Query         030126
Match_columns 182
No_of_seqs    126 out of 1139
Neff          5.3 
Searched_HMMs 29240
Date          Mon Mar 25 14:17:31 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030126hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2nvu_C NEDD8-conjugating enzym 100.0 7.4E-41 2.5E-45  272.6  13.0  142    1-179     3-144 (180)
  2 3o2u_A NEDD8-conjugating enzym 100.0 5.9E-40   2E-44  269.3  14.6  145    1-179     3-153 (190)
  3 2ayv_A Ubiquitin-conjugating e 100.0 4.5E-38 1.5E-42  253.1  14.4  127   20-179    12-141 (166)
  4 1y8x_A Ubiquitin-conjugating e 100.0 8.3E-38 2.8E-42  249.9  14.9  122   26-179     3-124 (160)
  5 3h8k_A Ubiquitin-conjugating e 100.0 1.1E-37 3.9E-42  248.9  14.8  120   28-179     2-137 (164)
  6 4gpr_A Ubiquitin-conjugating e 100.0 9.9E-38 3.4E-42  246.7  14.3  120   27-179     2-124 (151)
  7 1zdn_A Ubiquitin-conjugating e 100.0 5.9E-38   2E-42  249.9  12.8  125   22-179     6-133 (158)
  8 2e2c_A Ubiquitin conjugating e 100.0   1E-37 3.5E-42  247.8  14.1  122   25-179     5-129 (156)
  9 2ucz_A UBC7, ubiquitin conjuga 100.0 8.3E-38 2.8E-42  250.1  13.6  120   28-179     3-138 (165)
 10 2c2v_B Ubiquitin-conjugating e 100.0 4.5E-38 1.5E-42  249.6  11.6  118   29-179     5-125 (154)
 11 1z2u_A Ubiquitin-conjugating e 100.0 1.3E-37 4.4E-42  245.6  13.5  119   28-179     3-124 (150)
 12 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.2E-37 4.2E-42  251.2  13.4  119   28-179     3-124 (169)
 13 2c4o_A Ubiquitin-conjugating e 100.0 2.5E-37 8.7E-42  248.4  14.6  121   26-179    16-139 (165)
 14 2aak_A UBC1, ubiquitin conjuga 100.0   2E-37 6.7E-42  245.0  13.6  120   27-179     2-124 (152)
 15 2r0j_A Ubiquitin carrier prote 100.0   2E-37 6.8E-42  244.5  13.0  116   31-179     3-121 (149)
 16 1yh2_A HSPC150 protein similar 100.0 3.9E-37 1.3E-41  247.7  14.6  120   27-179     2-128 (169)
 17 1fxt_A Ubiquitin-conjugating e 100.0 1.2E-37 4.2E-42  245.5  11.1  118   30-179     2-123 (149)
 18 3rz3_A Ubiquitin-conjugating e 100.0 5.2E-37 1.8E-41  250.0  14.8  121   27-179     5-141 (183)
 19 2h2y_A Ubiquitin-conjugating e 100.0 6.3E-37 2.1E-41  239.0  14.2  119   22-173    13-135 (136)
 20 2awf_A Ubiquitin-conjugating e 100.0 4.5E-37 1.5E-41  248.4  13.7  123   25-179    13-151 (172)
 21 1i7k_A Ubiquitin-conjugating e 100.0 2.4E-37 8.2E-42  252.0  12.1  121   26-179    27-150 (179)
 22 1jat_A Ubiquitin-conjugating e 100.0 2.3E-37 7.7E-42  245.6  11.3  118   29-179     5-125 (155)
 23 2fo3_A Ubiquitin-conjugating e 100.0 4.3E-37 1.5E-41  236.5  12.5  115   28-175     5-123 (125)
 24 2bep_A Ubiquitin-conjugating e 100.0 7.1E-37 2.4E-41  243.6  13.2  121   26-179     5-132 (159)
 25 3fn1_B NEDD8-conjugating enzym 100.0 1.1E-36 3.8E-41  244.0  13.7  127   21-179     6-141 (167)
 26 3bzh_A Ubiquitin-conjugating e 100.0   1E-36 3.6E-41  251.0  13.4  119   28-179    47-168 (194)
 27 3rcz_B SUMO-conjugating enzyme 100.0 1.4E-36 4.6E-41  243.9  13.6  125   24-179     5-137 (163)
 28 1yrv_A Ubiquitin-conjugating l 100.0 7.4E-37 2.5E-41  246.8  12.0  123   24-179    18-146 (169)
 29 2pwq_A Ubiquitin conjugating e 100.0 1.3E-36 4.5E-41  254.2  12.3  123   24-179    18-144 (216)
 30 3k9o_A Ubiquitin-conjugating e 100.0 2.2E-36 7.6E-41  249.0  13.0  120   27-179     3-129 (201)
 31 1wzv_A Ubiquitin-conjugating e 100.0 3.3E-36 1.1E-40  238.7  12.7  120   28-179     3-125 (155)
 32 2gjd_A Ubiquitin-conjugating e 100.0 2.7E-36 9.3E-41  240.0  12.2  121   28-179     3-131 (157)
 33 2f4z_A Tgtwinscan_2721 - E2 do 100.0 3.2E-36 1.1E-40  248.0  12.7  125   22-179    25-166 (193)
 34 1c4z_D UBCH7, ubiquitin conjug 100.0 3.5E-36 1.2E-40  238.3  12.2  119   29-179     2-123 (154)
 35 1tte_A Ubiquitin-conjugating e 100.0 1.2E-36 4.2E-41  254.2   9.1  119   29-179     2-124 (215)
 36 2grr_A Ubiquitin-conjugating e 100.0   1E-35 3.5E-40  237.6  13.5  123   26-179     4-134 (161)
 37 2a4d_A Ubiquitin-conjugating e 100.0 2.3E-35 7.8E-40  236.8  14.3  122   26-179    22-153 (160)
 38 2y9m_A Ubiquitin-conjugating e 100.0 1.4E-35 4.6E-40  239.5  12.6  123   26-179     3-141 (172)
 39 2a7l_A Hypothetical ubiquitin- 100.0 1.8E-35 6.1E-40  231.4  12.0  107   31-169    24-136 (136)
 40 2q0v_A Ubiquitin-conjugating e 100.0 3.1E-35   1E-39  234.8  13.5  124   24-179    16-147 (156)
 41 3e46_A Ubiquitin-conjugating e 100.0 2.1E-35 7.1E-40  252.2  13.4  123   24-179    52-181 (253)
 42 1jat_B Ubiquitin-conjugating e 100.0 1.5E-35 5.3E-40  231.3   9.8  120   28-179     5-132 (138)
 43 2onu_A Ubiquitin-conjugating e 100.0 5.7E-36   2E-40  237.4   5.0  117   29-179     2-121 (152)
 44 2hlw_A Ubiquitin-conjugating e 100.0   9E-35 3.1E-39  235.1  11.9  121   27-179    33-163 (170)
 45 2z5d_A Ubiquitin-conjugating e 100.0 3.2E-35 1.1E-39  239.7   7.3  117   28-179    24-143 (179)
 46 4ddg_A Ubiquitin-conjugating e 100.0 8.4E-34 2.9E-38  254.5  13.3  119   28-179     2-123 (399)
 47 1yf9_A Ubiquitin carrier prote 100.0 1.3E-34 4.6E-39  234.0   7.2  117   28-179    11-130 (171)
 48 4ds2_A Ubiquitin-conjugating e 100.0 2.2E-33 7.4E-38  225.3   8.9  122   25-179     4-145 (167)
 49 2f4w_A Ubiquitin-conjugating e 100.0 1.7E-32 5.6E-37  224.5  12.4  119   24-177     9-133 (187)
 50 3ceg_A Baculoviral IAP repeat- 100.0 3.4E-32 1.2E-36  239.4  12.7  129   25-179    72-215 (323)
 51 1zuo_A Hypothetical protein LO 100.0 3.8E-32 1.3E-36  222.3   8.3  119   23-174    21-159 (186)
 52 2z6o_A UFM1-conjugating enzyme  99.9 4.8E-23 1.6E-27  166.7   2.4  102   25-162    28-144 (172)
 53 3r3q_A Suppressor protein STP2  99.7 2.5E-17 8.4E-22  132.5   8.1  121   32-175    31-161 (162)
 54 3kpa_A Probable ubiquitin fold  99.6 1.9E-16 6.6E-21  126.4   1.2   94   25-157    30-134 (168)
 55 3obq_A Tumor susceptibility ge  99.3 1.7E-12   6E-17  102.6   7.4   86   55-170    50-138 (146)
 56 2ebm_A RWD domain-containing p  95.9   0.044 1.5E-06   40.5   8.6   68   30-99     11-79  (128)
 57 2yz0_A Serine/threonine-protei  94.9    0.18 6.2E-06   37.7   8.9   70   30-99     11-86  (138)
 58 2day_A Ring finger protein 25;  94.1    0.22 7.4E-06   36.7   7.7   67   33-99     12-83  (128)
 59 1ukx_A GCN2, GCN2 EIF2alpha ki  93.1    0.76 2.6E-05   34.0   9.3   69   29-99     10-87  (137)
 60 3zqs_A E3 ubiquitin-protein li  92.6    0.52 1.8E-05   38.2   8.2   82   33-169     5-87  (186)
 61 1tt5_E Ubiquitin-conjugating e  92.3   0.069 2.3E-06   30.4   1.8   19    1-19      1-19  (26)
 62 2ebk_A RWD domain-containing p  91.9     0.2 6.8E-06   37.0   4.6   42   58-99     39-80  (128)
 63 2dax_A Protein C21ORF6; RWD do  89.1    0.38 1.3E-05   36.7   4.1   24   76-99     74-97  (152)
 64 2daw_A RWD domain containing p  86.5    0.64 2.2E-05   35.7   3.9   24   76-99     76-99  (154)

No 1  
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=7.4e-41  Score=272.59  Aligned_cols=142  Identities=59%  Similarity=1.028  Sum_probs=128.9

