Query 030126
Match_columns 182
No_of_seqs 126 out of 1139
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.6E-40 5.6E-45 265.6 13.1 119 29-179 5-126 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.4E-40 3E-45 264.5 11.1 117 30-179 2-121 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1E-37 2.2E-42 244.3 11.4 120 27-179 2-124 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 5.4E-37 1.2E-41 245.3 13.5 118 29-179 2-122 (152)
5 KOG0420 Ubiquitin-protein liga 100.0 2.3E-37 5E-42 251.0 11.2 147 1-179 1-149 (184)
6 PLN00172 ubiquitin conjugating 100.0 1.9E-36 4.2E-41 240.7 13.4 117 30-179 2-121 (147)
7 KOG0421 Ubiquitin-protein liga 100.0 9.6E-35 2.1E-39 230.8 10.1 127 21-180 21-150 (175)
8 KOG0425 Ubiquitin-protein liga 100.0 1.4E-33 3.1E-38 226.1 11.8 118 30-179 6-139 (171)
9 KOG0426 Ubiquitin-protein liga 100.0 4.4E-33 9.4E-38 218.8 10.8 121 27-179 2-138 (165)
10 PF00179 UQ_con: Ubiquitin-con 100.0 8.3E-33 1.8E-37 215.5 10.8 115 33-179 1-119 (140)
11 KOG0424 Ubiquitin-protein liga 100.0 2.7E-32 5.8E-37 216.2 11.5 123 27-180 2-132 (158)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 1.9E-31 4.2E-36 208.3 12.7 115 32-179 2-120 (141)
13 KOG0418 Ubiquitin-protein liga 100.0 7.7E-32 1.7E-36 221.4 10.2 116 30-178 4-126 (200)
14 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-30 3.1E-35 204.2 12.5 116 32-179 1-120 (145)
15 KOG0427 Ubiquitin conjugating 100.0 1.7E-28 3.7E-33 192.7 11.1 120 26-178 12-140 (161)
16 KOG0422 Ubiquitin-protein liga 99.9 7.9E-28 1.7E-32 190.0 10.1 120 28-179 1-123 (153)
17 KOG0416 Ubiquitin-protein liga 99.9 2.6E-25 5.6E-30 180.7 7.3 118 29-180 3-123 (189)
18 KOG0894 Ubiquitin-protein liga 99.9 2.4E-24 5.2E-29 180.7 10.8 112 26-172 2-119 (244)
19 KOG0423 Ubiquitin-protein liga 99.9 8.1E-25 1.8E-29 178.8 5.4 120 27-179 8-130 (223)
20 KOG0428 Non-canonical ubiquiti 99.8 1.4E-19 3.1E-24 154.8 8.8 112 25-170 7-122 (314)
21 KOG0895 Ubiquitin-conjugating 99.6 5.6E-16 1.2E-20 152.2 7.4 111 29-170 851-971 (1101)
22 KOG0895 Ubiquitin-conjugating 99.5 1E-13 2.2E-18 136.4 11.2 120 22-171 275-405 (1101)
23 KOG0429 Ubiquitin-conjugating 99.3 7.8E-12 1.7E-16 106.0 9.6 112 32-176 22-139 (258)
24 KOG0896 Ubiquitin-conjugating 99.1 6.7E-10 1.4E-14 87.7 8.4 109 30-170 6-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.3 3.8E-07 8.2E-12 70.6 3.5 64 77-170 13-77 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 1.8E-06 3.9E-11 67.4 6.0 70 73-170 34-106 (133)
27 PF05743 UEV: UEV domain; Int 97.8 2.9E-05 6.3E-10 60.2 5.0 78 66-170 37-117 (121)
28 KOG2391 Vacuolar sorting prote 96.6 0.018 3.9E-07 52.2 9.5 118 26-173 17-140 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.4 0.0022 4.8E-08 51.7 2.7 101 25-161 20-135 (161)
30 PF05773 RWD: RWD domain; Int 94.6 0.1 2.2E-06 37.9 5.5 68 32-100 4-74 (113)
31 PF14457 Prok-E2_A: Prokaryoti 94.0 0.077 1.7E-06 43.2 4.1 64 79-170 57-126 (162)
32 smart00591 RWD domain in RING 93.8 0.45 9.7E-06 34.2 7.5 40 60-99 24-65 (107)
33 KOG3357 Uncharacterized conser 92.8 0.19 4.2E-06 40.3 4.5 67 25-97 23-100 (167)
34 PF14462 Prok-E2_E: Prokaryoti 91.2 1.7 3.7E-05 34.1 8.1 90 56-169 21-120 (122)
35 KOG0309 Conserved WD40 repeat- 78.9 6.8 0.00015 39.6 7.0 67 31-100 422-492 (1081)
36 PF09765 WD-3: WD-repeat regio 74.1 4.4 9.6E-05 35.9 4.0 60 28-95 98-157 (291)
37 KOG4018 Uncharacterized conser 62.5 13 0.00028 31.9 4.3 42 57-99 29-73 (215)
38 cd00421 intradiol_dioxygenase 40.6 40 0.00086 26.5 3.6 26 74-99 65-91 (146)
39 cd03457 intradiol_dioxygenase_ 37.5 46 0.00099 27.6 3.7 27 74-100 86-112 (188)
40 PF06113 BRE: Brain and reprod 30.0 75 0.0016 29.0 4.0 26 74-99 305-330 (333)
41 cd03459 3,4-PCD Protocatechuat 28.5 82 0.0018 25.4 3.7 26 74-99 72-102 (158)
42 PF06113 BRE: Brain and reprod 27.7 1.6E+02 0.0035 26.9 5.7 35 58-97 53-87 (333)
43 PF14460 Prok-E2_D: Prokaryoti 22.8 41 0.00089 27.3 1.0 15 133-147 97-111 (175)
44 TIGR02423 protocat_alph protoc 22.3 1.1E+02 0.0025 25.4 3.5 26 74-99 96-126 (193)
45 KOG4445 Uncharacterized conser 22.2 96 0.0021 28.3 3.2 28 75-102 45-72 (368)
46 KOG0177 20S proteasome, regula 20.7 47 0.001 28.2 0.9 32 139-170 135-166 (200)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=265.57 Aligned_cols=119 Identities=34% Similarity=0.689 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126 29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL 105 (182)
Q Consensus 29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~ 105 (182)
.+.+||++|++++ ..++|+++. +.+++|+++|++.| ||.+||||||.|++.|.||++||++||+|+|.++
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~-p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~------ 77 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAG-PVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK------ 77 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEE-ECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC------
Confidence 3899999999999 445788886 56455999999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
|||||||.+|+||||+|.++|+|+++|++||++|+++|.+||++||+++
T Consensus 78 -------------------------i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~ 126 (153)
T COG5078 78 -------------------------IFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNT 126 (153)
T ss_pred -------------------------CcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCCh
Confidence 9999999999999999999999999999999999999999999999986
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=264.51 Aligned_cols=117 Identities=31% Similarity=0.717 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126 30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106 (182)
Q Consensus 30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~ 106 (182)
+.+||.||++++ ..++||++. ++ ++|+++|+++| ||.+||||||+|++.|.||++||++||+|+|.|+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~-~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk------- 72 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAG-PV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK------- 72 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccC-CC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc-------
Confidence 467999999988 678899997 54 79999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
