BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030126
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 108/168 (64%), Gaps = 37/168 (22%)
Query: 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN 60
MI+LF +K+++KE+ + ++ KK A +LR+ KDI ELNLP+ C ISF + DDL+N
Sbjct: 3 MIKLFSLKQQKKEEEKGSS-----KKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLN 56
Query: 61 FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKL 120
F++ I PDEG+Y++G FVFSF+V YPHD PKVKC+T
Sbjct: 57 FKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET---------------------- 94
Query: 121 ELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
VYHPNIDLEGNV LN+LREDWKPVL IN+IIYGL +LF
Sbjct: 95 ---------MVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLF 133
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 91/140 (65%), Gaps = 32/140 (22%)
Query: 29 AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYP 88
A +LR+ KDI ELNLP+ C ISF + DDL+NF++ I PDEG+Y++G FVFSF+V YP
Sbjct: 6 AAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYP 64
Query: 89 HDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR 148
HD PKVKC+T VYHPNIDLEGNVCLN+LR
Sbjct: 65 HDPPKVKCET-------------------------------XVYHPNIDLEGNVCLNILR 93
Query: 149 EDWKPVLNINTIIYGLYHLF 168
EDWKPVL IN+IIYGL +LF
Sbjct: 94 EDWKPVLTINSIIYGLQYLF 113
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 38/173 (21%)
Query: 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACK---ISFPNGQDD 57
M++L ++++K++++ EN++ P A +RL +D+ L+LP I+ P+ D
Sbjct: 3 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADR 60
Query: 58 LMN--FEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFN 115
+ EV ++PDEGYY G+ F+ + +YP + PKV C K+
Sbjct: 61 SQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKI--------------- 105
Query: 116 HAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
+HPNIDL+GNVCLN+LREDW P L++ +II GL LF
Sbjct: 106 ----------------FHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLF 142
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 40/163 (24%)
Query: 19 TGGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGT 76
T ++ + L K++ EL NLP CK+ FP+ + L F++++ PDEGYYQ G
Sbjct: 4 TASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGK 62
Query: 77 FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI 136
F F EVP Y PKVKC TK ++HPNI
Sbjct: 63 FQFETEVPDAYNMVPPKVKCLTK-------------------------------IWHPNI 91
Query: 137 DLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTVMLD 173
G +CL++LRE W P + +++GL LFT +L+
Sbjct: 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLN 134
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 40/148 (27%)
Query: 34 LHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDA 91
L K++ EL NLP CK+ FP+ + L F++++ PDEGYYQ G F F EVP Y
Sbjct: 19 LVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE-- 149
PKVKC TK ++HPNI G +CL++LRE
Sbjct: 78 PKVKCLTK-------------------------------IWHPNITETGEICLSLLREHS 106
Query: 150 ----DWKPVLNINTIIYGLYHLFTVMLD 173
W P + +++GL LFT +L+
Sbjct: 107 IDGTGWAPTRTLKDVVWGLNSLFTDLLN 134
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ E+ C S DD+ ++ +I PD+ YQ G F P YP A
Sbjct: 8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
P+V TKV YHPNI+ G +CL++L++ W
Sbjct: 68 PRVTFMTKV-------------------------------YHPNINKNGVICLDILKDQW 96
Query: 152 KPVLNINTIIYGLYHLFT 169
P L ++ ++ + L T
Sbjct: 97 SPALTLSRVLLSISSLLT 114
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 70 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 98
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 99 SPALTISKVLLSICSLL 115
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 75 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 103
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 104 SPALTISKVLLSICSLL 120
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHPNID G +CL+VL+ +W P L I T++ + L
Sbjct: 76 -----------------YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA 113
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 83 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 111
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 112 SPALTISKVLLSICSLL 128
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 65 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 93
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 94 SPALTISKVLLSICSLL 110
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 32/115 (27%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+
Sbjct: 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 77
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHPNID G +CL+VL+ +W P L I T++ + L
Sbjct: 78 -----------------YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA 115
