Query 030128
Match_columns 182
No_of_seqs 119 out of 923
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_E 60S ribosomal protein L 100.0 7.2E-75 2.5E-79 474.4 13.1 177 1-177 1-177 (180)
2 4a17_D L21, RPL11, 60S ribosom 100.0 3.6E-73 1.2E-77 461.6 14.4 168 7-174 5-172 (172)
3 1vq8_D 50S ribosomal protein L 100.0 1.5E-70 5E-75 448.3 12.3 169 4-174 7-176 (177)
4 3j21_E 50S ribosomal protein L 100.0 8.9E-71 3.1E-75 452.5 10.2 171 5-175 14-185 (186)
5 2zkr_d 60S ribosomal protein L 100.0 9.7E-70 3.3E-74 444.0 10.6 174 4-177 5-178 (178)
6 3r8s_F 50S ribosomal protein L 100.0 5.5E-55 1.9E-59 356.6 12.0 135 4-138 18-162 (177)
7 1iq4_A 50S ribosomal protein L 100.0 7.4E-55 2.5E-59 356.4 12.2 135 4-138 19-163 (179)
8 1mji_A 50S ribosomal protein L 100.0 1.1E-54 3.9E-59 356.0 12.6 136 3-138 21-166 (182)
9 3bbo_H Ribosomal protein L5; l 100.0 1.5E-53 5.2E-58 357.6 10.0 140 3-142 33-182 (220)
10 2nrq_A Hypothetical protein OR 25.5 1.4E+02 0.0049 23.0 5.8 87 63-169 49-146 (159)
No 1
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=100.00 E-value=7.2e-75 Score=474.38 Aligned_cols=177 Identities=92% Similarity=1.410 Sum_probs=168.5
Q ss_pred CCCCcccCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030128 1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 1 ~~~~~~~~n~m~iP~I~KIvin~gvg~~~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~ 80 (182)
|++|...+|||++|+|+|||||+|+|++++.|+.|..+|++||||+|++|+||++|++||||+||||||+|||||++||+
T Consensus 1 ~~~~~~~~n~m~vPkI~KIvlN~gvGea~~~L~~A~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~m~e 80 (180)
T 3iz5_E 1 MSTEKKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTIRGEKAMQ 80 (180)
T ss_dssp CCCCTTTCCTTSSCEEEEEEEEEECCTTTSCSSTHHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHH
T ss_pred CCcccccCCCccCcEEEEEEEEcCCchhHHHHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEEEEEccHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHH
Q 030128 81 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED 160 (182)
Q Consensus 81 FL~klirirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~h~v~~~e 160 (182)
||+||+|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|||++||||+++|++++++||.+|||++||
T Consensus 81 FL~klirirdf~l~~~sFD~~GN~sfGI~E~i~Fei~yD~~~~i~GmdI~ivt~RpG~rv~~r~~~~~~i~~~hrv~kee 160 (180)
T 3iz5_E 81 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPSTGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKED 160 (180)
T ss_dssp HHHHHHHSSCSCCCSTTBCTTSCEEEECCTTSSSCCSSSCSCCCCCCEEEEEEECGGGHHHHSSSSCCCCCTTTSCCHHH
T ss_pred HHHHHHhhhhcccCccccCCCceeeeccchheeeecccccccCccceeEEEEEcCCccchhhcccccCCCCccceeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccEEEecCc
Q 030128 161 AMKWFQVKYEGVILNKS 177 (182)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (182)
||+|||++||++|+|+.