||||||+..|.||||+|++.|+|++||++||.+|++||.+||++||+++
T Consensus 73 ------------------------IyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~ 121 (148)
T KOG0417|consen 73 ------------------------IYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVP 121 (148)
T ss_pred ------------------------cccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccH
Confidence 9999999999999999999999999999999999999999999999985
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=244.33 Aligned_cols=120 Identities=25% Similarity=0.590 Sum_probs=114.0
Q ss_pred ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
...|.+||.+|++.+ +.+.|++.. |. ++|++.|++.| ||.+|||+||+|++.+.|+++||.+||.|+|.++
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~-P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~---- 75 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAA-PV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK---- 75 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCC-CC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee----
Confidence 457889999999999 567888886 66 79999999999 9999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
+||||||.+|.+|||+|+..|+|.+++.+||.+||+||++|+++||+++
T Consensus 76 ---------------------------mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~ 124 (152)
T KOG0419|consen 76 ---------------------------MFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANS 124 (152)
T ss_pred ---------------------------ccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccH
Confidence 9999999999999999999999999999999999999999999999985
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.4e-37 Score=245.33 Aligned_cols=118 Identities=30% Similarity=0.634 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126 29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL 105 (182)
Q Consensus 29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~ 105 (182)
++.+||++|++++ ..++|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~-~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~------ 73 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAE-PD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK------ 73 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEE-EC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC------
Confidence 5679999999999 567888875 55 68999999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
+|||||+.+|.||+++|.++|+|++||++||.+|++||.+|++++|+++
T Consensus 74 -------------------------i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~ 122 (152)
T PTZ00390 74 -------------------------IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDT 122 (152)
T ss_pred -------------------------CeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999974
No 5
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=250.98 Aligned_cols=147 Identities=59% Similarity=1.046 Sum_probs=137.8
Q ss_pred CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcce--eEEeecCCCCccCCcEEE
Q 030126 1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMN--FEVSIKPDEGYYQNGTFV 78 (182)
Q Consensus 1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~--w~v~igp~~tpYegg~f~ 78 (182)
|++++++++++++.+.+.+. +...++++++.||++|+.++++|++|+++++.+.++++. ++++|.|+++.|+||.|.
T Consensus 1 M~~L~~~~~k~~~~~~~~~~-~~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~ 79 (184)
T KOG0420|consen 1 MIKLFKLKKKKREEEQSRYT-STRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFR 79 (184)
T ss_pred CccHHHHHHhhhhhcccccc-cccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEE
Confidence 89999999988877665544 778889999999999999999999999998887777777 899999999999999999
Q ss_pred EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHH
Q 030126 79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNIN 158 (182)
Q Consensus 79 ~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~ 158 (182)
|.+.+|+.||++||+|+|.|+ +|||||+.+|+|||++|+++|+|+.+|.
T Consensus 80 F~~~v~~~Yp~~PPKVkCltk-------------------------------V~HPNId~~GnVCLnILRedW~P~lnL~ 128 (184)
T KOG0420|consen 80 FKFKVPNAYPHEPPKVKCLTK-------------------------------VYHPNIDLDGNVCLNILREDWRPVLNLN 128 (184)
T ss_pred EEEECCCCCCCCCCeeeeeec-------------------------------cccCCcCCcchHHHHHHHhcCccccchH
Confidence 999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcccc
Q 030126 159 TIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 159 siL~sI~~lL~~P~~~sp~~~ 179 (182)
+|+.++++|+.+|+++|||+-
T Consensus 129 sIi~GL~~LF~epn~eDpLN~ 149 (184)
T KOG0420|consen 129 SIIYGLQFLFLEPNPEDPLNK 149 (184)
T ss_pred HHHHHHHHHhccCCCcccccH
Confidence 999999999999999999973
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.9e-36 Score=240.67 Aligned_cols=117 Identities=32% Similarity=0.742 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126 30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106 (182)
Q Consensus 30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~ 106 (182)
+.+||++|++++ +.++|+.+. +. ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~-~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~------- 72 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAG-PS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK------- 72 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEE-EC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC-------
Confidence 468999999999 557788776 44 68999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
++||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||++.
T Consensus 73 ------------------------i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~ 121 (147)
T PLN00172 73 ------------------------IYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVP 121 (147)
T ss_pred ------------------------cccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999874
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-35 Score=230.79 Aligned_cols=127 Identities=28% Similarity=0.541 Sum_probs=118.5
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126 21 GTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (182)
Q Consensus 21 ~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~ 97 (182)
..++.......|||++|+..| ...+||+. +|+ +||++.|..+| ||.+|+|+|-.|++.+.||.+||+.||.|+|.
