Query 030127
Match_columns 182
No_of_seqs 269 out of 1559
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3448 CBS-domain-containing 99.5 1.1E-13 2.3E-18 116.2 6.6 102 77-180 239-375 (382)
2 TIGR03520 GldE gliding motilit 99.4 2.3E-12 5.1E-17 113.8 11.2 101 78-178 186-312 (408)
3 PRK15094 magnesium/cobalt effl 99.4 3.8E-12 8.3E-17 108.0 10.9 102 78-179 62-191 (292)
4 COG2524 Predicted transcriptio 99.4 2.6E-12 5.6E-17 105.9 9.3 97 79-178 168-292 (294)
5 COG4109 Predicted transcriptio 99.3 3.5E-12 7.6E-17 109.2 8.5 101 78-178 183-307 (432)
6 cd04614 CBS_pair_1 The CBS dom 99.3 2.6E-11 5.7E-16 85.5 8.8 81 94-174 2-95 (96)
7 cd04618 CBS_pair_5 The CBS dom 99.3 3.5E-11 7.6E-16 85.5 9.4 81 94-174 2-97 (98)
8 COG3620 Predicted transcriptio 99.3 1.4E-11 3E-16 95.2 7.5 94 81-178 63-185 (187)
9 PRK11543 gutQ D-arabinose 5-ph 99.3 2.5E-11 5.5E-16 103.3 9.2 92 82-175 196-318 (321)
10 PF00571 CBS: CBS domain CBS d 99.3 1.9E-11 4.2E-16 78.1 6.3 55 85-141 1-55 (57)
11 PRK11573 hypothetical protein; 99.2 5.5E-11 1.2E-15 105.3 11.3 102 78-179 182-313 (413)
12 cd04641 CBS_pair_28 The CBS do 99.2 8E-11 1.7E-15 85.4 10.3 81 94-174 2-119 (120)
13 cd04603 CBS_pair_KefB_assoc Th 99.2 1.6E-10 3.4E-15 83.0 9.9 81 94-174 2-110 (111)
14 PRK01862 putative voltage-gate 99.2 9.1E-11 2E-15 107.6 9.7 98 79-178 443-572 (574)
15 cd04619 CBS_pair_6 The CBS dom 99.2 2E-10 4.3E-15 82.7 9.5 81 94-174 2-113 (114)
16 COG1253 TlyC Hemolysins and re 99.2 1.9E-10 4E-15 102.3 11.2 104 77-180 200-331 (429)
17 PRK07807 inosine 5-monophospha 99.2 2E-10 4.4E-15 103.4 10.9 96 80-177 86-205 (479)
18 cd04608 CBS_pair_PALP_assoc Th 99.2 2.4E-10 5.2E-15 84.2 9.1 83 94-176 3-124 (124)
19 cd04596 CBS_pair_DRTGG_assoc T 99.2 3E-10 6.4E-15 80.8 9.3 82 93-174 2-107 (108)
20 cd04593 CBS_pair_EriC_assoc_ba 99.1 3.4E-10 7.3E-15 81.3 9.2 82 94-175 2-115 (115)
21 PRK10892 D-arabinose 5-phospha 99.1 2.2E-10 4.7E-15 97.9 9.6 94 81-175 200-323 (326)
22 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 5.4E-10 1.2E-14 78.8 9.7 81 94-174 2-105 (106)
23 cd04583 CBS_pair_ABC_OpuCA_ass 99.1 6.3E-10 1.4E-14 78.6 9.6 81 94-174 3-108 (109)
24 cd04590 CBS_pair_CorC_HlyC_ass 99.1 6.4E-10 1.4E-14 79.1 9.4 81 94-174 2-110 (111)
25 cd04605 CBS_pair_MET2_assoc Th 99.1 9.3E-10 2E-14 78.1 10.1 81 94-174 3-109 (110)
26 cd04624 CBS_pair_11 The CBS do 99.1 8.1E-10 1.7E-14 78.6 9.7 81 94-174 2-111 (112)
27 cd04600 CBS_pair_HPP_assoc Thi 99.1 8.5E-10 1.9E-14 79.9 9.6 81 94-174 3-123 (124)
28 cd04617 CBS_pair_4 The CBS dom 99.1 6.9E-10 1.5E-14 80.3 8.9 81 94-174 2-117 (118)
29 cd04639 CBS_pair_26 The CBS do 99.1 8E-10 1.7E-14 78.6 9.1 81 94-174 2-110 (111)
30 cd04630 CBS_pair_17 The CBS do 99.1 8.4E-10 1.8E-14 79.2 9.2 80 94-174 2-113 (114)
31 cd04643 CBS_pair_30 The CBS do 99.1 1E-09 2.3E-14 78.4 9.5 79 94-174 2-115 (116)
32 cd04623 CBS_pair_10 The CBS do 99.1 1.3E-09 2.8E-14 77.3 9.6 80 94-174 2-112 (113)
33 cd04627 CBS_pair_14 The CBS do 99.1 1.2E-09 2.5E-14 79.6 9.3 80 94-173 2-121 (123)
34 cd04607 CBS_pair_NTP_transfera 99.1 1.5E-09 3.2E-14 77.6 9.6 81 94-174 3-112 (113)
35 TIGR00400 mgtE Mg2+ transporte 99.1 1E-09 2.3E-14 98.1 10.7 98 79-178 127-253 (449)
36 cd04615 CBS_pair_2 The CBS dom 99.1 1.3E-09 2.7E-14 77.8 9.1 81 94-174 2-112 (113)
37 cd04801 CBS_pair_M50_like This 99.1 6.4E-10 1.4E-14 79.7 7.5 81 94-174 2-113 (114)
38 cd04642 CBS_pair_29 The CBS do 99.1 1.3E-09 2.8E-14 79.8 9.1 81 94-174 2-125 (126)
39 cd04588 CBS_pair_CAP-ED_DUF294 99.0 2.7E-09 5.8E-14 75.7 10.0 80 94-174 2-109 (110)
40 cd04612 CBS_pair_SpoIVFB_EriC_ 99.0 2.5E-09 5.3E-14 75.7 9.7 80 94-174 2-110 (111)
41 cd04613 CBS_pair_SpoIVFB_EriC_ 99.0 2.1E-09 4.6E-14 76.3 9.2 81 94-174 2-113 (114)
42 cd04606 CBS_pair_Mg_transporte 99.0 1.6E-09 3.5E-14 77.1 8.2 79 98-176 2-109 (109)
43 cd04803 CBS_pair_15 The CBS do 99.0 2.4E-09 5.1E-14 77.3 9.2 81 94-174 2-121 (122)
44 cd04626 CBS_pair_13 The CBS do 99.0 2.1E-09 4.5E-14 76.5 8.7 80 94-174 2-110 (111)
45 cd04631 CBS_pair_18 The CBS do 99.0 2.4E-09 5.2E-14 77.6 9.1 81 94-174 2-124 (125)
46 cd04604 CBS_pair_KpsF_GutQ_ass 99.0 2.3E-09 4.9E-14 76.3 8.8 81 94-174 3-113 (114)
47 TIGR01137 cysta_beta cystathio 99.0 1.2E-09 2.6E-14 97.2 8.6 93 80-177 332-454 (454)
48 cd04635 CBS_pair_22 The CBS do 99.0 2.6E-09 5.6E-14 77.1 8.7 81 94-174 2-121 (122)
49 cd04602 CBS_pair_IMPDH_2 This 99.0 4E-09 8.8E-14 75.7 9.3 81 94-174 3-113 (114)
50 cd04629 CBS_pair_16 The CBS do 99.0 1.7E-09 3.6E-14 77.1 7.2 80 94-174 2-113 (114)
51 TIGR01302 IMP_dehydrog inosine 99.0 2.9E-09 6.2E-14 95.3 10.3 93 83-177 80-201 (450)
52 cd04586 CBS_pair_BON_assoc Thi 99.0 2.8E-09 6E-14 78.9 8.0 80 94-174 3-134 (135)
53 cd04601 CBS_pair_IMPDH This cd 99.0 4.9E-09 1.1E-13 74.1 9.0 81 94-174 3-109 (110)
54 PRK05567 inosine 5'-monophosph 99.0 4E-09 8.7E-14 95.2 10.5 91 84-176 88-204 (486)
55 cd04636 CBS_pair_23 The CBS do 99.0 4.2E-09 9.1E-14 77.6 8.8 80 94-174 2-131 (132)
56 cd04621 CBS_pair_8 The CBS dom 99.0 4.6E-09 1E-13 78.5 9.0 80 94-174 2-134 (135)
57 cd04640 CBS_pair_27 The CBS do 99.0 7.7E-09 1.7E-13 75.7 9.9 81 94-174 2-125 (126)
58 cd04599 CBS_pair_GGDEF_assoc2 99.0 7.7E-09 1.7E-13 72.6 9.4 79 94-174 2-104 (105)
59 cd04610 CBS_pair_ParBc_assoc T 99.0 7.7E-09 1.7E-13 72.8 9.4 80 94-174 3-106 (107)
60 cd04622 CBS_pair_9 The CBS dom 98.9 7.4E-09 1.6E-13 73.6 9.3 80 94-174 2-112 (113)
61 cd04611 CBS_pair_PAS_GGDEF_DUF 98.9 9.1E-09 2E-13 72.8 9.7 80 94-174 2-110 (111)
62 cd04595 CBS_pair_DHH_polyA_Pol 98.9 8.4E-09 1.8E-13 73.2 9.2 79 94-174 3-109 (110)
63 TIGR01303 IMP_DH_rel_1 IMP deh 98.9 6.6E-09 1.4E-13 93.6 10.7 95 80-177 85-203 (475)
64 cd04620 CBS_pair_7 The CBS dom 98.9 7.6E-09 1.7E-13 74.0 9.0 80 94-174 2-114 (115)
65 cd02205 CBS_pair The CBS domai 98.9 1.2E-08 2.5E-13 71.2 9.7 81 94-174 2-112 (113)
66 cd04800 CBS_pair_CAP-ED_DUF294 98.9 9.3E-09 2E-13 73.0 9.3 79 94-174 2-110 (111)
67 cd04585 CBS_pair_ACT_assoc2 Th 98.9 1E-08 2.2E-13 73.5 9.5 80 94-174 2-121 (122)
68 cd04594 CBS_pair_EriC_assoc_ar 98.9 8.6E-09 1.9E-13 72.9 9.0 77 96-174 4-103 (104)
69 TIGR00393 kpsF KpsF/GutQ famil 98.9 3E-09 6.5E-14 88.2 7.6 85 82-168 154-268 (268)
70 cd04587 CBS_pair_CAP-ED_DUF294 98.9 7.7E-09 1.7E-13 73.5 8.6 80 94-174 2-112 (113)
71 cd04609 CBS_pair_PALP_assoc2 T 98.9 1.2E-08 2.6E-13 71.9 9.1 78 94-174 2-109 (110)
72 PRK07107 inosine 5-monophospha 98.9 6.5E-09 1.4E-13 94.2 9.4 94 83-176 94-219 (502)
73 COG4535 CorC Putative Mg2+ and 98.9 1.3E-09 2.9E-14 89.3 4.4 99 80-178 64-190 (293)
74 cd04632 CBS_pair_19 The CBS do 98.9 1.5E-08 3.3E-13 74.0 9.8 81 94-174 2-127 (128)
75 cd04589 CBS_pair_CAP-ED_DUF294 98.9 1.5E-08 3.3E-13 72.0 9.4 79 94-174 2-110 (111)
76 PLN02274 inosine-5'-monophosph 98.9 1.5E-08 3.3E-13 91.9 10.9 90 86-177 103-222 (505)
77 cd04637 CBS_pair_24 The CBS do 98.9 1.9E-08 4.2E-13 72.6 9.3 80 94-174 2-121 (122)
78 PTZ00314 inosine-5'-monophosph 98.9 1.3E-08 2.8E-13 92.2 9.4 91 84-176 97-217 (495)
79 COG4536 CorB Putative Mg2+ and 98.8 6.9E-09 1.5E-13 89.8 7.0 101 78-178 195-325 (423)
80 cd04584 CBS_pair_ACT_assoc Thi 98.8 2.4E-08 5.1E-13 71.8 8.7 80 94-174 2-120 (121)
81 cd04591 CBS_pair_EriC_assoc_eu 98.8 1.8E-08 3.9E-13 71.9 8.0 80 94-174 3-104 (105)
82 cd04638 CBS_pair_25 The CBS do 98.8 4.2E-08 9.1E-13 69.2 9.5 80 94-174 2-105 (106)
83 COG2905 Predicted signal-trans 98.8 9.5E-09 2.1E-13 92.8 7.1 98 78-178 144-271 (610)
84 cd04603 CBS_pair_KefB_assoc Th 98.8 1.5E-08 3.2E-13 72.6 6.6 55 83-139 56-110 (111)
85 cd04802 CBS_pair_3 The CBS dom 98.8 5E-08 1.1E-12 69.3 9.3 79 94-174 2-111 (112)
86 cd04633 CBS_pair_20 The CBS do 98.8 4.3E-08 9.4E-13 70.6 8.8 79 94-174 2-120 (121)
87 cd04625 CBS_pair_12 The CBS do 98.8 5.2E-08 1.1E-12 69.2 9.1 79 94-174 2-111 (112)
88 COG0517 FOG: CBS domain [Gener 98.8 5.9E-08 1.3E-12 69.2 9.3 84 87-173 3-117 (117)
89 PRK14869 putative manganese-de 98.8 3E-08 6.5E-13 90.5 9.3 56 82-139 67-122 (546)
90 cd04598 CBS_pair_GGDEF_assoc T 98.7 6.9E-08 1.5E-12 69.3 8.7 80 94-174 2-118 (119)
91 COG2239 MgtE Mg/Co/Ni transpor 98.7 3.7E-08 8E-13 88.1 8.8 97 80-178 129-254 (451)
92 cd04619 CBS_pair_6 The CBS dom 98.7 3.6E-08 7.9E-13 70.8 6.8 57 81-139 57-113 (114)
93 cd04607 CBS_pair_NTP_transfera 98.7 2.5E-08 5.3E-13 71.2 5.2 56 82-139 57-112 (113)
94 cd04597 CBS_pair_DRTGG_assoc2 98.7 4.1E-08 8.8E-13 71.4 6.2 55 83-139 58-112 (113)
95 cd04634 CBS_pair_21 The CBS do 98.7 1.1E-07 2.5E-12 71.3 8.7 45 94-139 2-46 (143)
96 cd04596 CBS_pair_DRTGG_assoc T 98.7 6.3E-08 1.4E-12 68.7 6.2 56 82-139 52-107 (108)
97 cd04606 CBS_pair_Mg_transporte 98.7 8.4E-08 1.8E-12 68.1 6.6 58 81-140 51-108 (109)
98 COG2524 Predicted transcriptio 98.6 4.7E-08 1E-12 81.0 5.6 64 77-142 228-291 (294)
99 cd04610 CBS_pair_ParBc_assoc T 98.6 1.4E-07 3E-12 66.3 6.7 56 82-139 51-106 (107)
100 cd04600 CBS_pair_HPP_assoc Thi 98.6 1.3E-07 2.8E-12 68.3 6.5 57 81-139 67-123 (124)
101 cd04620 CBS_pair_7 The CBS dom 98.6 1.7E-07 3.8E-12 66.9 6.5 56 82-139 57-114 (115)
102 cd04627 CBS_pair_14 The CBS do 98.6 2.1E-07 4.6E-12 67.5 6.8 52 86-139 71-122 (123)
103 PRK11543 gutQ D-arabinose 5-ph 98.6 9.4E-08 2E-12 81.4 5.4 59 81-141 261-319 (321)
104 cd04599 CBS_pair_GGDEF_assoc2 98.6 2.2E-07 4.9E-12 65.0 6.5 68 69-139 37-104 (105)
105 cd04617 CBS_pair_4 The CBS dom 98.6 2E-07 4.3E-12 67.3 6.3 59 81-139 56-117 (118)
106 cd04630 CBS_pair_17 The CBS do 98.5 1.7E-07 3.7E-12 67.1 5.9 56 81-139 58-113 (114)
107 cd04635 CBS_pair_22 The CBS do 98.5 1.7E-07 3.6E-12 67.6 5.5 57 81-139 65-121 (122)
108 cd04626 CBS_pair_13 The CBS do 98.5 1.6E-07 3.4E-12 66.7 4.9 55 82-139 56-110 (111)
109 cd04624 CBS_pair_11 The CBS do 98.5 1.7E-07 3.7E-12 66.5 5.1 56 82-139 56-111 (112)
110 cd04639 CBS_pair_26 The CBS do 98.5 1.4E-07 3E-12 66.9 4.6 55 83-139 56-110 (111)
111 cd04625 CBS_pair_12 The CBS do 98.5 3.4E-07 7.4E-12 64.9 6.6 55 82-139 57-111 (112)
112 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 1.5E-07 3.2E-12 66.7 4.6 55 83-139 58-113 (114)
113 cd04618 CBS_pair_5 The CBS dom 98.5 3.3E-07 7.2E-12 64.8 6.1 45 95-139 52-97 (98)
114 cd04615 CBS_pair_2 The CBS dom 98.5 4.3E-07 9.2E-12 64.5 6.7 57 81-139 56-112 (113)
115 cd04801 CBS_pair_M50_like This 98.5 2.8E-07 6.1E-12 65.8 5.6 58 82-139 56-113 (114)
116 cd04604 CBS_pair_KpsF_GutQ_ass 98.5 4.1E-07 9E-12 64.5 6.5 55 83-139 59-113 (114)
117 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 2.2E-07 4.8E-12 65.6 5.0 55 83-139 56-110 (111)
118 cd04587 CBS_pair_CAP-ED_DUF294 98.5 3.3E-07 7.1E-12 65.0 5.8 55 83-139 58-112 (113)
119 cd04585 CBS_pair_ACT_assoc2 Th 98.5 4.2E-07 9.1E-12 65.0 6.4 56 82-139 66-121 (122)
120 cd04593 CBS_pair_EriC_assoc_ba 98.5 4.8E-07 1E-11 64.7 6.7 55 83-139 58-114 (115)
121 TIGR00400 mgtE Mg2+ transporte 98.5 2.7E-07 5.8E-12 82.6 6.6 73 69-143 181-253 (449)
122 cd04586 CBS_pair_BON_assoc Thi 98.5 1.5E-07 3.2E-12 69.6 4.1 56 81-139 79-134 (135)
123 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 3.4E-07 7.5E-12 64.4 5.9 55 83-139 54-108 (109)
124 cd04582 CBS_pair_ABC_OpuCA_ass 98.5 5.5E-07 1.2E-11 63.2 6.8 54 84-139 52-105 (106)
125 cd04803 CBS_pair_15 The CBS do 98.5 5.3E-07 1.2E-11 64.9 6.8 57 81-139 65-121 (122)
126 cd04641 CBS_pair_28 The CBS do 98.5 5.1E-07 1.1E-11 65.2 6.7 51 87-139 69-119 (120)
127 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 3.5E-07 7.5E-12 64.5 5.5 57 81-139 54-110 (111)
128 cd04640 CBS_pair_27 The CBS do 98.5 2.6E-07 5.6E-12 67.6 4.9 57 81-139 62-125 (126)
129 PRK07107 inosine 5-monophospha 98.5 4.6E-07 1E-11 82.3 7.4 62 80-141 158-219 (502)
130 cd04601 CBS_pair_IMPDH This cd 98.5 6.4E-07 1.4E-11 63.1 6.6 56 82-139 53-109 (110)
131 cd04621 CBS_pair_8 The CBS dom 98.4 3.7E-07 7.9E-12 68.2 5.6 55 82-139 80-134 (135)
132 cd04631 CBS_pair_18 The CBS do 98.4 5.5E-07 1.2E-11 65.1 6.4 56 82-139 69-124 (125)
133 PRK07807 inosine 5-monophospha 98.4 5.1E-07 1.1E-11 81.5 7.1 59 82-142 147-205 (479)
134 TIGR01303 IMP_DH_rel_1 IMP deh 98.4 5.4E-07 1.2E-11 81.3 7.1 72 69-142 132-203 (475)
135 cd04595 CBS_pair_DHH_polyA_Pol 98.4 7.8E-07 1.7E-11 63.0 6.6 56 81-139 54-109 (110)
136 cd04602 CBS_pair_IMPDH_2 This 98.4 6.3E-07 1.4E-11 64.2 6.0 55 83-139 57-113 (114)
137 PRK10892 D-arabinose 5-phospha 98.4 3.5E-07 7.6E-12 78.2 5.5 58 81-141 267-324 (326)