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 36/140 (25%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++++L + P +C P G DDL +++ SI P + Y G F S P YP
Sbjct: 6 RIAKELSDLERDPPTSCSAG-PVG-DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
PK+ TK+ YHPNI+ GN+CL++L++
Sbjct: 64 KPPKISFTTKI-------------------------------YHPNINANGNICLDILKD 92
Query: 150 DWKPVLNINTIIYGLYHLFT 169
W P L ++ ++ + L T
Sbjct: 93 QWSPALTLSKVLLSICSLLT 112
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 GPALTISKVLLSICSLL 112
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 34/139 (24%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
R+++++ +L P + + P G DDL +++ +I P + Y G F S P YP
Sbjct: 5 RINRELADLGKDPPSSSSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
PKV T++ YHPNI+ G++CL++LR+
Sbjct: 64 PPKVNFTTRI-------------------------------YHPNINSNGSICLDILRDQ 92
Query: 151 WKPVLNINTIIYGLYHLFT 169
W P L I+ ++ + L T
Sbjct: 93 WSPALTISKVLLSISSLLT 111
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ +L + S DDL +++ +I P E YQ G F + P YP
Sbjct: 8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 68 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 96
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 97 SPALTISKVLLSICSLL 113
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL+ LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDALRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ ++ P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+ K++ +L + S DDL +++ +I P + YQ G F + P YP
Sbjct: 10 RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV TK+ YHPNI+ G++CL++LR W
Sbjct: 70 PKVAFTTKI-------------------------------YHPNINSNGSICLDILRSQW 98
Query: 152 KPVLNINTIIYGLYHLF 168
P L ++ ++ + L
Sbjct: 99 SPALTVSKVLLSICSLL 115
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 15 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 75 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 103
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 104 SPALTISKVLLSICSLL 120
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 13 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 73 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 101
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 102 SPALTISKVLLSICSLL 118
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 4 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++CL++LR W
Sbjct: 64 PKVAFTTRI-------------------------------YHPNINSNGSICLDILRSQW 92
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 93 SPALTISKVLLSICSLL 109
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 23 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
PK+ TK+ YHPNI+ G++CL++LR
Sbjct: 82 PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 110
Query: 151 WKPVLNINTIIYGLYHLF 168
W P L ++ ++ + L
Sbjct: 111 WSPALTVSKVLLSICSLL 128
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 11 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
PK+ TK+ YHPNI+ G++CL++LR
Sbjct: 70 PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 98
Query: 151 WKPVLNINTIIYGLYHLF 168
W P L ++ ++ + L
Sbjct: 99 WSPALTVSKVLLSICSLL 116
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 34/138 (24%)
Query: 33 RLHKDITELNL-PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHD 90
R+ K++++L P A + P G DDL +++ +I P + YQ G F + P YP
Sbjct: 7 RIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
PK+ TK+ YHPNI+ G++CL++LR
Sbjct: 66 PPKIAFTTKI-------------------------------YHPNINSNGSICLDILRSQ 94
Query: 151 WKPVLNINTIIYGLYHLF 168
W P L ++ ++ + L
Sbjct: 95 WSPALTVSKVLLSICSLL 112
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++ L++LR W
Sbjct: 67 PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 95
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 96 SPALTISKVLLSICSLL 112
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 32/115 (27%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHPNID G + L+VL+ +W P L I T++ + L
Sbjct: 76 -----------------YHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA 113
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 8 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++ L++LR W
Sbjct: 68 PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 96
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 97 SPALTISKVLLSICSLL 113
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++ +L+ S DD+ +++ +I P++ Y G F + P YP
Sbjct: 25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV TK+ YHPNI+ +G +CL++L++ W
Sbjct: 85 PKVNFTTKI-------------------------------YHPNINSQGAICLDILKDQW 113
Query: 152 KPVLNINTIIYGLYHLFT 169
P L I+ ++ + L T
Sbjct: 114 SPALTISKVLLSISSLLT 131
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++ L++LR W
Sbjct: 64 PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 92