Q ss_pred             CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEE
Q 030126            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFS   80 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~   80 (182)
                      ||+++++++|+++++++     +..+.+.+.+||++|+++++.++|+++.+++ ++|++.|++.|||++|||+||.|++.
T Consensus         3 m~~~~~~~~~~~~~~~~-----~~~~~~~~~~RL~kEl~~l~~~~~i~~~~p~-~~nl~~W~~~igP~~tpYegg~f~~~   76 (180)
T 2nvu_C            3 MIKLFSLKQQKKEEEKG-----SSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFS   76 (180)
T ss_dssp             --CCCCCCCSCCCCCCS-----CCCSCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCCSGGGTTBCEEEE
T ss_pred             hHHHHHHHHHHHhhhhc-----ccCCccHHHHHHHHHHHhcCCCCCeEEEecc-cccccceEEEECCCCCCCCCCEEEEE
Confidence            89999998887554432     2566788999999999999989999987666 78999999999999999999999999


Q ss_pred             EEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHH
Q 030126           81 FEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTI  160 (182)
Q Consensus        81 i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~si  160 (182)
                      |.||++||++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+++|++|
T Consensus        77 i~fp~~YP~~PP~v~F~t~-------------------------------i~HPNV~~~G~iCl~iL~~~W~p~~~i~~v  125 (180)
T 2nvu_C           77 FKVGQGYPHDPPKVKCETM-------------------------------VYHPNIDLEGNVALNILREDWKPVLTINSI  125 (180)
T ss_dssp             EECCTTTTTSCCEEEECSC-------------------------------CCBTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred             EeCCCcCCCCCCcCceecc-------------------------------CccCCCCCCCcEEcccccccCCCCCCHHHH
Confidence            9999999999999999999                               999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCcccc
Q 030126          161 IYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       161 L~sI~~lL~~P~~~sp~~~  179 (182)
                      |.+|++||.+|+++||++.
T Consensus       126 L~si~~ll~~Pn~~~p~n~  144 (180)
T 2nvu_C          126 IYGLQYLFLEPNPEDPLNK  144 (180)
T ss_dssp             HHHHHHHHHSCCTTSCSSH
T ss_pred             HHHHHHHHhCCCCCCccCH
Confidence            9999999999999999875


No 2  
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00  E-value=5.9e-40  Score=269.30  Aligned_cols=145  Identities=39%  Similarity=0.796  Sum_probs=133.6

Q ss_pred             CcchhhhhhhhhhhhhhCCCCCCCccccHHHHHHHHHHHhcCCCCCceEEc---cCCCCCcc---eeEEeecCCCCccCC
Q 030126            1 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISF---PNGQDDLM---NFEVSIKPDEGYYQN   74 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~kRL~kE~~~l~~~~g~~~~~---~~~~~n~~---~w~v~igp~~tpYeg   74 (182)
                      |++++++++|+++++++.+  ++..+.+.+.+||++|++++..++|+++.+   ++ ++|++   .|++.|+|++|||+|
T Consensus         3 m~~l~~~~~~~~~~~~~~~--~~~~~~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~-~~nl~~~~~w~~~I~p~~tpyeg   79 (190)
T 3o2u_A            3 MLKLRQLQKKKQKENENSS--SIQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNY   79 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--SSSCCCCHHHHHHHHHHHTCCCCTTEEEEEEECTT-CCCTTSCCEEEEEECCSSSTTTT
T ss_pred             hHHHHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHHhccCCCCEEEEecCCCC-CccCCcCCeEEEEEcCCCCCCCC
Confidence            7888988888887766552  566778899999999999999888999974   66 78999   999999888899999


Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCcccc
Q 030126           75 GTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPV  154 (182)
Q Consensus        75 g~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~  154 (182)
                      |.|++.|.||++||++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+
T Consensus        80 g~f~~~i~fp~~YP~~PP~v~f~t~-------------------------------i~HPnV~~~G~iCl~iL~~~W~p~  128 (190)
T 3o2u_A           80 GSINFNLDFNEVYPIEPPKVVCLKK-------------------------------IFHPNIDLKGNVCLNILREDWSPA  128 (190)
T ss_dssp             CCEEEEEECCTTTTTSCCEEEECSC-------------------------------CCCTTBCTTSBBCCGGGTTTCCTT
T ss_pred             CEEEEEEECCCCCCCCCceeEEecC-------------------------------cccCCCCCCCeEechhccCCCCCC
Confidence            9999999999999999999999999                               999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          155 LNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       155 ~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                      ++|++||.+|+++|.+|+++||+++
T Consensus       129 ~~i~~vL~~i~~ll~~pn~~~pln~  153 (190)
T 3o2u_A          129 LDLQSIITGLLFLFLEPNPNDPLNK  153 (190)
T ss_dssp             CCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             CCHHHHHHHHHHHHhCCCCCcchhH
Confidence            9999999999999999999999985


No 3  
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00  E-value=4.5e-38  Score=253.13  Aligned_cols=127  Identities=29%  Similarity=0.666  Sum_probs=114.1

Q ss_pred             CCCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEE
Q 030126           20 GGTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKC   96 (182)
Q Consensus        20 ~~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f   96 (182)
                      ++........+.+||++|++++  +.++|+.+. ++ ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|
T Consensus        12 ~~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F   89 (166)
T 2ayv_A           12 SGRENLYFQGALKRINKELNDLSKDPPTNCSAG-PV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNF   89 (166)
T ss_dssp             -------CTTHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             cccccccCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeee
Confidence            3445555667899999999999  778899886 44 58999999999 9999999999999999999999999999999


Q ss_pred             eeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCc
Q 030126           97 KTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSI  176 (182)
Q Consensus        97 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp  176 (182)
                      .|+                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||
T Consensus        90 ~T~-------------------------------i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~P  138 (166)
T 2ayv_A           90 TTK-------------------------------IYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDP  138 (166)
T ss_dssp             CSC-------------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSC
T ss_pred             ccC-------------------------------CcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCch
Confidence            999                               9999999999999999999999999999999999999999999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       139 ln~  141 (166)
T 2ayv_A          139 LVP  141 (166)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            975


No 4  
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=8.3e-38  Score=249.88  Aligned_cols=122  Identities=62%  Similarity=1.089  Sum_probs=115.9

Q ss_pred             cccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           26 KQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +.+.+.+||++|++++++++|+++.+++ ++|++.|++.|||++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         3 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   75 (160)
T 1y8x_A            3 MASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM------   75 (160)
T ss_dssp             SCCHHHHHHHHHHHTCCCCTTEEEECSS-TTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC------
T ss_pred             cccHHHHHHHHHHHhcCCCCCeEEEecc-CCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC------
Confidence            3467899999999999989999987666 789999999999999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~  124 (160)
T 1y8x_A           76 -------------------------VYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNK  124 (160)
T ss_dssp             -------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             -------------------------CccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCH
Confidence                                     9999999999999999999999999999999999999999999999975


No 5  
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00  E-value=1.1e-37  Score=248.85  Aligned_cols=120  Identities=27%  Similarity=0.540  Sum_probs=112.8

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      .++.+||++|++++  +.++|+++. +..++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-----   75 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAG-PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE-----   75 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC-----
Confidence            46899999999999  678899986 55456999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                                +|||||+.+|.||+++|.             ++|+|++||++||.+|++||.+|
T Consensus        76 --------------------------i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~p  129 (164)
T 3h8k_A           76 --------------------------MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEP  129 (164)
T ss_dssp             --------------------------CCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSC
T ss_pred             --------------------------CccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCC
Confidence                                      999999999999999997             78999999999999999999999


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||+++
T Consensus       130 n~~~p~n~  137 (164)
T 3h8k_A          130 NDESGANV  137 (164)
T ss_dssp             CCSSCSSH
T ss_pred             CCCCccCH
Confidence            99999975


No 6  
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00  E-value=9.9e-38  Score=246.73  Aligned_cols=120  Identities=32%  Similarity=0.674  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ...+.+||++|++++  +.+.|+++. +. ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~----   75 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAG-PV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK----   75 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC----
Confidence            356889999999999  678899987 54 58999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|+++||++.
T Consensus        76 ---------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  124 (151)
T 4gpr_A           76 ---------------------------VYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP  124 (151)
T ss_dssp             ---------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSH
T ss_pred             ---------------------------cccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhH
Confidence                                       9999999999999999999999999999999999999999999999975


No 7  
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=5.9e-38  Score=249.90  Aligned_cols=125  Identities=27%  Similarity=0.485  Sum_probs=116.0

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      +..+.+..+.+||++|++++  +.++|+.+. ++ ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|
T Consensus         6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   83 (158)
T 1zdn_A            6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVF-PN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT   83 (158)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEecc
Confidence            34456678899999999999  678899986 54 68999999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                      +                               +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||++
T Consensus        84 ~-------------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n  132 (158)
T 1zdn_A           84 K-------------------------------IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALN  132 (158)
T ss_dssp             C-------------------------------CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSS
T ss_pred             C-------------------------------cccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence            9                               999999999999999999999999999999999999999999999997


Q ss_pred             c
Q 030126          179 A  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       133 ~  133 (158)
T 1zdn_A          133 E  133 (158)
T ss_dssp             H
T ss_pred             H
Confidence            5


No 8  
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00  E-value=1e-37  Score=247.82  Aligned_cols=122  Identities=28%  Similarity=0.559  Sum_probs=114.0

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      .+...+.+||++|++++  +.++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+  
T Consensus         5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~-p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--   80 (156)
T 2e2c_A            5 KERHSVSKRLQQELRTLLMSGDPGITAF-PD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP--   80 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--
Confidence            34556889999999999  567899886 55 57999999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                   +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|++++|+++
T Consensus        81 -----------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~  129 (156)
T 2e2c_A           81 -----------------------------CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNA  129 (156)
T ss_dssp             -----------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCH
T ss_pred             -----------------------------cccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHH
Confidence                                         9999999999999999999999999999999999999999999999985


No 9  
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00  E-value=8.3e-38  Score=250.14  Aligned_cols=120  Identities=26%  Similarity=0.525  Sum_probs=112.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.+.+||++|++++  ..++||++. +.+++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~~~-~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~-----   76 (165)
T 2ucz_A            3 KTAQKRLLKELQQLIKDSPPGIVAG-PKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS-----   76 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-ECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC-----
Confidence            47889999999999  678899986 44357999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-------------CCCccccCcHHHHHHHHHHhhcCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-------------REDWKPVLNINTIIYGLYHLFTVM  171 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-------------~e~W~p~~ti~siL~sI~~lL~~P  171 (182)
                                                +|||||+.+|.|||++|             .++|+|+++|++||.+|++||.+|
T Consensus        77 --------------------------i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~P  130 (165)
T 2ucz_A           77 --------------------------ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP  130 (165)
T ss_dssp             --------------------------CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred             --------------------------CccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCC
Confidence                                      99999999999999999             688999999999999999999999