138 cd04622 CBS_pair_9 The CBS dom 98.4 8.1E-07 1.8E-11 62.9 6.4 54 84-139 59-112 (113)
139 cd04623 CBS_pair_10 The CBS do 98.4 9.5E-07 2E-11 62.4 6.6 55 82-139 58-112 (113)
140 cd04629 CBS_pair_16 The CBS do 98.4 7E-07 1.5E-11 63.4 5.9 55 82-139 59-113 (114)
141 cd04636 CBS_pair_23 The CBS do 98.4 5.8E-07 1.3E-11 66.1 5.6 53 84-139 79-131 (132)
142 cd04800 CBS_pair_CAP-ED_DUF294 98.4 9.6E-07 2.1E-11 62.5 6.5 55 82-139 56-110 (111)
143 cd04643 CBS_pair_30 The CBS do 98.4 8E-07 1.7E-11 63.3 5.8 54 82-139 62-115 (116)
144 cd04588 CBS_pair_CAP-ED_DUF294 98.4 1.2E-06 2.6E-11 61.9 6.5 55 83-139 55-109 (110)
145 cd04642 CBS_pair_29 The CBS do 98.4 1.4E-06 3E-11 63.5 6.9 51 87-139 75-125 (126)
146 cd04637 CBS_pair_24 The CBS do 98.3 1.3E-06 2.9E-11 62.9 6.3 55 83-139 67-121 (122)
147 cd04589 CBS_pair_CAP-ED_DUF294 98.3 1.7E-06 3.7E-11 61.3 6.7 56 81-139 55-110 (111)
148 cd04633 CBS_pair_20 The CBS do 98.3 9.9E-07 2.1E-11 63.4 5.5 56 81-139 65-120 (121)
149 cd04605 CBS_pair_MET2_assoc Th 98.3 1.6E-06 3.6E-11 61.2 6.5 54 84-139 56-109 (110)
150 cd04614 CBS_pair_1 The CBS dom 98.3 1.8E-06 3.8E-11 60.6 6.5 55 84-139 41-95 (96)
151 cd04594 CBS_pair_EriC_assoc_ar 98.3 1.7E-06 3.6E-11 61.0 6.3 53 84-139 51-103 (104)
152 cd04608 CBS_pair_PALP_assoc Th 98.3 2.3E-07 5E-12 68.2 1.8 59 80-140 56-123 (124)
153 cd04802 CBS_pair_3 The CBS dom 98.3 2.1E-06 4.6E-11 60.8 6.7 56 81-139 56-111 (112)
154 COG4109 Predicted transcriptio 98.3 1.1E-06 2.4E-11 75.8 6.1 87 49-142 220-306 (432)
155 smart00116 CBS Domain in cysta 98.3 2.6E-06 5.6E-11 50.5 6.0 47 95-141 2-48 (49)
156 cd04592 CBS_pair_EriC_assoc_eu 98.3 2.4E-06 5.2E-11 64.1 6.9 49 94-142 2-50 (133)
157 PRK15094 magnesium/cobalt effl 98.3 2.6E-06 5.7E-11 72.4 8.0 92 83-177 133-228 (292)
158 COG0517 FOG: CBS domain [Gener 98.3 2.2E-06 4.7E-11 61.0 6.3 53 84-138 63-117 (117)
159 KOG1764 5'-AMP-activated prote 98.3 3.4E-06 7.4E-11 74.2 8.7 85 94-178 238-360 (381)
160 cd04590 CBS_pair_CorC_HlyC_ass 98.3 2.2E-06 4.7E-11 60.6 6.1 54 83-139 57-110 (111)
161 COG3448 CBS-domain-containing 98.3 1.3E-06 2.8E-11 74.0 5.3 89 51-141 277-371 (382)
162 PRK14869 putative manganese-de 98.3 1.8E-06 3.9E-11 78.9 6.6 59 81-141 244-303 (546)
163 PLN02274 inosine-5'-monophosph 98.3 2.1E-06 4.6E-11 78.0 6.8 62 81-142 161-222 (505)
164 cd04632 CBS_pair_19 The CBS do 98.2 2.7E-06 5.9E-11 61.9 6.1 56 82-139 70-127 (128)
165 cd04584 CBS_pair_ACT_assoc Thi 98.2 3.3E-06 7.1E-11 60.5 6.4 56 81-139 65-120 (121)
166 cd04638 CBS_pair_25 The CBS do 98.2 3.7E-06 8E-11 59.1 6.2 54 83-139 52-105 (106)
167 PRK01862 putative voltage-gate 98.2 1.6E-06 3.5E-11 79.7 4.9 58 82-141 511-570 (574)
168 PTZ00314 inosine-5'-monophosph 98.2 4.7E-06 1E-10 75.6 7.6 61 81-141 157-217 (495)
169 cd04591 CBS_pair_EriC_assoc_eu 98.2 5.1E-06 1.1E-10 59.1 6.3 49 88-139 56-104 (105)
170 TIGR03520 GldE gliding motilit 98.1 1.2E-05 2.7E-10 71.2 9.2 107 68-177 238-349 (408)
171 cd04598 CBS_pair_GGDEF_assoc T 98.1 6.4E-06 1.4E-10 58.9 5.9 56 82-139 60-118 (119)
172 cd02205 CBS_pair The CBS domai 98.1 8.5E-06 1.8E-10 56.5 6.2 53 85-139 60-112 (113)
173 COG2239 MgtE Mg/Co/Ni transpor 98.1 2.6E-06 5.6E-11 76.4 4.3 74 68-143 181-254 (451)
174 PRK10070 glycine betaine trans 98.1 2.3E-05 5.1E-10 69.4 10.2 99 83-181 274-397 (400)
175 TIGR00393 kpsF KpsF/GutQ famil 98.1 3.4E-06 7.4E-11 69.8 4.6 51 81-133 218-268 (268)
176 cd04609 CBS_pair_PALP_assoc2 T 98.1 8.4E-06 1.8E-10 57.2 5.7 53 83-139 57-109 (110)
177 TIGR01302 IMP_dehydrog inosine 98.1 1.2E-05 2.5E-10 72.2 7.6 58 82-141 142-200 (450)
178 cd04634 CBS_pair_21 The CBS do 98.1 1.3E-05 2.7E-10 60.1 6.6 55 82-139 88-142 (143)
179 TIGR01186 proV glycine betaine 98.0 5.7E-05 1.2E-09 66.1 10.5 85 94-179 251-360 (363)
180 PRK05567 inosine 5'-monophosph 98.0 2.7E-05 5.9E-10 70.5 8.3 58 82-141 146-204 (486)
181 COG2905 Predicted signal-trans 97.9 2.6E-05 5.7E-10 70.9 6.7 62 78-142 209-270 (610)
182 PRK11573 hypothetical protein; 97.7 0.00021 4.6E-09 63.5 9.4 90 85-177 257-350 (413)
183 KOG2550 IMP dehydrogenase/GMP 97.7 4.3E-05 9.4E-10 67.3 4.7 83 94-176 117-227 (503)
184 TIGR01186 proV glycine betaine 97.5 0.00019 4.1E-09 62.8 6.2 56 84-142 303-358 (363)
185 COG1253 TlyC Hemolysins and re 97.4 0.001 2.3E-08 59.3 9.2 85 94-178 280-368 (429)
186 TIGR01137 cysta_beta cystathio 97.4 0.00029 6.4E-09 62.8 5.2 55 82-141 399-453 (454)
187 COG3620 Predicted transcriptio 97.2 0.00053 1.2E-08 53.5 4.9 58 80-142 127-184 (187)
188 PRK10070 glycine betaine trans 97.2 0.00067 1.5E-08 60.2 6.2 60 83-145 337-396 (400)
189 KOG1764 5'-AMP-activated prote 97.1 0.0011 2.4E-08 58.5 6.3 51 93-143 310-360 (381)
190 KOG2550 IMP dehydrogenase/GMP 97.1 0.0007 1.5E-08 59.8 4.4 71 69-141 156-227 (503)
191 KOG0474 Cl- channel CLC-7 and 97.0 0.00053 1.1E-08 63.3 3.4 65 74-140 573-642 (762)
192 COG4536 CorB Putative Mg2+ and 96.6 0.0062 1.3E-07 53.4 6.5 94 83-176 265-361 (423)
193 cd04592 CBS_pair_EriC_assoc_eu 96.3 0.0052 1.1E-07 45.9 3.9 32 94-125 87-118 (133)
194 KOG0475 Cl- channel CLC-3 and 96.2 0.017 3.8E-07 53.5 7.3 45 95-139 558-605 (696)
195 KOG0474 Cl- channel CLC-7 and 96.1 0.0093 2E-07 55.4 5.2 57 83-141 690-746 (762)
196 COG4175 ProV ABC-type proline/ 96.0 0.0086 1.9E-07 51.8 4.2 99 81-179 272-385 (386)
197 PF00571 CBS: CBS domain CBS d 95.9 0.01 2.2E-07 37.1 3.2 31 147-177 26-56 (57)
198 TIGR03415 ABC_choXWV_ATP choli 95.1 0.049 1.1E-06 48.1 5.7 53 84-141 327-379 (382)
199 COG4535 CorC Putative Mg2+ and 94.3 0.13 2.7E-06 42.9 5.9 108 68-178 114-229 (293)
200 KOG0475 Cl- channel CLC-3 and 94.1 0.12 2.7E-06 48.1 6.1 58 81-141 637-694 (696)
201 TIGR03415 ABC_choXWV_ATP choli 92.7 0.26 5.6E-06 43.6 5.6 86 80-178 271-381 (382)
202 COG4175 ProV ABC-type proline/ 91.7 0.33 7.1E-06 42.3 4.9 52 88-142 332-383 (386)
203 KOG0476 Cl- channel CLC-2 and 91.5 0.19 4.1E-06 47.9 3.5 60 81-142 586-647 (931)
204 COG1125 OpuBA ABC-type proline 91.5 0.41 9E-06 40.5 5.2 36 104-139 272-307 (309)
205 smart00116 CBS Domain in cysta 90.3 0.34 7.3E-06 27.6 2.7 28 149-176 21-48 (49)
206 KOG0476 Cl- channel CLC-2 and 86.5 1.7 3.8E-05 41.6 6.0 76 66-143 784-859 (931)
207 cd04597 CBS_pair_DRTGG_assoc2 84.2 1 2.3E-05 32.0 2.8 27 148-174 86-112 (113)
208 COG1125 OpuBA ABC-type proline 82.2 3.2 6.9E-05 35.3 5.2 69 101-175 193-308 (309)
209 PF12396 DUF3659: Protein of u 75.2 11 0.00023 25.0 5.1 44 121-169 15-58 (64)
210 PF02743 Cache_1: Cache domain 73.1 17 0.00036 24.0 5.9 47 118-166 18-68 (81)
211 PF05198 IF3_N: Translation in 58.3 18 0.00038 24.6 3.6 30 116-145 12-41 (76)
212 PRK11388 DNA-binding transcrip 58.1 32 0.0007 32.1 6.6 82 84-168 42-162 (638)
213 PF14827 Cache_3: Sensory doma 54.8 14 0.00031 26.5 2.9 19 117-135 92-110 (116)
214 KOG2118 Predicted membrane pro 53.0 13 0.00029 34.1 3.0 47 79-125 200-247 (498)
215 PF13365 Trypsin_2: Trypsin-li 50.4 13 0.00029 25.7 2.1 20 112-131 101-120 (120)
216 PF14044 NETI: NETI protein 47.4 25 0.00053 22.7 2.7 24 97-122 3-26 (57)
217 COG2216 KdpB High-affinity K+ 45.0 35 0.00076 31.9 4.3 39 101-140 412-450 (681)
218 PF04459 DUF512: Protein of un 44.0 52 0.0011 26.6 4.9 64 115-180 126-196 (204)
219 PRK15393 NUDIX hydrolase YfcD; 35.6 86 0.0019 24.3 4.8 43 117-164 10-52 (180)
220 TIGR03278 methan_mark_10 putat 33.8 47 0.001 29.7 3.4 20 116-138 306-325 (404)
221 smart00594 UAS UAS domain. 32.9 29 0.00064 25.1 1.7 44 81-126 51-97 (122)
222 PRK12686 carbamate kinase; Rev 31.8 59 0.0013 28.1 3.6 73 105-177 173-262 (312)
223 cd02958 UAS UAS family; UAS is 30.6 32 0.00068 24.3 1.5 57 82-140 42-106 (114)
224 COG0290 InfC Translation initi 30.6 95 0.0021 24.6 4.2 31 115-145 17-47 (176)
225 TIGR02150 IPP_isom_1 isopenten 30.6 85 0.0018 23.7 4.0 20 119-138 1-20 (158)
226 PRK12454 carbamate kinase-like 30.2 91 0.002 27.0 4.4 73 105-177 175-264 (313)
227 PF13673 Acetyltransf_10: Acet 30.0 1.1E+02 0.0023 20.8 4.2 27 109-135 36-62 (117)
228 PF00944 Peptidase_S3: Alphavi 29.2 50 0.0011 25.3 2.3 20 114-133 105-124 (158)
229 PF13596 PAS_10: PAS domain; P 28.4 48 0.001 22.8 2.1 17 116-132 83-99 (106)
230 PF03948 Ribosomal_L9_C: Ribos 27.7 39 0.00085 23.3 1.5 20 159-178 24-43 (87)
231 PHA00673 acetyltransferase dom 26.6 1.4E+02 0.0031 23.0 4.6 36 102-137 40-75 (154)
232 PF08275 Toprim_N: DNA primase 25.5 66 0.0014 23.7 2.5 18 118-135 80-97 (128)
233 PRK00028 infC translation init 25.5 57 0.0012 25.7 2.2 25 117-141 20-44 (177)
234 CHL00199 infC translation init 24.3 63 0.0014 25.8 2.2 29 116-144 24-52 (182)
235 TIGR00168 infC translation ini 24.0 56 0.0012 25.5 1.9 28 117-144 8-35 (165)
236 TIGR02038 protease_degS peripl 23.9 61 0.0013 28.1 2.3 21 114-134 197-217 (351)
237 PRK10638 glutaredoxin 3; Provi 23.1 1.8E+02 0.0039 19.1 4.1 19 112-130 46-64 (83)
238 PLN02552 isopentenyl-diphospha 23.0 1.8E+02 0.0039 24.2 4.8 22 117-138 23-44 (247)
239 PF10049 DUF2283: Protein of u 22.3 63 0.0014 19.8 1.6 14 119-132 32-45 (50)
240 TIGR00158 L9 ribosomal protein 21.6 1.1E+02 0.0024 23.4 3.0 19 123-141 84-102 (148)
241 PRK10898 serine endoprotease; 21.3 74 0.0016 27.7 2.3 22 113-134 196-217 (353)
242 smart00481 POLIIIAc DNA polyme 20.7 1.3E+02 0.0029 18.9 2.9 40 99-139 12-51 (67)
No 1
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-13 Score=116.19 Aligned_cols=102 Identities=29% Similarity=0.472 Sum_probs=89.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------
Q 030127 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------ 144 (182)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------ 144 (182)
.......++.|||++ +++++.+++++.+|..+|.+++++.+||+|++.+++|||+.+|+.+.....
T Consensus 239 ~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~ 316 (382)
T COG3448 239 RRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPT 316 (382)
T ss_pred HHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCc
Confidence 445677899999999 999999999999999999999999999999999999999999998722110
Q ss_pred --C---------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhcc
Q 030127 145 --G---------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW 180 (182)
Q Consensus 145 --~---------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~ 180 (182)
+ +.+.+...+||+|++|+++|+|++.|++.++.+.|
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHHH
Confidence 0 45678888999999999999999999999987755
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.40 E-value=2.3e-12 Score=113.83 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-----------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG----------- 145 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~----------- 145 (182)
..+.+++|+|+|+++.++.+++.+++++++++.|.+++++++||++++ ++++|+|+.+|++.......
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~~~~~ 265 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLREPY 265 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHHcCCCe
Confidence 466788999999998889999999999999999999999999999865 79999999999985322110
Q ss_pred --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|...+..+++|+|+.|.+.|+||.+|+++.+-+
T Consensus 266 ~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 266 FVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred EeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhC
Confidence 556788899999999999999999999999854
No 3
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.38 E-value=3.8e-12 Score=107.96 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=87.7
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC--C---------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS--G--------- 145 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~--~--------- 145 (182)
..+...+|+++|+++.++.++.++++++++++.+.+++++++||++++ ++++|+|+.+|++...... .
T Consensus 62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~ 141 (292)
T PRK15094 62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ 141 (292)
T ss_pred hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence 466778999999997779999999999999999999999999999876 7999999999997532110 0
Q ss_pred ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127 146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW 179 (182)
Q Consensus 146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~ 179 (182)
|...+..+++|+|+.|.++|+||.+|+++.+.+.