T Consensus 161 a~~~~~~~~~~~i~~~~ 177 (180)
T 3iz5_E 161 AMKWFQVKYEGVILNKS 177 (180)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHHhcCEEEcccC
Confidence 99999999999999864
No 2
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=100.00 E-value=3.6e-73 Score=461.65 Aligned_cols=168 Identities=67% Similarity=1.113 Sum_probs=165.9
Q ss_pred cCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHHhh
Q 030128 7 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL 86 (182)
Q Consensus 7 ~~n~m~iP~I~KIvin~gvg~~~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~FL~kli 86 (182)
.+|||++|+|+|||||+|+|+|++.|+.|..+|++||||+|++|+||++|++||||+||||||+|||||++||+||+||+
T Consensus 5 ~~n~m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g~pIG~kVTLRG~~m~eFL~kll 84 (172)
T 4a17_D 5 KENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGL 84 (172)
T ss_dssp CCCGGGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSSEEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCcccCcEEEEEEEEcCcHHHHHHHHHHHHHHHHccCCccEEEEeccccccccccCCCEEEEEEEEccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHHHhH
Q 030128 87 KVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQ 166 (182)
Q Consensus 87 rirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~h~v~~~e~~~~~~ 166 (182)
|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|||++||||+++|++++++||++|||++||||+|||
T Consensus 85 rirdf~l~~~sFD~~GN~sfGi~e~i~Fei~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~keea~~~~~ 164 (172)
T 4a17_D 85 KVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFK 164 (172)
T ss_dssp HHTTTEECGGGBCTTSCEEEEECCGGGGTCCCCGGGCCCCEEEEEEEECGGGHHHHCSTTCCCCCTTTSCCHHHHHHHHH
T ss_pred hhhhccCCCcCcCCCceEEEccccccccccccccccCccceeEEEEEcCCccchhhcccccCCCCccceeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccEEEe
Q 030128 167 VKYEGVIL 174 (182)
Q Consensus 167 ~~~~~~~~ 174 (182)
++||++++
T Consensus 165 ~~~~~~~~ 172 (172)
T 4a17_D 165 TEFEGNVY 172 (172)
T ss_dssp HHHCCEEC
T ss_pred HhcCeEeC
Confidence 99999985
No 3
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=1.5e-70 Score=448.35 Aligned_cols=169 Identities=37% Similarity=0.676 Sum_probs=139.1
Q ss_pred CcccCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHH
Q 030128 4 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE 83 (182)
Q Consensus 4 ~~~~~n~m~iP~I~KIvin~gvg~~~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~FL~ 83 (182)
+.+++|+|++|+|+||+||+|+|++.+.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+||+
T Consensus 7 ~~~~~N~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL~ 86 (177)
T 1vq8_D 7 SGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQ 86 (177)
T ss_dssp ----CCTTTSCEEEEEEEEEECCC-----CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHH
T ss_pred ccccCCchhcCEEEEEEEEcCcchHHHHHHHHHHHHHHHhCCCcEEEecccccccccccCCCeeEEEEEEccHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHH
Q 030128 84 SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAM 162 (182)
Q Consensus 84 klirirdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~h~v~~~e~~ 162 (182)
||++++| |+.++||++|||+|||+||++| |++||++++++||||+|||+|||||+++|+|++++||.+|||++||||
T Consensus 87 rllrvrd--l~~~sfd~~GN~sfGi~e~i~FPEI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hr~~k~ea~ 164 (177)
T 1vq8_D 87 TALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAV 164 (177)
T ss_dssp HHGGGSC--CCGGGBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCGGGSCCHHHHH
T ss_pred HHHHhcc--CCccccCCCceEEEecceeecCccccccccCCcccceEEEEeCCCccchhhhhhccccCCCCcEeCHHHHH
Confidence 9999999 9999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhccEEEe
Q 030128 163 KWFQVKYEGVIL 174 (182)
Q Consensus 163 ~~~~~~~~~~~~ 174 (182)
+|||++||++|+
T Consensus 165 ~~~~~~~~~~i~ 176 (177)
T 1vq8_D 165 AFIESTYDVEVS 176 (177)
T ss_dssp HHHHTTTSCCC-
T ss_pred HHHHHhcCEEEe
Confidence 999999999986
No 4
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.9e-71 Score=452.46 Aligned_cols=171 Identities=45% Similarity=0.783 Sum_probs=167.8
Q ss_pred cccCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHHH
Q 030128 5 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES 84 (182)
Q Consensus 5 ~~~~n~m~iP~I~KIvin~gvg~~~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~FL~k 84 (182)
.|++|+|++|+|+||+||+|+|+|++.|..|..+|++||||+|++|+||+++++||||+|||+||+|||||++||+||+|
T Consensus 14 ~~~~N~m~vPkI~KIvlN~gvgea~~~L~~a~~~Le~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL~r 93 (186)
T 3j21_E 14 DWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKR 93 (186)
T ss_dssp HHHHCTTSSCEEEEEEEEECSCCCTTSCCSHHHHHHHHHSSCCEEECCCSCCSSSCCSTTCCCEEEEEECSHHHHHHHHH
T ss_pred hccCCchhccEeeEEEEEcCcchHHHHHHHHHHHHHHhhCCCcEEEEccccccccCcCCCCceeeEEEEcChhHHHHHHH
Confidence 57899999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030128 85 GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 85 lirirdf~l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~h~v~~~e~~~ 163 (182)
|+.+.||.|+.++||++|||+|||+||++| |++|||+++++||||+|||+|||||+++|+++++|||++||||+||||+
T Consensus 94 ll~v~d~gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~keea~~ 173 (186)
T 3j21_E 94 LLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMV 173 (186)
T ss_dssp HHHHSCSSBCSSSBCTTSCEEECCCSCCCCTTTSSCSSCCCCCCEEEEEEECSTTHHHHSSTTCCCCCSTTSCCHHHHHH
T ss_pred HHHHhccCCCccccCCCceEEEcCcceeecccccccccccccceeEEEEecCCcceeeecccccCcCCcceeeCHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEec
Q 030128 164 WFQVKYEGVILN 175 (182)
Q Consensus 164 ~~~~~~~~~~~~ 175 (182)
|||++||++|+.