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 93 SPALKISKVLLSICSLL 109
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R+HK++ +L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++ L++LR W
Sbjct: 83 PKVAFTTRI-------------------------------YHPNINSNGSIXLDILRSQW 111
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 112 SPALTISKVLLSICSLL 128
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+HK++ +L + P C+ P G DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RIHKELNDLARDPPAQCRAG-PVG-DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
PKV T++ YHP I+ G++ L++LR
Sbjct: 63 KPPKVAFTTRI-------------------------------YHPAINSNGSISLDILRS 91
Query: 150 DWKPVLNINTIIYGLYHLF 168
W P L I+ ++ + L
Sbjct: 92 QWSPALTISKVLLSICSLL 110
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
R++K++++L + S DD+ +++ +I P++ YQ G F + P YP
Sbjct: 5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
PKV T++ YHPNI+ G++ L++LR W
Sbjct: 65 PKVAFTTRI-------------------------------YHPNINSNGSISLDILRSQW 93
Query: 152 KPVLNINTIIYGLYHLF 168
P L I+ ++ + L
Sbjct: 94 SPALTISKVLLSICSLL 110
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 32/115 (27%)
Query: 56 DDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
D+L F+V+I+ P++ Y++G F +P YP +APKV+ TK+
Sbjct: 30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-------------- 75
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHP ID G + L+VL+ +W P L I T++ + L
Sbjct: 76 -----------------YHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA 113
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 36/139 (25%)
Query: 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++++L + P C+ P G DDL +++ +I P + YQ G F + P YP
Sbjct: 11 RIQKELSDLQRDPPAHCRAG-PVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
PK+ TK +YHPNI+ G++ L++LR
Sbjct: 69 KPPKIAFTTK-------------------------------IYHPNINSNGSIKLDILRS 97
Query: 150 DWKPVLNINTIIYGLYHLF 168
W P L ++ ++ + L
Sbjct: 98 QWSPALTVSKVLLSICSLL 116
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + ++ GTF +P YP APKV+ TK+
Sbjct: 42 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 75
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
YHPN+D G +CL++L++ W P L I T++ + L +
Sbjct: 76 -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 114
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + ++ GTF +P YP APKV+ TK+
Sbjct: 47 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 80
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
YHPN+D G +CL++L++ W P L I T++ + L +
Sbjct: 81 -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 119
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + ++ GTF +P YP APKV+ TK+
Sbjct: 44 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 77
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
YHPN+D G +CL++L++ W P L I T++ + L +
Sbjct: 78 -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + ++ GTF +P YP APKV+ TK+
Sbjct: 45 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 78
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
YHPN+D G +CL++L++ W P L I T++ + L +
Sbjct: 79 -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 117
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 31/104 (29%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + ++ GTF +P YP APKV+ TK+
Sbjct: 40 PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170
YHPN+D G +CL++L++ W P L I T++ + L +
Sbjct: 74 -----YHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 112
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
PD Y+ GT+ +P YP + PKV+ TK+
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHPNID G +CL++L++ W P L I T++ + L +
Sbjct: 74 -----YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
PD Y+ GT+ +P YP + PKV+ TK+
Sbjct: 40 PDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
YHPNID G +CL++L++ W P L I T++ + L +
Sbjct: 74 -----YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 111
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 39/144 (27%)
Query: 29 AGELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
A RL K++ E+ C + +F N Q D L+ ++ I PD Y G F P
Sbjct: 2 AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 58
Query: 85 PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL 144
YP PK+ KTK+ YHPNID +G VCL
Sbjct: 59 AEYPFKPPKITFKTKI-------------------------------YHPNIDEKGQVCL 87
Query: 145 NVLR-EDWKPVLNINTIIYGLYHL 167
V+ E+WKP + +I L L
Sbjct: 88 PVISAENWKPATKTDQVIQSLIAL 111
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 39/144 (27%)
Query: 29 AGELRLHKDITELNLPEACKI-SFPNGQDD---LMNFEVSIKPDEGYYQNGTFVFSFEVP 84
A RL K++ E+ C + +F N Q D L+ ++ I PD Y G F P
Sbjct: 4 AASRRLMKELEEIR---KCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 60
Query: 85 PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL 144