T Consensus 142 ~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 142 AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 4467788999999999999999999999998653
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.37 E-value=2.6e-12 Score=105.94 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=85.6
Q ss_pred CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------
Q 030127 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------- 145 (182)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------- 145 (182)
.....+|.++|++ ++.++.+++++++|..+|.+++++..||+|+ ++++|++|..|+..+.....
T Consensus 168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~v 244 (294)
T COG2524 168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNV 244 (294)
T ss_pred ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCC
Confidence 3456799999999 9999999999999999999999999999995 59999999999987655421
Q ss_pred ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|..++...+.|+|.+++.+|++|++|+++.++.
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 557788889999999999999999999998864
No 5
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.34 E-value=3.5e-12 Score=109.22 Aligned_cols=101 Identities=26% Similarity=0.344 Sum_probs=89.7
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------ 145 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------ 145 (182)
.+.+-..|+|+|+|.++..++.+++++++..++..+.++++|||+|+..+++|+||.+|+........
T Consensus 183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~ieKVMtknp~tv 262 (432)
T COG4109 183 IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEKVMTKNPITV 262 (432)
T ss_pred hhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCccHHHHhccCCeee
Confidence 35566799999998879999999999999999999999999999999999999999999987544321
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|-.++..++||++++.+++|+||+.|+++.+..
T Consensus 263 ~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 263 RAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred cccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 557899999999999999999999999998853
No 6
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=2.6e-11 Score=85.55 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=70.0
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----C---------CCccCCCceeEeecCC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----S---------GSGRADNSMFPEVDST 160 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~---------~~~~~~~~~~pVvd~~ 160 (182)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+...... . .|.+.+...+||++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~ 81 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQIPIINGN 81 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCeeeEECCC
Confidence 67889999999999999999999999999988999999999999864311 1 1557777889999988
Q ss_pred CcEEEEEeHHHHHH
Q 030127 161 WKVHSTRCRSCLVK 174 (182)
Q Consensus 161 ~k~~GiVt~~dil~ 174 (182)
++++|++++.++++
T Consensus 82 ~~~~Giit~~di~~ 95 (96)
T cd04614 82 DKLIGLLRDHDLLK 95 (96)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999875
No 7
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=3.5e-11 Score=85.47 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=70.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc----cC---------CCccCCCceeEeecC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS----IS---------GSGRADNSMFPEVDS 159 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~----~~---------~~~~~~~~~~pVvd~ 159 (182)
++.++.+++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+... .. .|.+.+...+||+++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 81 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILRLVSIHPERSLFDAALLLLKNKIHRLPVIDP 81 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhheeeEEeCCCCcHHHHHHHHHHCCCCEeeEEEC
Confidence 57899999999999999999999999999975 89999999999986431 11 155788899999998
Q ss_pred C-CcEEEEEeHHHHHH
Q 030127 160 T-WKVHSTRCRSCLVK 174 (182)
Q Consensus 160 ~-~k~~GiVt~~dil~ 174 (182)
+ ++++|+++..|+++
T Consensus 82 ~~~~~~giit~~d~~~ 97 (98)
T cd04618 82 STGTGLYILTSRRILK 97 (98)
T ss_pred CCCCceEEeehhhhhc
Confidence 7 99999999999875
No 8
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.27 E-value=1.4e-11 Score=95.21 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=76.9
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------------- 145 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------------- 145 (182)
..+++..+|+. +++.+.+++++.+++++|.+++++++||+++ |+++|-||..++.++.....
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~ 139 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEP 139 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCC
Confidence 55788999999 9999999999999999999999999999995 99999999999987653221
Q ss_pred Cc--------------cCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 SG--------------RADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ~~--------------~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|. ......+.|+ ++|+++|+||+.|+++.+.+
T Consensus 140 fP~Vs~~~~l~vI~~LL~~~~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 140 FPTVSPDESLNVISQLLEEHPAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred CCcCCCCCCHHHHHHHHhhCCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 11 1122233344 78999999999999998765
No 9
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=2.5e-11 Score=103.31 Aligned_cols=92 Identities=20% Similarity=0.146 Sum_probs=79.1
Q ss_pred ccccccccccCCC--eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---C----------C-
Q 030127 82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---S----------G- 145 (182)
Q Consensus 82 ~~~V~diM~~~~~--~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---~----------~- 145 (182)
..+|+++|.+ + +.++++++++.+|++.|.+.+...+||+|++|+++|+|+.+|+.+.... . .
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 5789999999 7 9999999999999999999999999999999999999999997653211 0 0
Q ss_pred ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127 146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP 175 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~ 175 (182)
|...+...+||+|++++++|+|++.|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 446778889999988999999999999864
No 10
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.25 E-value=1.9e-11 Score=78.15 Aligned_cols=55 Identities=45% Similarity=0.685 Sum_probs=52.2
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
|+++|++ ++.++++++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999 999999999999999999999999999999999999999999998764
No 11
>PRK11573 hypothetical protein; Provisional
Probab=99.25 E-value=5.5e-11 Score=105.31 Aligned_cols=102 Identities=12% Similarity=0.028 Sum_probs=88.1
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhcccc------C------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSI------S------ 144 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~------~------ 144 (182)
..+.+.+|+++|+|+.++.+++.+++++++++.+.+++++++||++++ ++++|+|..+|++..... .
T Consensus 182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~ 261 (413)
T PRK11573 182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA 261 (413)
T ss_pred hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence 467788999999999999999999999999999999999999999765 899999999999753211 0
Q ss_pred -C----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127 145 -G----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW 179 (182)
Q Consensus 145 -~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~ 179 (182)
. |...+..+..|+|+.|...|+||.+|+++.+-+.
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCC
Confidence 0 5567778888999999999999999999987653
No 12
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=8e-11 Score=85.40 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=68.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------------------------C
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------------------------G 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------------------------~ 145 (182)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++...... .
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 678999999999999999999999999999889999999999987522100 0
Q ss_pred ---------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
|...+...+||++++++++|++|+.++++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 33567778999998899999999999875
No 13
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.6e-10 Score=83.00 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=68.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----CC------------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SG------------------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~~------------------------ 145 (182)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+|+..|+.+.... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al~~ 81 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRI 81 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHHHH
Confidence 57889999999999999999999999999988999999999998753211 00
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
|...+...+||+|+++++.|++|..|+++
T Consensus 82 m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 82 FRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 44667778999998899999999999875
No 14
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.18 E-value=9.1e-11 Score=107.62 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=82.6
Q ss_pred CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc---c---CC-------
Q 030127 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS---I---SG------- 145 (182)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~---~---~~------- 145 (182)
....++|+|+|++ ++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+... . ..
T Consensus 443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~ 520 (574)
T PRK01862 443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT 520 (574)
T ss_pred HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence 3467899999998 8899999999999999999999999999999999999999999876211 0 00
Q ss_pred -----------------CccCCCceeEeecCC--CcEEEEEeHHHHHHHhhh
Q 030127 146 -----------------SGRADNSMFPEVDST--WKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 -----------------~~~~~~~~~pVvd~~--~k~~GiVt~~dil~~l~~ 178 (182)
+.+.+...+||+|++ ++++|+|++.|+++.+.+
T Consensus 521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 345667789999876 479999999999999865
No 15
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=2e-10 Score=82.74 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=68.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------CC---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------SG--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------~~--------------------- 145 (182)
.+.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+.+.... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHH
Confidence 36789999999999999999999999999989999999999998753211 00
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 82 ~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 34667778999998899999999999875
No 16
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=102.32 Aligned_cols=104 Identities=22% Similarity=0.174 Sum_probs=90.2
Q ss_pred CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEee-CCCcEEEEEeHHHHHhccccC---C-------
Q 030127 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSIS---G------- 145 (182)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD-~~g~lvGiVt~~Dll~~~~~~---~------- 145 (182)
...+.+.+|+++|+|+.++.+++.+.+++++.+.+.+++++++||++ +.+.++|++..+|++...... .
T Consensus 200 v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~ 279 (429)
T COG1253 200 VLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVR 279 (429)
T ss_pred HhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhccc
Confidence 35678889999999999999999999999999999999999999999 448999999999998643322 1
Q ss_pred -----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhcc
Q 030127 146 -----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWW 180 (182)
Q Consensus 146 -----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~ 180 (182)
|...+..+..|+|+.|.+.|+||.+|+++.+.+.+
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei 331 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI 331 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence 44667788889999999999999999999987643
No 17
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.17 E-value=2e-10 Score=103.38 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=81.9
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------- 144 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------- 144 (182)
...+++.++|.+ ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.......
T Consensus 86 l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~~V~diMt~~~itV~~ 163 (479)
T PRK07807 86 VAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFTQVRDVMSTDLVTLPA 163 (479)
T ss_pred Hhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCCCHHHhccCCceEECC
Confidence 456788999999 999999999999999999999999999999889999999999986532110
Q ss_pred ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
.|...+...+||+|++++++|+||+.|+++...
T Consensus 164 d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 164 GTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 144667778999998899999999999998654
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.16 E-value=2.4e-10 Score=84.23 Aligned_cols=83 Identities=28% Similarity=0.220 Sum_probs=66.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G---------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~---------------------- 145 (182)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++...... .
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHHH
Confidence 688999999999999999999999999999889999999999998522110 0
Q ss_pred --C---------ccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 146 --S---------GRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 146 --~---------~~~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
+ .......+||++++++++|+||+.|+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 0 111334456778789999999999998763
No 19
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=3e-10 Score=80.80 Aligned_cols=82 Identities=28% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------Ccc
Q 030127 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGR 148 (182)
Q Consensus 93 ~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~ 148 (182)
+++.++.++++++++++.|.+++.+.+||+|++|+++|+|+.+|++....... +..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~ 81 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDPDTTIEKVMTKNPITVNPKTSVASVAHMMIW 81 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccccccHHHHhcCCCeEECCCCCHHHHHHHHHH
Confidence 36889999999999999999999999999998899999999999875422110 335
Q ss_pred CCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 149 ADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 149 ~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
.+...+||++++++++|+++..++++
T Consensus 82 ~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 82 EGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 66788999998999999999999875
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.15 E-value=3.4e-10 Score=81.26 Aligned_cols=82 Identities=26% Similarity=0.236 Sum_probs=68.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G-------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~-------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+....... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence 577899999999999999999999999999889999999999987532110 0
Q ss_pred --CccCCCceeEeecCC--CcEEEEEeHHHHHHH
Q 030127 146 --SGRADNSMFPEVDST--WKVHSTRCRSCLVKP 175 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~--~k~~GiVt~~dil~~ 175 (182)
+...+...+||++++ ++++|+|++.+++++
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 345677789999887 799999999999863
No 21
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.15 E-value=2.2e-10 Score=97.94 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=77.7
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C---------
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G--------- 145 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~--------- 145 (182)
..++|+++|++..++.++++++++.+|++.|.+++++.+||+|++|+++|+||.+|+.+..... .
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~ 279 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGG 279 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence 6678999998533689999999999999999999988888889889999999999987543211 0
Q ss_pred ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127 146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP 175 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~ 175 (182)
|...+...+||++ +++++|+|++.|+++.
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 4466778889997 5799999999999875
No 22
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.14 E-value=5.4e-10 Score=78.80 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=68.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----------------------CCccCC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----------------------GSGRAD 150 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----------------------~~~~~~ 150 (182)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|++...... .+.+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCGDHAEPFKVTVSVDDDLRIVLSRMFAHD 81 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchhhhcccCCEEECCCCCHHHHHHHHHHCC
Confidence 578899999999999999999999999999889999999999988643211 044567
Q ss_pred CceeEeecCCCcEEEEEeHHHHHH
Q 030127 151 NSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 151 ~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
...+||++++++++|++++.++++
T Consensus 82 ~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 82 MSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred CCeeeEECCCCcEEEEEEHHHhhc
Confidence 777899998899999999999875
No 23
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.12 E-value=6.3e-10 Score=78.58 Aligned_cols=81 Identities=27% Similarity=0.337 Sum_probs=68.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------------------Ccc
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------------------SGR 148 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------------------~~~ 148 (182)
++.++.+++++.++++.|.+.++..+||+|++|+++|+++.+|+........ +..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 82 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEAKSLEDIMLEDVFTVQPDASLRDVLGLVLK 82 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcCCcHhHhhcCCceEECCCCcHHHHHHHHHH
Confidence 6788999999999999999999999999998899999999999875421100 334
Q ss_pred CCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 149 ADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 149 ~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
.+...+||++++++++|+++++++++
T Consensus 83 ~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 83 RGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceeeEECCCCeEEEEEehHHhhc
Confidence 56678999998899999999999875
No 24
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.12 E-value=6.4e-10 Score=79.06 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=68.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC----C-----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS----G----------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~----~----------------------- 145 (182)
++.++++++++.++++.|.+.+++.+||+|++ |+++|+++.+|+++..... .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLLRPPLFVPESTPLDDLLEE 81 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHHhcCCeecCCCCcHHHHHHH
Confidence 57889999999999999999999999999988 9999999999987543211 0
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 82 MRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 34567788999998899999999999875
No 25
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=9.3e-10 Score=78.09 Aligned_cols=81 Identities=25% Similarity=0.424 Sum_probs=67.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------C----------------Cc
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------G----------------SG 147 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------~----------------~~ 147 (182)
++..+.+++++.++++.|.++++..+||+|++|+++|+++.+|+++..... . +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~ 82 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARKME 82 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHHHH
Confidence 678899999999999999999999999999889999999999997432110 0 33
Q ss_pred cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 148 RADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 148 ~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
..+...+||++++++++|++++.++++
T Consensus 83 ~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 83 RHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 455578899998899999999999864
No 26
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=8.1e-10 Score=78.65 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=67.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C---------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G--------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~--------------- 145 (182)
++.++++++++.++++.|.+.++..+||+|++|+++|+++.+|+++..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 81 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHHHH
Confidence 578899999999999999999999999999889999999999987542110 0
Q ss_pred -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++++++.|++++.++++
T Consensus 82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 22345567899998899999999999875
No 27
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=8.5e-10 Score=79.90 Aligned_cols=81 Identities=28% Similarity=0.469 Sum_probs=68.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC----------------C------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS----------------G------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~----------------~------------ 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|++...... .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTV 82 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeee
Confidence 688999999999999999999999999999889999999999986432110 0
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.|+++
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 83 RPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred CCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 33556778999998999999999999875
No 28
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.09 E-value=6.9e-10 Score=80.32 Aligned_cols=81 Identities=26% Similarity=0.289 Sum_probs=67.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------CC------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------SG------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~~------------ 145 (182)
++.++.+++++.++++.|.++++..+||+|++|+++|+|+..|+.+.... ..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 57889999999999999999999999999988999999999997753210 01
Q ss_pred ----CccCCCceeEeecCC---CcEEEEEeHHHHHH
Q 030127 146 ----SGRADNSMFPEVDST---WKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ----~~~~~~~~~pVvd~~---~k~~GiVt~~dil~ 174 (182)
|.+.+...+||++++ ++++|+||+.++++
T Consensus 82 ~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 82 AAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 335667789999887 69999999999864
No 29
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=8e-10 Score=78.56 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=67.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------------CC----------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------SG---------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------------~~---------------- 145 (182)
++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.... ..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~ 81 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL 81 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHHHH
Confidence 57889999999999999998889999999988999999999998764211 00
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++.+
T Consensus 82 ~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 82 MQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 33556678999998899999999999875
No 30
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=8.4e-10 Score=79.19 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc------c-CC--------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS------I-SG-------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~------~-~~-------------------- 145 (182)
++.++.+++++.++++.|.+++++.+||+|++ |+++|+++.+|+++... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 67899999999999999999999999999987 89999999999876210 0 00
Q ss_pred ----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ----SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ----~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ ++++|++++.++++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 33556778899987 99999999999875
No 31
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=1e-09 Score=78.41 Aligned_cols=79 Identities=27% Similarity=0.264 Sum_probs=65.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----------CC-----------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----------SG----------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----------~~----------------- 145 (182)
++.++++++++.++++.|.+.+++.+||+|++|+++|+++.+|+++.... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 67889999999999999999999999999988999999999998653210 00
Q ss_pred -------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+.. ...+||++++++++|++|+.++++
T Consensus 82 l~~a~~~~~~--~~~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 82 IEEILHLLID--QPFLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred HHHHHHHHhc--CCceeEEeCCCeEEEEEEHHHhhc
Confidence 222 235899998899999999999875
No 32
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=1.3e-09 Score=77.33 Aligned_cols=80 Identities=29% Similarity=0.384 Sum_probs=65.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------C---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------G--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------~--------------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+++..... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 578899999999999999999999999999889999999999988532110 0
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ ++++|+++..++++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 22445567889887 89999999999875
No 33
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.2e-09 Score=79.58 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=66.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccc-----------------------cCC----
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS-----------------------ISG---- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~-----------------------~~~---- 145 (182)
++.++.+++++.++++.|.++++..+||+|++ |+++|+|+.+|+++... ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 67889999999999999999999999999987 99999999999865210 000
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLV 173 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil 173 (182)
|.+.+...+||++++++++|+||..++-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 4466777899999989999999999874
No 34
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=1.5e-09 Score=77.65 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=67.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----CC-----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----SG----------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----~~----------------------- 145 (182)
++.++.+++++.++++.|.+.+...++|+|++|+++|+++.+|+++.... ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILA 82 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence 46789999999999999999999999999988999999999997643211 00
Q ss_pred -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..+++.
T Consensus 83 ~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 83 LMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 34566778999998899999999999874
No 35
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.07 E-value=1e-09 Score=98.09 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=81.2
Q ss_pred CccccccccccccCCCeEEEcCCCCHHHHHHHHHH-----cCCCEEEEeeCCCcEEEEEeHHHHHhccccCC--------
Q 030127 79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------- 145 (182)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~-----~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------- 145 (182)
.....+++++|++ ++.++++++++.++++.|++ ++...++|+|++++++|+|+.+|++.......