T Consensus 21 ~m~v~~~~~V~KRLq~ELm~Lmms~~~gISA-FP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFl 98 (175)
T KOG0421|consen 21 PMAVVDGHSVTKRLQSELMGLMMSNTPGISA-FPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFL 98 (175)
T ss_pred CcccccCchHHHHHHHHHHHHHhcCCCCccc-CcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEee
Confidence 355566778899999999999 55678887 687 67999999999 99999999999999999999999999999999
Q ss_pred eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126 98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIF 177 (182)
Q Consensus 98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~ 177 (182)
|+ +||||||..|.||||+|+++|+..++|++||.+||+||-+||..||+
T Consensus 99 tp-------------------------------c~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPL 147 (175)
T KOG0421|consen 99 TP-------------------------------CFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPL 147 (175)
T ss_pred cc-------------------------------ccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcc
Confidence 99 99999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 030126 178 FAF 180 (182)
Q Consensus 178 ~~~ 180 (182)
+|-
T Consensus 148 Naq 150 (175)
T KOG0421|consen 148 NAQ 150 (175)
T ss_pred hhH
Confidence 984
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=226.12 Aligned_cols=118 Identities=29% Similarity=0.593 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126 30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN 106 (182)
Q Consensus 30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~ 106 (182)
+..-|+++|++| +..+|+.+..-+ +.|+++|.|.| ||++|+|+||.|+..+.||.+||.+||+++|.|+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd-~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~------- 77 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVD-DSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK------- 77 (171)
T ss_pred hHHHHHHHHHHHhcCCCCcccccccc-CCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh-------
Confidence 667788999998 556788887544 67999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCCCC
Q 030126 107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVMLD 173 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P~~ 173 (182)
|||||||.+|.+|+++|- |.|+|++|+++||+||.+||++||.
T Consensus 78 ------------------------mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~ 133 (171)
T KOG0425|consen 78 ------------------------MWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPND 133 (171)
T ss_pred ------------------------hcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCC
Confidence 999999999999999993 5799999999999999999999999
Q ss_pred CCcccc
Q 030126 174 HSIFFA 179 (182)
Q Consensus 174 ~sp~~~ 179 (182)
+||++-
T Consensus 134 ~SPANV 139 (171)
T KOG0425|consen 134 ESPANV 139 (171)
T ss_pred CCccch
Confidence 999973
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=218.84 Aligned_cols=121 Identities=27% Similarity=0.553 Sum_probs=113.7
Q ss_pred ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
...|.|||.+||+++ +.|+||... |.++||++.|.+.| ||++|+|+||+|..++.||.+||..||+++|...
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAg-P~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~---- 76 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAG-PINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE---- 76 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeC-CCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc----
Confidence 347899999999999 778998886 78899999999999 9999999999999999999999999999999988
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcC
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~ 170 (182)
++|||||.+|+||+++|. |.|+|+++|+.||.++.+||++
T Consensus 77 ---------------------------~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE 129 (165)
T KOG0426|consen 77 ---------------------------MFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE 129 (165)
T ss_pred ---------------------------cccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC
Confidence 999999999999999993 6799999999999999999999
Q ss_pred CCCCCcccc
Q 030126 171 MLDHSIFFA 179 (182)
Q Consensus 171 P~~~sp~~~ 179 (182)
||++|+.+-
T Consensus 130 PNdESgANv 138 (165)
T KOG0426|consen 130 PNDESGANV 138 (165)
T ss_pred CCcccCccc
Confidence 999998863
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=8.3e-33 Score=215.51 Aligned_cols=115 Identities=33% Similarity=0.684 Sum_probs=103.2
Q ss_pred HHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHH
Q 030126 33 RLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIH 109 (182)
Q Consensus 33 RL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~ 109 (182)
||++|++++ +.+.|+.+.... ++|+..|++.| ||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~---------- 69 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSE-DDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP---------- 69 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEES-TTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS----------
T ss_pred CHHHHHHHHhhCCCCCEEEEECC-CCChheEEEEEeccCccceecccccccccccccccccccccccccc----------
Confidence 899999999 789999997544 35999999999 9999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC-CccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 110 MLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE-DWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e-~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
++||||+.+|.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|++.
T Consensus 70 ---------------------i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ 119 (140)
T PF00179_consen 70 ---------------------IFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNE 119 (140)
T ss_dssp ----------------------SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSH
T ss_pred ---------------------cccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchH
Confidence 9999999999999999985 599999999999999999999999999875
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.7e-32 Score=216.23 Aligned_cols=123 Identities=27% Similarity=0.483 Sum_probs=113.1
Q ss_pred ccHHHHHHHHHHHhc--CCCCCceEE---ccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126 27 QCAGELRLHKDITEL--NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (182)
Q Consensus 27 ~~~a~kRL~kE~~~l--~~~~g~~~~---~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~ 100 (182)
++.+..||+.|.+.+ .+|-|+.+. .+++..|++.|++.| |+.+|+||||.|.+.+.||++||..||+++|.++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p- 80 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP- 80 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC-
Confidence 345689999999999 778898876 234456899999999 9999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC--ccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126 101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTVMLDHSIFF 178 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~--W~p~~ti~siL~sI~~lL~~P~~~sp~~ 178 (182)
.||||||.+|.|||++|.++ |+|+.||.+||.+||.||.+||..||+.
T Consensus 81 ------------------------------l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq 130 (158)
T KOG0424|consen 81 ------------------------------LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQ 130 (158)
T ss_pred ------------------------------CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchh
Confidence 89999999999999999865 9999999999999999999999999998
Q ss_pred cc
Q 030126 179 AF 180 (182)
Q Consensus 179 ~~ 180 (182)
+-
T Consensus 131 ~e 132 (158)
T KOG0424|consen 131 TE 132 (158)
T ss_pred hH
Confidence 64
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=1.9e-31 Score=208.31 Aligned_cols=115 Identities=31% Similarity=0.676 Sum_probs=107.0
Q ss_pred HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHH
Q 030126 32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFI 108 (182)
Q Consensus 32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~ 108 (182)
+||++|++++ +.+.|+.+. +. ++|+.+|++.| ||++|||+||.|++.|.||++||++||+|+|.++
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~-~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--------- 70 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAE-PV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--------- 70 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEE-EC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC---------
Confidence 7999999999 446788776 44 57999999999 9999999999999999999999999999999988
Q ss_pred HHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC-ccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 109 HMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED-WKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~-W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
++||||+.+|.||+++|... |+|++++++||.+|+++|.+|+.++|++.