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||+++
T Consensus       131 n~~~p~n~  138 (165)
T 2ucz_A          131 NIESGANI  138 (165)
T ss_dssp             CGGGCCCH
T ss_pred             CCCCchhH
Confidence            99999975


No 10 
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=4.5e-38  Score=249.65  Aligned_cols=118  Identities=31%  Similarity=0.604  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.+||++|++++  +.++|+++. +. ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+      
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   76 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAE-PD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK------   76 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC------
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC------
Confidence            4569999999999  678899986 54 57999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        77 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~  125 (154)
T 2c2v_B           77 -------------------------IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN  125 (154)
T ss_dssp             -------------------------CCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--C
T ss_pred             -------------------------cccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                     9999999999999999999999999999999999999999999999975


No 11 
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00  E-value=1.3e-37  Score=245.62  Aligned_cols=119  Identities=32%  Similarity=0.711  Sum_probs=112.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|++++  +.++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-----   75 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAG-PV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----   75 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-EC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC-----
Confidence            45789999999999  678899886 44 58999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 --------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~  124 (150)
T 1z2u_A           76 --------------------------IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  124 (150)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --------------------------cccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCH
Confidence                                      9999999999999999999999999999999999999999999999875


No 12 
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00  E-value=1.2e-37  Score=251.20  Aligned_cols=119  Identities=28%  Similarity=0.579  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~-----   75 (169)
T 1ayz_A            3 TPARRRLMRDFKRMKEDAPPGVSAS-PL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE-----   75 (169)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-ec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC-----
Confidence            46889999999999  678899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|++++|+++
T Consensus        76 --------------------------i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~  124 (169)
T 1ayz_A           76 --------------------------MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV  124 (169)
T ss_dssp             --------------------------CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSH
T ss_pred             --------------------------CccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHH
Confidence                                      9999999999999999999999999999999999999999999999975


No 13 
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00  E-value=2.5e-37  Score=248.35  Aligned_cols=121  Identities=31%  Similarity=0.725  Sum_probs=113.7

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+.+.+||++|++++  +.++||++. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+   
T Consensus        16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~---   90 (165)
T 2c4o_A           16 RGSMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR---   90 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC---
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC---
Confidence            3456889999999999  667899887 54 58999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        91 ----------------------------i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~  139 (165)
T 2c4o_A           91 ----------------------------IYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  139 (165)
T ss_dssp             ----------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             ----------------------------CcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccH
Confidence                                        9999999999999999999999999999999999999999999999875


No 14 
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00  E-value=2e-37  Score=245.03  Aligned_cols=120  Identities=26%  Similarity=0.583  Sum_probs=113.0

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +..+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         2 s~~a~~RL~~E~~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~----   75 (152)
T 2aak_A            2 STPARKRLMRDFKRLQQDPPAGISGA-PQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR----   75 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC----
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC----
Confidence            346889999999999  678899886 44 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+++||++.
T Consensus        76 ---------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  124 (152)
T 2aak_A           76 ---------------------------MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS  124 (152)
T ss_dssp             ---------------------------CCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSH
T ss_pred             ---------------------------cccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccH
Confidence                                       9999999999999999999999999999999999999999999999975


No 15 
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00  E-value=2e-37  Score=244.53  Aligned_cols=116  Identities=31%  Similarity=0.639  Sum_probs=110.5

Q ss_pred             HHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           31 ELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      .+||++|++++  +.++|+++. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+        
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--------   72 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAV-PV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--------   72 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC--------
Confidence            48999999999  778899987 44 58999999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                             +|||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        73 -----------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  121 (149)
T 2r0j_A           73 -----------------------IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS  121 (149)
T ss_dssp             -----------------------CCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSC
T ss_pred             -----------------------CccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhH
Confidence                                   9999999999999999999999999999999999999999999999985


No 16 
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=3.9e-37  Score=247.74  Aligned_cols=120  Identities=28%  Similarity=0.571  Sum_probs=113.5

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      ++++.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+    
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~-~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~----   75 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCW-QD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP----   75 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC----
Confidence            457889999999999  678899987 44 68999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC----CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR----EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~----e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                 +|||||+.+|.|||++|.    ++|+|+++|++||.+|++||.+|+++||+++
T Consensus        76 ---------------------------i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~  128 (169)
T 1yh2_A           76 ---------------------------IYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMA  128 (169)
T ss_dssp             ---------------------------CCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ---------------------------CccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhH
Confidence                                       999999999999999998    8999999999999999999999999999975


No 17 
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00  E-value=1.2e-37  Score=245.46  Aligned_cols=118  Identities=29%  Similarity=0.553  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           30 GELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        30 a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+||++|++++  +.++|+.+. +.+++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~-~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-------   73 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK-------   73 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEE-ESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC-------
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEE-ECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC-------
Confidence            469999999999  667899987 44345999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        74 ------------------------i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  123 (149)
T 1fxt_A           74 ------------------------VYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA  123 (149)
T ss_dssp             ------------------------CCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSH
T ss_pred             ------------------------CccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                    99999999 99999999999999999999999999999999999999985


No 18 
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00  E-value=5.2e-37  Score=249.98  Aligned_cols=121  Identities=30%  Similarity=0.552  Sum_probs=113.2

Q ss_pred             ccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           27 QCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      .+++.+||++|++++  +.++|+++..++ ++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+    
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~~~~-~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~----   79 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVTLVD-EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK----   79 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEECT-TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC----
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEecC-ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC----
Confidence            357899999999999  678899987554 78999999999 9999999999999999999999999999999999    


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhhcC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLFTV  170 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL~~  170 (182)
                                                 +|||||+.+|.||+++|.             ++|+|+++|++||.+|++||.+
T Consensus        80 ---------------------------i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~  132 (183)
T 3rz3_A           80 ---------------------------MWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE  132 (183)
T ss_dssp             ---------------------------CCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHS
T ss_pred             ---------------------------CccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhC
Confidence                                       999999999999999996             8899999999999999999999


Q ss_pred             CCCCCcccc
Q 030126          171 MLDHSIFFA  179 (182)
Q Consensus       171 P~~~sp~~~  179 (182)
                      |+++||++.
T Consensus       133 Pn~~~p~n~  141 (183)
T 3rz3_A          133 PNTFSPANV  141 (183)
T ss_dssp             CCCSSCSSH
T ss_pred             CCCCCcccH
Confidence            999999974


No 19 
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00  E-value=6.3e-37  Score=239.03  Aligned_cols=119  Identities=22%  Similarity=0.444  Sum_probs=109.4

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      ....+...+.+||++|++++  +.+.|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        13 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~~~~-~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t   90 (136)
T 2h2y_A           13 KTKYNLGNANYRIQKELNNFLKNPPINCTID-VH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ   90 (136)
T ss_dssp             SSCCCTTSHHHHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred             hhhccchHHHHHHHHHHHHHHhCCCCCeEEE-ec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC
Confidence            33445557889999999999  677899886 44 68999999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCcccc-ccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCC
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQV-YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLD  173 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~  173 (182)
                      +                               + |||||+.+|.||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus        91 ~-------------------------------i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           91 K-------------------------------PPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             S-------------------------------CCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             C-------------------------------CCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9                               6 999999999999999999999999999999999999999985


No 20 
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00  E-value=4.5e-37  Score=248.38  Aligned_cols=123  Identities=30%  Similarity=0.542  Sum_probs=107.1

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      ..+..+.+||++|+++|  +.++||++. +..++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+  
T Consensus        13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~-p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~--   89 (172)
T 2awf_A           13 GLVPRGSLLLRRQLAELNKNPVEGFSAG-LIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--   89 (172)
T ss_dssp             CCCCTTHHHHHHHHHHHHHSCCTTEEEE-ESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC--
Confidence            34567889999999999  778899987 44357999999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------------CCccccCcHHHHHHHHHHhh
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------------EDWKPVLNINTIIYGLYHLF  168 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------------e~W~p~~ti~siL~sI~~lL  168 (182)
                                                   +|||||+.+|.||+++|.             ++|+|+++|++||.+|++||
T Consensus        90 -----------------------------i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll  140 (172)
T 2awf_A           90 -----------------------------IWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML  140 (172)
T ss_dssp             -----------------------------CCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHH
T ss_pred             -----------------------------CccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHH
Confidence                                         999999999999999996             68999999999999999999


Q ss_pred             cCCCCCCcccc
Q 030126          169 TVMLDHSIFFA  179 (182)
Q Consensus       169 ~~P~~~sp~~~  179 (182)
                      .+|+++||+++
T Consensus       141 ~~Pn~~~p~n~  151 (172)
T 2awf_A          141 ADPNGDSPANV  151 (172)
T ss_dssp             SCC--------
T ss_pred             HCcCCCCccCH
Confidence            99999999986


No 21 
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=2.4e-37  Score=252.00  Aligned_cols=121  Identities=27%  Similarity=0.486  Sum_probs=112.1

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      +...+.+||++|++++  ..++||.+. ++ ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+   
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~---  101 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAF-PE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP---  101 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEE-EE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC---
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC---
Confidence            5677899999999999  567899886 54 57999999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus       102 ----------------------------i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~  150 (179)
T 1i7k_A          102 ----------------------------CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT  150 (179)
T ss_dssp             ----------------------------CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ----------------------------CccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhH
Confidence                                        9999999999999999999999999999999999999999999999975


No 22 
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00  E-value=2.3e-37  Score=245.60  Aligned_cols=118  Identities=33%  Similarity=0.644  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      .+.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+      
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~-~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   76 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAE-PH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK------   76 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC------
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-EC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc------
Confidence            3569999999999  678899986 44 58999999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.|||++|.++|+|+++|++||.+|++||.+|+++||+++
T Consensus        77 -------------------------i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  125 (155)
T 1jat_A           77 -------------------------IYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLAN  125 (155)
T ss_dssp             -------------------------CCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCC
T ss_pred             -------------------------cccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccH
Confidence                                     9999999999999999999999999999999999999999999999986