T Consensus 127 ~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~~~v~~im~~~ 204 (449)
T TIGR00400 127 SYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPEEILSSIMRSS 204 (449)
T ss_pred CCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCCCcHHHHhCCC
Confidence 4466789999998 99999999999999999986 45567899998899999999999864321100
Q ss_pred ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
+.+.+...+||+|++++++|+||.+|+++.+.+
T Consensus 205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 445677789999999999999999999988765
No 36
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.06 E-value=1.3e-09 Score=77.76 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=66.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G---------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~---------------------- 145 (182)
++..+.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 367889999999999999999999999999889999999999997532100 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..++++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 33455567899998899999999999875
No 37
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=6.4e-10 Score=79.66 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc--------------CC-------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI--------------SG------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------------~~------------- 145 (182)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+|+.+|++..... ..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV 81 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHHH
Confidence 6788999999999999997765 8899999988999999999998754210 00
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
|...+...+||++++++++|+++..++++
T Consensus 82 ~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 82 LKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 34567778999998899999999998865
No 38
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.3e-09 Score=79.76 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=67.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc------c-----------------CC-----
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------I-----------------SG----- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~------~-----------------~~----- 145 (182)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++... . ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL 81 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCC
Confidence 5788999999999999999999999999998899999999999875321 0 00
Q ss_pred ---------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+.+.+...+||++++++++|+||+.++++
T Consensus 82 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 82 ITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred eEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 33556677899998899999999999875
No 39
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.04 E-value=2.7e-09 Score=75.68 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------------C----------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------------G---------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------------~---------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 80 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL 80 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHHHH
Confidence 6788999999999999999999999999997 9999999999988642110 0
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++++++.|+++..++++
T Consensus 81 ~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 81 MNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 33455668899998899999999999875
No 40
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.04 E-value=2.5e-09 Score=75.74 Aligned_cols=80 Identities=30% Similarity=0.436 Sum_probs=67.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----C-----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----G----------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----~----------------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+.+..... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK 80 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHHHH
Confidence 6788999999999999999999999999997 9999999999988533211 0
Q ss_pred -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++++++.|+++..++++
T Consensus 81 ~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 81 RMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 33556678999998899999999999875
No 41
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.03 E-value=2.1e-09 Score=76.27 Aligned_cols=81 Identities=28% Similarity=0.384 Sum_probs=67.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----C---------C---------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----S---------G--------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~---------~--------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|+.+.... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence 67889999999999999999999999999988999999999999753211 0 0
Q ss_pred --CccCCCceeEeecC-CCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDS-TWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~-~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ .++++|+++..+++.
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 34556667899987 889999999999875
No 42
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.02 E-value=1.6e-09 Score=77.08 Aligned_cols=79 Identities=29% Similarity=0.292 Sum_probs=63.1
Q ss_pred EcCCCCHHHHHHHHHHcC-----CCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------Ccc
Q 030127 98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGR 148 (182)
Q Consensus 98 v~~~~tl~ea~~~m~~~~-----~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~ 148 (182)
+.+++++.++++.|.+++ +..+||+|++|+++|+|+.+++++...... +..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~ 81 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLADPDTPVSDIMDTDVISVSADDDQEEVARLFEK 81 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCCCcchHHHHhCCCCeEEcCCCCHHHHHHHHHH
Confidence 568899999999998877 468999998899999999999875321100 334
Q ss_pred CCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 149 ADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
.+...+||++++++++|+++..++++++
T Consensus 82 ~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 82 YDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred cCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 5556789999889999999999998763
No 43
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=2.4e-09 Score=77.33 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=67.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------------CC---------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------------SG--------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------------~~--------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++.... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 57889999999999999999999999999988999999999998754310 00
Q ss_pred -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 33445567899998899999999999875
No 44
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=2.1e-09 Score=76.52 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=67.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-----C-----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-----G----------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-----~----------------------- 145 (182)
++.++++++++.++++.|.+++++.+||+|++|+++|+++.+|++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHHHH
Confidence 578899999999999999999999999999889999999999987542210 0
Q ss_pred -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
|...+...+||+++ ++++|+++..++++
T Consensus 82 ~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 82 IMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 34566778999987 89999999999875
No 45
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=2.4e-09 Score=77.61 Aligned_cols=81 Identities=28% Similarity=0.352 Sum_probs=67.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccC-----------------C----------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSIS-----------------G---------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~-----------------~---------- 145 (182)
++.++.++.++.++++.|.+.++..+||+|++ |+++|+|+.+|++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI 81 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence 57889999999999999999999999999987 9999999999987432110 0
Q ss_pred --------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+|++.++++
T Consensus 82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 33456667899988899999999999875
No 46
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.01 E-value=2.3e-09 Score=76.28 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=66.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G---------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~---------------------- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++++..... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 82 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEAL 82 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHHH
Confidence 677889999999999999988889999999889999999999887543210 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..++++
T Consensus 83 ~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 83 ELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 23455568899998899999999999975
No 47
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.00 E-value=1.2e-09 Score=97.17 Aligned_cols=93 Identities=26% Similarity=0.219 Sum_probs=75.5
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C--------
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G-------- 145 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~-------- 145 (182)
+..++++++|.+ ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..... .
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~ 409 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSKK 409 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCC
Confidence 566799999998 899999999999999999999999999999889999999999987532110 0
Q ss_pred ----------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 146 ----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 146 ----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
+.. . ..++|+++++++|+||+.|+++.++
T Consensus 410 ~~~v~~~~~l~~a~~~~~~--~-~~~vV~~~g~liGvvt~~dll~~l~ 454 (454)
T TIGR01137 410 FIQIGEGEKLSDLSKFLEK--N-SSAIVTEEGKPIGVVTKIDLLSFLA 454 (454)
T ss_pred CeEECCcCcHHHHHHHHHH--C-CeeEEEECCEEEEEEEHHHHHHhhC
Confidence 111 1 2355666789999999999999874
No 48
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=2.6e-09 Score=77.14 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=67.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc---------------ccC--------C-----
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD---------------SIS--------G----- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~---------------~~~--------~----- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++.. ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 678899999999999999999999999999889999999999987521 000 0
Q ss_pred -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 33556677899998899999999999875
No 49
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.99 E-value=4e-09 Score=75.70 Aligned_cols=81 Identities=31% Similarity=0.433 Sum_probs=66.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc----------------C--C-------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI----------------S--G------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~----------------~--~------- 145 (182)
++.++.+++++.++++.|.+.++..+||+|+ +|+++|+++.+|+...... . .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~l 82 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTPREVLVVAPTGITLEEAN 82 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCCCceEEECCCCCCHHHHH
Confidence 5788999999999999999899999999997 7999999999998631110 0 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+|++.++++
T Consensus 83 ~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 83 EILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 33566678999998899999999999875
No 50
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=1.7e-09 Score=77.10 Aligned_cols=80 Identities=30% Similarity=0.402 Sum_probs=65.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc--------C--------C------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI--------S--------G------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------~--------~------------ 145 (182)
++.++++++++.++++.|.+.+++.+||+|++|+++|+|+..|+++.... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 57889999999999999999899999999988999999999998752110 0 0
Q ss_pred ----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ----SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ----~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ ++++|+++..++++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 33445567889987 89999999999975
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.99 E-value=2.9e-09 Score=95.34 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=78.5
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccC----------C----
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSIS----------G---- 145 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~----------~---- 145 (182)
.+.++.|.+ ++.++.+++++.++++.|.+++++.+||+|++ ++++|+|+.+|++...... .
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~~~V 157 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEVITV 157 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCCEEE
Confidence 466788888 89999999999999999999999999999987 7999999999987432100 0
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
+...+...+||+|+++++.|+||++|+++.+.
T Consensus 158 ~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 158 PEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 33556678999999999999999999998753
No 52
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=2.8e-09 Score=78.91 Aligned_cols=80 Identities=31% Similarity=0.475 Sum_probs=66.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc---------------------------c-CC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS---------------------------I-SG 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~---------------------------~-~~ 145 (182)
++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+.+... . ..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 6788999999999999999999999999998899999999999864311 0 00
Q ss_pred ------------------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++ +|+++|++++.|+++
T Consensus 83 v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 83 VADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 3456667789998 899999999999875
No 53
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.97 E-value=4.9e-09 Score=74.08 Aligned_cols=81 Identities=36% Similarity=0.473 Sum_probs=66.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------C-C---------Cc
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------S-G---------SG 147 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~-~---------~~ 147 (182)
++.++.+++++.++++.|.+.++..+||+|++|+++|+++.+++...... . . +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETDLDKPVSEVMTPENLLTTVEGTSLEEALELLH 82 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecccCCCCHHHhcccCceEEecCCCCHHHHHHHHH
Confidence 67889999999999999999999999999988999999999997532111 0 0 33
Q ss_pred cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 148 RADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 148 ~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
..+...+||++++++++|++++.++++
T Consensus 83 ~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 83 EHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 455667899998899999999999875
No 54
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.97 E-value=4e-09 Score=95.25 Aligned_cols=91 Identities=24% Similarity=0.312 Sum_probs=77.6
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------C---------
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------S--------- 144 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------~--------- 144 (182)
.++++|.+ ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+...... .
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~v~~~~ 165 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVTVPEGT 165 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEEECCCC
Confidence 57889998 99999999999999999999999999999989999999999998632110 0
Q ss_pred -------CCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 145 -------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 145 -------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
.+...+...+||+|+++++.|+||..|+++.+
T Consensus 166 sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 166 TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 03345667899999999999999999999875
No 55
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=4.2e-09 Score=77.64 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=66.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------------------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------------------------------ 143 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------------------------------ 143 (182)
++.++++++++.++++.|.+.+++.+||+|++|+++|+++..|+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 67889999999999999999999999999988999999999998742210
Q ss_pred ----CC----------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 144 ----SG----------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 144 ----~~----------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
.. +.+.+...+||+++ ++++|++++.|+++
T Consensus 82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00 33455667899988 99999999999875
No 56
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.96 E-value=4.6e-09 Score=78.51 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=66.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----------------------------cC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----------------------------IS 144 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----------------------------~~ 144 (182)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++... ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 6788999999999999999999999999998899999999999875321 00
Q ss_pred C------------------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 145 G------------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 145 ~------------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
. +...+...+||+++ ++++|+|++.++++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 0 33455667899987 89999999999876
No 57
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=7.7e-09 Score=75.74 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=65.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc------------ccC-----------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD------------SIS----------------- 144 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~------------~~~----------------- 144 (182)
++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+.... ...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~ 81 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL 81 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence 568899999999999999999999999999889999999999986310 000
Q ss_pred ----C---------CccCCCceeEeecCC-CcEEEEEeHHHHHH
Q 030127 145 ----G---------SGRADNSMFPEVDST-WKVHSTRCRSCLVK 174 (182)
Q Consensus 145 ----~---------~~~~~~~~~pVvd~~-~k~~GiVt~~dil~ 174 (182)
. |...+...+||+|++ ++++|+||..++++
T Consensus 82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 0 224556679999986 79999999999875
No 58
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=7.7e-09 Score=72.58 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=65.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------CccC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGRA 149 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~~ 149 (182)
++.++.+++++.++++.|.+++...+||+| +|+++|+++.+|+........ +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 80 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHPNRLVADAMTREVVTISPEASLLEAKRLMEEK 80 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccccCCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence 578899999999999999999999999998 699999999999875321100 3456
Q ss_pred CCceeEeecCCCcEEEEEeHHHHHH
Q 030127 150 DNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 150 ~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+||+++ +++.|+++..+++.
T Consensus 81 ~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 81 KIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 6777999987 99999999999873
No 59
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=7.7e-09 Score=72.80 Aligned_cols=80 Identities=30% Similarity=0.452 Sum_probs=65.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------------------CccC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------------------SGRA 149 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------------------~~~~ 149 (182)
++.+++.+.++.++++.|.+.+...+||+|+ ++++|+++..|++....... +...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 81 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKDPDETVEEIMSKDLVVAVPEMDIMDAARVMFRT 81 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccCccccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence 6788999999999999999888889999996 99999999999874311100 3345
Q ss_pred CCceeEeecCCCcEEEEEeHHHHHH
Q 030127 150 DNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 150 ~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+||++++++++|+++..++++
T Consensus 82 ~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 82 GISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCeEeEECCCCeEEEEEEHHHhhc
Confidence 6568899999999999999999875
No 60
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.95 E-value=7.4e-09 Score=73.62 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=65.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc-c------ccC--------C-------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL-D------SIS--------G------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~-~------~~~--------~------------- 145 (182)
++.++.+++++.++.+.|.+.+++.+||+|+ |+++|+++.+|++.. . ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHH
Confidence 6788999999999999999999999999997 999999999998621 0 000 0
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..++++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 33445567899988899999999999875
No 61
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.95 E-value=9.1e-09 Score=72.79 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----cCC-----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----ISG----------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----~~~----------------------- 145 (182)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++.+|+++... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHHHH
Confidence 5678999999999999999989999999996 99999999999875431 000
Q ss_pred -CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++++++.|++++.++++
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 22345567899998899999999999875
No 62
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=8.4e-09 Score=73.23 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=65.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----CC------------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SG------------------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~~------------------------ 145 (182)
++.+++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+...... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 81 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHHHH
Confidence 6788999999999999999989999999997 999999999998753311 00
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++ +++++|++++.++++
T Consensus 82 ~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 82 MVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 3355667889998 789999999999875
No 63
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.94 E-value=6.6e-09 Score=93.57 Aligned_cols=95 Identities=22% Similarity=0.258 Sum_probs=79.1
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC---------------
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------- 144 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------- 144 (182)
...+++.++|.+ +++++.+++++.++++.|.+++++.+||+| +++++|+||.+|+.......
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~~~~~V~dIMt~~litv~~ 161 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVDRFTQVRDIMSTDLVTAPA 161 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCCCCCCHHHHccCCceEeCC
Confidence 446788899998 899999999999999999999999999988 57999999999986432110
Q ss_pred ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
.|...+...+||+|++++++|+||..|+++...
T Consensus 162 ~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 162 DTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 034567778899999999999999999998654
No 64
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.93 E-value=7.6e-09 Score=74.02 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=63.4
Q ss_pred CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc------CC---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI------SG--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~------~~--------------------- 145 (182)
++.++.++.++.++++.|.+++ ...++|+| +|+++|+++.+|+++.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 5678999999999999998888 66777777 6999999999998853210 00
Q ss_pred -----CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -----SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -----~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 22334567899998899999999999875
No 65
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.93 E-value=1.2e-08 Score=71.19 Aligned_cols=81 Identities=33% Similarity=0.502 Sum_probs=67.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G-------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~-------------- 145 (182)
++.++.+++++.++++.|.+.+...+||+|++++++|+++.+|+....... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA 81 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHHH
Confidence 567889999999999999999999999999889999999999987533210 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++++++.|+++..++++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 82 ELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 22445678899999999999999999875
No 66
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.93 E-value=9.3e-09 Score=72.98 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=64.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc------CC----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI------SG---------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~------~~---------------------- 145 (182)
++.+++++++++++.+.|.+.+++.+||+|+ |+++|+++.+|++..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 6788999999999999999989999999997 999999999998752110 00
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ +++.|++++.|+++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 33455667889987 89999999999875
No 67
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.93 E-value=1e-08 Score=73.49 Aligned_cols=80 Identities=31% Similarity=0.362 Sum_probs=66.5
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----------------C--------C----
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----------------S--------G---- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----------------~--------~---- 145 (182)
++.++.+++++.++++.|.+.++..+||+|+ |+++|+++.+|++..... . .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEe
Confidence 5788999999999999999999999999997 999999999998754211 0 0
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 33456667899998899999999999976
No 68
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.93 E-value=8.6e-09 Score=72.91 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=63.9
Q ss_pred EEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C---------------CccCCCc
Q 030127 96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G---------------SGRADNS 152 (182)
Q Consensus 96 ~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~---------------~~~~~~~ 152 (182)
.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++..... . +...+..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~ 82 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATYGDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTR 82 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcccchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcc
Confidence 57889999999999999999999999997 9999999999987532110 0 3456667
Q ss_pred eeEeecCCCcEEEEEeHHHHHH
Q 030127 153 MFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 153 ~~pVvd~~~k~~GiVt~~dil~ 174 (182)
.+||++ +++++|+++..++++
T Consensus 83 ~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 83 WCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred eEEEEE-CCEEEEEEEHHHhhc
Confidence 899997 589999999999875
No 69
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.93 E-value=3e-09 Score=88.16 Aligned_cols=85 Identities=33% Similarity=0.343 Sum_probs=71.9
Q ss_pred ccccccccccCCC-eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-----C--------C--
Q 030127 82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-----S--------G-- 145 (182)
Q Consensus 82 ~~~V~diM~~~~~-~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-----~--------~-- 145 (182)
.++|+++|.+ + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+.+|+.+.... . .
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 4699999998 7 9999999999999999999999999999988999999999998754211 0 0
Q ss_pred --------------CccCCCceeEeecCCCcEEEEEe
Q 030127 146 --------------SGRADNSMFPEVDSTWKVHSTRC 168 (182)
Q Consensus 146 --------------~~~~~~~~~pVvd~~~k~~GiVt 168 (182)
+...+...+||++++++++|+|.
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 34566778999998899999984
No 70
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.92 E-value=7.7e-09 Score=73.52 Aligned_cols=80 Identities=29% Similarity=0.283 Sum_probs=64.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-----c--CC---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-----I--SG--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-----~--~~--------------------- 145 (182)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+|+.+|++.... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~ 80 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEA 80 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHH
Confidence 5788999999999999999999999999997 99999999999863110 0 00
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|+++..+++.
T Consensus 81 ~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 81 LHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 22345567889998899999999999875
No 71
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.91 E-value=1.2e-08 Score=71.89 Aligned_cols=78 Identities=29% Similarity=0.360 Sum_probs=63.6
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC------C----------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS------G---------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~------~---------------------- 145 (182)
++.++.+++++.++++.|.+++++.+||+|+ |+++|+++.+|+.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 5788999999999999999999999999997 9999999999987642110 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+.. ....||++++++++|++++.|+++
T Consensus 81 ~~~~~--~~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 81 ELLDR--GNVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHh--CCceeEEecCCeEEEEEeHHHhhc
Confidence 122 234688888899999999999875
No 72
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.90 E-value=6.5e-09 Score=94.20 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=76.0
Q ss_pred cccccccccC-CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc---------------
Q 030127 83 YTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI--------------- 143 (182)
Q Consensus 83 ~~V~diM~~~-~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~--------------- 143 (182)
.+|+++|... .++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||.+|+......
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKL 173 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCe
Confidence 3578888621 15679999999999999999999999999996 5899999999998632100
Q ss_pred ----C---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 144 ----S---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 144 ----~---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
. .|.+.+...+||+|++++++|+||+.|+++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 0 04466778899999999999999999998863
No 73
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.3e-09 Score=89.25 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=86.2
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-------------
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------------- 145 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~------------- 145 (182)
...+.|.|+|.++.+..+++.+.++.+.+..|.+..++++||+.++ +.+.||+-.+||+.......