T Consensus 71 ----------------------i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ 120 (141)
T cd00195 71 ----------------------IYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNA 120 (141)
T ss_pred ----------------------cccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhH
Confidence 99999999999999999877 99999999999999999999999999864
No 13
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.7e-32 Score=221.42 Aligned_cols=116 Identities=25% Similarity=0.525 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 30 GELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 30 a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
+.+||.+|++++.. ..|+.+.. . ++|+.+.+..| ||++||||||+|.++|++|++||++||+|+|.|+
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~-v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk---- 77 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEM-V-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK---- 77 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEE-c-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee----
Confidence 68999999999933 34666653 2 58999999999 9999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF 178 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~ 178 (182)
||||||++ +|.||||+|.+.|++++|+.++|.+||++|+.|++.+|-=
T Consensus 78 ---------------------------IwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqD 126 (200)
T KOG0418|consen 78 ---------------------------IWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQD 126 (200)
T ss_pred ---------------------------eecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHH
Confidence 99999998 9999999999999999999999999999999999999853
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=1.5e-30 Score=204.20 Aligned_cols=116 Identities=35% Similarity=0.696 Sum_probs=107.2
Q ss_pred HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHH
Q 030126 32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFI 108 (182)
Q Consensus 32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~ 108 (182)
+||++|++++ ..+.|+.+. +..++|+..|++.| ||++|+|+||.|++.|.||++||++||+|+|.++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~-~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--------- 70 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAY-PVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--------- 70 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEE-ECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC---------
Confidence 5999999998 556787764 44345999999999 9999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 109 HMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
++||||+.+|.||+++|. ++|+|++++++||.+|+++|.+|+.++|++.
T Consensus 71 ----------------------i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ 120 (145)
T smart00212 71 ----------------------IYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNA 120 (145)
T ss_pred ----------------------ceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence 999999999999999998 8999999999999999999999999999873
No 15
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-28 Score=192.68 Aligned_cols=120 Identities=23% Similarity=0.524 Sum_probs=110.2
Q ss_pred cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126 26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI 102 (182)
Q Consensus 26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~ 102 (182)
....+.+||+||+.++ +.|+|+...+ .||+.+|.+.+ |.++|.|+|.+|.++++||+.||++.|+|.|..+.
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~v---~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~-- 86 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHRV---TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPA-- 86 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeec---ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCC--
Confidence 3567889999999999 7788988873 68999999999 99999999999999999999999999999999883
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcC------CCCCCc
Q 030126 103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTV------MLDHSI 176 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~------P~~~sp 176 (182)
..|||||+||.||||+|.++|+|++++.+|+.+|.+||+. |.+++-
T Consensus 87 ----------------------------P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~~ 138 (161)
T KOG0427|consen 87 ----------------------------PLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDNDR 138 (161)
T ss_pred ----------------------------CCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccch
Confidence 8899999999999999999999999999999999999987 666666
Q ss_pred cc
Q 030126 177 FF 178 (182)
Q Consensus 177 ~~ 178 (182)
+|
T Consensus 139 Yv 140 (161)
T KOG0427|consen 139 YV 140 (161)
T ss_pred hh
Confidence 65
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.9e-28 Score=189.96 Aligned_cols=120 Identities=29% Similarity=0.564 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHhcCC--CCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126 28 CAGELRLHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL 105 (182)
Q Consensus 28 ~~a~kRL~kE~~~l~~--~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~ 105 (182)
+.+.+||.||+.++.. ...+.- +..+++|+..|++.|-|++.||..|.|++.|.||.+||++||+|.|.|+
T Consensus 1 m~a~~Rl~kEL~dl~~~~~~~~rn-~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk------ 73 (153)
T KOG0422|consen 1 MAAPRRLRKELADLQKNKMKFFRN-IEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK------ 73 (153)
T ss_pred CchhHHHHHHHHHHHhccHHHHhh-hhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeee------
Confidence 3578999999999932 222221 3455789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-CCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
|||||||+.|.+|+.++ .|+|.|+.+.++||+++..++.+|+++.|+.+
T Consensus 74 -------------------------iYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~ 123 (153)
T KOG0422|consen 74 -------------------------IYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRI 123 (153)
T ss_pred -------------------------eccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchh
Confidence 99999999999999999 58899999999999999999999999999865
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.6e-25 Score=180.74 Aligned_cols=118 Identities=26% Similarity=0.551 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126 29 AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF 107 (182)
Q Consensus 29 ~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~ 107 (182)
.+.+|+..|...|... +..+.+ ..+++.+++|.+ ||.++||+||+|++.+++|++||++.|.|.|.++
T Consensus 3 ~~~rRid~Dv~KL~~s-~yeV~~--ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK-------- 71 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMS-DYEVTI--INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK-------- 71 (189)
T ss_pred CcccchhhHHHHHHhc-CCeEEE--ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--------
Confidence 3458999998887322 223332 247799999999 9999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHH-HHHHhhcCCCCCCccccc
Q 030126 108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIY-GLYHLFTVMLDHSIFFAF 180 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~-sI~~lL~~P~~~sp~~~~ 180 (182)
||||||+. +|.||||+++..|+|.+++-.|+. -|-.||..||+.+||+..
