RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030128
(182 letters)
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 165 bits (418), Expect = 3e-53
Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 9 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
+ MRE +++K+V+++ +G G L A +L +++GQ PV +KA+ TV F IR + I
Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 61
Query: 69 CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID-LGIKYDPSTGIYGM 127
VT+R + A + L++ L + E L F DTG F FG++EH + +YDPS GIYG+
Sbjct: 62 AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 119
Query: 128 DFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYE 170
D V L RPGYRV +R + + +HR+ DA+ + + Y+
Sbjct: 120 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 162
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 97.3 bits (242), Expect = 2e-26
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 1 MASEKKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVR 57
+ S+ + M+ K++K+V+N+ VG++ L A + L ++GQ PV ++A+ ++
Sbjct: 16 LMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIA 75
Query: 58 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE------LLRRNFSDTGCFGFGIQEH 111
F +R+ I VT+RG++ + L+ + V + +++F G + GI+E
Sbjct: 76 GFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQ 135
Query: 112 IDL-GIKYDPSTGIYGMDFFVVL 133
+ I YD + GMD +V
Sbjct: 136 LIFPEIDYDKVNKVRGMDIVIVT 158
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 97.3 bits (242), Expect = 2e-26
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 1 MASEKKLSNPMREIKVQKLVLNISVG---ESGDRLTRAAKVLEQLSGQTPVFSKARYTVR 57
+ + S+ M +++K+V+N +G E + +AAK L ++ Q P+ +KA+ ++
Sbjct: 14 LMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSIS 73
Query: 58 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLR------RNFSDTGCFGFGIQEH 111
+F +R+ + VT+RG++ LE + + + F G + GI+E
Sbjct: 74 NFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQ 133
Query: 112 IDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRR 143
+ I YD GMD +V R
Sbjct: 134 LIFPEITYDMVDKTRGMDITIVTTAKTDEEARA 166
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 95.4 bits (237), Expect = 8e-26
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 1 MASEKKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVR 57
+ N +++K+V+N +GE+ + L +AA+ L ++GQ P ++A+ ++
Sbjct: 17 LIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSIS 76
Query: 58 SFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLRRNFSD-TGCFGFGIQEH 111
+F +R+ I VT+R D+ LE L +++++ L N D G + G++E
Sbjct: 77 NFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQ 136
Query: 112 IDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 142
+ I YD + GMD VV R
Sbjct: 137 LIFPEITYDMVDALRGMDIAVVTTAETDEEAR 168
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 81.6 bits (201), Expect = 2e-20
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 1 MASEKKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVR 57
+ +E ++ M+ +V+K+ LN+ VGE+ L AA L +SGQ P+ +KAR +V
Sbjct: 14 LMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVA 73
Query: 58 SFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE------LLRRNFSDTGCFGFGIQEH 111
F IR+ I C VT+RG++ + E + + L ++F G + G++E
Sbjct: 74 GFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQ 133
Query: 112 IDL-GIKYDPSTGIYGMDFFVV 132
I I YD + G+D +
Sbjct: 134 IIFPEIDYDKVDRVRGLDITIT 155
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 26.7 bits (59), Expect = 1.9
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 83 ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGR 142
+K E+ + +F+ + +++ KYDP IY D +V+ GY + +
Sbjct: 134 TEQIKQVEFNTVSVSFAGLSEKVDRLHSYLNRANKYDPKGPIYN-DQNMVISDSGYLLSK 192
Query: 143 RRRCK------SRVGIQHRVTKEDAMKWF 165
+ IQ +T E + +
Sbjct: 193 ALAKAVESYKSQQKKIQQLLTDEGVLGKY 221
>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription
repressor HrcA, C-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 236
Score = 25.3 bits (55), Expect = 4.1
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 21 LNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSF 59
++ + + L A +L +L+ + +
Sbjct: 9 KSMPLADPEKVLFLAGNLLARLTEGYVLIERPNTRDLKI 47
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 25.0 bits (54), Expect = 6.8
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 68 ACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 117
+ KA L ++G++ E+ RR Q+ I GI
Sbjct: 5 ENQLEQAEKKAETLFDNGIRFSEFGTRRR-------RSLKAQDLIMQGIM 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.398
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,417
Number of extensions: 31523
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 10
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)