T Consensus 174 ~~~~~~~~~v~~ 185 (186)
T 3j21_E 174 YMMEEFGVEIVE 185 (186)
T ss_dssp HHHHHSSCBCCB
T ss_pred HHHHHcCEEEec
Confidence 999999999874
No 5
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.7e-70 Score=443.98 Aligned_cols=174 Identities=70% Similarity=1.151 Sum_probs=163.9
Q ss_pred CcccCCCCCceeeeEEEEEccCCchhHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHHHHH
Q 030128 4 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE 83 (182)
Q Consensus 4 ~~~~~n~m~iP~I~KIvin~gvg~~~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~FL~ 83 (182)
..+++|+|++|+|+||+||+|+|++.+.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+||+
T Consensus 5 ~~~~~n~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~myeFL~ 84 (178)
T 2zkr_d 5 QGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILE 84 (178)
T ss_dssp -----CTTTSCEEEEEEEEECCSSSCSSSCTTHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHHHHH
T ss_pred ccccCCcccccEEEEEEEECCchhHHHHHHHHHHHHHHHhCCCeEEEecccccccccccCCCEEEEEEEEccHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCCCceeEEecccccccccccccCCCCccccEEEEEeecccceeeeeccccCCCCCCcccChHHHHH
Q 030128 84 SGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 163 (182)
Q Consensus 84 klirirdf~l~~~sfD~~GN~sfGi~e~~~FEi~yd~~~~i~GmdItivt~a~g~r~a~r~~~~~~i~~~h~v~~~e~~~ 163 (182)
||+.+|||+|+.++||++|||+|||+||++||++||++++++||||+||++++|++.++|++++++||.+|||++||||+
T Consensus 85 rll~vrdf~l~~~sfd~~GN~sfGi~E~i~FEi~yD~~~~i~GmdItivL~~~G~pf~~r~~~~~~i~~~hr~~k~e~~~ 164 (178)
T 2zkr_d 85 KGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMR 164 (178)
T ss_dssp HHHHHSCSCBCTTTBCTTSCEEESSSSCSSSSCCCSSSCCSSCEEEEEEEECTTTHHHHSSSSCCCCCTTTSCCHHHHHH
T ss_pred HHHhhccccccccCcCCCceEEEecchheeeeeeecccCCccCccEEEEEcCCCcEEeecccccccCCCCceECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhccEEEecCc
Q 030128 164 WFQVKYEGVILNKS 177 (182)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (182)
|||++||++|+|.+
T Consensus 165 ~~~~~~~~~i~~~~ 178 (178)
T 2zkr_d 165 WFQQKYDGIILPGK 178 (178)
T ss_dssp HHHTTTCCBC----
T ss_pred HHHHhCCEEEecCC
Confidence 99999999999754
No 6
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=100.00 E-value=5.5e-55 Score=356.60 Aligned_cols=135 Identities=31% Similarity=0.560 Sum_probs=130.6
Q ss_pred CcccCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030128 4 EKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~~~n~m~iP~I~KIvin~gvg~~~---~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~ 80 (182)
+.+|+|+|++|+|+||+||+|+|++. +.|..|..+|++||||+|++|+||+||++||||+||||||+|||||++||+
T Consensus 18 ~~~y~N~m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksi~~FkiR~g~piG~kVTLRg~~m~~ 97 (177)
T 3r8s_F 18 EFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWE 97 (177)
T ss_dssp HHTCSSTTSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBCTTCEEEEEEEECSHHHHH
T ss_pred hhCCCCccccceeeEEEEEecCchhhhCHHHHHHHHHHHHHhhCCCceEeecccccccCCCCCCCEeeEEEEEccHHHHH
Confidence 56899999999999999999999984 489999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030128 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~ 138 (182)
||+||+ |+|||+ |+.++||++|||+|||+||++| |++||++++++||||+|||+|+++
T Consensus 98 FL~kli~~vlPrirdf~Gl~~~sfd~~GN~~fGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td 162 (177)