T Consensus 72 -----------------------IfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~e 123 (189)
T KOG0416|consen 72 -----------------------IFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGE 123 (189)
T ss_pred -----------------------ccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccH
Confidence 99999998 999999999999999999999986 567899999999999853
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=180.65 Aligned_cols=112 Identities=24% Similarity=0.446 Sum_probs=99.1
Q ss_pred cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126 26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI 102 (182)
Q Consensus 26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~ 102 (182)
.+.++.|||+|||+.+ +..++|... |. ++|+.+||..+ ||++|||+||.|+.++.||++||++||.|+.+|+-++
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~-P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVAR-PN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccC-CC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 3568899999999999 556666665 55 89999999999 9999999999999999999999999999999999766
Q ss_pred hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC---CCccccCcHHHHHHHHHHhhcCCC
Q 030126 103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTVML 172 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~---e~W~p~~ti~siL~sI~~lL~~P~ 172 (182)
|+||- ++||++-. +.|+|.|+|++||.++.++|.+-.
T Consensus 80 Fktnt---------------------------------RLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 80 FKTNT---------------------------------RLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred eecCc---------------------------------eEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 66665 89998874 889999999999999999998743
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.1e-25 Score=178.78 Aligned_cols=120 Identities=28% Similarity=0.533 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
..-..+.|.+|++++ ..|.||.+. ++ +.|+...++.| ||.+|||++|.|+.++.+..+||+.||+-.|.|+
T Consensus 8 pp~vik~~~kEl~~l~~~PPdGIKV~-~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK---- 81 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDESPPDGIKVV-VN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK---- 81 (223)
T ss_pred ChHHHHHHHHHHHhcccCCCCceEEe-cC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee----
Confidence 344678899999999 678899885 44 68999999999 9999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA 179 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~ 179 (182)
||||||..+|.||.+.|..+|+|.+.|..||..|.+||..|+|+|.++.
T Consensus 82 ---------------------------IFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNE 130 (223)
T KOG0423|consen 82 ---------------------------IFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNE 130 (223)
T ss_pred ---------------------------eccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhH
Confidence 9999999999999999999999999999999999999999999998874
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=154.78 Aligned_cols=112 Identities=22% Similarity=0.449 Sum_probs=98.3
Q ss_pred ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
+....+.|||.||..++..|...+...|. +||+++|++.| ||.+|-|+||+|+.+|.||.+||++||.+-..|+-
T Consensus 7 N~KnpaVkRlmkEa~El~~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--- 82 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELKDPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--- 82 (314)
T ss_pred cccCHHHHHHHHHHHHhcCchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC---
Confidence 34568899999999999888777777787 89999999999 99999999999999999999999999999999993
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC---CCccccCcHHHHHHHHHHhhcC
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR---EDWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~---e~W~p~~ti~siL~sI~~lL~~ 170 (182)
||+ .-+-+|||++-+ |.|-|+|+|.+.|++|..+|-.
T Consensus 83 -----------------------GRF-------E~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 83 -----------------------GRF-------EVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred -----------------------Cce-------eeCceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 332 224589999985 7899999999999999998853
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.6e-16 Score=152.16 Aligned_cols=111 Identities=25% Similarity=0.443 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126 29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL 105 (182)
Q Consensus 29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~ 105 (182)
...+..+.|++-+ +.|.|+.+.. .++.+....+.| |+.+|||++|.|.|+|.||++||..||.|...+..
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~--~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~----- 923 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRA--YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGG----- 923 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEe--chHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCc-----
Confidence 4445555566655 7799998873 367777778888 99999999999999999999999999999999873
Q ss_pred hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCccccCcHHHHHHHHHHhhcC
Q 030126 106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~~ti~siL~sI~~lL~~ 170 (182)
-.++||.|.+|+|||++|+ |.|+|..++.+||++||.|.-+
T Consensus 924 ------------------------~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 924 ------------------------VRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ------------------------eeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 2789999999999999995 6799999999999999999865
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-13 Score=136.43 Aligned_cols=120 Identities=26% Similarity=0.458 Sum_probs=104.7
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126 22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT 98 (182)
Q Consensus 22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t 98 (182)
+...-+....+|+++|++.+ ..|+|+.+. +. +.......+.| ||.+|||++|+|.|.|.||..||..||.|++.+
T Consensus 275 ~~k~hs~~~skrv~ke~~llskdlpEgifvr-p~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt 352 (1101)
T KOG0895|consen 275 SSKPHSKNWSKKVAKELKLLSKDLPEGIFVR-PD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLT 352 (1101)
T ss_pred CCCccchhhHHHHHHHhhhhcccCCCCcccc-cc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEee
Confidence 44445666789999999999 678897776 54 67888899999 999999999999999999999999999999998
Q ss_pred ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCcccc-CcHHHHHHHHHHhhcC
Q 030126 99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPV-LNINTIIYGLYHLFTV 170 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~-~ti~siL~sI~~lL~~ 170 (182)
.. ...+.||.|.+|+||+++|. +.|+|. .++.++|.+||.++.+
T Consensus 353 ~~----------------------------~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 353 GG----------------------------GVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cc----------------------------ceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 81 22789999999999999994 789998 9999999999999876
Q ss_pred C
Q 030126 171 M 171 (182)
Q Consensus 171 P 171 (182)
=
T Consensus 405 e 405 (1101)
T KOG0895|consen 405 E 405 (1101)
T ss_pred c
Confidence 3
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=7.8e-12 Score=105.95 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=97.3
Q ss_pred HHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCC--CCeeEEeeccchhhhhH
Q 030126 32 LRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHD--APKVKCKTKVDIFFLNF 107 (182)
Q Consensus 32 kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~--pP~v~f~t~~~~~~~~~ 107 (182)
--|+.|+..+ .+.+||++. |. ..|-..|-.+|.-..+.|.||+|+|.|.+|++||.. -|+|.|.+.