YP PK+ KTK+ YHPNID +G VCL
Sbjct: 61 AEYPFKPPKITFKTKI-------------------------------YHPNIDEKGQVCL 89
Query: 145 NVLR-EDWKPVLNINTIIYGLYHL 167
V+ E+WKP + +I L L
Sbjct: 90 PVISAENWKPATKTDQVIQSLIAL 113
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 36/140 (25%)
Query: 33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++ E+ L P C + P G D++ + +I P Y+ G F P YP
Sbjct: 7 RIQKELAEITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
PKV +T++ YH NI+ +G +CL++L++
Sbjct: 65 KPPKVTFRTRI-------------------------------YHCNINSQGVICLDILKD 93
Query: 150 DWKPVLNINTIIYGLYHLFT 169
+W P L I+ ++ + L T
Sbjct: 94 NWSPALTISKVLLSICSLLT 113
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
RL +D +L +S +D+++ +E I P E +++GTF S E YP+
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
P VK +K+ +HPN+ +G++CL++L+ W
Sbjct: 71 PTVKFISKM-------------------------------FHPNVYADGSICLDILQNRW 99
Query: 152 KPVLNINTIIYGLYHLF 168
P ++ I+ + L
Sbjct: 100 SPTYDVAAILTSIQSLL 116
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 33 RLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDA 91
RL +D +L +S +D+++ +E I P E +++GTF S E YP+
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 92 PKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDW 151
P VK +K+ +HPN+ +G++CL++L+ W
Sbjct: 68 PTVKFISKM-------------------------------FHPNVYADGSICLDILQNRW 96
Query: 152 KPVLNINTIIYGLYHLF 168
P ++ I+ + L
Sbjct: 97 SPTYDVAAILTSIQSLL 113
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 36/140 (25%)
Query: 33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPH 89
R+ K++ ++ L P C + P G D++ + +I P Y+ G F P YP
Sbjct: 52 RIQKELADITLDPPPNCS-AGPKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 90 DAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE 149
PKV +T++ YH NI+ +G +CL++L++
Sbjct: 110 KPPKVTFRTRI-------------------------------YHCNINSQGVICLDILKD 138
Query: 150 DWKPVLNINTIIYGLYHLFT 169
+W P L I+ ++ + L T
Sbjct: 139 NWSPALTISKVLLSICSLLT 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 22 TPVKKQCAGELRLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIK-PDEGYYQNGTFVF 79
T K++ + RL +++ L + I+ FP+G D+L + ++ P + Y++ +
Sbjct: 2 TTSKERHSVSKRLQQELRTLLMSGDPGITAFPDG-DNLFKWVATLDGPKDTVYESLKYKL 60
Query: 80 SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
+ E P YP+ P VK T +HPN+D
Sbjct: 61 TLEFPSDYPYKPPVVKFTTPC-------------------------------WHPNVDQS 89
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
GN+CL++L+E+W ++ TI+ L L
Sbjct: 90 GNICLDILKENWTASYDVRTILLSLQSLL 118
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 15 AENNTGGTPVKKQCAGEL--RLHKDITELNLPEACKIS-FPNGQDDLMNFEVSIKPDEGY 71
A G P G + RL +++ L + IS FP D+L + +I G
Sbjct: 14 AAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGT 72
Query: 72 -YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQ 130
Y++ + S E P YP++AP VK FL
Sbjct: 73 VYEDLRYKLSLEFPSGYPYNAPTVK--------FLT-----------------------P 101
Query: 131 VYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
YHPN+D +GN+ L++L+E W + ++ TI+ + L
Sbjct: 102 CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 33/140 (23%)
Query: 32 LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
LRL K++ ++ +I + + IK EG Y+ G F + +P YP++
Sbjct: 26 LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNVCLNVLRE 149
PK+K TK+ +HPNI + G +CL+VL+
Sbjct: 86 PPKIKFVTKI-------------------------------WHPNISSQTGAICLDVLKN 114
Query: 150 DWKPVLNINTIIYGLYHLFT 169
+W P L I T + + L +
Sbjct: 115 EWSPALTIRTALLSIQALLS 134
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 34/119 (28%)
Query: 53 NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML 111
+G DL +E I EG + G + + E P YP PKVK F F
Sbjct: 35 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVK-------FPAGF---- 83
Query: 112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
YHPN+ G +CL++L E DW+P + + I+ G+ L
Sbjct: 84 --------------------YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 34/119 (28%)
Query: 53 NGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML 111
+G DL +E I EG + G + + E P YP PKVK F F
Sbjct: 33 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVK-------FPAGF---- 81
Query: 112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
YHPN+ G +CL++L E DW+P + + I+ G+ L
Sbjct: 82 --------------------YHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 80 --------------FEPPL--FHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 32/98 (32%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
Y+ G FV EVP YP PK++ TKV
Sbjct: 47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKV------------------------------- 75
Query: 132 YHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
YHPNI + G +CL++LR W PV+ + + + L L
Sbjct: 76 YHPNISSVTGAICLDILRNAWSPVITLKSALISLQALL 113