T 3r8s_F 98 FFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSD 162 (177)
T ss_dssp HHHHHHHTTTTTSTTCCCCCTTCBCSSSCEECCCSCGGGSSSSCSSSCCSCCCCBCEEEESCSSH
T ss_pred HHHHHHHHhccccccccccCccccCCCceEeeeccccccCCCccccccCCccceeEEEEeCcCCH
Confidence 999999 899999 9999999999999999999999 999999999999999999999764
No 7
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=7.4e-55 Score=356.38 Aligned_cols=135 Identities=26% Similarity=0.536 Sum_probs=130.7
Q ss_pred CcccCCCCCceeeeEEEEEccCCch---hHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHHH
Q 030128 4 EKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 80 (182)
Q Consensus 4 ~~~~~n~m~iP~I~KIvin~gvg~~---~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my~ 80 (182)
+.+|+|+|++|+|+||+||+|+|++ .+.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+
T Consensus 19 k~~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my~ 98 (179)
T 1iq4_A 19 KFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYE 98 (179)
T ss_dssp HHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCCTTCEEEEEEEECHHHHHH
T ss_pred HhCCCCcccCceeEEEEEEecCchhhcChHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHHH
Confidence 5689999999999999999999998 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030128 81 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 81 FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~ 138 (182)
||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|||+|+++
T Consensus 99 FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td 163 (179)
T 1iq4_A 99 FLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTD 163 (179)
T ss_dssp HHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESCSSH
T ss_pred HHHHHHHHhcccccccccCCccccCCCceEEEecchhhcCccccccccCCccCceEEEEeeeCCH
Confidence 999999 789999 9999999999999999999999 999999999999999999999863
No 8
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00 E-value=1.1e-54 Score=356.05 Aligned_cols=136 Identities=27% Similarity=0.475 Sum_probs=131.2
Q ss_pred CCcccCCCCCceeeeEEEEEccCCch---hHHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHH
Q 030128 3 SEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAM 79 (182)
Q Consensus 3 ~~~~~~n~m~iP~I~KIvin~gvg~~---~~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my 79 (182)
.+.+|+|+|++|+|+||+||+|+|++ .+.|+.|..+|++||||+|++|+||+||++||||+||||||||||||++||
T Consensus 21 ~kf~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my 100 (182)
T 1mji_A 21 RRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMW 100 (182)
T ss_dssp HHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSSSCCSEEEEEEEECHHHHH
T ss_pred HHhCCCCcccCceeeEEEEEcCCchhhhChHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHH
Confidence 35789999999999999999999998 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccc
Q 030128 80 QLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 138 (182)
Q Consensus 80 ~FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~ 138 (182)
+||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|||+|+++
T Consensus 101 ~FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdItivtta~td 166 (182)
T 1mji_A 101 IFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETD 166 (182)
T ss_dssp HHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEESCSSH
T ss_pred HHHHHHHHHhccccccccccCccccCCCceEEEecchhhcCCcccccccCCccCceEEEEeccCCH