T Consensus 22 y~llAEf~lV~~ekL~gIyvi-PS-yan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~-------- 91 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVI-PS-YANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQS-------- 91 (258)
T ss_pred HHHHHHHHHHHhccCCceEEc-cc-ccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecc--------
Confidence 4566666665 677899995 66 678889999997778899999999999999999955 899999999
Q ss_pred HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCCCCc
Q 030126 108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLDHSI 176 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~~sp 176 (182)
++||+|.+ ++.+|+.-.-..|+- ...|..||+.+|..+.+|+.+.+
T Consensus 92 -----------------------vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~ 139 (258)
T KOG0429|consen 92 -----------------------VFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSID 139 (258)
T ss_pred -----------------------ccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchh
Confidence 89999998 999999877666977 47999999999999999998766
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.7e-10 Score=87.70 Aligned_cols=109 Identities=21% Similarity=0.366 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCC---CCCceEEccCCCCC--cceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126 30 GELRLHKDITELNL---PEACKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF 103 (182)
Q Consensus 30 a~kRL~kE~~~l~~---~~g~~~~~~~~~~n--~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~ 103 (182)
..-||.+|+.+-.+ +..++....+ .+| +..|...| ||+.|+||+-+|.++|...++||..||.|+|.++
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d-~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk---- 80 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLED-DDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK---- 80 (138)
T ss_pred cchhhhhhhccccccccCceeeccccC-CCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE----
Confidence 34678888886633 2223443333 333 46899999 9999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccC--CCCccccCcHHHHHHHHHHhhcC
Q 030126 104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVL--REDWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L--~e~W~p~~ti~siL~sI~~lL~~ 170 (182)
+--.-|.. +|.|.-..+ .++|.-.++++.+|..++-++..
T Consensus 81 ---------------------------inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 81 ---------------------------INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred ---------------------------eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 55556655 666665333 37899999999999999966543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.8e-07 Score=70.56 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccC
Q 030126 77 FVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVL 155 (182)
Q Consensus 77 f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ 155 (182)
..+.+.|++|||+.||.++...+. +-.-.+-.+|.||+.+|. ++|+.++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~------------------------------~~~Gyvl~ggAIcmellt~qgwssay 62 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPL------------------------------EDEGYVLEGGAICMELLTKQGWSSAY 62 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeec------------------------------ccCCEEecchhhHHHHHccccccchh
Confidence 456788999999999999977772 333444568999999995 7899999
Q ss_pred cHHHHHHHHHHhhcC
Q 030126 156 NINTIIYGLYHLFTV 170 (182)
Q Consensus 156 ti~siL~sI~~lL~~ 170 (182)
+|+.++++|..++..
T Consensus 63 ~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 63 EVERVIMQIAATLVK 77 (122)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999998865
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.28 E-value=1.8e-06 Score=67.41 Aligned_cols=70 Identities=20% Similarity=0.439 Sum_probs=61.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceec---ccCCC
Q 030126 73 QNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCL---NVLRE 149 (182)
Q Consensus 73 egg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl---~~L~e 149 (182)
.|+.+.+.+.+|+.||..||.|....+. ++ ..=|||+.+|.+|+ ...-+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~---------------------------~~-~~~pHv~~~G~LCl~~~~~~~D 85 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPK---------------------------QF-PLLPHVESDGKLCLLDEELVLD 85 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCcc---------------------------cc-CccCeEcCCCeEEEecCCcccC
Confidence 6999999999999999999999988662 11 26899999999999 77778
Q ss_pred CccccCcHHHHHHHHHHhhcC
Q 030126 150 DWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 150 ~W~p~~ti~siL~sI~~lL~~ 170 (182)
.|.|.-++..+|.+.+.+|.+
T Consensus 86 ~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 86 PWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999885
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.83 E-value=2.9e-05 Score=60.17 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=52.4
Q ss_pred cCCCCccCCcEEE--EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCcee
Q 030126 66 KPDEGYYQNGTFV--FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVC 143 (182)
Q Consensus 66 gp~~tpYegg~f~--~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iC 143 (182)
|--.=.|+|.+|. +.|-+|.+||..||.+.+.... +-.. ..+.+|+.+|+|.
T Consensus 37 Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~-------------------------~m~I-~~~~~Vd~~G~v~ 90 (121)
T PF05743_consen 37 GTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTP-------------------------SMVI-KPSHHVDSNGRVY 90 (121)
T ss_dssp EEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCC-------------------------TECC-GGCCCB-TTSBB-
T ss_pred cCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCC-------------------------CCCc-CCCCeECCCCCEe
Confidence 4333458888885 5677999999999999886552 0122 3344999999999
Q ss_pred cccCCCCccc-cCcHHHHHHHHHHhhcC
Q 030126 144 LNVLREDWKP-VLNINTIIYGLYHLFTV 170 (182)
Q Consensus 144 l~~L~e~W~p-~~ti~siL~sI~~lL~~ 170 (182)
+..|. +|++ ..++.+++..++..|..
T Consensus 91 ~pyL~-~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 91 LPYLQ-NWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp SHHHH-T--TTTS-HHHHHHHHHHCCCH
T ss_pred Cchhc-cCCCCCCCHHHHHHHHHHHHhH
Confidence 98885 5877 78999999988888764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.018 Score=52.18 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=78.8
Q ss_pred cccHHHHHHHHHHHhc-CCCCC-ceEEccCCCCCcceeEEee-cCCCCccCCcEEEEE--EEcCCCCCCCCCeeEEeecc
Q 030126 26 KQCAGELRLHKDITEL-NLPEA-CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFS--FEVPPIYPHDAPKVKCKTKV 100 (182)
Q Consensus 26 ~~~~a~kRL~kE~~~l-~~~~g-~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~--i~fp~~YP~~pP~v~f~t~~ 100 (182)
....+.+.+...+.+. .+.++ -...+.+ .-..-...+ |---.+|+|.+|.+= |=+.+.||..||.+.+....