No 23 
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00  E-value=4.3e-37  Score=236.51  Aligned_cols=115  Identities=20%  Similarity=0.466  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +++.+||++|++++  +.++|+.+. ++ ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+     
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~-~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~-----   77 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLD-VH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK-----   77 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEE-EC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS-----
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-eC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC-----
Confidence            35779999999999  677899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCcccc-ccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCC
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQV-YHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                                                + +||||+.+|.||+++|.++|+|++||++||.+|++||.+|+.+.
T Consensus        78 --------------------------i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           78 --------------------------PPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             --------------------------CCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             --------------------------CCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence                                      6 99999999999999999999999999999999999999998763


No 24 
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00  E-value=7.1e-37  Score=243.63  Aligned_cols=121  Identities=23%  Similarity=0.526  Sum_probs=112.2

Q ss_pred             cccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ++..+.+||++|++++..     +.|+.+. +. ++|+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEE-eC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            345688999999999943     7788887 44 57999999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCccc
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFF  178 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~  178 (182)
                                                     +|||||+. +|.|||++|.++|+|+++|++||.+|++||.+|+++||++
T Consensus        83 -------------------------------i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n  131 (159)
T 2bep_A           83 -------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQD  131 (159)
T ss_dssp             -------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSC
T ss_pred             -------------------------------CCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCccc
Confidence                                           99999996 9999999999999999999999999999999999999998


Q ss_pred             c
Q 030126          179 A  179 (182)
Q Consensus       179 ~  179 (182)
                      +
T Consensus       132 ~  132 (159)
T 2bep_A          132 A  132 (159)
T ss_dssp             H
T ss_pred             H
Confidence            5


No 25 
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00  E-value=1.1e-36  Score=244.04  Aligned_cols=127  Identities=40%  Similarity=0.804  Sum_probs=116.4

Q ss_pred             CCCCccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           21 GTPVKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        21 ~~~~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      .++...++.+.+||++|++++  +.++||++..++ ++|+..|++.|||++|||+||.|++.|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~-~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   84 (167)
T 3fn1_B            6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT   84 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSS-SSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred             CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence            345667889999999999999  568899997544 68999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC------CccccCcHHHHHHHHHHhhcC-C
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE------DWKPVLNINTIIYGLYHLFTV-M  171 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e------~W~p~~ti~siL~sI~~lL~~-P  171 (182)
                      +                               +|||||+.+|.||+++|..      +|+|+++|++||.+|++||.+ |
T Consensus        85 ~-------------------------------i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~p  133 (167)
T 3fn1_B           85 K-------------------------------IWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLL  133 (167)
T ss_dssp             C-------------------------------CCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTC
T ss_pred             C-------------------------------cccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCC
Confidence            9                               9999999999999999975      799999999999999999999 7


Q ss_pred             CCCCcccc
Q 030126          172 LDHSIFFA  179 (182)
Q Consensus       172 ~~~sp~~~  179 (182)
                      +++||++.
T Consensus       134 n~~~p~n~  141 (167)
T 3fn1_B          134 NFDDPLNI  141 (167)
T ss_dssp             CSSSCSCH
T ss_pred             CCCcchhH
Confidence            99999975


No 26 
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00  E-value=1e-36  Score=250.98  Aligned_cols=119  Identities=27%  Similarity=0.685  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      ..+.+||++|+++|  +.++||.+. +. ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+     
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~-----  119 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAG-PK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR-----  119 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-ES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceee-cc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC-----
Confidence            56889999999999  668899886 44 68999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|++.
T Consensus       120 --------------------------i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~  168 (194)
T 3bzh_A          120 --------------------------IYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVG  168 (194)
T ss_dssp             --------------------------CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             --------------------------CccceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhH
Confidence                                      9999999999999999999999999999999999999999999999984


No 27 
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00  E-value=1.4e-36  Score=243.86  Aligned_cols=125  Identities=26%  Similarity=0.495  Sum_probs=111.9

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCC---CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQD---DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~---n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~   97 (182)
                      +..+.+|.+||++|++++  +.++|+.+....++|   |+++|++.| ||++|||+||.|++.|.||++||++||+|+|.
T Consensus         5 ~~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~   84 (163)
T 3rcz_B            5 HHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT   84 (163)
T ss_dssp             ----CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cCCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEe
Confidence            456778999999999999  778999986322112   899999999 99999999999999999999999999999999


Q ss_pred             eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCC--ccccCcHHHHHHHHHHhhcCCCCCC
Q 030126           98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRED--WKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus        98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~--W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                      |+                               +|||||+.+|.||+++|.+.  |+|++||++||.+|++||.+|++++
T Consensus        85 t~-------------------------------i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~  133 (163)
T 3rcz_B           85 PP-------------------------------LFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS  133 (163)
T ss_dssp             SC-------------------------------CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTS
T ss_pred             CC-------------------------------CccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCC
Confidence            99                               99999999999999999754  9999999999999999999999999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |++.
T Consensus       134 p~n~  137 (163)
T 3rcz_B          134 PAQT  137 (163)
T ss_dssp             CSCH
T ss_pred             ccCH
Confidence            9875


No 28 
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=7.4e-37  Score=246.82  Aligned_cols=123  Identities=24%  Similarity=0.398  Sum_probs=114.5

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ..+...+.+||++|+++|  +.++|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+ 
T Consensus        18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~-   94 (169)
T 1yrv_A           18 GSMHGRAYLLLHRDFCDLKENNYKGITAK-PV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI-   94 (169)
T ss_dssp             TGGGCHHHHHHHHHHHHHHHHCCTTEEEE-EC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC-
T ss_pred             CccChHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC-
Confidence            345567899999999999  668899886 55 68999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcc-cCCCceecccCC--CCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNI-DLEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI-~~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                    +||||| +.+|.|||++|.  ++|+|+++|++||.+|++||.+|+++||+
T Consensus        95 ------------------------------i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pl  144 (169)
T 1yrv_A           95 ------------------------------PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPV  144 (169)
T ss_dssp             ------------------------------CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCS
T ss_pred             ------------------------------CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCch
Confidence                                          999999 789999999998  89999999999999999999999999999


Q ss_pred             cc
Q 030126          178 FA  179 (182)
Q Consensus       178 ~~  179 (182)
                      ++
T Consensus       145 n~  146 (169)
T 1yrv_A          145 NL  146 (169)
T ss_dssp             CH
T ss_pred             hH
Confidence            75


No 29 
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00  E-value=1.3e-36  Score=254.21  Aligned_cols=123  Identities=27%  Similarity=0.524  Sum_probs=114.2

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ..+.+.+.+||++|++++  ..++|+.+. +. ++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+ 
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~-   94 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEIDAH-IK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK-   94 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTEEEE-EC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCC-
Confidence            345668899999999999  667899887 44 57999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        95 ------------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~  144 (216)
T 2pwq_A           95 ------------------------------IWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDA  144 (216)
T ss_dssp             ------------------------------CCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------------CcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence                                          99999995 99999999999999999999999999999999999999985


No 30 
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00  E-value=2.2e-36  Score=249.02  Aligned_cols=120  Identities=23%  Similarity=0.534  Sum_probs=111.3

Q ss_pred             ccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      +..+.+||++|++++..     +.|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+ 
T Consensus         3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-   79 (201)
T 3k9o_A            3 ANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK-   79 (201)
T ss_dssp             -CTTHHHHHHHHHHHHTCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC-
Confidence            34678999999999933     5788886 44 57999999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                    +|||||+. +|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        80 ------------------------------i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~  129 (201)
T 3k9o_A           80 ------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA  129 (201)
T ss_dssp             ------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCH
T ss_pred             ------------------------------cccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccH
Confidence                                          99999996 99999999999999999999999999999999999999986


No 31 
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00  E-value=3.3e-36  Score=238.67  Aligned_cols=120  Identities=25%  Similarity=0.513  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      +.+.+||++|++++  +.++|+.+..++ ++|+++|++.|.|++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~-~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~------   75 (155)
T 1wzv_A            3 HMASMRVVKELEDLQKKPPPYLRNLSSD-DANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK------   75 (155)
T ss_dssp             --CHHHHHHHHHHHHHSCCTTEEEEEEC-SSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC------
T ss_pred             chHHHHHHHHHHHHHhCCCCCEEEEecC-CCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC------
Confidence            45789999999999  677899884455 689999999988999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC-CCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL-REDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L-~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+.+|.||+++| .++|+|+++|++||.+|++||.+|+++||++.
T Consensus        76 -------------------------i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  125 (155)
T 1wzv_A           76 -------------------------IYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRM  125 (155)
T ss_dssp             -------------------------CCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSH
T ss_pred             -------------------------CccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHH
Confidence                                     99999999999999999 89999999999999999999999999999875


No 32 
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00  E-value=2.7e-36  Score=240.05  Aligned_cols=121  Identities=27%  Similarity=0.506  Sum_probs=111.6

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccC---CCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccc
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPN---GQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVD  101 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~---~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~  101 (182)
                      ..+.+||++|++++  +.++|+.+....   +++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+  
T Consensus         3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--   80 (157)
T 2gjd_A            3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG--   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT--
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC--
Confidence            46889999999999  778899886321   225899999999 9999999999999999999999999999999999  


Q ss_pred             hhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC--CccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          102 IFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e--~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                   +|||||+.+|.||+++|.+  +|+|+++|++||.+|++||.+|++++|++.
T Consensus        81 -----------------------------i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  131 (157)
T 2gjd_A           81 -----------------------------FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQE  131 (157)
T ss_dssp             -----------------------------CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCH
T ss_pred             -----------------------------CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCH
Confidence                                         9999999999999999987  799999999999999999999999999975


No 33 
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00  E-value=3.2e-36  Score=247.99  Aligned_cols=125  Identities=26%  Similarity=0.491  Sum_probs=108.8