Confidence 9999999 789999 9999999999999999999999 999999999999999999999863
No 9
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=1.5e-53 Score=357.58 Aligned_cols=140 Identities=24% Similarity=0.393 Sum_probs=133.1
Q ss_pred CCcccCCCCCceeeeEEEEEccCCchh---HHHHHHHHHHHHHhCCCceeeeeeccccCceeeeCceEEEEEEEcCchHH
Q 030128 3 SEKKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAM 79 (182)
Q Consensus 3 ~~~~~~n~m~iP~I~KIvin~gvg~~~---~~L~~a~~~L~~ITGQkp~~t~AKksia~FkiRkG~piG~kVTLRg~~my 79 (182)
.+.+|+|+|++|+|+||+||+|+|++. +.|+.|..+|++||||+|++|+||++|++||||+||||||+|||||++||
T Consensus 33 ~k~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv~tkAKksIa~FkiRkg~pIG~kVTLRG~~My 112 (220)
T 3bbo_H 33 EEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMY 112 (220)
T ss_dssp HSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCCSSCCCTTCBCCCCCEECTHHHH
T ss_pred HHhcCCCcccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcEEeecccccccccccCCCeeEEEEEEccHHHH
Confidence 367899999999999999999999985 48999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----cccccc-cccCCCCCceeEEecccccccc-cccccCCCCccccEEEEEeecccceeee
Q 030128 80 QLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 142 (182)
Q Consensus 80 ~FL~kli-----rirdf~-l~~~sfD~~GN~sfGi~e~~~F-Ei~yd~~~~i~GmdItivt~a~g~r~a~ 142 (182)
+||+||+ |+|||+ |+.++||++|||+|||+||++| |++||++++++||||+|||+|+++..++
T Consensus 113 eFLdrll~iaLPRirdf~Gl~~~sFD~~GN~sfGi~e~~~FPEI~yD~~~~i~GmdItivTtA~td~ea~ 182 (220)
T 3bbo_H 113 SFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAY 182 (220)
T ss_dssp HHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEEEEESCSSGGGTH
T ss_pred HHHHHHHHHhccccccccccCccccCCCceEEEeccccccCCCcccCccCCcccceEEEEeccCCHHHHH
Confidence 9999999 789999 9999999999999999999999 9999999999999999999998754443
No 10
>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=25.46 E-value=1.4e+02 Score=22.95 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=55.0
Q ss_pred eCceEE-EEEEEcCchHHHHHHHhh-ccc--ccc-cccCC---CCCceeEEecccccc-cc--cccccCCCCccccEEEE
Q 030128 63 RNEKIA-CYVTVRGDKAMQLLESGL-KVK--EYE-LLRRN---FSDTGCFGFGIQEHI-DL--GIKYDPSTGIYGMDFFV 131 (182)
Q Consensus 63 kG~piG-~kVTLRg~~my~FL~kli-rir--df~-l~~~s---fD~~GN~sfGi~e~~-~F--Ei~yd~~~~i~GmdIti 131 (182)
-|.|+. +.+.|.++.+..||++|. .++ |.. +...- .|+ |.+.|=++=|. .| .+.+....+. |.|
T Consensus 49 ~Gn~I~il~~~i~~~~~~~~l~~l~~ll~~~~~~~l~~~l~~r~~~-~~l~lrldKQa~Ay~G~v~~~dgdd~----I~v 123 (159)
T 2nrq_A 49 YGNKIIILEYRFDRKSGEQFFKIILEKIETSELMLILTTIDSHIDG-SKLYLRFDKQYLIAEHRLVLKEGDDV----IKC 123 (159)
T ss_dssp SSCEEEEEEEEECHHHHHHHHHHHHTTSCHHHHHHHHTC--CCEET-TEEEEEECHHHHHHHSCCCBCCSSSS----EEE
T ss_pred ecCcEEEEEEEEcchhHHHHHHHHHHHhhHHHHHHHHHHHHhceeC-CEEEEEEcChHHHhCCeEEeecCCCc----EEE
Confidence 378887 588899999999999999 343 333 22221 233 67889999887 77 4665422222 666
Q ss_pred EeecccceeeeeccccCCCCCCcccChHHHHHHhHhhc
Q 030128 132 VLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKY 169 (182)
Q Consensus 132 vt~a~g~r~a~r~~~~~~i~~~h~v~~~e~~~~~~~~~ 169 (182)
...-++|.. + -.|++.+|+....
T Consensus 124 ~I~~~~y~~------------k---~~e~~r~~~~~~~ 146 (159)
T 2nrq_A 124 IISFNTSLE------------N---IKEEIKKLVNSRI 146 (159)
T ss_dssp EEECSCC--------------C---HHHHHHHHHHHHC
T ss_pred EEEeccchH------------H---HHHHHHHHHHhhh
Confidence 666666621 1 5677777877654
Done!