T Consensus 17 ~~~~~~~~~l~lls~~~sL~P~t~tf~~~D---g~s~~ll~~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~ 93 (365)
T KOG2391|consen 17 YKDLTRQDLLNLLSSFKSLRPKTDTFTHND---GRSRLLLQLDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTS 93 (365)
T ss_pred chhhHHHHHHHHHHhccccCcccceEEecC---CCccchhhccCcccccccCCcccceEEEEecccCCCCCCeEEecCCc
Confidence 3445555666666655 22222 2232333 222222344 666778999998855 45899999999998776551
Q ss_pred chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCC
Q 030126 101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLD 173 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~ 173 (182)
.+-+ -.|-||+.+|.|.|..|. +|.| +.++..++..+.+.|.++++
T Consensus 94 --------------~M~i------------k~~~hVd~nG~V~LPYLh-~W~~pssdLv~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 94 --------------TMII------------KVHEHVDPNGKVYLPYLH-NWDPPSSDLVGLIQELIAAFSEDPP 140 (365)
T ss_pred --------------hhhh------------HHhhccCCCCeEechhhc-cCCCccchHHHHHHHHHHHhcCCCc
Confidence 1111 239999999999999997 5866 68999999999999988554
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.44 E-value=0.0022 Score=51.71 Aligned_cols=101 Identities=16% Similarity=0.262 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeE-EeecCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126 25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFE-VSIKPDEGYYQNG----------TFVFSFEVPPIYPHDAPK 93 (182)
Q Consensus 25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~-v~igp~~tpYegg----------~f~~~i~fp~~YP~~pP~ 93 (182)
........||..||..| ...+..... +-..|- +.--+.+|-|.|- -|.+++++|..||..||.
T Consensus 20 rd~~~W~~RLKEEy~aL--I~Yv~~nK~----~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 20 RDGDLWVQRLKEEYQAL--IKYVENNKE----NDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp TSCHHHHHHHHHHHHHH--HHHHHHHHH----TT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHhccc----ccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence 34467889999999987 001111111 111221 1114445555543 356778899999999999
Q ss_pred eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCc---cccCcHHHHH
Q 030126 94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDW---KPVLNINTII 161 (182)
Q Consensus 94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W---~p~~ti~siL 161 (182)
+..-.-. | -..-.|..|+|||+... .-| .|.+.|...+
T Consensus 94 i~lPeLd--------------------------G----KTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 94 IALPELD--------------------------G----KTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -B-GGGT--------------------------T----T-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred eeccccC--------------------------C----chhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 8653321 1 12233459999998763 224 4556665543
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.59 E-value=0.1 Score=37.86 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCCceEEccCCCCCcceeEEeec---CCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126 32 LRLHKDITELNLPEACKISFPNGQDDLMNFEVSIK---PDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (182)
Q Consensus 32 kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~ig---p~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~ 100 (182)
.+...|+..|..--+-.. ......+...+.+.+. ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456677776622111111 1111234445555552 2344445668999999999999999999998884
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.98 E-value=0.077 Score=43.22 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=50.8
Q ss_pred EEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCC-----CceecccCC-CCcc
Q 030126 79 FSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-----GNVCLNVLR-EDWK 152 (182)
Q Consensus 79 ~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~-----G~iCl~~L~-e~W~ 152 (182)
+.|.|+.+||..+|.|.+.-+ .|...+||+... ..+|+..-. ..|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~----------------------------dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~ 108 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRK----------------------------DFPGNLPHQNPGPEGEPVSLCLYEGPWSEWR 108 (162)
T ss_pred EEEEecCCCCCCCccchhhHh----------------------------hCCCCCCccCCCCCCCCccceEecCCHHHhh
Confidence 568999999999998877766 222335888765 789996653 5699
Q ss_pred ccCcHHHHHHHHHHhhcC
Q 030126 153 PVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 153 p~~ti~siL~sI~~lL~~ 170 (182)
+.++++.+|..|...|.+
T Consensus 109 ~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 109 PSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred hccCHHHHHHHHHHHHHH
Confidence 999999999999998875
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.81 E-value=0.45 Score=34.22 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=28.7
Q ss_pred eeEEeecCCC--CccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126 60 NFEVSIKPDE--GYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (182)
Q Consensus 60 ~w~v~igp~~--tpYegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (182)
.+.+.+.+.. +.-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 4555553332 233345688999999999999999998766
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.19 Score=40.26 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=41.3
Q ss_pred ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126 25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK 93 (182)
Q Consensus 25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~ 93 (182)
...-....||..||+.+ |... .+..++-..|--.- -+.+|-|-|. .|-+++.+|-.||..+|.
T Consensus 23 rd~~~wvqrlkeey~sl-----i~yv-qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSL-----IAYV-QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred ccchHHHHHHHHHHHHH-----HHHH-HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 44556778999999987 1111 11112223332222 5566666664 356777889999999999
Q ss_pred eEEe
Q 030126 94 VKCK 97 (182)
Q Consensus 94 v~f~ 97 (182)
+..-
T Consensus 97 ialp 100 (167)
T KOG3357|consen 97 IALP 100 (167)
T ss_pred cccc
Confidence 8654
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=91.22 E-value=1.7 Score=34.11 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCcceeEEee--cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCcccccc
Q 030126 56 DDLMNFEVSI--KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYH 133 (182)
Q Consensus 56 ~n~~~w~v~i--gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 133 (182)
+.-..|-+.= ..+.+.|....-.+-|.+|+.||..+|.+-+..+. |+. +.|+. .
T Consensus 21 eg~~~~lii~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~-------------------L~~-~~G~~----i 76 (122)
T PF14462_consen 21 EGGRRWLIIKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP-------------------LKL-ADGGP----I 76 (122)
T ss_pred eCCccEEEEeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc-------------------eEc-cCCCc----C
Confidence 4445676644 45677799999999999999999999887776662 111 11111 1
Q ss_pred Cccc-----CCCceec--ccCCCCcccc-CcHHHHHHHHHHhhc
Q 030126 134 PNID-----LEGNVCL--NVLREDWKPV-LNINTIIYGLYHLFT 169 (182)
Q Consensus 134 PnI~-----~~G~iCl--~~L~e~W~p~-~ti~siL~sI~~lL~ 169 (182)
||=. ..|+.=- +--...|+|. -+|.+.|.-|...|.