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 32/99 (32%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
Y+ G F +PP YP++ PK+K TK+
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKI------------------------------- 117
Query: 132 YHPNIDLE-GNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
+HPNI + G +CL++L+ +W P L I T + + +
Sbjct: 118 WHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLA 156
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 38/149 (25%)
Query: 21 GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
TP +K RL +D L IS +++M + I PD+ + GTF
Sbjct: 2 STPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 80 SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
S + YP+ P V+ F+ +++HPNI +
Sbjct: 56 SLQFSEDYPNKPPTVR-----------FVS--------------------RMFHPNIYAD 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
G++CL++L+ W P+ ++ I+ + L
Sbjct: 85 GSICLDILQNQWSPIYDVAAILTSIQSLL 113
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 80 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 77
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 78 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 121
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 80 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 77 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 78
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 79 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 80 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 78
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 79 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 81
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G VCL++L E DW+P + I I+ G+ L
Sbjct: 82 --------------FEPPL--FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 125
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 32/98 (32%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
Y+ G FV EVP YP PK++ TKV
Sbjct: 46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKV------------------------------- 74
Query: 132 YHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLF 168
YHPNI + G +CL++L+ W PV+ + + + L L
Sbjct: 75 YHPNISSVTGAICLDILKNAWSPVITLKSALISLQALL 112
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 36/131 (27%)
Query: 34 LHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHD 90
++K++T L P+ K+ FPN ++DL + +V+I+ EG Y G F + +P
Sbjct: 18 VYKEVTTLTADPPDGIKV-FPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 91 APKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED 150
PK +FL +++HPN+ G +C+NVL+ D
Sbjct: 76 PPKG--------YFLT-----------------------KIFHPNVGANGEICVNVLKRD 104
Query: 151 WKPVLNINTII 161
W L I ++
Sbjct: 105 WTAELGIRHVL 115
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 79
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HP + G VCL++L E DW+P + I I+ G+ L
Sbjct: 80 --------------FEPPL--FHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 38/149 (25%)
Query: 21 GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
TP ++ RL +D L +S ++++M + I P+ +++GTF
Sbjct: 2 STPARR------RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 80 SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
E YP+ P V+ +K+ +HPN+ +
Sbjct: 56 VIEFSEEYPNKPPTVRFLSKM-------------------------------FHPNVYAD 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
G++CL++L+ W P ++++I+ + L
Sbjct: 85 GSICLDILQNRWSPTYDVSSILTSIQSLL 113
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 45 EACKISFPNGQDDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI 102
+ CK S +G DLMN++V I KP + + G + + P YP PK C+ +
Sbjct: 33 KPCKSS--DGGLDLMNWKVGIPGKPKTSW-EGGLYKLTMAFPEEYPTRPPK--CRFTPPL 87
Query: 103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTI 160
F HPN+ G VCL++L E+ WKP + I I
Sbjct: 88 F-----------------------------HPNVYPSGTVCLSILNEEEGWKPAITIKQI 118
Query: 161 IYGLYHLF 168
+ G+ L
Sbjct: 119 LLGIQDLL 126
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 45/128 (35%)
Query: 56 DDLMNFEV-SIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLF 114
+D+ +EV I P + Y+ G F + P YP PK+K FI
Sbjct: 31 NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMK-----------FIS----- 74
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTII 161
+++HPNID EGNVC+++L E W PV + TI+
Sbjct: 75 ---------------EIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETIL 119
Query: 162 YGLYHLFT 169
+ + T
Sbjct: 120 LSVISMLT 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 35/102 (34%)
Query: 72 YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV 131
Y+ G F +P YP + P+++ FL I
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIR--------FLTPI----------------------- 76
Query: 132 YHPNIDLEGNVCLNVL----REDWKPVLNINTIIYGLYHLFT 169
YHPNID G +CL+VL + W+P LNI T++ + L +