Q ss_pred             CCCccccHHHHHHHHHHHhc--CCC-------------CCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCC
Q 030126           22 TPVKKQCAGELRLHKDITEL--NLP-------------EACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPP   85 (182)
Q Consensus        22 ~~~~~~~~a~kRL~kE~~~l--~~~-------------~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~   85 (182)
                      +.......+.+||++|++++  +.+             .|+.+. +. ++|++.|++.| ||++|||+||.|++.|.||+
T Consensus        25 ~~~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~-~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~  102 (193)
T 2f4z_A           25 AQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQ-IV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPP  102 (193)
T ss_dssp             -------CHHHHHHHHHHHHHHC----------------CEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEE-Ec-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCC
Confidence            44455567889999999999  333             688886 44 47999999999 99999999999999999999


Q ss_pred             CCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHH
Q 030126           86 IYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGL  164 (182)
Q Consensus        86 ~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI  164 (182)
                      +||++||+|+|.|+                               +|||||+. +|.|||++|.++|+|+++|++||.+|
T Consensus       103 ~YP~~PP~V~F~T~-------------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI  151 (193)
T 2f4z_A          103 DYPYNPPKMKFVTK-------------------------------IWHPNISSQTGAICLDILKHEWSPALTIRTALLSI  151 (193)
T ss_dssp             TTTTSCCEEEESSC-------------------------------CCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHH
T ss_pred             cCCCCCCeEEEecC-------------------------------CccCCCcCCCCEEECccccccCCCCCCHHHHHHHH
Confidence            99999999999999                               99999995 99999999999999999999999999


Q ss_pred             HHhhcCCCCCCcccc
Q 030126          165 YHLFTVMLDHSIFFA  179 (182)
Q Consensus       165 ~~lL~~P~~~sp~~~  179 (182)
                      ++||.+|++++|+++
T Consensus       152 ~sll~~pnp~~P~n~  166 (193)
T 2f4z_A          152 QAMLADPVPTDPQDA  166 (193)
T ss_dssp             HHHHHSCCTTSCSCH
T ss_pred             HHHHhCCCCCCcccH
Confidence            999999999999985


No 34 
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00  E-value=3.5e-36  Score=238.31  Aligned_cols=119  Identities=33%  Similarity=0.570  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      .+.+||++|++++  +.++|+.+. +.+++|++.|++.|.|++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~-~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-------   73 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNI-QVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK-------   73 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEE-CSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEe-eCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC-------
Confidence            4678999999999  456788764 334789999999999999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-CCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+.+|.||+++|. ++|+|++||++||.+|++||.+|+++||+++
T Consensus        74 ------------------------i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~  123 (154)
T 1c4z_D           74 ------------------------IYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRA  123 (154)
T ss_dssp             ------------------------CCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCH
T ss_pred             ------------------------CccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhH
Confidence                                    999999999999999996 8899999999999999999999999999975


No 35 
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00  E-value=1.2e-36  Score=254.24  Aligned_cols=119  Identities=29%  Similarity=0.557  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhh
Q 030126           29 AGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFL  105 (182)
Q Consensus        29 ~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~  105 (182)
                      ++.+||++|++++  ..++||++. +.++++++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+      
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~-p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~------   74 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLE-FVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK------   74 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEEC-CCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT------
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEE-ECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC------
Confidence            4679999999999  668899986 55345778999999 9999999999999999999999999999999999      


Q ss_pred             hHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          106 NFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                               +|||||+. +|.|||++|.++|+|++||++||.+|++||.+|++++|+++
T Consensus        75 -------------------------i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~  124 (215)
T 1tte_A           75 -------------------------VYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA  124 (215)
T ss_dssp             -------------------------CCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCH
T ss_pred             -------------------------CccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCH
Confidence                                     99999999 99999999999999999999999999999999999999986


No 36 
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00  E-value=1e-35  Score=237.61  Aligned_cols=123  Identities=28%  Similarity=0.468  Sum_probs=112.5

Q ss_pred             cccHHHHHHHHHHHhc--CCCCCceEEcc---CCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITEL--NLPEACKISFP---NGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g~~~~~~---~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ++..+.+||++|++++  +.++|+.+...   ++++|+++|++.| ||++|||+||.|++.|.||++||++||+|+|.|+
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            3456889999999999  67889988632   2246899999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCC--CccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLRE--DWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e--~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                     +|||||+.+|.||+++|.+  +|+|+++|++||.+|++||.+|++++|+
T Consensus        84 -------------------------------i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~  132 (161)
T 2grr_A           84 -------------------------------LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPA  132 (161)
T ss_dssp             -------------------------------CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCS
T ss_pred             -------------------------------cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCcc
Confidence                                           9999999999999999976  8999999999999999999999999998


Q ss_pred             cc
Q 030126          178 FA  179 (182)
Q Consensus       178 ~~  179 (182)
                      +.
T Consensus       133 n~  134 (161)
T 2grr_A          133 QA  134 (161)
T ss_dssp             CH
T ss_pred             CH
Confidence            75


No 37 
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00  E-value=2.3e-35  Score=236.77  Aligned_cols=122  Identities=19%  Similarity=0.319  Sum_probs=109.5

Q ss_pred             cccHHHHHHHHHHHhc--CCCCC-ceEEccCCCCC--cceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           26 KQCAGELRLHKDITEL--NLPEA-CKISFPNGQDD--LMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l--~~~~g-~~~~~~~~~~n--~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ....+.+||++|++++  +.++| +.+...+ ++|  ++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTSSEEEEESS-TTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eechHHHHHHHHHHHHHhCCCCCcEEEEecC-CccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            3467889999999999  44667 6665434 444  89999999 9999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC--CCccccCcHHHHHHHHHHhhc-CCCCCC
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFT-VMLDHS  175 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~-~P~~~s  175 (182)
                                                     +|||||+ .+|.||+++|.  ++|+|++||++||.+|++||. +||+++
T Consensus       101 -------------------------------i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~  149 (160)
T 2a4d_A          101 -------------------------------INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKL  149 (160)
T ss_dssp             -------------------------------CCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTC
T ss_pred             -------------------------------ceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCC
Confidence                                           9999999 59999999998  899999999999999999995 699999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |+++
T Consensus       150 P~n~  153 (160)
T 2a4d_A          150 PQPP  153 (160)
T ss_dssp             CCCC
T ss_pred             CCCh
Confidence            9876


No 38 
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00  E-value=1.4e-35  Score=239.52  Aligned_cols=123  Identities=25%  Similarity=0.448  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHHHhcCC---C------CC---ceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCC
Q 030126           26 KQCAGELRLHKDITELNL---P------EA---CKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAP   92 (182)
Q Consensus        26 ~~~~a~kRL~kE~~~l~~---~------~g---~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP   92 (182)
                      +...+.+||++|++++.+   +      ++   +....+.+++|++.|++.| ||++|||+||.|+++|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            345788999999999943   2      32   2222463478999999999 999999999999999999999999999


Q ss_pred             eeEEee-ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC-CCccccCcHHHHHHHHHHhhc
Q 030126           93 KVKCKT-KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR-EDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus        93 ~v~f~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~-e~W~p~~ti~siL~sI~~lL~  169 (182)
                      +|+|.| +                               +|||||+ .+|.|||++|. ++|+|+++|++||.+|++||.
T Consensus        83 ~v~f~t~~-------------------------------i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~  131 (172)
T 2y9m_A           83 KISFMQNN-------------------------------ILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLR  131 (172)
T ss_dssp             EEEECTTS-------------------------------CCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHH
T ss_pred             EEEEeeCC-------------------------------eecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHh
Confidence            999999 8                               9999996 69999999998 899999999999999999999


Q ss_pred             CCCCCCcccc
Q 030126          170 VMLDHSIFFA  179 (182)
Q Consensus       170 ~P~~~sp~~~  179 (182)
                      +|+++||++.
T Consensus       132 ~p~~~~p~n~  141 (172)
T 2y9m_A          132 EPVCDSPLDV  141 (172)
T ss_dssp             SCCTTSCSSH
T ss_pred             CCCCCCccCH
Confidence            9999999875


No 39 
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00  E-value=1.8e-35  Score=231.45  Aligned_cols=107  Identities=24%  Similarity=0.583  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhc--CCCCCceEEc-cCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           31 ELRLHKDITEL--NLPEACKISF-PNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        31 ~kRL~kE~~~l--~~~~g~~~~~-~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      .+||++|++++  +.++|+.+.. ++ ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~-------   95 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSV-QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE-------   95 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCC-CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS-------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeC-ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC-------
Confidence            49999999999  6788988753 44 78999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccc--cCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVY--HPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~--HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                              +|  ||||+.+|.||+++|.++|+|++||++||.+|++||+
T Consensus        96 ------------------------i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           96 ------------------------NIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             ------------------------CCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             ------------------------CcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence                                    78  9999999999999999999999999999999999985


No 40 
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00  E-value=3.1e-35  Score=234.80  Aligned_cols=124  Identities=19%  Similarity=0.329  Sum_probs=111.3

Q ss_pred             CccccHHHHHHHHHHHhcC---CCCCceEEccCC-CCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEee
Q 030126           24 VKKQCAGELRLHKDITELN---LPEACKISFPNG-QDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKT   98 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l~---~~~g~~~~~~~~-~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t   98 (182)
                      ......+.+||++|++++.   .++|+++..... +.|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t   95 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT   95 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence            3455678899999999993   467888875332 23699999999 999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCce---ecccCCCCccccCcHHHHHHHHHHhhcCCCCCC
Q 030126           99 KVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNV---CLNVLREDWKPVLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~i---Cl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~s  175 (182)
                      +                               +|||||+.+|.|   ||++|+ +|+|+++|++||.+|++||.+|++++
T Consensus        96 ~-------------------------------i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~  143 (156)
T 2q0v_A           96 K-------------------------------IEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKR  143 (156)
T ss_dssp             C-------------------------------CCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTT
T ss_pred             c-------------------------------cccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCC
Confidence            9                               999999999999   899987 59999999999999999999999999


Q ss_pred             cccc
Q 030126          176 IFFA  179 (182)
Q Consensus       176 p~~~  179 (182)
                      |++.
T Consensus       144 p~n~  147 (156)
T 2q0v_A          144 LPQP  147 (156)
T ss_dssp             CCCC
T ss_pred             cCCh
Confidence            9875


No 41 
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00  E-value=2.1e-35  Score=252.19  Aligned_cols=123  Identities=23%  Similarity=0.519  Sum_probs=114.1