T Consensus 77 P~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 77 PNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1100 1343211 1114569995 689999999988875
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.87 E-value=6.8 Score=39.55 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHhc-CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcE-EEEEEEcCCCCCCC-CCeeEEeecc
Q 030126 31 ELRLHKDITEL-NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGT-FVFSFEVPPIYPHD-APKVKCKTKV 100 (182)
Q Consensus 31 ~kRL~kE~~~l-~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~-f~~~i~fp~~YP~~-pP~v~f~t~~ 100 (182)
..-|.+|+.-| .+-+.+..+.-+ -.-+.-.+++ +|-. +-.|-. .++.|.||.+||.. +|.++|..+.
T Consensus 422 pQnLgeE~S~Ig~k~~nV~fEkid--va~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s 492 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIRNVNFEKID--VADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENPS 492 (1081)
T ss_pred hhhHHhHHhHhhccccccceEeec--cccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecCc
Confidence 35567777766 334444443111 1224556666 5442 224444 47889999999998 8999999884
No 36
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=74.10 E-value=4.4 Score=35.91 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeE
Q 030126 28 CAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVK 95 (182)
Q Consensus 28 ~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~ 95 (182)
...-.+|.+|+.++.....+.+.. .+++...++.+... .....+.+.+|.+||.++|.+.
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~i~~---d~~ls~i~l~~~D~-----~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQIQF---DDDLSTIKLKIFDS-----SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEEEEE----CCCSEEEEEEETT-----CEEEEEEEETTTTTTTSEEEEC
T ss_pred cHHHHHHHHHHHHhccccceEEec---CCCccEEEEEEEcC-----CceEEEEEEECCCCCCCCceee
Confidence 455678999999997777777752 36888887777332 2466789999999999999643
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=62.51 E-value=13 Score=31.92 Aligned_cols=42 Identities=26% Similarity=0.492 Sum_probs=29.2
Q ss_pred CcceeEEeecCC---CCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126 57 DLMNFEVSIKPD---EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK 99 (182)
Q Consensus 57 n~~~w~v~igp~---~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (182)
+...+++.|... +.-|.| .+.+.+.++++||..+|-+.+...
T Consensus 29 ~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~~~ 73 (215)
T KOG4018|consen 29 DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAFEN 73 (215)
T ss_pred CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecccc
Confidence 444477777222 223333 788999999999999999965554
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=40.64 E-value=40 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.8
Q ss_pred CcEEEEEEEcCCCCC-CCCCeeEEeec
Q 030126 74 NGTFVFSFEVPPIYP-HDAPKVKCKTK 99 (182)
Q Consensus 74 gg~f~~~i~fp~~YP-~~pP~v~f~t~ 99 (182)
.|.|.|.-.+|-.|| .+||.|.|...
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V~ 91 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKVF 91 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEEE
Confidence 489999999999999 99999999865
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.48 E-value=46 Score=27.63 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.2
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126 74 NGTFVFSFEVPPIYPHDAPKVKCKTKV 100 (182)
Q Consensus 74 gg~f~~~i~fp~~YP~~pP~v~f~t~~ 100 (182)
.|.|.|.=.+|--||.++|.|.|+...
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V~~ 112 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKVHP 112 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEEEc
Confidence 488999999999999999999998763
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.00 E-value=75 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.9
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126 74 NGTFVFSFEVPPIYPHDAPKVKCKTK 99 (182)
Q Consensus 74 gg~f~~~i~fp~~YP~~pP~v~f~t~ 99 (182)
+=+|-++|.+|..||.+.|.+++.+.
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee
Confidence 44588999999999999999999875
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.45 E-value=82 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=23.4
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeEEeec
Q 030126 74 NGTFVFSFEVPPIYP-----HDAPKVKCKTK 99 (182)
Q Consensus 74 gg~f~~~i~fp~~YP-----~~pP~v~f~t~ 99 (182)
.|.|.|.-.+|--|| .+||.|.|...
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V~ 102 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSVF 102 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEEE
Confidence 488999999999999 79999999875
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=27.73 E-value=1.6e+02 Score=26.91 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred cceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126 58 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK 97 (182)
Q Consensus 58 ~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~ 97 (182)
...+++.| ||-|...+-+|.|...||..||.+.|.
T Consensus 53 ~DRF~l~I-----Py~~~~l~W~viFd~~~p~~pPDfiF~ 87 (333)
T PF06113_consen 53 CDRFKLLI-----PYCGEYLKWDVIFDAQYPEFPPDFIFG 87 (333)
T ss_pred cceEEEEe-----eccCCEEEEEEEEcCCCCCCCCCEEeC
Confidence 34455555 677888899999999999999999996
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=22.80 E-value=41 Score=27.29 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.2
Q ss_pred cCcccCCCceecccC
Q 030126 133 HPNIDLEGNVCLNVL 147 (182)
Q Consensus 133 HPnI~~~G~iCl~~L 147 (182)
=+||+.+|.||+-..
T Consensus 97 f~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 97 FFNVYSNGSVCWGNN 111 (175)
T ss_pred ccccCCCCcEeeCCC
Confidence 479999999999653
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.34 E-value=1.1e+02 Score=25.45 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.1
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEeec
Q 030126 74 NGTFVFSFEVPPIYPH-----DAPKVKCKTK 99 (182)
Q Consensus 74 gg~f~~~i~fp~~YP~-----~pP~v~f~t~ 99 (182)
.|.|.|.-..|-.||. +||.|.|+..
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V~ 126 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSVF 126 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEEE
Confidence 4789999999999998 9999998865
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=22.22 E-value=96 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.0
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126 75 GTFVFSFEVPPIYPHDAPKVKCKTKVDI 102 (182)
Q Consensus 75 g~f~~~i~fp~~YP~~pP~v~f~t~~~~ 102 (182)
-.+.+.+..++.||.+.|.|+...+.++
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPRGl 72 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPRGL 72 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCCCC
Confidence 4567889999999999999999988644
No 46
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=47 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCceecccCCCCccccCcHHHHHHHHHHhhcC
Q 030126 139 EGNVCLNVLREDWKPVLNINTIIYGLYHLFTV 170 (182)
Q Consensus 139 ~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~ 170 (182)
.+..|++++..-|+|.+|++..+.-++-++.+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999888777665543
Done!