Sbjct: 77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMS 118
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 38/149 (25%)
Query: 21 GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVF 79
TP ++ RL +D + +S D++M + I P + Y++GTF
Sbjct: 2 STPARR------RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRL 55
Query: 80 SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE 139
E YP+ P VK FL+ +++HPN+
Sbjct: 56 LLEFDEEYPNKPPHVK--------FLS-----------------------EMFHPNVYAN 84
Query: 140 GNVCLNVLREDWKPVLNINTIIYGLYHLF 168
G +CL++L+ W P ++ +I+ + LF
Sbjct: 85 GEICLDILQNRWTPTYDVASILTSIQSLF 113
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G V L++L E DW+P + I I+ G+ L
Sbjct: 77 --------------FEPPL--FHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 52 PNGQDDLMNFEVSIKPDEGY-YQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P+G +LMN+E +I +G ++ G F YP PK K
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK--------------- 76
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLF 168
FE L +HPN+ G V L++L E DW+P + I I+ G+ L
Sbjct: 77 --------------FEPPL--FHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELL 120
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 37/142 (26%)
Query: 23 PVKKQCAGELR--LHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGY-YQNGTFVF 79
P AG LR +++ + L + + +P+ D + F V K EG Y++GT++
Sbjct: 2 PGSMSGAGNLRSNRRREMDYMRLCNSTRKVYPS--DTVAEFWVEFKGPEGTPYEDGTWML 59
Query: 80 SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-L 138
++P YP +P I F N ++ HPN+D
Sbjct: 60 HVQLPSDYPFKSPS--------IGFCN-----------------------RILHPNVDER 88
Query: 139 EGNVCLNVLREDWKPVLNINTI 160
G+VCL+V+ + W P+ + I
Sbjct: 89 SGSVCLDVINQTWTPMYQLENI 110
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 20 GGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEG-YYQNGT 76
G P + + RL K++ L + P ++ + Q+ + + V ++ G Y+
Sbjct: 13 GLVPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEK 72
Query: 77 FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI 136
F F+ YP D+P+V ++T E N+ V HP++
Sbjct: 73 FQLLFKFSSRYPFDSPQV---------------------------MFTGE-NIPV-HPHV 103
Query: 137 DLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT 169
G++CL++L EDW P L++ ++ + + +
Sbjct: 104 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 45/128 (35%)
Query: 55 QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLL 113
+ DL N+EV+I P YY+ G F + P YP+ P + TK
Sbjct: 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK-------------- 79
Query: 114 FNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTI 160
++HPNI G+VC+++L E W P N+ TI
Sbjct: 80 -----------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 161 IYGLYHLF 168
+ + L
Sbjct: 123 LLSVISLL 130
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 45/128 (35%)
Query: 55 QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLL 113
+ DL N+EV+I P YY+ G F + P YP+ P + TK
Sbjct: 31 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK-------------- 76
Query: 114 FNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTI 160
++HPNI G+VC+++L E W P N+ TI
Sbjct: 77 -----------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 119
Query: 161 IYGLYHLF 168
+ + L
Sbjct: 120 LLSVISLL 127
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Query: 59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
+ E++ PD Y + G + ++P YP + PKV+ TK+
Sbjct: 56 LRGEIAGPPDTPY-EGGRYQLEIKIPETYPFNPPKVRFITKI------------------ 96
Query: 119 KLELYTFESNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
+HPNI + G +CL++L++ W + + T+
Sbjct: 97 -------------WHPNISSVTGAICLDILKDQWAAAMTLRTV 126
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + Y+ G + ++P YP + PKV+ TK+
Sbjct: 99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 132
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
+HPNI + G +CL++L++ W + + T+
Sbjct: 133 -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + Y+ G + ++P YP + PKV+ TK+
Sbjct: 48 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 81
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
+HPNI + G +CL++L++ W + + T+
Sbjct: 82 -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 32/95 (33%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + Y+ G + ++P YP + PKV+ TK+
Sbjct: 47 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI-------------------------- 80
Query: 127 SNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
+HPNI + G +CL++L++ W + + T+
Sbjct: 81 -----WHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 33/103 (32%)
Query: 59 MNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAI 118
+ E++ PD Y + G + ++P YP + PKV+ TK+
Sbjct: 43 LRGEIAGPPDTPY-EGGRYQLEIKIPETYPFNPPKVRFITKI------------------ 83
Query: 119 KLELYTFESNLQVYHPNID-LEGNVCLNVLREDWKPVLNINTI 160