Q ss_pred             CccccHHHHHHHHHHHhcC-----CCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030126           24 VKKQCAGELRLHKDITELN-----LPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCK   97 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l~-----~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~   97 (182)
                      ..+...+.+||++|+++|.     .+.|+++. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.
T Consensus        52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~-p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~  129 (253)
T 3e46_A           52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVD-LV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI  129 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEE-EC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEE-EC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence            4456789999999999993     36788886 44 57999999999 99999999999999999999999999999999


Q ss_pred             eccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCc
Q 030126           98 TKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSI  176 (182)
Q Consensus        98 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp  176 (182)
                      |+                               +|||||+. +|.|||++|.++|+|+++|++||.+|++||.+|+++||
T Consensus       130 T~-------------------------------i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~P  178 (253)
T 3e46_A          130 TK-------------------------------IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP  178 (253)
T ss_dssp             SC-------------------------------CCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSC
T ss_pred             CC-------------------------------CccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCCh
Confidence            99                               99999996 99999999999999999999999999999999999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       179 ln~  181 (253)
T 3e46_A          179 QDA  181 (253)
T ss_dssp             SCH
T ss_pred             hhH
Confidence            985


No 42 
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00  E-value=1.5e-35  Score=231.27  Aligned_cols=120  Identities=23%  Similarity=0.466  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHhc--C-CCCCceEEccCCCC-CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccch
Q 030126           28 CAGELRLHKDITEL--N-LPEACKISFPNGQD-DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDI  102 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~-~~~g~~~~~~~~~~-n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~  102 (182)
                      ..+.+||++|++++  + .++|+++...+.++ |+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+   
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~---   81 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK---   81 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC---
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc---
Confidence            46779999999999  3 46788887533222 699999999 9999999999999999999999999999999999   


Q ss_pred             hhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCC-Cce--ecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          103 FFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLE-GNV--CLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~-G~i--Cl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                  +|||||+.+ |.|  ||++|. +|+|+++|++||.+|++||.+|+++||++.
T Consensus        82 ----------------------------i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~  132 (138)
T 1jat_B           82 ----------------------------INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQP  132 (138)
T ss_dssp             ----------------------------CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCC
T ss_pred             ----------------------------cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCc
Confidence                                        999999996 999  999886 899999999999999999999999999875


No 43 
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00  E-value=5.7e-36  Score=237.45  Aligned_cols=117  Identities=25%  Similarity=0.487  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhH
Q 030126           29 AGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNF  107 (182)
Q Consensus        29 ~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~  107 (182)
                      ++.+||++|++++.. .|+.+. +. ++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+        
T Consensus         2 sa~~Rl~kEl~~l~~-~~~~v~-~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--------   70 (152)
T 2onu_A            2 TSLTRKQCDFTKLIM-AGYDLE-LN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--------   70 (152)
T ss_dssp             -CCCHHHHTHHHHHH-HTCCEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--------
T ss_pred             hHHHHHHHHHHhcCc-CCCEEE-Ec-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC--------
Confidence            345899999999954 488876 44 58999999999 9999999999999999999999999999999999        


Q ss_pred             HHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHH-HHHhhcCCCCCCcccc
Q 030126          108 IHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTVMLDHSIFFA  179 (182)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~s-I~~lL~~P~~~sp~~~  179 (182)
                                             +|||||+. +|.||+++|.++|+|+++|++||.+ |++||.+|+++||++.
T Consensus        71 -----------------------i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~  121 (152)
T 2onu_A           71 -----------------------LLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNS  121 (152)
T ss_dssp             -----------------------CCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSH
T ss_pred             -----------------------CccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccH
Confidence                                   99999995 9999999999999999999999999 6899999999999974


No 44 
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00  E-value=9e-35  Score=235.08  Aligned_cols=121  Identities=18%  Similarity=0.316  Sum_probs=108.6

Q ss_pred             ccHHHHHHHHHHHhc--CCCCC-ceEEccCCCC--CcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           27 QCAGELRLHKDITEL--NLPEA-CKISFPNGQD--DLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        27 ~~~a~kRL~kE~~~l--~~~~g-~~~~~~~~~~--n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      ...+.+||++|++++  +.++| +.+...+ ++  |+++|++.| ||++|||+||.|+++|.||++||++||+|+|.|+ 
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~-~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~-  110 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK-  110 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESS-TTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBC-
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecC-cccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecc-
Confidence            355789999999999  45667 5565334 44  499999999 9999999999999999999999999999999999 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCccc-CCCceecccCC--CCccccCcHHHHHHHHHHhhcC-CCCCCc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNID-LEGNVCLNVLR--EDWKPVLNINTIIYGLYHLFTV-MLDHSI  176 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~-~~G~iCl~~L~--e~W~p~~ti~siL~sI~~lL~~-P~~~sp  176 (182)
                                                    +|||||+ .+|.||+++|.  ++|+|++||++||.+|++||.+ ||+++|
T Consensus       111 ------------------------------i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P  160 (170)
T 2hlw_A          111 ------------------------------INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP  160 (170)
T ss_dssp             ------------------------------CCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSC
T ss_pred             ------------------------------cccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCC
Confidence                                          9999999 69999999998  8999999999999999999985 999999


Q ss_pred             ccc
Q 030126          177 FFA  179 (182)
Q Consensus       177 ~~~  179 (182)
                      +++
T Consensus       161 ~n~  163 (170)
T 2hlw_A          161 QPP  163 (170)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            875


No 45 
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00  E-value=3.2e-35  Score=239.71  Aligned_cols=117  Identities=25%  Similarity=0.520  Sum_probs=109.5

Q ss_pred             cHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           28 CAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +.+.+||++|++++. ++|+.+. +.  +|++.|++.| ||++|||+||.|+++|.||++||++||+|+|.|+       
T Consensus        24 ~~a~~RL~kEl~~l~-~~g~~v~-~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~-------   92 (179)
T 2z5d_A           24 SPGKRRMDTDVIKLI-ESKHEVT-IL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK-------   92 (179)
T ss_dssp             CHHHHHHHHHHHHHH-HSSSCEE-EE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             hHHHHHHHHHHHhcC-cCCCEEE-EC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC-------
Confidence            368899999999996 4688886 33  5789999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHH-HHHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYG-LYHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~s-I~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.||+++|.++|+|+++|++||.+ |++||.+|+++||++.
T Consensus        93 ------------------------i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~  143 (179)
T 2z5d_A           93 ------------------------IFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNG  143 (179)
T ss_dssp             ------------------------CCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCH
T ss_pred             ------------------------CccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCH
Confidence                                    99999999 9999999999999999999999999 9999999999999874


No 46 
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00  E-value=8.4e-34  Score=254.50  Aligned_cols=119  Identities=30%  Similarity=0.702  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhh
Q 030126           28 CAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFF  104 (182)
Q Consensus        28 ~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~  104 (182)
                      +.+.+||++|++++  +.++|+++. |. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+     
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~-p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~-----   74 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAG-PV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----   74 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEE-EE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC-----
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc-----
Confidence            36789999999999  678899886 55 58999999999 9999999999999999999999999999999999     


Q ss_pred             hhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhcCCCCCCcccc
Q 030126          105 LNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTVMLDHSIFFA  179 (182)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~~P~~~sp~~~  179 (182)
                                                +|||||+.+|.||+++|.++|+|++||++||.+|++||.+|+++||+++
T Consensus        75 --------------------------i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~  123 (399)
T 4ddg_A           75 --------------------------IYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVP  123 (399)
T ss_dssp             --------------------------CCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSH
T ss_pred             --------------------------ccccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhH
Confidence                                      9999999999999999999999999999999999999999999999975


No 47 
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00  E-value=1.3e-34  Score=234.00  Aligned_cols=117  Identities=24%  Similarity=0.478  Sum_probs=105.2

Q ss_pred             cHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhh
Q 030126           28 CAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLN  106 (182)
Q Consensus        28 ~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~  106 (182)
                      +++.+||++|++++...+ +.+  +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+       
T Consensus        11 ~~~~~RL~~El~~l~~~~-~~v--~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~-------   79 (171)
T 1yf9_A           11 LRSNRRREMDYMRLCNST-RKV--YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR-------   79 (171)
T ss_dssp             --CCHHHHHHHHHHHSSS-SCE--EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC-------
T ss_pred             ccHHHHHHHHHHHHHhCC-CCC--CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC-------
Confidence            456799999999994332 334  23 58999999999 9999999999999999999999999999999999       


Q ss_pred             HHHHHHhhhhhhhhhhhhccCccccccCcccC-CCceecccCCCCccccCcHHHHHHHH-HHhhcCCCCCCcccc
Q 030126          107 FIHMLLLFNHAIKLELYTFESNLQVYHPNIDL-EGNVCLNVLREDWKPVLNINTIIYGL-YHLFTVMLDHSIFFA  179 (182)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~-~G~iCl~~L~e~W~p~~ti~siL~sI-~~lL~~P~~~sp~~~  179 (182)
                                              +|||||+. +|.||+++|.++|+|+++|++||.+| ++||.+|+++||++.
T Consensus        80 ------------------------i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~  130 (171)
T 1yf9_A           80 ------------------------ILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNV  130 (171)
T ss_dssp             ------------------------CCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCH
T ss_pred             ------------------------cccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccH
Confidence                                    99999995 99999999999999999999999997 799999999999874


No 48 
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00  E-value=2.2e-33  Score=225.30  Aligned_cols=122  Identities=23%  Similarity=0.413  Sum_probs=107.5

Q ss_pred             ccccHHHHHHHHHHHhcC--C------------CCCceEEccCCCCCcceeEEee-cCCCCccC--CcEEEEEEEcCCCC
Q 030126           25 KKQCAGELRLHKDITELN--L------------PEACKISFPNGQDDLMNFEVSI-KPDEGYYQ--NGTFVFSFEVPPIY   87 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~--~------------~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYe--gg~f~~~i~fp~~Y   87 (182)
                      ++++.+.+||++|++++.  .            +.|+.+. ++ ++|+++|++.| ||++|||+  ||.|++.|.||++|
T Consensus         4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~-~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~Y   81 (167)
T 4ds2_A            4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS-VD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDY   81 (167)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE-EE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTT
T ss_pred             cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE-eC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCC
Confidence            344567799999999993  2            4567765 44 68999999999 99999999  99999999999999


