEEecccccCCCCCCCceeeeEEEEEEec----CCCceEEEEEEEEEccCCcCCceeEEecCcCCCCCceeeeE
Q 030123 69 TLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSAC----QDQLSLIMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~rE~aV 144 (182)
...|..+.|+++|.+|.. -+-||...|+-+... +.+..+--.+++.|.+ .| +|+++|..-..+ ..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~e-Ds~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYITYE-DSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEETTB-CEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceeccC-ceeEEE
Confidence 459999999999999986 678999999987653 2233444566777865 36 699999975543 357999
Q ss_pred eeccccccceEEEEEEEEEee
Q 030123 145 VGGTGFFRLARGYAVAQTHWM 165 (182)
Q Consensus 145 VGGTG~Fr~ArGya~~~t~~~ 165 (182)
+||||.|+.|+|-+++..+-+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999998887664
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=42.95 E-value=1e+02 Score=23.12 Aligned_cols=87 Identities=20% Similarity=0.120 Sum_probs=51.1
Q ss_pred CCceeeeEEEEEEecC-CCceEEEEEEEEE-ccCCcCCc-eeEEecCcCCCCCceeeeEee--ccccccceEEEEEEEEE
Q 030123 89 SKLVGRAQGLYGSACQ-DQLSLIMSMSFVF-VDGPYNGS-SISLLGNNRAMNPVREMPIVG--GTGFFRLARGYAVAQTH 163 (182)
Q Consensus 89 Sk~VGrAqG~~v~~s~-~~~~~~~~~~~vF-~~g~~~GS-tl~v~G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~t~ 163 (182)
-.+.|+.++-++.+-. ++...++.+..+= .-+..+|| .|+-.|..........+-||= |||++...+|-..++..
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 3467888888876654 4444444332111 11223454 234444444444457888998 99999999999988642
Q ss_pred eecCCCCCeEEEEEEE
Q 030123 164 WMDFKTGDAIVGYNVT 179 (182)
Q Consensus 164 ~~d~~~~~~i~e~~V~ 179 (182)
. ++..-++|+..
T Consensus 125 ~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 125 E----NGQANYQITLQ 136 (138)
T ss_dssp S----TTEEEEEEEEE
T ss_pred c----CCceEEEEEEe
Confidence 1 24445666554
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=27.75 E-value=1.9e+02 Score=21.65 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=50.2
Q ss_pred CCceeeeEEEEEEecC--CCceEEEEEE---EEEccCCcCCc-eeEEecCcCCCCCceeeeEee--ccccccceEEEEEE
Q 030123 89 SKLVGRAQGLYGSACQ--DQLSLIMSMS---FVFVDGPYNGS-SISLLGNNRAMNPVREMPIVG--GTGFFRLARGYAVA 160 (182)
Q Consensus 89 Sk~VGrAqG~~v~~s~--~~~~~~~~~~---~vF~~g~~~GS-tl~v~G~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~ 160 (182)
-.+.|+.++-++.+-. ++...++.+. -.+. ..+|| .|+-.|..........+-||= |||++...+|-..+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~--Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLC--GRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEET--TEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEC--CceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 3467778888887655 3444444432 2222 23454 334445555445568899998 99999999999988
Q ss_pred EEEeecCCCCCeEEEEEEE
Q 030123 161 QTHWMDFKTGDAIVGYNVT 179 (182)
Q Consensus 161 ~t~~~d~~~~~~i~e~~V~ 179 (182)
+.. + +..-++||..
T Consensus 119 ~~~--~---G~h~y~ldy~ 132 (141)
T 2ooj_A 119 SIE--N---GQHFYEFSFC 132 (141)
T ss_dssp EEE--T---TEEEEEEEEE
T ss_pred EEc--C---CeEEEEEEEE
Confidence 642 2 4444555544
No 5
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=24.82 E-value=57 Score=27.71 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=36.3
Q ss_pred cCCCceEEEEEEEEEccCCcCCceeEEe-cCcCCCCCceeeeEeeccccc---------cceEEEEEEEE
Q 030123 103 CQDQLSLIMSMSFVFVDGPYNGSSISLL-GNNRAMNPVREMPIVGGTGFF---------RLARGYAVAQT 162 (182)
Q Consensus 103 s~~~~~~~~~~~~vF~~g~~~GStl~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArGya~~~t 162 (182)
+.....|-..|--.|++|.++||--++- |..... ...-+-|=|||.| |.|.||...+.
T Consensus 369 ssspstwnivmpsyfndgghkgsgaqvevgslnir--lgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 369 SSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIR--LGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SSSCSCCEECCCEEEESSSEEEESEEEEECSSEEE--EEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred cCCCcceeEeccceecCCCcCCccceEEeeeEEEE--eccCceeeeccccccccchhhheeccceEEEEe
Confidence 3344567778888999999999855442 222111 1222445678877 67888876653
No 6
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=14.69 E-value=55 Score=21.03 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.7
Q ss_pred ccccCCCCCCCceeee
Q 030123 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~ltegp~~~Sk~VGrA 95 (182)
.|+.+|+.+++++|+.
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999875
No 7
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=14.15 E-value=80 Score=20.52 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=14.0
Q ss_pred ccccCCCCCCCceeee
Q 030123 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~ltegp~~~Sk~VGrA 95 (182)
.|+.+|+.+++++|.+
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 5889999999999876
No 8
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=12.48 E-value=1.2e+02 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.1
Q ss_pred ccccCCCCCCCceeee
Q 030123 80 PLTETPDPQSKLVGRA 95 (182)
Q Consensus 80 ~ltegp~~~Sk~VGrA 95 (182)
.|+.+|+.+++++|..
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5789999999888764
No 9
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=8.63 E-value=4.2e+02 Score=19.43 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCcceeEEEEecccccCCCCCCCceeeeEEEEEEecCCCceEEEEEEEEEccCCcCCceeEEecCcCCCCCceeee
Q 030123 68 RTLFGIVMMVDDPLTETPDPQSKLVGRAQGLYGSACQDQLSLIMSMSFVFVDGPYNGSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 68 ~~~FG~~~V~Dd~ltegp~~~Sk~VGrAqG~~v~~s~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~rE~a 143 (182)
+..-|+.+-+.|+ +|.-.+++.+|+ .....+++.|++ ||.+ .+-|+.+.....|+|
T Consensus 64 pP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~YtV~FeD----gs~~-~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 64 PPAEGEVVQVKWP--DGKLYGAKYFGS-------------NIAHMYQVEFED----GSQI-AMKREDIYTLDEELP 119 (123)
T ss_dssp CCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEECTT----SCEE-EEEGGGCCCSSSCCC
T ss_pred CCCCCCEEEEEcC--CCCEEeEEEeee-------------eeEEEEEEEECC----CCeE-EecHHHccccccccc
Confidence 4557777777665 666544444443 234567899998 4544 556766655555554
No 10
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=10.96 E-value=82 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=17.6
Q ss_pred EEEEEEEccCC---cCCceeEEecCcCC
Q 030123 111 MSMSFVFVDGP---YNGSSISLLGNNRA 135 (182)
Q Consensus 111 ~~~~~vF~~g~---~~GStl~v~G~~~~ 135 (182)
..+++||++|. .+-++|++.|...+
T Consensus 84 S~YtVVFdDGD~ktLrRt~lclKg~rHF 111 (118)
T 2lcd_A 84 SWYTVVFDDGDERTLRRTSLCLKGERHF 111 (118)
Confidence 34678999983 55667888886544
Done!