+HPNI + G +CL++L++ W + + T+
Sbjct: 84 -------------WHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 32/99 (32%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
PD+ Y F PP YP P +K TK+
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI-------------------------- 76
Query: 127 SNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGL 164
YHPN+D G +CL ++ E+WKP ++ L
Sbjct: 77 -----YHPNVDENGQICLPIISSENWKPCTKTCQVLEAL 110
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 32/99 (32%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
PD+ Y F PP YP P +K TK+
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI-------------------------- 73
Query: 127 SNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGL 164
YHPN+D G +CL ++ E+WKP ++ L
Sbjct: 74 -----YHPNVDENGQICLPIISSENWKPCTKTCQVLEAL 107
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P + DL +E I P + Y+N F EVP YP + PK+ F N I
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS-------FMQNNI-- 91
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLF 168
SN++ G +CLN+L+ E+W PV ++ ++ ++ L
Sbjct: 92 --------------LHSNVK------SATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 50/157 (31%)
Query: 30 GELRLHKDITELNLPEACKISFPNG---QDDLMNFEV-SIKPDEGYYQNGTFVFSFEVPP 85
G L L + + ELN + F G +DL +EV I P + Y+ G F P
Sbjct: 18 GSLLLRRQLAELN--KNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75
Query: 86 IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLN 145
YP PK+K T +++HPN+D G+VC++
Sbjct: 76 DYPLRPPKMKFIT-------------------------------EIWHPNVDKNGDVCIS 104
Query: 146 VL-------------REDWKPVLNINTIIYGLYHLFT 169
+L E W P+ + TI+ + +
Sbjct: 105 ILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P + DL +E I P + Y+N F EVP YP + PK+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI---------------- 84
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNI-DLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLF 168
+F N + H N+ G +CLN+L+ E+W PV ++ ++ ++ L
Sbjct: 85 -------------SFMQN-NILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 52 PNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHM 110
P + DL +E I P + Y+N F EVP YP + PK+
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI---------------- 84
Query: 111 LLLFNHAIKLELYTFESNLQVYHPNI-DLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLF 168
+F N + H N+ G +CLN+L+ E+W PV ++ ++ ++ L
Sbjct: 85 -------------SFMQN-NILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLL 130
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 130 QVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVML 172
++ HPN+D G+VCL+V+ + W P +Y L ++F V L
Sbjct: 70 KLLHPNVDEASGSVCLDVINQTWTP-------LYSLVNVFEVFL 106
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 51/173 (29%)
Query: 17 NNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
++ GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G
Sbjct: 2 SHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 55
Query: 76 TFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPN 135
F P YP PK++ +T E ++HPN
Sbjct: 56 VFPAILSFPLDYPLSPPKMR---------------------------FTCE----MFHPN 84
Query: 136 IDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVMLDHS 175
I +G VC+++L E W PV ++ I+ + + D S
Sbjct: 85 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 137
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 130 QVYHPNID-LEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVML 172
+++HPNID G VCL+V+ + W T +Y L ++F L
Sbjct: 92 KIFHPNIDEASGTVCLDVINQTW-------TALYDLTNIFESFL 128
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 51/170 (30%)
Query: 20 GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFV 78
GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G F
Sbjct: 1 AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 54
Query: 79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL 138
P YP PK++ +T E ++HPNI
Sbjct: 55 AILSFPLDYPLSPPKMR---------------------------FTCE----MFHPNIYP 83
Query: 139 EGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTVMLDHS 175
+G VC+++L E W PV ++ I+ + + D S
Sbjct: 84 DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 133
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 51/173 (29%)
Query: 17 NNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG 75
+ GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G
Sbjct: 1 GHMAGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFG 54
Query: 76 TFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPN 135
F P YP PK++ +T E ++HPN
Sbjct: 55 VFPAILSFPLDYPLSPPKMR---------------------------FTCE----MFHPN 83
Query: 136 IDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVMLDHS 175
I +G VC+++L E W PV ++ I+ + + D S
Sbjct: 84 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 136