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPav 143 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPAV 143 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccce
Confidence 3567999999999899999999999999999999999999999655 89999999999998644321
Q ss_pred --------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 --------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 --------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
+......|..|+|+.|.+.|.||.+|+++.+.+
T Consensus 144 ~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 144 VVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 445667789999999999999999999998754
No 74
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.90 E-value=1.5e-08 Score=74.03 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=64.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------------------------CC-
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------------------------SG- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------------------------~~- 145 (182)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+...... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 57789999999999999999999999999988999999999998743100 00
Q ss_pred ---------------CccCCCceeEeec--CCCcEEEEEeHHHHHH
Q 030127 146 ---------------SGRADNSMFPEVD--STWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd--~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++ ++++++|+|+++++++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 2234556677774 4689999999999875
No 75
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.90 E-value=1.5e-08 Score=71.96 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=64.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------------C--------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------------G-------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------------~-------------- 145 (182)
++++++++++++++++.|.+.+...++|+|+ |+++|+++.+|+++..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 5678899999999999999999999999997 8999999999987542110 0
Q ss_pred --CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 --SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 --~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ ++++|+++..++++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 34556677899875 89999999999874
No 76
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.88 E-value=1.5e-08 Score=91.87 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=74.6
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhcccc----------C--------
Q 030127 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSI----------S-------- 144 (182)
Q Consensus 86 ~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~~----------~-------- 144 (182)
+..|.+ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+...... .
T Consensus 103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt~~~~lvtv~~ 180 (505)
T PLN02274 103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPA 180 (505)
T ss_pred cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhccCCCcEEECC
Confidence 344777 8999999999999999999999999999997 4899999999998642110 0
Q ss_pred ---------CCccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 145 ---------GSGRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 145 ---------~~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
.+...+...+||+|++++++|+||+.|+++.+.
T Consensus 181 ~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 181 GIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 034567778999999999999999999998874
No 77
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=1.9e-08 Score=72.62 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=66.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc----------------c--------CC----
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS----------------I--------SG---- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~----------------~--------~~---- 145 (182)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++... . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeee
Confidence 5788999999999999999999999999996 99999999999864210 0 00
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++++++|++++.++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 33556678899998899999999999875
No 78
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.85 E-value=1.3e-08 Score=92.16 Aligned_cols=91 Identities=23% Similarity=0.247 Sum_probs=75.5
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccC-----------C----
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSIS-----------G---- 145 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~-----------~---- 145 (182)
..++.|.. ++.++++++++.+++++|.+++++.+||+|++ ++++|+|+.+|+....... .
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~V~diMt~~~~lvtv 174 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVG 174 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCCHHHhhCCcCCceEe
Confidence 45677888 89999999999999999999999999999974 8999999999985321110 0
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
+...+...+||+|++++++|+||++|+++..
T Consensus 175 ~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 175 NTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 3345667899999999999999999999774
No 79
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.84 E-value=6.9e-09 Score=89.82 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=87.8
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHhccccCC-----------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG----------- 145 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~~~~~~~----------- 145 (182)
..+++++|.|+|.++.++..+..+++.+++++.+.+..+.++||..++ ++++|++..+|++++.....
T Consensus 195 LDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a 274 (423)
T COG4536 195 LDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA 274 (423)
T ss_pred cccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh
Confidence 356788999999999899999999999999999999999999999655 78999999999997654322
Q ss_pred ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|..++.....|||+.|.+.|+||.+|+++.+-+
T Consensus 275 ~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 446666777899999999999999999998754
No 80
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.84 E-value=2.4e-08 Score=71.83 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=65.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-------------c--CC-------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-------------I--SG------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-------------~--~~------------- 145 (182)
++.++++++++.+|++.|.+.+++.+||+|++|+++|+++..|+..... . ..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 5788999999999999999999999999998899999999999875321 0 00
Q ss_pred -----------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 -----------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 -----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||+++ ++++|+++..++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 33455667899987 89999999999875
No 81
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.84 E-value=1.8e-08 Score=71.95 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=66.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC---CCcEEEEEeHHHHHhccc--c-CC----------------CccCCC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDS--I-SG----------------SGRADN 151 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~---~g~lvGiVt~~Dll~~~~--~-~~----------------~~~~~~ 151 (182)
....+.+++++.++.+.|.+.++..+||+|+ +|+++|+|+.+|+..... . .. |...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~~m~~~~~~v~~~~~l~~~~~~~~~~~~ 82 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKNYIDPSPFTVSPRTSLEKVHQLFRKLGL 82 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHHhccCCCceECCCCcHHHHHHHHHHcCC
Confidence 5678899999999999999998889999998 699999999999875331 1 10 446677
Q ss_pred ceeEeecCCCcEEEEEeHHHHHH
Q 030127 152 SMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 152 ~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
..+||+ ++++++|++++.++++
T Consensus 83 ~~~pVv-~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 83 RHLLVV-DEGRLVGIITRKDLLK 104 (105)
T ss_pred CEEEEE-ECCeEEEEEEhhhhhc
Confidence 789999 4789999999999876
No 82
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.82 E-value=4.2e-08 Score=69.23 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=64.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC--------C----------------CccC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--------G----------------SGRA 149 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~--------~----------------~~~~ 149 (182)
++.++.++.+++++++.|.+.+++.+||+|++++++|+++.++++...... . +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 81 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPEEEQLALLMTRDPPTVSPDDDVKEAAKLMVEN 81 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccccchHHHHhcCCCceECCCCCHHHHHHHHHHc
Confidence 578889999999999999998999999999889999999999987432110 0 2345
Q ss_pred CCceeEeecCCCcEEEEEeHHHHHH
Q 030127 150 DNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 150 ~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+||+++ +++.|+++..++++
T Consensus 82 ~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 82 NIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 5567899985 79999999999875
No 83
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.81 E-value=9.5e-09 Score=92.77 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC------------
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG------------ 145 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~------------ 145 (182)
.++-..+|.++|+. ++++|++..++++|.+.|.+.+.+.+.|+|+++...||||.+|+.......+
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT 221 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT 221 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence 34455789999999 9999999999999999999999999999999999999999999986544322
Q ss_pred ------------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ------------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ------------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
|...+...+||. ++|+.+|++|..||+...+.
T Consensus 222 ~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 222 SPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred cCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhCC
Confidence 457788888877 57999999999999998874
No 84
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.80 E-value=1.5e-08 Score=72.64 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=51.5
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.. ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 469999988 8899999999999999999999999999998899999999999975
No 85
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.80 E-value=5e-08 Score=69.26 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=63.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc-------cCC---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS-------ISG--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~-------~~~--------------------- 145 (182)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|++.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHH
Confidence 5788999999999999999999999999995 59999999999876321 000
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++++ +++|++++.++++
T Consensus 81 ~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 81 AKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 234555678999875 9999999999874
No 86
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=4.3e-08 Score=70.55 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=65.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc---------------C-C------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---------------S-G------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~---------------~-~------------ 145 (182)
++.++.+++++.++++.|.+.++..+||+|+ |+++|+++..+++..... . .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEE
Confidence 5788999999999999999999999999996 999999999998753110 0 0
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+.+.+...+||+++ ++++|+++..++++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 33556677899988 89999999999875
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.79 E-value=5.2e-08 Score=69.20 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=62.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc-------CC---------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI-------SG--------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~-------~~--------------------- 145 (182)
++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+++.... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 80 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEV 80 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHH
Confidence 568899999999999999888887777776 5999999999998743211 00
Q ss_pred ---CccCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ---SGRADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ---~~~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+...+||++ +++++|++|+.++++
T Consensus 81 ~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 81 RRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3345667789998 489999999999875
No 88
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.79 E-value=5.9e-08 Score=69.20 Aligned_cols=84 Identities=31% Similarity=0.437 Sum_probs=69.6
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccC-------------C--------
Q 030127 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------------G-------- 145 (182)
Q Consensus 87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~-------------~-------- 145 (182)
++|.+ ++.++.++.++.+|...|.++++..+||++. ++++|++|.+|+..+.... .
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 79 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPDT 79 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEECCCC
Confidence 34445 8999999999999999999999999999984 4899999999998654311 0
Q ss_pred --------Ccc-CCCceeEeecCCC-cEEEEEeHHHHH
Q 030127 146 --------SGR-ADNSMFPEVDSTW-KVHSTRCRSCLV 173 (182)
Q Consensus 146 --------~~~-~~~~~~pVvd~~~-k~~GiVt~~dil 173 (182)
+.. .+...+||+++++ ++.|+++..|++
T Consensus 80 ~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 80 PLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 334 5788999999986 999999999863
No 89
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.77 E-value=3e-08 Score=90.46 Aligned_cols=56 Identities=34% Similarity=0.478 Sum_probs=52.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..+|+++|.+ ++.++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence 3689999998 9999999999999999999999999999998899999999999875
No 90
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.75 E-value=6.9e-08 Score=69.29 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=62.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHcC-CCEEEEeeCCCcEEEEEeHHHHHhcccc--------C-C------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALDSI--------S-G------------------ 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~-~~~lPVvD~~g~lvGiVt~~Dll~~~~~--------~-~------------------ 145 (182)
++.++++++++.++++.|.+.+ ++.+||+|+ |+++|+++.+|++..... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCH
Confidence 5678899999999999998887 889999998 999999999998743210 0 0
Q ss_pred ------CccCCC---ceeEeecCCCcEEEEEeHHHHHH
Q 030127 146 ------SGRADN---SMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 146 ------~~~~~~---~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
+...+. ...++++++++++|+|+..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 222221 23467888899999999999875
No 91
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.75 E-value=3.7e-08 Score=88.08 Aligned_cols=97 Identities=29% Similarity=0.283 Sum_probs=81.9
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHc-----CCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISG--------- 145 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~-----~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------- 145 (182)
...-+++.+|+. ++++++++.|+.++++.+++. .+..+.|+|++++++|+++.++++.......
T Consensus 129 y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~~~~i~~im~~~~ 206 (451)
T COG2239 129 YPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEPDELLKDLMEDDV 206 (451)
T ss_pred CChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCcHhHHHHHhcccc
Confidence 345589999999 999999999999999999854 3577899999999999999999984332210
Q ss_pred ---------------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ---------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ---------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
+.+++....||||++++++|++|..|+++.+..
T Consensus 207 ~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 207 VSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred eeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 557788889999999999999999999987754
No 92
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.73 E-value=3.6e-08 Score=70.79 Aligned_cols=57 Identities=18% Similarity=0.413 Sum_probs=52.8
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...+++++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 34679999988 8999999999999999999999999999998899999999999875
No 93
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=2.5e-08 Score=71.24 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=51.7
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 3578999988 8899999999999999999999999999998899999999999874
No 94
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=4.1e-08 Score=71.35 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=51.8
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.+++++|.+ ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999998 8999999999999999999999999999998899999999999864
No 95
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.69 E-value=1.1e-07 Score=71.33 Aligned_cols=45 Identities=38% Similarity=0.606 Sum_probs=41.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++.+|+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~ 46 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILK 46 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHH
Confidence 6788999999999999999999999999997 99999999999874
No 96
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.66 E-value=6.3e-08 Score=68.67 Aligned_cols=56 Identities=32% Similarity=0.496 Sum_probs=52.2
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..+++++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 4579999988 8999999999999999999999999999998899999999999875
No 97
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=8.4e-08 Score=68.13 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=53.0
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~ 140 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++.
T Consensus 51 ~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 51 PDTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred CcchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 34579999988 89999999999999999999999999999988999999999999864
No 98
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.64 E-value=4.7e-08 Score=81.02 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=58.7
Q ss_pred CCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 77 APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 77 ~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
.....+.+|+++|.+ ++++++.++.+.||+++|..++++++.|+|.+|+++|+||..|++....
T Consensus 228 a~g~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 228 ANGNLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred HcCCccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 444567899999999 9999999999999999999999999999999999999999999997643
No 99
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=1.4e-07 Score=66.31 Aligned_cols=56 Identities=27% Similarity=0.537 Sum_probs=51.5
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...+.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 4478999988 8899999999999999999999999999998899999999999875
No 100
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=1.3e-07 Score=68.30 Aligned_cols=57 Identities=37% Similarity=0.622 Sum_probs=52.6
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 34578999988 8999999999999999999999999999998899999999999975
No 101
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.57 E-value=1.7e-07 Score=66.87 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=50.7
Q ss_pred ccccccccccCCCeEEEcCC--CCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~--~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.++ +++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 3578899988 78888887 78999999999999999999998899999999999976
No 102
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=2.1e-07 Score=67.52 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=47.5
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 86 ~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++|.. ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|+..
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 456777 8999999999999999999999999999998899999999999853
No 103
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.56 E-value=9.4e-08 Score=81.38 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=54.3
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
...++.++|.+ ++.++.+++++.+|++.|.+++...+||+|++|+++|+||.+|++++.
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~~ 319 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAG 319 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhcc
Confidence 34578999998 899999999999999999999999999999889999999999998764
No 104
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.55 E-value=2.2e-07 Score=65.01 Aligned_cols=68 Identities=28% Similarity=0.448 Sum_probs=55.2
Q ss_pred cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
|.+...++.......++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|++.
T Consensus 37 Giv~~~~l~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 37 GIITSRDVRRAHPNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred EEEehHHhhcccccCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 33444443222234478999988 8999999999999999999999999999996 99999999999863
No 105
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=2e-07 Score=67.32 Aligned_cols=59 Identities=22% Similarity=0.418 Sum_probs=51.2
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~ 139 (182)
...+++++|....++.++.+++++.++++.|.++++..+||+|++ |+++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 355788899732268899999999999999999999999999977 69999999999865
No 106
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=1.7e-07 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=51.4
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.. ++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 34578999988 8999999999999999999999999999996 99999999999875
No 107
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=1.7e-07 Score=67.57 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=52.1
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 34578899987 8999999999999999999999999999998899999999999875
No 108
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=1.6e-07 Score=66.68 Aligned_cols=55 Identities=38% Similarity=0.597 Sum_probs=50.5
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3478899988 8999999999999999999999999999997 99999999999864
No 109
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=1.7e-07 Score=66.48 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=51.3
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 4578899988 8999999999999999999999999999998899999999999874
No 110
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=1.4e-07 Score=66.88 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=51.0
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 478999988 8999999999999999999999999999997799999999999865
No 111
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=3.4e-07 Score=64.93 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=50.6
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.. ++.++.+++++.++++.|.+++...+||+| +|+++|+||.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 3579999988 889999999999999999999999999999 699999999999975
No 112
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.51 E-value=1.5e-07 Score=66.70 Aligned_cols=55 Identities=35% Similarity=0.541 Sum_probs=51.7
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC-CCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~-~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++.+|++.
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 689999998 8999999999999999999999999999997 799999999999875
No 113
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=3.3e-07 Score=64.84 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=42.6
Q ss_pred eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHh
Q 030127 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (182)
Q Consensus 95 ~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~ 139 (182)
+.++.+++++.+|++.|.+++++.+||+|++ |+++|+||.+|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 6889999999999999999999999999987 99999999999875
No 114
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=4.3e-07 Score=64.52 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=52.1
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 34578999988 8999999999999999999999999999998899999999999875
No 115
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=2.8e-07 Score=65.81 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=50.7
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578899975224678999999999999999999999999998899999999999865
No 116
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.49 E-value=4.1e-07 Score=64.46 Aligned_cols=55 Identities=38% Similarity=0.606 Sum_probs=51.4
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 479999998 8899999999999999999999999999998899999999999975
No 117
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.49 E-value=2.2e-07 Score=65.56 Aligned_cols=55 Identities=42% Similarity=0.636 Sum_probs=50.9
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 367889988 8999999999999999999999999999998899999999999875
No 118
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.48 E-value=3.3e-07 Score=65.01 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=51.1
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+..|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 578999988 8899999999999999999999999999998899999999999875
No 119
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.48 E-value=4.2e-07 Score=64.96 Aligned_cols=56 Identities=39% Similarity=0.748 Sum_probs=51.9
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 4578899988 8999999999999999999999999999998899999999999975
No 120
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.48 E-value=4.8e-07 Score=64.67 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=50.8
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+|++ |+++|+|+.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 458889988 89999999999999999999999999999987 79999999999975
No 121
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.48 E-value=2.7e-07 Score=82.62 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=61.1
Q ss_pred cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127 69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (182)
Q Consensus 69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~ 143 (182)
|.+..+++.......+++++|++ ++.++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus 181 GvV~l~dLl~a~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 181 GVLSIRDLILAKPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred EEEEHHHHhcCCCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 44445554333345689999998 89999999999999999999999999999999999999999999976544
No 122
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.48 E-value=1.5e-07 Score=69.58 Aligned_cols=56 Identities=38% Similarity=0.481 Sum_probs=51.6
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+| +|+++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 34579999988 899999999999999999999999999999 899999999999875
No 123
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.48 E-value=3.4e-07 Score=64.36 Aligned_cols=55 Identities=27% Similarity=0.547 Sum_probs=51.2
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 478899988 8999999999999999999999999999998899999999999875
No 124
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.47 E-value=5.5e-07 Score=63.21 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=50.0
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++|.+ .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+++++
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 58899988 7888999999999999999999999999998899999999999875
No 125
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=5.3e-07 Score=64.87 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=52.3
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 45678999988 8999999999999999999999999999998899999999999975
No 126
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=5.1e-07 Score=65.20 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=45.9
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++|.. ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 69 ~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 69 SQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 34445 6789999999999999999999999999998899999999999875
No 127
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.46 E-value=3.5e-07 Score=64.55 Aligned_cols=57 Identities=35% Similarity=0.491 Sum_probs=52.1
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 35678999988 8999999999999999999999999999998899999999999875
No 128
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=2.6e-07 Score=67.55 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=48.2
Q ss_pred cccccccccccCCCeEEE------cCCCCHHHHHHHHHHcCCCEEEEeeCC-CcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v------~~~~tl~ea~~~m~~~~~~~lPVvD~~-g~lvGiVt~~Dll~ 139 (182)
...+++++|.+ +...+ .+++++.++++.|.+++...+||+|++ |+++|+||.+|+++
T Consensus 62 ~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 45679999987 54333 368899999999999999999999987 89999999999875
No 129
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.45 E-value=4.6e-07 Score=82.26 Aligned_cols=62 Identities=32% Similarity=0.368 Sum_probs=55.7
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
..+.+|+++|++..+++++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++..