Q ss_pred             CCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHH-HHHHH
Q 030126           88 PHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTII-YGLYH  166 (182)
Q Consensus        88 P~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL-~sI~~  166 (182)
                      |++||+|+|.|+                               +|||||+.+|.||+++|.++|+|+++++++| ..|++
T Consensus        82 P~~pP~v~f~t~-------------------------------i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~  130 (167)
T 4ds2_A           82 PHEPPTVRFVTP-------------------------------VYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDR  130 (167)
T ss_dssp             TTSCCEEEESSC-------------------------------CCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCC-------------------------------cccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHH
Confidence            999999999999                               9999999999999999999999999999975 46778


Q ss_pred             hhcC--CCCCCcccc
Q 030126          167 LFTV--MLDHSIFFA  179 (182)
Q Consensus       167 lL~~--P~~~sp~~~  179 (182)
                      |+.+  |++++|++.
T Consensus       131 l~~~~~pn~~~p~n~  145 (167)
T 4ds2_A          131 VFSQYKSRRDDDVNP  145 (167)
T ss_dssp             HHTSTTSCCSCCCCH
T ss_pred             HHhcCCCCCcchHhH
Confidence            8875  899999875


No 49 
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98  E-value=1.7e-32  Score=224.52  Aligned_cols=119  Identities=16%  Similarity=0.331  Sum_probs=99.4

Q ss_pred             CccccHHHHHHHHHHHhc--CCCCCceEEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeecc
Q 030126           24 VKKQCAGELRLHKDITEL--NLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKV  100 (182)
Q Consensus        24 ~~~~~~a~kRL~kE~~~l--~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~  100 (182)
                      .++...+.+||++|++++  +.++||.+. +. ++|++.|++.| ||++|||+||.|++.|.||++||++||+|+|.|+ 
T Consensus         9 ~~~~~~a~~RL~kEl~~l~~~~~~~i~~~-p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~-   85 (187)
T 2f4w_A            9 KRAPTTATQRLKQDYLRIKKDPVPYICAE-PL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP-   85 (187)
T ss_dssp             -----CHHHHHHHHHHHHHHSCCTTEEEE-EE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC-
T ss_pred             CCCccHHHHHHHHHHHHHHhCCCCCEEEE-Ec-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC-
Confidence            356678899999999999  578899886 54 68999999999 9999999999999999999999999999999977 


Q ss_pred             chhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccC---CCCccccCcHHHHHHHHHHhhcCCCCCCcc
Q 030126          101 DIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVL---REDWKPVLNINTIIYGLYHLFTVMLDHSIF  177 (182)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L---~e~W~p~~ti~siL~sI~~lL~~P~~~sp~  177 (182)
                                                      ||||+.+|.|||++|   .++|+|+++|.+||.+|++||.+|+++..-
T Consensus        86 --------------------------------~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~  133 (187)
T 2f4w_A           86 --------------------------------NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGS  133 (187)
T ss_dssp             --------------------------------CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTB
T ss_pred             --------------------------------CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcc
Confidence                                            889999999999999   689999999999999999999999987543


No 50 
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.97  E-value=3.4e-32  Score=239.43  Aligned_cols=129  Identities=25%  Similarity=0.433  Sum_probs=111.2

Q ss_pred             ccccHHHHHHHHHHHhc--CCCCCce--EEccCCCCCcceeEEee-cCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           25 KKQCAGELRLHKDITEL--NLPEACK--ISFPNGQDDLMNFEVSI-KPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l--~~~~g~~--~~~~~~~~n~~~w~v~i-gp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .....+.+||++|+++|  ..|+|+.  +.+...++|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|+
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            45678999999999999  5566643  22222268999999999 9999999999999999999999999999999998


Q ss_pred             cchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-------CCccccC-cHHHHHHHHHHhhc--
Q 030126          100 VDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-------EDWKPVL-NINTIIYGLYHLFT--  169 (182)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-------e~W~p~~-ti~siL~sI~~lL~--  169 (182)
                                                +++..+|||||+.+|.|||++|.       ++|+|++ ||.+||++|++||.  
T Consensus       152 --------------------------~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~  205 (323)
T 3ceg_A          152 --------------------------GGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVA  205 (323)
T ss_dssp             --------------------------TTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCS
T ss_pred             --------------------------CCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCC
Confidence                                      23334899999999999999997       6899999 89999999999996  


Q ss_pred             CCCCCCcccc
Q 030126          170 VMLDHSIFFA  179 (182)
Q Consensus       170 ~P~~~sp~~~  179 (182)
                      +|++++|++.
T Consensus       206 ~Pn~~dP~~~  215 (323)
T 3ceg_A          206 EPYFNEPGYE  215 (323)
T ss_dssp             SGGGGSTTGG
T ss_pred             CCCCCCccCH
Confidence            7777999875


No 51 
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97  E-value=3.8e-32  Score=222.35  Aligned_cols=119  Identities=17%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             CCccccHHHHHHHHHHHhcCC-----CCCceEEccCCCCCcceeEEee-cC-CCCccCC-----------cEEEEEEEcC
Q 030126           23 PVKKQCAGELRLHKDITELNL-----PEACKISFPNGQDDLMNFEVSI-KP-DEGYYQN-----------GTFVFSFEVP   84 (182)
Q Consensus        23 ~~~~~~~a~kRL~kE~~~l~~-----~~g~~~~~~~~~~n~~~w~v~i-gp-~~tpYeg-----------g~f~~~i~fp   84 (182)
                      ...+...+.+||++|++++..     +.|+.+. +. ++|++.|++.| || ++|||+|           |.|++.|.||
T Consensus        21 ~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp   98 (186)
T 1zuo_A           21 AVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE-LI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK   98 (186)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSHHHHTTSEEEE-EE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             cccccHHHHHHHHHHHHHHHhCCCCCCCcEEEE-Ec-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence            344566889999999999933     4678876 44 58999999999 97 8999998           8999999999


Q ss_pred             CCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccC-cccCCCceecccCC-CCccccCcHHHHHH
Q 030126           85 PIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHP-NIDLEGNVCLNVLR-EDWKPVLNINTIIY  162 (182)
Q Consensus        85 ~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HP-nI~~~G~iCl~~L~-e~W~p~~ti~siL~  162 (182)
                      ++||++||+|+|.|+                               ++|| ||+.+|.|||++|. ++|+|+++|++||.
T Consensus        99 ~~YP~~PP~V~f~tp-------------------------------i~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~  147 (186)
T 1zuo_A           99 DNFPFDPPFVRVVLP-------------------------------VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIM  147 (186)
T ss_dssp             TTTTSSCCEEEEEES-------------------------------CEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHH
T ss_pred             CCCCCCCCeEEEeCC-------------------------------ccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHH
Confidence            999999999999999                               9999 69999999999997 78999999999999


Q ss_pred             HHHHhhcCCCCC
Q 030126          163 GLYHLFTVMLDH  174 (182)
Q Consensus       163 sI~~lL~~P~~~  174 (182)
                      +|++||.+|+..
T Consensus       148 sI~slL~~p~a~  159 (186)
T 1zuo_A          148 QINATLVKGKAR  159 (186)
T ss_dssp             HHHHHHHHTTCE
T ss_pred             HHHHHHcCCChh
Confidence            999999999754


No 52 
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.86  E-value=4.8e-23  Score=166.68  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ...-...+||.+|++.+.+    ++ .+. .+|++.|.+.+ ||.+|+|+||          .|.++|.||++||.+||+
T Consensus        28 ~~~~~w~~RL~eE~k~L~k----~v-~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe  101 (172)
T 2z6o_A           28 RDRELWVQRLKEEYQSLIR----YV-ENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE  101 (172)
T ss_dssp             TCTHHHHHHHHHHHHHHHH----HH-HHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CccHHHHHHHHHHHHHHHH----Hh-ccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence            4456779999999999955    22 233 57999999999 9999999999          999999999999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCC-C---CccccCcHHHHHH
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLR-E---DWKPVLNINTIIY  162 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~-e---~W~p~~ti~siL~  162 (182)
                      |+|.+..                              ++|||||.+|+||||+|. .   .|+|.++|..+|.
T Consensus       102 V~F~~~~------------------------------~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          102 IAVPELD------------------------------GKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             CBCGGGT------------------------------TTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             eeeCCCC------------------------------CCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            9999874                              899999999999999994 3   4559999999974


No 53 
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.70  E-value=2.5e-17  Score=132.52  Aligned_cols=121  Identities=18%  Similarity=0.273  Sum_probs=87.7

Q ss_pred             HHHHHHHHhc-CCCCCceEE---ccCCCCCcceeEEee-cCCCCccCCcE---EEEEEEcCCCCCCCCCeeEEeeccchh
Q 030126           32 LRLHKDITEL-NLPEACKIS---FPNGQDDLMNFEVSI-KPDEGYYQNGT---FVFSFEVPPIYPHDAPKVKCKTKVDIF  103 (182)
Q Consensus        32 kRL~kE~~~l-~~~~g~~~~---~~~~~~n~~~w~v~i-gp~~tpYegg~---f~~~i~fp~~YP~~pP~v~f~t~~~~~  103 (182)
                      +|..+|..++ ..-+++..+   ... +|...++-+.+ |.-..+|+||+   |.+.|.||.+||++||.|.|.++.   
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t---  106 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN---  106 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG---
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC---
Confidence            4555666655 222222222   122 36667777777 87789999999   889999999999999999775421   


Q ss_pred             hhhHHHHHHhhhhhhhhhhhhccCccccc-cCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcCCCCCC
Q 030126          104 FLNFIHMLLLFNHAIKLELYTFESNLQVY-HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTVMLDHS  175 (182)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~P~~~s  175 (182)
                                      .+|..  ..-.++ |||||.+|+||++.|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus       107 ----------------~~m~~--~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          107 ----------------FDMNT--ISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             ----------------CCTTT--SCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ----------------ccccc--cccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                            00000  000156 9999999999999995 6999 6899999999999999999974


No 54 
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.58  E-value=1.9e-16  Score=126.40  Aligned_cols=94  Identities=14%  Similarity=0.263  Sum_probs=76.6