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 51/170 (30%)
Query: 20 GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFV 78
GT +K+ A +K +T LN PE ++ P +++ +E I P++ ++ G F
Sbjct: 7 AGTALKRLMAE----YKQLT-LNPPEGI-VAGPMNEENFFEWEALIMGPEDTCFEFGVFP 60
Query: 79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL 138
P YP PK++ +T E ++HPNI
Sbjct: 61 AILSFPLDYPLSPPKMR---------------------------FTCE----MFHPNIYP 89
Query: 139 EGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTVMLDHS 175
+G VC+++L E W PV ++ I+ + + D S
Sbjct: 90 DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDES 139
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 48/157 (30%)
Query: 29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIK-PDEGYYQNGTFVFSFEVPP 85
+ RL K++ +L + P ++ P ++++ ++ I+ P + Y +G F E P
Sbjct: 4 TAQKRLLKELQQLIKDSPPGI-VAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 86 IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLN 145
YP PK+ TF + + HPNI G VC++
Sbjct: 63 DYPLSPPKL-----------------------------TFTPS--ILHPNIYPNGEVCIS 91
Query: 146 VL-------------REDWKPVLNINTIIYGLYHLFT 169
+L E W PV ++ I+ + + +
Sbjct: 92 ILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLS 128
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 51 IGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN 92
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 45 IGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN 86
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 56 IGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN 97
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 46 IGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN 87
>pdb|4GU3|A Chain A, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With The Gm2 Glycan
pdb|4GU3|B Chain B, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With The Gm2 Glycan
pdb|4GU3|C Chain C, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With The Gm2 Glycan
pdb|4GU4|A Chain A, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With Alpha-2,3-Sialyllactose
pdb|4GU4|B Chain B, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With Alpha-2,3-Sialyllactose
pdb|4GU4|C Chain C, Crystal Structure Of The T1l Reovirus Attachment Protein
Sigma1 In Complex With Alpha-2,3-Sialyllactose
Length = 219
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 124 TFESNLQVYHPNIDLEGNVCLNVLR-EDW 151
T+ LQ HP + NV LN+++ +DW
Sbjct: 85 TWTGQLQYQHPQLSWRANVTLNLMKVDDW 113
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 115 NHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE-DWKPVLNINTIIYGLYHLF 168
NH + + F SN + + P E N DWK +L+I T+ +G +HL+
Sbjct: 217 NHLVAVGDEGFFSNYEGFKP-YGGEAEWAYNGWSGVDWKKLLSIETVDFGTFHLY 270
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 44 PEACKISFPNGQDDLMNF--EVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD 101
PE+C + D M + P ++N + S + P YP PKV +K++
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83
Query: 102 IFFLN 106
+ +N
Sbjct: 84 LPCVN 88
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 44 PEACKISFPNGQDDLMNF--EVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD 101
PE+C + D M + P ++N + S + P YP PKV +K++
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 82
Query: 102 IFFLN 106
+ +N
Sbjct: 83 LPCVN 87
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 33/94 (35%)
Query: 67 PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFE 126
P + Y NG F F P YP P +++ H+++
Sbjct: 119 PADTPYANGCFEFDVYFPQDYPSSPP--------------LVNLETTGGHSVR------- 157
Query: 127 SNLQVYHPNIDLEGNVCLNVL-------REDWKP 153
++PN+ +G VCL++L E W P
Sbjct: 158 -----FNPNLYNDGKVCLSILNTWHGRPEEKWNP 186
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 66 IGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 107
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 65 IKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106
I P Y+N + E P YP P V+ TK+++ +N
Sbjct: 76 IGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 117
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 136 IDLEGNVCLNVLREDWKPVLNIN 158
+DL N +N++ ED K V+NIN
Sbjct: 376 VDLSDNDIINIVLEDLKKVMNIN 398
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 76 TFVFSFEVPPIYPHDAPKVKCKTKVDIFFL---NFIHMLLLFNHAIKLELYTFESNLQVY 132
T +FS + IY +K K D + N + +LF+ E T VY
Sbjct: 39 TAIFSVDTDTIYNW---ILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVY 95
Query: 133 HPNIDLEGNVCLNVLREDWKPVLNINTII 161
P + EG +C ++ + W P + + +I
Sbjct: 96 SPLVTGEGGICDRMVNDFWTPDQHASDVI 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,914,739
Number of Sequences: 62578
Number of extensions: 248574
Number of successful extensions: 646
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 173
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)