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 34568999999644789999999999999999999999999999889999999999998754
No 130
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.45 E-value=6.4e-07 Score=63.08 Aligned_cols=56 Identities=38% Similarity=0.519 Sum_probs=49.8
Q ss_pred ccccccccccCCCeEEEcC-CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~-~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.. .+..+.+ ++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4578999987 6676666 999999999999999999999998899999999999875
No 131
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.45 E-value=3.7e-07 Score=68.16 Aligned_cols=55 Identities=31% Similarity=0.583 Sum_probs=50.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..+++++|.+ ++..+.+++++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 4579999988 8899999999999999999999999999996 99999999999875
No 132
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.45 E-value=5.5e-07 Score=65.07 Aligned_cols=56 Identities=41% Similarity=0.723 Sum_probs=51.6
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3478899988 8999999999999999999999999999997799999999999976
No 133
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.43 E-value=5.1e-07 Score=81.53 Aligned_cols=59 Identities=31% Similarity=0.417 Sum_probs=54.6
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
..+++++|++ ++.++++++++.+|++.|.++++..+||+|++|+++|+||.+||++...
T Consensus 147 ~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 147 FTQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI 205 (479)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 3579999998 9999999999999999999999999999998899999999999987543
No 134
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.43 E-value=5.4e-07 Score=81.32 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=60.3
Q ss_pred cceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 69 GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 69 g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
|.+...++.......+++++|++ +++++.+++++.+|+++|.++++..+||+|++|+++|+||.+||++...
T Consensus 132 GIVT~rDL~~~~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 132 GLVTDSDLLGVDRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred EEEEHHHhhcCCCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 44544444333344679999998 9999999999999999999999999999998899999999999987543
No 135
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.43 E-value=7.8e-07 Score=62.96 Aligned_cols=56 Identities=41% Similarity=0.673 Sum_probs=51.7
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+| +|+++|+||.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45689999988 899999999999999999999999999999 899999999999875
No 136
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.42 E-value=6.3e-07 Score=64.18 Aligned_cols=55 Identities=35% Similarity=0.455 Sum_probs=49.4
Q ss_pred cccccccccCCCeEEEcC--CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~--~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.+++++|.. ...++.. ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 468899988 6777755 999999999999999999999998899999999999874
No 137
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.42 E-value=3.5e-07 Score=78.16 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=53.2
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
...+|+++|++ ++.++.+++++.+|++.|.++++..+||+| +|+++|+||.+|+++..
T Consensus 267 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~ 324 (326)
T PRK10892 267 RQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG 324 (326)
T ss_pred ccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence 34689999998 899999999999999999999999999998 68999999999998753
No 138
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=8.1e-07 Score=62.94 Aligned_cols=54 Identities=44% Similarity=0.621 Sum_probs=50.5
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 58999988 8999999999999999999999999999998899999999999975
No 139
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=9.5e-07 Score=62.37 Aligned_cols=55 Identities=40% Similarity=0.600 Sum_probs=50.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 4579999988 8999999999999999999999999999996 99999999999975
No 140
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=7e-07 Score=63.39 Aligned_cols=55 Identities=38% Similarity=0.607 Sum_probs=50.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+++...+||+|+ |+++|+||.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 4578999988 8899999999999999999999999999996 99999999999975
No 141
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=5.8e-07 Score=66.11 Aligned_cols=53 Identities=36% Similarity=0.605 Sum_probs=49.8
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++|.+ ++..+.+++++.++++.|.+.+...+||+|+ |+++|++|.+|+++
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 78899988 8999999999999999999999999999997 99999999999975
No 142
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.40 E-value=9.6e-07 Score=62.47 Aligned_cols=55 Identities=40% Similarity=0.569 Sum_probs=50.9
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.. ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 3578999988 8999999999999999999999999999996 99999999999975
No 143
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=8e-07 Score=63.26 Aligned_cols=54 Identities=28% Similarity=0.538 Sum_probs=48.6
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 62 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 4578999998 8999999999999999998765 5899998899999999999875
No 144
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.37 E-value=1.2e-06 Score=61.87 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=50.9
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.. ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 578889987 8999999999999999999999999999998899999999999874
No 145
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.4e-06 Score=63.53 Aligned_cols=51 Identities=22% Similarity=0.420 Sum_probs=46.8
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 87 diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
+.|.. ++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 46666 7899999999999999999999999999998899999999999875
No 146
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=1.3e-06 Score=62.86 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=51.2
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.. ++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 468899988 8999999999999999999999999999998899999999999975
No 147
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.34 E-value=1.7e-06 Score=61.31 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=50.8
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++..+.+++++.++++.|.+++...+||+|+ |+++|+|+.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 34578899988 8999999999999999999999999999984 89999999999875
No 148
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=9.9e-07 Score=63.36 Aligned_cols=56 Identities=38% Similarity=0.657 Sum_probs=51.3
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.. ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 34578899988 8999999999999999999999999999997 99999999999975
No 149
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.6e-06 Score=61.17 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=50.2
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++|.+ ++.++.+++++.++++.|.+.+...+||++++|+++|+|+..|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 58899987 8999999999999999999999999999998899999999999864
No 150
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.33 E-value=1.8e-06 Score=60.64 Aligned_cols=55 Identities=35% Similarity=0.522 Sum_probs=47.0
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
+..+++... .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+++
T Consensus 41 ~~~dl~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 41 TERDLIAKS-EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EHHHHhcCC-CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 445554431 3789999999999999999999999999998899999999999975
No 151
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.33 E-value=1.7e-06 Score=61.02 Aligned_cols=53 Identities=30% Similarity=0.492 Sum_probs=49.0
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
++.++|.+ .+.++.+++++.++++.|.+++...+||+| +|+++|+||.+|++.
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57888988 889999999999999999999999999998 699999999999875
No 152
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.32 E-value=2.3e-07 Score=68.19 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=50.4
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHH---------HcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~---------~~~~~~lPVvD~~g~lvGiVt~~Dll~~ 140 (182)
....+++++|.+ ++.++.+++++.+++++|. +.+...+||+|++|+++|+||.+|++++
T Consensus 56 ~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 56 QPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 345699999999 9999999999999999653 3356778899988999999999999864
No 153
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.32 E-value=2.1e-06 Score=60.80 Aligned_cols=56 Identities=34% Similarity=0.665 Sum_probs=50.5
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|++ +++|+|+.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 34578999988 89999999999999999999999999999965 9999999999874
No 154
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.32 E-value=1.1e-06 Score=75.82 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=73.6
Q ss_pred ccccchhhhhhhcccCcccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcE
Q 030127 49 LATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128 (182)
Q Consensus 49 ~~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~l 128 (182)
.|--||++...... -|.+..++...+..+.++..+|++ ++.++.+.+++..+.+.|...++.-+||+|++.++
T Consensus 220 ~~sRfPVvn~~~kv-----vGvVt~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~l 292 (432)
T COG4109 220 GHSRFPVVNRSMKV-----VGVVTMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTL 292 (432)
T ss_pred CCCccceecccceE-----EEEEEehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCceE
Confidence 44455666654443 355667777788888999999999 99999999999999999999999999999999999
Q ss_pred EEEEeHHHHHhccc
Q 030127 129 VGLVSDYDLLALDS 142 (182)
Q Consensus 129 vGiVt~~Dll~~~~ 142 (182)
+|+||++|+++.+.
T Consensus 293 lGiitR~dvlk~lq 306 (432)
T COG4109 293 LGIITRQDVLKSLQ 306 (432)
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999997654
No 155
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.31 E-value=2.6e-06 Score=50.46 Aligned_cols=47 Identities=40% Similarity=0.667 Sum_probs=42.6
Q ss_pred eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 95 ~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
+.++.+++++.++++.|.+.++..+||++++++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 56788999999999999999999999999889999999999997653
No 156
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.30 E-value=2.4e-06 Score=64.10 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=45.3
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+.+|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 6789999999999999999999999999998899999999999987654
No 157
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.30 E-value=2.6e-06 Score=72.36 Aligned_cols=92 Identities=22% Similarity=0.214 Sum_probs=70.3
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC----CceeEeec
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD----NSMFPEVD 158 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~----~~~~pVvd 158 (182)
..+.++|.+ +.++++++++.++++.|++++...+||+|+.|.++|+||.+|++......-....+ ......-+
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~ 209 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSR 209 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCC
Confidence 457889976 56899999999999999999999999999989999999999999876543211111 11222223
Q ss_pred CCCcEEEEEeHHHHHHHhh
Q 030127 159 STWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 159 ~~~k~~GiVt~~dil~~l~ 177 (182)
..+.+-|.++..++.+.++
T Consensus 210 ~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 210 HTWTVRALASIEDFNEAFG 228 (292)
T ss_pred CeEEEEeccCHHHHHHHhC
Confidence 3456789999999988875
No 158
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.29 E-value=2.2e-06 Score=60.99 Aligned_cols=53 Identities=45% Similarity=0.747 Sum_probs=49.4
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHH-cCCCEEEEeeCCC-cEEEEEeHHHHH
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL 138 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~-~~~~~lPVvD~~g-~lvGiVt~~Dll 138 (182)
++.++|+. ++.++.++.++.++++.|.+ +++..+||+|+++ +++|+++..|+.
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 58999998 89999999999999999999 7999999999886 999999999973
No 159
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.29 E-value=3.4e-06 Score=74.23 Aligned_cols=85 Identities=25% Similarity=0.257 Sum_probs=73.8
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------------------- 145 (182)
++..+..++++.+|++.|.+.+++.+||+|++|+.+|.++..|+........
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~ 317 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRP 317 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEee
Confidence 5889999999999999999999999999999999999999999976433211
Q ss_pred ----------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 146 ----------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 146 ----------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
+...+...+.|+|+++++.|+|+..|++..+..
T Consensus 318 ~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 318 TSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred cchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 335677889999999999999999999998753
No 160
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.28 E-value=2.2e-06 Score=60.62 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=47.8
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..+.++| . ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 57 ~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3566666 4 5789999999999999999999999999998899999999999864
No 161
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-06 Score=74.02 Aligned_cols=89 Identities=28% Similarity=0.324 Sum_probs=69.7
Q ss_pred ccchhhhhhhcccCcccCcceeccc------cCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeC
Q 030127 51 TSSDRVSALRRSSAVFASGTLTANS------AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124 (182)
Q Consensus 51 r~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~ 124 (182)
|..|+++..++..+.+....+.... -......-+++.+|++ ...++.++++..+.+-.+.+.+...+||+|+
T Consensus 277 kaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~ 354 (382)
T COG3448 277 KALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDA 354 (382)
T ss_pred ccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence 6778888777776664333222200 0012245589999998 8999999999999999999999999999999
Q ss_pred CCcEEEEEeHHHHHhcc
Q 030127 125 DWKLVGLVSDYDLLALD 141 (182)
Q Consensus 125 ~g~lvGiVt~~Dll~~~ 141 (182)
+|+++||||..|++.+.
T Consensus 355 ~g~lvGIvsQtDliaal 371 (382)
T COG3448 355 AGKLVGIVSQTDLIAAL 371 (382)
T ss_pred CCcEEEEeeHHHHHHHH
Confidence 99999999999998754
No 162
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.26 E-value=1.8e-06 Score=78.87 Aligned_cols=59 Identities=29% Similarity=0.519 Sum_probs=54.8
Q ss_pred cccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 81 ~~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
...+|+++|+ + ++.++++++++.++.+.|.+++++.+||+|++|+++|+|+.+|++...
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV 303 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence 4568999999 7 899999999999999999999999999999999999999999999754
No 163
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.25 E-value=2.1e-06 Score=78.02 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=55.3
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
.+.+|.++|++..++.++.+++++.+|++.|.++++..+||+|++++++|+||.+|+++...
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 45689999998223889999999999999999999999999998999999999999997654
No 164
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=2.7e-06 Score=61.94 Aligned_cols=56 Identities=27% Similarity=0.432 Sum_probs=50.1
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEee--CCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD--~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ +++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 3578899988 899999999999999999999999999984 4699999999999875
No 165
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.25 E-value=3.3e-06 Score=60.51 Aligned_cols=56 Identities=38% Similarity=0.595 Sum_probs=51.1
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
...++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ |+++|+++.+|+++
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 34578899988 8999999999999999999999999999996 99999999999875
No 166
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=3.7e-06 Score=59.13 Aligned_cols=54 Identities=37% Similarity=0.551 Sum_probs=48.9
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.. ++.++.+++++.++++.|.+.+...+||+| +|+++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 457888887 889999999999999999999999999999 479999999999875
No 167
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.20 E-value=1.6e-06 Score=79.70 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=53.0
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHhcc
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD 141 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~~~ 141 (182)
..++.|+|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+++..
T Consensus 511 ~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 511 DKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred cchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 3578999998 89999999999999999999999999999876 5899999999998764
No 168
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.19 E-value=4.7e-06 Score=75.62 Aligned_cols=61 Identities=34% Similarity=0.447 Sum_probs=55.4
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
...+|+++|++.+++.++.+++++.+++++|.++++..+||+|++++++|+||.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 3568999998655789999999999999999999999999999999999999999999764
No 169
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.19 E-value=5.1e-06 Score=59.13 Aligned_cols=49 Identities=22% Similarity=0.489 Sum_probs=45.8
Q ss_pred ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
+|.+ ++.++++++++.++++.|.+++...+||++ +|+++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 7887 899999999999999999999999999996 789999999999875
No 170
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.15 E-value=1.2e-05 Score=71.21 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=75.7
Q ss_pred CcceeccccCC--CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127 68 SGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (182)
Q Consensus 68 ~g~~~~~~~~~--~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~ 145 (182)
-|.+..+++.. .....++.++|.+ +.++++++++.++++.|++++....+|+|+.|.++|+||.+|++.....+-
T Consensus 238 vGiv~~kDll~~~~~~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei 314 (408)
T TIGR03520 238 TGVLYIKDLLPHLNKKNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI 314 (408)
T ss_pred EEEEEHHHHHhHhccCCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence 44455555421 1123457788865 789999999999999999999999999999899999999999998764332
Q ss_pred Ccc---CCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 146 SGR---ADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 146 ~~~---~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
..+ .+..+...-+..+.+-|.++.+++.+.++
T Consensus 315 ~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 315 SDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred CCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhC
Confidence 111 11112222233456778999999988874
No 171
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=6.4e-06 Score=58.90 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=48.8
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCC---EEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~---~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++..+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|+++
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 4579999988 899999999999999999988753 4478888899999999999875
No 172
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.12 E-value=8.5e-06 Score=56.46 Aligned_cols=53 Identities=43% Similarity=0.771 Sum_probs=49.1
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
+.++|.. ++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 6678888 8999999999999999999999999999998899999999999875
No 173
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2.6e-06 Score=76.36 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=66.1
Q ss_pred CcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127 68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (182)
Q Consensus 68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~ 143 (182)
.|.+....+.....+.+++++|.+ +++.+.++++.+++++.+.+++.-.+||+|++++++|+||..|+......
T Consensus 181 ~Gvvsl~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 181 LGVVSLRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred EEEeeHHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 566667777667788899999999 89999999999999999999999999999999999999999999876543
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=2.3e-05 Score=69.37 Aligned_cols=99 Identities=20% Similarity=0.145 Sum_probs=73.5
Q ss_pred cccccccccCCC-eEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC----------------
Q 030127 83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---------------- 145 (182)
Q Consensus 83 ~~V~diM~~~~~-~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~---------------- 145 (182)
.++.++|.+... .+...++....+++..|.+.+.+.+.|+|++++++|+|+.+++.+......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQQGLDAALIDAPLAVDAQ 353 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcCCchhhhhccCCceeCCC
Confidence 466677754101 123446778999999999999999999999999999999999875321100
Q ss_pred --------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhccc
Q 030127 146 --------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRWWV 181 (182)
Q Consensus 146 --------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~~~ 181 (182)
........+||+|++++++|+|++.++++.+.+..+
T Consensus 354 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 397 (400)
T PRK10070 354 TPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRALDREGV 397 (400)
T ss_pred CCHHHHHHHHHhCCCcEEEECCCCcEEEEEEHHHHHHHHHhcCC
Confidence 111233449999999999999999999999987643
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.11 E-value=3.4e-06 Score=69.81 Aligned_cols=51 Identities=35% Similarity=0.434 Sum_probs=47.1
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEe
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt 133 (182)
...+++++|.+ ++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 34679999998 8999999999999999999999999999998899999985
No 176
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.09 E-value=8.4e-06 Score=57.15 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=46.4
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
.++.++|.+ ++.++++++++.++++.|.+ . ..+||+|++|+++|+||.+|+++
T Consensus 57 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 578899987 88999999999999999988 3 34789988899999999999875
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.07 E-value=1.2e-05 Score=72.24 Aligned_cols=58 Identities=34% Similarity=0.512 Sum_probs=54.0
Q ss_pred ccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 82 ~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
..+++++|+ . ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 457999998 5 799999999999999999999999999999999999999999999864
No 178
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.07 E-value=1.3e-05 Score=60.12 Aligned_cols=55 Identities=31% Similarity=0.642 Sum_probs=50.5
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+++ |+++|+|+.+|++.
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 4578899988 8999999999999999999999999999997 99999999999874
No 179
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.01 E-value=5.7e-05 Score=66.11 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=67.9
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-------------------------Ccc
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-------------------------SGR 148 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~-------------------------~~~ 148 (182)
......++.+..++++.|...+...+.|+|+++++.|.|+.+++.......+ +..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKAQGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcCCchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 3445667778999999999999999999999999999999999875422110 223
Q ss_pred CCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127 149 ADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW 179 (182)
Q Consensus 149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~ 179 (182)
.+.. +||+|++++++|+|++.++++.+.+.
T Consensus 331 ~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 331 AGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 3444 99999999999999999999998764
No 180
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.98 E-value=2.7e-05 Score=70.51 Aligned_cols=58 Identities=40% Similarity=0.567 Sum_probs=53.4
Q ss_pred ccccccccc-cCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 82 ~~~V~diM~-~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
..++.++|. . +++++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus 146 ~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 146 SQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 457999998 5 789999999999999999999999999999999999999999998654
No 181
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.91 E-value=2.6e-05 Score=70.87 Aligned_cols=62 Identities=27% Similarity=0.354 Sum_probs=56.9
Q ss_pred CCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 78 ~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
......+|+++|+. +++++..++.+-||+-.|.++++.++||++ +|+++|+||..||+++..
T Consensus 209 g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 209 GRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred CCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 34566799999999 999999999999999999999999999998 799999999999998754
No 182
>PRK11573 hypothetical protein; Provisional
Probab=97.72 E-value=0.00021 Score=63.51 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=67.1
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC----CceeEeecCC
Q 030127 85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD----NSMFPEVDST 160 (182)
Q Consensus 85 V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~----~~~~pVvd~~ 160 (182)
+.++|. ++.+++++.++.++++.|++++.....|+|+.|...|+||.+|++.....+-..+.+ ......-+..