Q ss_pred             ccccHHHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEee-cCCCCccCCc----------EEEEEEEcCCCCCCCCCe
Q 030126           25 KKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSI-KPDEGYYQNG----------TFVFSFEVPPIYPHDAPK   93 (182)
Q Consensus        25 ~~~~~a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~i-gp~~tpYegg----------~f~~~i~fp~~YP~~pP~   93 (182)
                      ........||.+||..|     |... ....++-..|...+ |+.+|+|+|+          .|.++|+||.+||..||+
T Consensus        30 rd~~~w~~RlkeEy~al-----I~yv-~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           30 RDGDKWTARLKEEYASL-----ITYV-EHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             TSTHHHHHHHHHHHHHH-----HHHH-HHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHH-----HHHH-HhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            33456889999999987     3221 11123335788888 9999999999          999999999999999999


Q ss_pred             eEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcH
Q 030126           94 VKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNI  157 (182)
Q Consensus        94 v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti  157 (182)
                      |+|.+..                              .+|||+|.+|+||||++   |+|+|+-
T Consensus       104 I~Fp~ld------------------------------gkt~kmYr~GkICLdIh---wkPlW~~  134 (168)
T 3kpa_A          104 IALPELE------------------------------GKTVKMYRGGKICMTTH---FFPLWAR  134 (168)
T ss_dssp             CBCGGGT------------------------------TTCSSEETTTEECCCTT---HHHHHHH
T ss_pred             eeccccc------------------------------CcCccccCCCcEEeccc---cchhhHh
Confidence            9998863                              79999999999999997   8887763


No 55 
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.34  E-value=1.7e-12  Score=102.63  Aligned_cols=86  Identities=22%  Similarity=0.323  Sum_probs=72.7

Q ss_pred             CCCcceeEEeecCCCCccCCcEEEE--EEEcCCCCCCCCCeeEEeeccchhhhhHHHHHHhhhhhhhhhhhhccCccccc
Q 030126           55 QDDLMNFEVSIKPDEGYYQNGTFVF--SFEVPPIYPHDAPKVKCKTKVDIFFLNFIHMLLLFNHAIKLELYTFESNLQVY  132 (182)
Q Consensus        55 ~~n~~~w~v~igp~~tpYegg~f~~--~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (182)
                      ..++..|..+|.   .+|+|++|.+  .|-||++||++||.| |.++.                         .+-.+.+
T Consensus        50 ~~~LL~l~GtIp---v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt-------------------------~~m~I~~  100 (146)
T 3obq_A           50 SRELMNLTGTIP---VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPT-------------------------SSMTIKT  100 (146)
T ss_dssp             TCEEEEEEEEEE---EECSSCEEEEEEEEECCTTTTTSCCEE-EECCC-------------------------TTEEECC
T ss_pred             hheEEEEEEEee---eeecCccccceEEEEeCccCCCCCCEE-EEeCC-------------------------CCCEECC
Confidence            468888888885   6799999995  899999999999999 66662                         1222358


Q ss_pred             cCcccCCCceecccCCCCccc-cCcHHHHHHHHHHhhcC
Q 030126          133 HPNIDLEGNVCLNVLREDWKP-VLNINTIIYGLYHLFTV  170 (182)
Q Consensus       133 HPnI~~~G~iCl~~L~e~W~p-~~ti~siL~sI~~lL~~  170 (182)
                      |||||.+|+||++.|.+ |++ ..+|.+++..+++.|.+
T Consensus       101 ~~~Vd~~G~i~lpyL~~-W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A          101 GKHVDANGKIYLPYLHE-WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             BTTBCTTCBBCCHHHHT-CCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEecccccc-cCCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999965 988 79999999999999986


No 56 
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94  E-value=0.044  Score=40.52  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCCCCceEEccCCCCCcceeEEeecCC-CCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           30 GELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPD-EGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        30 a~kRL~kE~~~l~~~~g~~~~~~~~~~n~~~w~v~igp~-~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+...|+..|...-+-.+..-  .+....+.+.+.+. +..-+.-.+.+.|.+|++||..||.+.+.++
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   79 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ   79 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC
Confidence            44566788877732212222211  12346677777332 2222334788999999999999999998874


No 57 
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.88  E-value=0.18  Score=37.67  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhcCCCCCceEEccCCC------CCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           30 GELRLHKDITELNLPEACKISFPNGQ------DDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        30 a~kRL~kE~~~l~~~~g~~~~~~~~~------~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+...|+..|...-|-.+......      +....+.+.+.+....-..-...+.|.+|++||..+|.|.+.+.
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDKEPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSCSSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCCCCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            34456777877743322223221110      12456777775432221234788999999999999999998765


No 58 
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.10  E-value=0.22  Score=36.68  Aligned_cols=67  Identities=19%  Similarity=0.392  Sum_probs=38.3

Q ss_pred             HHHHHHHhcCC--CCCceEEccCCCCCcceeEEeecCC-CCcc--CCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           33 RLHKDITELNL--PEACKISFPNGQDDLMNFEVSIKPD-EGYY--QNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        33 RL~kE~~~l~~--~~g~~~~~~~~~~n~~~w~v~igp~-~tpY--egg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      +...|+..|..  +..+...-.........+.+.+.+. +..-  ..-.+.+.|.+|++||..+|.|.+.+.
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            46677776622  2333332111001234455555332 1111  124788999999999999999998876


No 59 
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.08  E-value=0.76  Score=33.97  Aligned_cols=69  Identities=13%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhcCC--CCCceEEccCCCC-----CcceeEEeecCCC-C-ccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           29 AGELRLHKDITELNL--PEACKISFPNGQD-----DLMNFEVSIKPDE-G-YYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        29 ~a~kRL~kE~~~l~~--~~g~~~~~~~~~~-----n~~~w~v~igp~~-t-pYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ....+...|+..|..  +..+...  ....     ....+.+.+.+.+ . .-..-.+.+.|.||++||..+|.|.+...
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~--~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   87 (137)
T 1ukx_A           10 SYSQRQDHELQALEAIYGSDFQDL--RPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSEEEC--CCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHCcccceec--cCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecC
Confidence            444567788877722  2223221  1111     1345666664432 1 00124688999999999999999988544


No 60 
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=92.63  E-value=0.52  Score=38.23  Aligned_cols=82  Identities=12%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             HHHHHHHhcCCCCCce-EEccCCCCCcceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeeccchhhhhHHHHH
Q 030126           33 RLHKDITELNLPEACK-ISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVDIFFLNFIHML  111 (182)
Q Consensus        33 RL~kE~~~l~~~~g~~-~~~~~~~~n~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~~~~~~  111 (182)
                      +|.+|+.++    |.. +..-  .+++...++.+-...    |....+.|.++.+||.++|.+...-|.           
T Consensus         5 ~li~Ei~~i----GW~~l~~i--d~~~~~i~l~~~D~~----gR~H~l~v~l~~~yp~~~P~~~~DlP~-----------   63 (186)
T 3zqs_A            5 SLIEEIGTL----GWDKLVYA--DTCFSTIKLKAEDAS----GREHLITLKLKAKYPAESPDYFVDFPV-----------   63 (186)
T ss_dssp             SHHHHHHHH----CGGGEEEE--CTTSSEEEEEEECTT----SCEEEEEEECCTTTTTSCCEEECCCSS-----------
T ss_pred             HHHHHHHHh----CCceeeee--cCCccEEEEEEEeCC----CCeEEEEEEECCCCCCCCCeeEEcCCC-----------
Confidence            578888877    221 1111  257888888884332    788999999999999999988776662           


Q ss_pred             HhhhhhhhhhhhhccCccccccCcccCCCceecccCCCCccccCcHHHHHHHHHHhhc
Q 030126          112 LLFNHAIKLELYTFESNLQVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFT  169 (182)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~HPnI~~~G~iCl~~L~e~W~p~~ti~siL~sI~~lL~  169 (182)
                                         .+               .-.|+|..++.+++...+..|.
T Consensus        64 -------------------~~---------------~~~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           64 -------------------PF---------------CASWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             -------------------CC---------------CCCCCTTCCHHHHHHHHHHHHH
T ss_pred             -------------------Cc---------------ccccCCCccHHHHHHHHHHHHH
Confidence                               11               1269999999999887777664


No 61 
>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A {Homo sapiens}
Probab=92.28  E-value=0.069  Score=30.42  Aligned_cols=19  Identities=37%  Similarity=0.711  Sum_probs=15.5

Q ss_pred             CcchhhhhhhhhhhhhhCC
Q 030126            1 MIRLFKVKEKQKEDAENNT   19 (182)
Q Consensus         1 ~~~~~k~~~~~~~~~~~~~   19 (182)
                      ||++|.+|+++++++.+++
T Consensus         1 MIkLFSlK~kk~~e~~~~a   19 (26)
T 1tt5_E            1 MIKLFSLKQQKKEEESAGG   19 (26)
T ss_pred             CcchhhhhHHHHHhhcccc
Confidence            8999999999976666554


No 62 
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.90  E-value=0.2  Score=37.01  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             cceeEEeecCCCCccCCcEEEEEEEcCCCCCCCCCeeEEeec
Q 030126           58 LMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        58 ~~~w~v~igp~~tpYegg~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      ...+.+.+.+.+..=..-.+.+.|.+|++||..+|.|.+.++
T Consensus        39 ~~~f~i~l~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   80 (128)
T 2ebk_A           39 GTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISINSE   80 (128)
T ss_dssp             CEEEEEEEECCTTTTCCCEEEEEEEECSSTTSSCCCCCCCCS
T ss_pred             CCeEEEEecCCCCCCCCeEEEEEEECCCCCCCCCCeEEEEhh
Confidence            457888884443110124789999999999999999987754


No 63 
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.14  E-value=0.38  Score=36.72  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCCCCCCeeEEeec
Q 030126           76 TFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .+.+.|.+|++||..||.+.+...
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999998876


No 64 
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=86.48  E-value=0.64  Score=35.75  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             EEEEEEEcCCCCCCCCCeeEEeec
Q 030126           76 TFVFSFEVPPIYPHDAPKVKCKTK   99 (182)
Q Consensus        76 ~f~~~i~fp~~YP~~pP~v~f~t~   99 (182)
                      .+.+.|.+|.+||..+|.|...+.
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC
Confidence            899999999999999999998876


Done!