T Consensus 257 l~~~~r---~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~ 333 (413)
T PRK11573 257 MLRAAD---EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGS 333 (413)
T ss_pred HHhhcc---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCE
Confidence 335554 488999999999999999999988888999999999999999999866543212111 1122222334
Q ss_pred CcEEEEEeHHHHHHHhh
Q 030127 161 WKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 161 ~k~~GiVt~~dil~~l~ 177 (182)
+.+-|.++..|+.+.++
T Consensus 334 ~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 334 VIIDGTANVREINKAFN 350 (413)
T ss_pred EEEEeeeEHHHHHHHhC
Confidence 56779999999988874
No 183
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.71 E-value=4.3e-05 Score=67.25 Aligned_cols=83 Identities=30% Similarity=0.389 Sum_probs=67.7
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC---CcEEEEEeHHHHHhccccCC-------------------------
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISG------------------------- 145 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~---g~lvGiVt~~Dll~~~~~~~------------------------- 145 (182)
+++++.|+.++.++++....+++..+||.++. .+|+|+||.+|+-.......
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~~~~~~~gi~l~~~nei 196 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKNPVTGAQGITLKEANEI 196 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccccccccccccHHHHHHH
Confidence 67999999999999999999999999999643 68999999999865422110
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
+.+.+-..+||++++++++.++++.|+.+..
T Consensus 197 L~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 197 LKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred HHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 2234445689999999999999999998764
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.53 E-value=0.00019 Score=62.84 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=51.0
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
.+.+.|.+ ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++....
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 57778877 788999999999999999999998 999999999999999999987654
No 185
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.39 E-value=0.001 Score=59.31 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=65.1
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCCC----ceeEeecCCCcEEEEEeH
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADN----SMFPEVDSTWKVHSTRCR 169 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~~----~~~pVvd~~~k~~GiVt~ 169 (182)
++..++++.++.++++.|++.+..-..|+|+.|.+.|+||.+|++.....+-..+.+. ...-..++.+.+-|.+..
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l 359 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPL 359 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccH
Confidence 5899999999999999999999888889999999999999999998766543222221 222222333456799999
Q ss_pred HHHHHHhhh
Q 030127 170 SCLVKPMGR 178 (182)
Q Consensus 170 ~dil~~l~~ 178 (182)
+++.+.++-
T Consensus 360 ~e~~~~l~~ 368 (429)
T COG1253 360 EELEELLGI 368 (429)
T ss_pred HHHHHHhCC
Confidence 998887753
No 186
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.35 E-value=0.00029 Score=62.76 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=46.4
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
..++.++|.+ ++.++.+++++.++++.|.+++ .+||+++|+++|+||.+|+++..
T Consensus 399 ~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 399 DDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 4579999988 8899999999999999998754 35555579999999999998753
No 187
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.24 E-value=0.00053 Score=53.50 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=48.8
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
....+|.++|.. .+.++++++++..+-.++.++. .+.|+ ++|+++||||..|+++...
T Consensus 127 i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 127 IRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred hhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 356799999999 8999999999998888877654 56677 4899999999999998653
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00067 Score=60.16 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=52.0
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~ 145 (182)
..+.+.+.+ ...++.+++++.+++..|.+.... +||+|++|+++|+|+..++++.....+
T Consensus 337 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 337 QGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred Cchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence 357777877 789999999999999999997766 999999999999999999998765443
No 189
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.12 E-value=0.0011 Score=58.46 Aligned_cols=51 Identities=33% Similarity=0.511 Sum_probs=47.2
Q ss_pred CCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127 93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (182)
Q Consensus 93 ~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~ 143 (182)
+.+++|.++.++.++++.|..++..++.|+|++|.++|+|+..|++.....
T Consensus 310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 467999999999999999999999999999999999999999999987654
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0007 Score=59.81 Aligned_cols=71 Identities=30% Similarity=0.341 Sum_probs=59.4
Q ss_pred cceeccccCC-CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 69 GTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 69 g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
|.+...++.+ +.....+.++|++ ++++.+.+.+++++-+++.+++...+||+|++|+++-+++..||.+..
T Consensus 156 G~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 156 GIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred EEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 4444444422 4456788999999 779999999999999999999999999999999999999999998643
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00053 Score=63.32 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=55.7
Q ss_pred cccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC-----CcEEEEEeHHHHHhc
Q 030127 74 NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLAL 140 (182)
Q Consensus 74 ~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~-----g~lvGiVt~~Dll~~ 140 (182)
|+-.....+++++|+|.+ ++++++.-+.+..+.+.++...+..+||+|+. +++.|+|-.+.++..
T Consensus 573 ~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vl 642 (762)
T KOG0474|consen 573 WEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVL 642 (762)
T ss_pred CCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHH
Confidence 444555677899999999 99999999999999999999999999999853 478999999888643
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.0062 Score=53.44 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=63.3
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCCCccCC---CceeEeecC
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD---NSMFPEVDS 159 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~---~~~~pVvd~ 159 (182)
.+-.+++.-..++.++++.+++.+-+..|++.+-..-.||||-|.+.|+||.+|++.-+...--...+ ....+--|.
T Consensus 265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dg 344 (423)
T COG4536 265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDG 344 (423)
T ss_pred ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCC
Confidence 34455554333689999999999999999999888888999999999999999999765432211111 111111121
Q ss_pred CCcEEEEEeHHHHHHHh
Q 030127 160 TWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 160 ~~k~~GiVt~~dil~~l 176 (182)
.--.-|-.+..|+.+++
T Consensus 345 s~iidGs~~iRdlNr~l 361 (423)
T COG4536 345 SFIIDGSANVRDLNRAL 361 (423)
T ss_pred cEEEeCCCcHHHHHHhc
Confidence 22234666777777665
No 193
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.31 E-value=0.0052 Score=45.87 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=30.2
Q ss_pred CeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC
Q 030127 94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD 125 (182)
Q Consensus 94 ~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~ 125 (182)
++.++.+++++.+|++.|.++++..+||+|++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 78999999999999999999999999999865
No 194
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.017 Score=53.51 Aligned_cols=45 Identities=27% Similarity=0.562 Sum_probs=37.0
Q ss_pred eEEEcCC-CCHHHHHHHHHHcCCCEEEEe-eC-CCcEEEEEeHHHHHh
Q 030127 95 LHVVKPT-TTVDEALEILVEKRITGFPVI-DD-DWKLVGLVSDYDLLA 139 (182)
Q Consensus 95 ~~~v~~~-~tl~ea~~~m~~~~~~~lPVv-D~-~g~lvGiVt~~Dll~ 139 (182)
..++..+ .+++|...+|.++.++.+||+ ++ ..+++|+|..+|+.-
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~ 605 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFL 605 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHH
Confidence 4555554 899999999999999999988 33 378999999999864
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0093 Score=55.36 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=51.8
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 83 ~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
+....+|++ .++++.+++++..+..++++-+.+++.|+++..+++|++|.+|++...
T Consensus 690 vDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 690 VDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 355678998 899999999999999999999999999999889999999999998654
No 196
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.01 E-value=0.0086 Score=51.83 Aligned_cols=99 Identities=23% Similarity=0.176 Sum_probs=69.9
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC---------------
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--------------- 145 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~--------------- 145 (182)
.-++++++|.+......-.+...-..+...+.......+.+++.+++.+|+|+..++........
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~v~~d~~~~~~~~ 351 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAALIDDVLTVDADTPLSEILA 351 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccccccccccCccchHHHHHH
Confidence 34577888885212233333444566788888888777778887788999999999876411111
Q ss_pred CccCCCceeEeecCCCcEEEEEeHHHHHHHhhhc
Q 030127 146 SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGRW 179 (182)
Q Consensus 146 ~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~~ 179 (182)
........++|+|+++++.|++++.++++++.+.
T Consensus 352 ~~~~~~~p~aVvde~~r~vG~i~~~~vl~aL~~~ 385 (386)
T COG4175 352 RIRQAPCPVAVVDEDGRYVGIISRGELLEALARI 385 (386)
T ss_pred HHhcCCCceeEEcCCCcEEEEecHHHHHHHHhcC
Confidence 1134455788999999999999999999998753
No 197
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=95.88 E-value=0.01 Score=37.10 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=26.9
Q ss_pred ccCCCceeEeecCCCcEEEEEeHHHHHHHhh
Q 030127 147 GRADNSMFPEVDSTWKVHSTRCRSCLVKPMG 177 (182)
Q Consensus 147 ~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~ 177 (182)
...+...+||+|++++++|+++..++++.+.
T Consensus 26 ~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 26 RKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred HHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 3455778999999999999999999999874
No 198
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.07 E-value=0.049 Score=48.11 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=44.3
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
.+.+ +.. +..++++++++.+++..+.+.+.. ++|+|+ |+++|+|+..+++...
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHAL 379 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHH
Confidence 4666 555 688999999999999988887654 788885 9999999999998765
No 199
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=94.27 E-value=0.13 Score=42.91 Aligned_cols=108 Identities=21% Similarity=0.229 Sum_probs=72.2
Q ss_pred CcceeccccCC----CccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127 68 SGTLTANSAAP----SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (182)
Q Consensus 68 ~g~~~~~~~~~----~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~ 143 (182)
.|.++++++.. ......+.++..+ .+++++...+...++.++.++.....|+|+-|.+-|+||.+|++..+..
T Consensus 114 ~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 114 EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 55666666522 2223566677665 7889999999999999998888888899999999999999999976543
Q ss_pred CC---Cc-cCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 144 SG---SG-RADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 144 ~~---~~-~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
.- +. .......+.-+..+.+-+.-..++..+.++.
T Consensus 191 dIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 191 DIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred ccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcC
Confidence 21 11 1122234444455555566666666665543
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.12 Score=48.08 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
.....+++|.. .+.++...++++-+++++++-+..++.|.. +|++.|+||.+|+++..
T Consensus 637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 44678889988 899999999999999999999999987765 89999999999998754
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.70 E-value=0.26 Score=43.59 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=54.4
Q ss_pred ccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc------------c----
Q 030127 80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS------------I---- 143 (182)
Q Consensus 80 ~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~------------~---- 143 (182)
..-+++.++|.+ ...+...+.. .+++. .+.+.+.|+|+ |+++..+...+.. .
T Consensus 271 ~~~l~a~~~m~~---~~~~~~~~~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (382)
T TIGR03415 271 LNVLTARSLMRP---LTDLEHVDGG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAAEQEVESLEAAPTVI 338 (382)
T ss_pred ccceeHHHHhcc---cccccccCcc-hhhhh---cccceeEeecc-----ceecccchHhHhhcccccchhhhcccCccc
Confidence 345688889955 3333222222 34433 78888999985 7887766554221 0
Q ss_pred C-C--------CccCCCceeEeecCCCcEEEEEeHHHHHHHhhh
Q 030127 144 S-G--------SGRADNSMFPEVDSTWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 144 ~-~--------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~l~~ 178 (182)
. . ........++|+|+ |+++|+|++.+++.++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 339 NPDTLMRDVLAARHRTGGAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CCCCcHHHHHHHHhcCCCCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 0 0 11233456778886 999999999999999865
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.73 E-value=0.33 Score=42.29 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=43.2
Q ss_pred ccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccc
Q 030127 88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142 (182)
Q Consensus 88 iM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~ 142 (182)
.+.+ .+.++..++++.+.+..+.+... .++|+|++++++|+|+...++.+..
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 4455 67889999999999988877654 5799999999999999999987654
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.50 E-value=0.19 Score=47.87 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=51.9
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCC--CcEEEEEeHHHHHhccc
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALDS 142 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~--g~lvGiVt~~Dll~~~~ 142 (182)
-.+.|+++|.+ ++.++..+.|.+|..+.+....++.+|+||+. -.|+|.|.++.|..+..
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 34689999999 99999999999999999888779999999754 46999999999976543
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.48 E-value=0.41 Score=40.54 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 104 VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 104 l~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
-.+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus 272 ~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 272 DRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred hHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 334555555666666777777777777777766653
No 205
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=90.33 E-value=0.34 Score=27.56 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred CCCceeEeecCCCcEEEEEeHHHHHHHh
Q 030127 149 ADNSMFPEVDSTWKVHSTRCRSCLVKPM 176 (182)
Q Consensus 149 ~~~~~~pVvd~~~k~~GiVt~~dil~~l 176 (182)
.+...+|+++++++++|+++..++.+.+
T Consensus 21 ~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 21 HGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred hCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 4556788998889999999999998765
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.50 E-value=1.7 Score=41.64 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=58.2
Q ss_pred ccCcceeccccCCCccccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc
Q 030127 66 FASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143 (182)
Q Consensus 66 ~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~ 143 (182)
+.+..++.|+......++...++-+.- .+..+-+.+++.++-.++.--++++..|++ .|+++|+|.+++|.+++..
T Consensus 784 ~~~eei~~we~~~l~~~ld~~~~~IDp-aPfQLve~TSL~K~HtLFSLLgL~~AYVT~-~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 784 LSAEEIKEWEEEQLSQKLDLDECAIDP-APFQLVEGTSLYKVHTLFSLLGLNHAYVTS-CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred cChhhhhHHHHHHhccccchhhCCCCC-CceeeeccchHHHHHHHHHHhccchhhhcc-cCcEEEEEEHHHHHHHHHh
Confidence 444455555555555566666665541 567788899999999999999999999998 6999999999999987654
No 207
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=84.23 E-value=1 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=22.4
Q ss_pred cCCCceeEeecCCCcEEEEEeHHHHHH
Q 030127 148 RADNSMFPEVDSTWKVHSTRCRSCLVK 174 (182)
Q Consensus 148 ~~~~~~~pVvd~~~k~~GiVt~~dil~ 174 (182)
..+...+||+|++++++|+++..++.+
T Consensus 86 ~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 86 EHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 345568999999999999999998864
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.17 E-value=3.2 Score=35.32 Aligned_cols=69 Identities=25% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhccccCC-----------------------------------
Q 030127 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----------------------------------- 145 (182)
Q Consensus 101 ~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~----------------------------------- 145 (182)
+-.+.||+.+- +.+.|.+ +|+++=+-+..+++..+.+..
T Consensus 193 THDidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 266 (309)
T COG1125 193 THDIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPL 266 (309)
T ss_pred ecCHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCcc
Confidence 34577777553 4578888 799999999888875433210
Q ss_pred ------------CccCCCceeEeecCCCcEEEEEeHHHHHHH
Q 030127 146 ------------SGRADNSMFPEVDSTWKVHSTRCRSCLVKP 175 (182)
Q Consensus 146 ------------~~~~~~~~~pVvd~~~k~~GiVt~~dil~~ 175 (182)
+.......+||+|++|+++|.+++.+++..
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 224455678999999999999999998764
No 209
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=75.16 E-value=11 Score=24.95 Aligned_cols=44 Identities=25% Similarity=0.176 Sum_probs=31.9
Q ss_pred EeeCCCcEEEEEeHHHHHhccccCCCccCCCceeEeecCCCcEEEEEeH
Q 030127 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVHSTRCR 169 (182)
Q Consensus 121 VvD~~g~lvGiVt~~Dll~~~~~~~~~~~~~~~~pVvd~~~k~~GiVt~ 169 (182)
|+|++|+++|-|...|+..+. .......+. ++|++|+++|-+..
T Consensus 15 V~d~~G~~vG~vveGd~k~L~-G~~vd~~G~----I~d~~G~viGkae~ 58 (64)
T PF12396_consen 15 VVDDDGNVVGRVVEGDPKKLV-GKKVDEDGD----ILDKDGNVIGKAEP 58 (64)
T ss_pred EECCCCCEEEEEecCCHHHhc-CCcCCCCCC----EECCCCCEEEEEEe
Confidence 788899999999999987754 222333333 67889999998754
No 210
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=73.14 E-value=17 Score=24.02 Aligned_cols=47 Identities=28% Similarity=0.282 Sum_probs=29.8
Q ss_pred EEEEeeCCCcEEEEE----eHHHHHhccccCCCccCCCceeEeecCCCcEEEE
Q 030127 118 GFPVIDDDWKLVGLV----SDYDLLALDSISGSGRADNSMFPEVDSTWKVHST 166 (182)
Q Consensus 118 ~lPVvD~~g~lvGiV----t~~Dll~~~~~~~~~~~~~~~~pVvd~~~k~~Gi 166 (182)
..||.+++|+++|++ +.+.+.+... .+.......+-++|++|+++.-
T Consensus 18 s~pi~~~~g~~~Gvv~~di~l~~l~~~i~--~~~~~~~g~~~ivd~~G~ii~h 68 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDISLDQLSEIIS--NIKFGNNGYAFIVDKNGTIIAH 68 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEEHHHHHHHHT--TSBBTTTBEEEEEETTSBBCE-
T ss_pred EEEEECCCCCEEEEEEEEeccceeeeEEE--eeEECCCEEEEEEECCCCEEEe
Confidence 368999889999985 4455544332 2333444566678888877643
No 211
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=58.33 E-value=18 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=21.9
Q ss_pred CCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127 116 ITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (182)
Q Consensus 116 ~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~ 145 (182)
...+-|+|++|+.+|+++.++.++.....+
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 456788899999999999999987654443
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=58.13 E-value=32 Score=32.15 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=51.5
Q ss_pred ccccccccCCCeEEEcCCCC-HHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhcccc----CC-------------
Q 030127 84 TVGDFMTTKEELHVVKPTTT-VDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SG------------- 145 (182)
Q Consensus 84 ~V~diM~~~~~~~~v~~~~t-l~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~~~~----~~------------- 145 (182)
.+.+.+.+ +-..+....+ +++..+.+...+ ..+.+.|.+|.++.+....+++..... .+
T Consensus 42 ~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnai 118 (638)
T PRK11388 42 TFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNAL 118 (638)
T ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHH
Confidence 44455555 3333444444 555555565555 678889999999999988887642211 01
Q ss_pred ---------------------CccCCCceeEeecCCCcEEEEEe
Q 030127 146 ---------------------SGRADNSMFPEVDSTWKVHSTRC 168 (182)
Q Consensus 146 ---------------------~~~~~~~~~pVvd~~~k~~GiVt 168 (182)
+..-.....|+.|.+|+++|+++
T Consensus 119 g~al~~~~pv~v~g~EH~~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 119 SLAAISGQPVKTMGDQHFKQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred HHHHhcCCceEEecHHHHHHhccCceEEeeEEEcCCCCEEEEEE
Confidence 11123345799999999999996
No 213
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=54.82 E-value=14 Score=26.49 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=13.8
Q ss_pred CEEEEeeCCCcEEEEEeHH
Q 030127 117 TGFPVIDDDWKLVGLVSDY 135 (182)
Q Consensus 117 ~~lPVvD~~g~lvGiVt~~ 135 (182)
-..||.|.+|+++|+|...
T Consensus 92 ~~~PV~d~~g~viG~V~VG 110 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSVG 110 (116)
T ss_dssp EEEEEE-TTS-EEEEEEEE
T ss_pred EEEeeECCCCcEEEEEEEE
Confidence 3479998899999999753
No 214
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=52.97 E-value=13 Score=34.10 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=37.4
Q ss_pred CccccccccccccCCCeEEEcCCCCHH-HHHHHHHHcCCCEEEEeeCC
Q 030127 79 SSGVYTVGDFMTTKEELHVVKPTTTVD-EALEILVEKRITGFPVIDDD 125 (182)
Q Consensus 79 ~~~~~~V~diM~~~~~~~~v~~~~tl~-ea~~~m~~~~~~~lPVvD~~ 125 (182)
......++++|++.+++.....+..+. +.+....+++++++||.+.+
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~ 247 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE 247 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc
Confidence 345568999999988888888888777 55556678999999999865
No 215
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=50.43 E-value=13 Score=25.68 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=16.7
Q ss_pred HHcCCCEEEEeeCCCcEEEE
Q 030127 112 VEKRITGFPVIDDDWKLVGL 131 (182)
Q Consensus 112 ~~~~~~~lPVvD~~g~lvGi 131 (182)
...+.+.=||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 45578888999999999997
No 216
>PF14044 NETI: NETI protein
Probab=47.44 E-value=25 Score=22.72 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEcCCCCHHHHHHHHHHcCCCEEEEe
Q 030127 97 VVKPTTTVDEALEILVEKRITGFPVI 122 (182)
Q Consensus 97 ~v~~~~tl~ea~~~m~~~~~~~lPVv 122 (182)
.|.++.|+.++++.|.+.|+ +||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 47789999999999999886 4443
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=44.95 E-value=35 Score=31.90 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHhc
Q 030127 101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140 (182)
Q Consensus 101 ~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~~ 140 (182)
...++.+.+...+.+=.-++|+. +++++|+|.++|+.+-
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 34577778888888888888887 7999999999999753
No 218
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=43.98 E-value=52 Score=26.58 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=43.8
Q ss_pred CCCEEEEeeCC-C---cEEEEEeHHHHHhccccCCCccCCCceeEee--c-CCCcEEEEEeHHHHHHHhhhcc
Q 030127 115 RITGFPVIDDD-W---KLVGLVSDYDLLALDSISGSGRADNSMFPEV--D-STWKVHSTRCRSCLVKPMGRWW 180 (182)
Q Consensus 115 ~~~~lPVvD~~-g---~lvGiVt~~Dll~~~~~~~~~~~~~~~~pVv--d-~~~k~~GiVt~~dil~~l~~~~ 180 (182)
.+..+||.|+- | .+.|++|-+||++........ +...+|-+ + .++.++.-+|.+++.+.++..+
T Consensus 126 ~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~--d~lllP~~ml~~~~~~fLDD~t~~el~~~lg~~v 196 (204)
T PF04459_consen 126 EVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELG--DLLLLPDVMLRHGEGVFLDDMTLEELEERLGVPV 196 (204)
T ss_pred eEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCC--CEEEECHHHhcCCCCccCCCCcHHHHHHHhCCcE
Confidence 34567776642 2 489999999998876543222 44455543 3 3677899999999999987654
No 219
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=35.58 E-value=86 Score=24.34 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=26.6
Q ss_pred CEEEEeeCCCcEEEEEeHHHHHhccccCCCccCCCceeEeecCCCcEE
Q 030127 117 TGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVH 164 (182)
Q Consensus 117 ~~lPVvD~~g~lvGiVt~~Dll~~~~~~~~~~~~~~~~pVvd~~~k~~ 164 (182)
..+.|+|++|+.+|+++....... ++. .....+.+.+++++++
T Consensus 10 e~~~~~d~~~~~~g~~~~~~~~~~----~~~-h~~~~v~v~~~~g~iL 52 (180)
T PRK15393 10 EWVDIVNENNEVIAQASREQMRAQ----CLR-HRATYIVVHDGMGKIL 52 (180)
T ss_pred eEEEEECCCCCEeeEEEHHHHhhC----CCc-eEEEEEEEECCCCeEE
Confidence 447899999999999976655432 222 2223445566556554
No 220
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=33.84 E-value=47 Score=29.67 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.1
Q ss_pred CCEEEEeeCCCcEEEEEeHHHHH
Q 030127 116 ITGFPVIDDDWKLVGLVSDYDLL 138 (182)
Q Consensus 116 ~~~lPVvD~~g~lvGiVt~~Dll 138 (182)
+..++|.|+ +.|++|-+||.
T Consensus 306 v~v~~v~n~---VagLlTg~Di~ 325 (404)
T TIGR03278 306 VNVVPVKKD---IACLITEDDLE 325 (404)
T ss_pred EEEEEecCc---ccccchHHHHH
Confidence 555666664 99999999999
No 221
>smart00594 UAS UAS domain.
Probab=32.91 E-value=29 Score=25.06 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=23.8
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCEE---EEeeCCC
Q 030127 81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGF---PVIDDDW 126 (182)
Q Consensus 81 ~~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~l---PVvD~~g 126 (182)
.+-.|.+++.. +++....+.+-.+..+++...++..+ .+++.++
T Consensus 51 ~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 51 CNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 34456666665 66665555555555555555554443 3445443
No 222
>PRK12686 carbamate kinase; Reviewed
Probab=31.78 E-value=59 Score=28.07 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCC-------CEEEEeeCCCcEEEE--EeHHHHHhccccCCCc--------cCCCceeEeecCCCcEEEEE
Q 030127 105 DEALEILVEKRI-------TGFPVIDDDWKLVGL--VSDYDLLALDSISGSG--------RADNSMFPEVDSTWKVHSTR 167 (182)
Q Consensus 105 ~ea~~~m~~~~~-------~~lPVvD~~g~lvGi--Vt~~Dll~~~~~~~~~--------~~~~~~~pVvd~~~k~~GiV 167 (182)
.++++.+.+.++ ..+||+++++.+.|+ +-..|.........+. ..+..+.---+.+++++..+
T Consensus 173 ~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~~p~ak~I~~I 252 (312)
T PRK12686 173 HDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDI 252 (312)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccCCCCCCCeECCcc
Confidence 346666777775 336888877878876 3445554332222111 11110100012345788888
Q ss_pred eHHHHHHHhh
Q 030127 168 CRSCLVKPMG 177 (182)
Q Consensus 168 t~~dil~~l~ 177 (182)
+..++.+.+.
T Consensus 253 ~~~e~~~li~ 262 (312)
T PRK12686 253 TVAEAKQYIA 262 (312)
T ss_pred CHHHHHHHhh
Confidence 8877666554
No 223
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=30.63 E-value=32 Score=24.32 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=30.1
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHHcCCCE---EEEeeC-CCcEE----EEEeHHHHHhc
Q 030127 82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG---FPVIDD-DWKLV----GLVSDYDLLAL 140 (182)
Q Consensus 82 ~~~V~diM~~~~~~~~v~~~~tl~ea~~~m~~~~~~~---lPVvD~-~g~lv----GiVt~~Dll~~ 140 (182)
+-.|.+.+.. +.+.+..+.+-.+..++....+... +.++|. +|+++ |.++.++++..
T Consensus 42 ~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~ 106 (114)
T cd02958 42 NESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQ 106 (114)
T ss_pred CHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHH
Confidence 3356666665 5655555544344555544444444 445565 45443 66666666543
No 224
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=95 Score=24.63 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.8
Q ss_pred CCCEEEEeeCCCcEEEEEeHHHHHhccccCC
Q 030127 115 RITGFPVIDDDWKLVGLVSDYDLLALDSISG 145 (182)
Q Consensus 115 ~~~~lPVvD~~g~lvGiVt~~Dll~~~~~~~ 145 (182)
+...+-++|++|.-+||++..+.+......+
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~ 47 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAG 47 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcC
Confidence 4556778899999999999999987655444
No 225
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=30.61 E-value=85 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.1
Q ss_pred EEEeeCCCcEEEEEeHHHHH
Q 030127 119 FPVIDDDWKLVGLVSDYDLL 138 (182)
Q Consensus 119 lPVvD~~g~lvGiVt~~Dll 138 (182)
++|+|++|+.+|....+...
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~ 20 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVH 20 (158)
T ss_pred CEEECCCCCEeeeeeHHHhh
Confidence 46899999999998888875
No 226
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=30.24 E-value=91 Score=26.98 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCC-------CEEEEeeCCCcEEEE--EeHHHHHhccccCCC--------ccCCCceeEeecCCCcEEEEE
Q 030127 105 DEALEILVEKRI-------TGFPVIDDDWKLVGL--VSDYDLLALDSISGS--------GRADNSMFPEVDSTWKVHSTR 167 (182)
Q Consensus 105 ~ea~~~m~~~~~-------~~lPVvD~~g~lvGi--Vt~~Dll~~~~~~~~--------~~~~~~~~pVvd~~~k~~GiV 167 (182)
.++++.+.+.+. ..+||++++|.+.|+ |-.+|.........+ +..+..+.---+.+++.+..+
T Consensus 175 ~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p~~~~i~~I 254 (313)
T PRK12454 175 IEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKV 254 (313)
T ss_pred HHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCCCCeEcccc
Confidence 456666666664 346888888888886 345555532221111 111110100013456788888
Q ss_pred eHHHHHHHhh
Q 030127 168 CRSCLVKPMG 177 (182)
Q Consensus 168 t~~dil~~l~ 177 (182)
+..++.+.+.
T Consensus 255 t~~e~~~~i~ 264 (313)
T PRK12454 255 TVEEAKKYYE 264 (313)
T ss_pred CHHHHHHHHh
Confidence 8888766553
No 227
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=30.01 E-value=1.1e+02 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=19.1
Q ss_pred HHHHHcCCCEEEEeeCCCcEEEEEeHH
Q 030127 109 EILVEKRITGFPVIDDDWKLVGLVSDY 135 (182)
Q Consensus 109 ~~m~~~~~~~lPVvD~~g~lvGiVt~~ 135 (182)
+.+.+.+...+.|.+++|+++|.+..+
T Consensus 36 ~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 36 EEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 344444446677777789999999865
No 228
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=29.25 E-value=50 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.4
Q ss_pred cCCCEEEEeeCCCcEEEEEe
Q 030127 114 KRITGFPVIDDDWKLVGLVS 133 (182)
Q Consensus 114 ~~~~~lPVvD~~g~lvGiVt 133 (182)
.+-+.=|++|+.|++||||-
T Consensus 105 ~GDSGRpi~DNsGrVVaIVL 124 (158)
T PF00944_consen 105 PGDSGRPIFDNSGRVVAIVL 124 (158)
T ss_dssp TTSTTEEEESTTSBEEEEEE
T ss_pred CCCCCCccCcCCCCEEEEEe
Confidence 44566799999999999984
No 229
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=28.43 E-value=48 Score=22.75 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=11.2
Q ss_pred CCEEEEeeCCCcEEEEE
Q 030127 116 ITGFPVIDDDWKLVGLV 132 (182)
Q Consensus 116 ~~~lPVvD~~g~lvGiV 132 (182)
....|+.|++|++.|++
T Consensus 83 ~~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 83 VRYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEEE-TTS-EEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 34578888888888875
No 230
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=27.69 E-value=39 Score=23.33 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=11.0
Q ss_pred CCCcEEEEEeHHHHHHHhhh
Q 030127 159 STWKVHSTRCRSCLVKPMGR 178 (182)
Q Consensus 159 ~~~k~~GiVt~~dil~~l~~ 178 (182)
++|+++|-||..||.+.+..
T Consensus 24 ~~gklfGSVt~~dIa~~l~~ 43 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKE 43 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHH
T ss_pred CCcceecCcCHHHHHHHHHH
Confidence 44555555555555555543
No 231
>PHA00673 acetyltransferase domain containing protein
Probab=26.63 E-value=1.4e+02 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHH
Q 030127 102 TTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137 (182)
Q Consensus 102 ~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dl 137 (182)
.+-.++++.|.+..-..+.|..++|++||.+....+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~ 75 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVT 75 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEe
Confidence 445666888888888888888778999997766543
No 232
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=25.53 E-value=66 Score=23.74 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=13.4
Q ss_pred EEEEeeCCCcEEEEEeHH
Q 030127 118 GFPVIDDDWKLVGLVSDY 135 (182)
Q Consensus 118 ~lPVvD~~g~lvGiVt~~ 135 (182)
.+||.|..|++||+-...
T Consensus 80 ifPI~d~~G~vvgF~gR~ 97 (128)
T PF08275_consen 80 IFPIRDERGRVVGFGGRR 97 (128)
T ss_dssp EEEEE-TTS-EEEEEEEE
T ss_pred EEEEEcCCCCEEEEeccc
Confidence 589999999999987654
No 233
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=25.52 E-value=57 Score=25.75 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=14.9
Q ss_pred CEEEEeeCCCcEEEEEeHHHHHhcc
Q 030127 117 TGFPVIDDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 117 ~~lPVvD~~g~lvGiVt~~Dll~~~ 141 (182)
..+-|+|++|..+|+++..+.+...
T Consensus 20 ~~Vrli~~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 20 REVRLIGDDGEQLGIVSTREALELA 44 (177)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHH
Confidence 3455566666666666666665543
No 234
>CHL00199 infC translation initiation factor 3; Provisional
Probab=24.30 E-value=63 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=20.7
Q ss_pred CCEEEEeeCCCcEEEEEeHHHHHhccccC
Q 030127 116 ITGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (182)
Q Consensus 116 ~~~lPVvD~~g~lvGiVt~~Dll~~~~~~ 144 (182)
...+-|+|++|+.+|+++..+.+......
T Consensus 24 ~~~VrlI~~~G~~lGv~~~~eAl~~A~~~ 52 (182)
T CHL00199 24 FPKVRVIDDSGEQLGIFTSEQAIQLAANQ 52 (182)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHHc
Confidence 44567778888888888888877655443
No 235
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=23.98 E-value=56 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=18.5
Q ss_pred CEEEEeeCCCcEEEEEeHHHHHhccccC
Q 030127 117 TGFPVIDDDWKLVGLVSDYDLLALDSIS 144 (182)
Q Consensus 117 ~~lPVvD~~g~lvGiVt~~Dll~~~~~~ 144 (182)
..+-|+|++|..+|+++..+.++.....
T Consensus 8 ~~Vrli~~dG~~lgv~~~~eAl~~A~~~ 35 (165)
T TIGR00168 8 NEVRLIDENGEQLGIVSREEALEIAEEA 35 (165)
T ss_pred CEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 4456677777777777777777654433
No 236
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=23.92 E-value=61 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.2
Q ss_pred cCCCEEEEeeCCCcEEEEEeH
Q 030127 114 KRITGFPVIDDDWKLVGLVSD 134 (182)
Q Consensus 114 ~~~~~lPVvD~~g~lvGiVt~ 134 (182)
.+-+.=|++|.+|+++||.+.
T Consensus 197 ~GnSGGpl~n~~G~vIGI~~~ 217 (351)
T TIGR02038 197 AGNSGGALINTNGELVGINTA 217 (351)
T ss_pred CCCCcceEECCCCeEEEEEee
Confidence 344667999999999999874
No 237
>PRK10638 glutaredoxin 3; Provisional
Probab=23.05 E-value=1.8e+02 Score=19.11 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=10.0
Q ss_pred HHcCCCEEEEeeCCCcEEE
Q 030127 112 VEKRITGFPVIDDDWKLVG 130 (182)
Q Consensus 112 ~~~~~~~lPVvD~~g~lvG 130 (182)
...+...+|++--+|+++|
T Consensus 46 ~~~g~~~vP~i~~~g~~ig 64 (83)
T PRK10638 46 KRSGRTTVPQIFIDAQHIG 64 (83)
T ss_pred HHhCCCCcCEEEECCEEEe
Confidence 3445566666643455444
No 238
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=23.04 E-value=1.8e+02 Score=24.21 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.8
Q ss_pred CEEEEeeCCCcEEEEEeHHHHH
Q 030127 117 TGFPVIDDDWKLVGLVSDYDLL 138 (182)
Q Consensus 117 ~~lPVvD~~g~lvGiVt~~Dll 138 (182)
..+.|+|++++++|..+.+..-
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H 44 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCH 44 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhh
Confidence 4688999999999999987753
No 239
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=22.29 E-value=63 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=9.9
Q ss_pred EEEeeCCCcEEEEE
Q 030127 119 FPVIDDDWKLVGLV 132 (182)
Q Consensus 119 lPVvD~~g~lvGiV 132 (182)
+.=+|++|+++||-
T Consensus 32 ild~d~~G~ivGIE 45 (50)
T PF10049_consen 32 ILDYDEDGRIVGIE 45 (50)
T ss_pred EEEECCCCCEEEEE
Confidence 33347789999983
No 240
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=21.59 E-value=1.1e+02 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.3
Q ss_pred eCCCcEEEEEeHHHHHhcc
Q 030127 123 DDDWKLVGLVSDYDLLALD 141 (182)
Q Consensus 123 D~~g~lvGiVt~~Dll~~~ 141 (182)
+++|++.|-||..||....
T Consensus 84 ge~gklfGSVt~~~I~~~l 102 (148)
T TIGR00158 84 GDEGKLFGSITTKQIADAL 102 (148)
T ss_pred CCCCeEEEeECHHHHHHHH
Confidence 4567788888888876544
No 241
>PRK10898 serine endoprotease; Provisional
Probab=21.31 E-value=74 Score=27.65 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=17.8
Q ss_pred HcCCCEEEEeeCCCcEEEEEeH
Q 030127 113 EKRITGFPVIDDDWKLVGLVSD 134 (182)
Q Consensus 113 ~~~~~~lPVvD~~g~lvGiVt~ 134 (182)
..+-+.=|++|.+|+++||.+.
T Consensus 196 ~~GnSGGPl~n~~G~vvGI~~~ 217 (353)
T PRK10898 196 NHGNSGGALVNSLGELMGINTL 217 (353)
T ss_pred CCCCCcceEECCCCeEEEEEEE
Confidence 3455677999999999999874
No 242
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.68 E-value=1.3e+02 Score=18.90 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=31.2
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeeCCCcEEEEEeHHHHHh
Q 030127 99 KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139 (182)
Q Consensus 99 ~~~~tl~ea~~~m~~~~~~~lPVvD~~g~lvGiVt~~Dll~ 139 (182)
....++.+.++...+.++..+-+.|. +.+-|.....++.+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh-~~~~~~~~~~~~~~ 51 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDH-GNLFGAVEFYKAAK 51 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeC-CcccCHHHHHHHHH
Confidence 45678999999999999999999994 56777665555443
Done!