Your job contains 1 sequence.
>030129
MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG
QMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKSALSPMELQRRKLAEQKN
TL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030129
(182 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076259 - symbol:AT3G10330 species:3702 "Arabi... 613 8.1e-60 1
TAIR|locus:2062703 - symbol:TFIIB "transcription factor I... 539 5.6e-52 1
TAIR|locus:2093852 - symbol:pBRP2 "plant-specific TFIIB-r... 276 4.2e-24 1
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 272 1.1e-23 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 262 1.3e-22 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 262 1.3e-22 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 262 1.3e-22 1
UNIPROTKB|B1APE1 - symbol:GTF2B "Transcription initiation... 262 1.3e-22 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 262 1.3e-22 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 262 1.3e-22 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 262 1.3e-22 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 262 1.3e-22 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 261 1.6e-22 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 255 7.0e-22 1
UNIPROTKB|B1APE2 - symbol:GTF2B "Transcription initiation... 235 9.2e-20 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 233 1.5e-19 1
DICTYBASE|DDB_G0290929 - symbol:gtf2b "transcription init... 232 1.9e-19 1
POMBASE|SPAC16E8.16 - symbol:SPAC16E8.16 "transcription f... 218 7.7e-18 1
ASPGD|ASPL0000072123 - symbol:AN4928 species:162425 "Emer... 196 3.2e-15 1
SGD|S000006290 - symbol:SUA7 "Transcription factor TFIIB"... 180 1.9e-13 1
CGD|CAL0001439 - symbol:SUA71 species:5476 "Candida albic... 175 6.7e-13 1
CGD|CAL0005818 - symbol:SUA72 species:5476 "Candida albic... 170 2.5e-12 1
UNIPROTKB|Q59K82 - symbol:SUA72 "Likely transcription fac... 170 2.5e-12 1
TAIR|locus:2157270 - symbol:AT5G39230 species:3702 "Arabi... 128 2.0e-08 1
GENEDB_PFALCIPARUM|PFA0525w - symbol:PFA0525w "transcript... 132 1.3e-07 1
UNIPROTKB|Q8I237 - symbol:PFA_0525w "Transcription initia... 132 1.3e-07 1
TAIR|locus:2139227 - symbol:AT4G10680 species:3702 "Arabi... 112 2.7e-05 1
>TAIR|locus:2076259 [details] [associations]
symbol:AT3G10330 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AC009400 HOGENOM:HOG000108634 KO:K03124
ProtClustDB:CLSN2683788 InterPro:IPR023486 EMBL:AY050421
EMBL:AY060526 EMBL:AY087850 EMBL:Z34661 IPI:IPI00519983
RefSeq:NP_187644.1 UniGene:At.199 ProteinModelPortal:Q9SS44
SMR:Q9SS44 STRING:Q9SS44 PaxDb:Q9SS44 PRIDE:Q9SS44
EnsemblPlants:AT3G10330.1 GeneID:820195 KEGG:ath:AT3G10330
TAIR:At3g10330 InParanoid:Q9SS44 OMA:SNDDQNG PhylomeDB:Q9SS44
Genevestigator:Q9SS44 Uniprot:Q9SS44
Length = 312
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 112/126 (88%), Positives = 123/126 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DR+G
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>TAIR|locus:2062703 [details] [associations]
symbol:TFIIB "transcription factor IIB" species:3702
"Arabidopsis thaliana" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 EMBL:AC002510 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:U31096 EMBL:AY093060 EMBL:AY128769
EMBL:AY086647 IPI:IPI00524047 PIR:T00819 RefSeq:NP_181694.1
UniGene:At.10174 ProteinModelPortal:P48512 SMR:P48512 IntAct:P48512
STRING:P48512 PaxDb:P48512 PRIDE:P48512 EnsemblPlants:AT2G41630.1
GeneID:818761 KEGG:ath:AT2G41630 TAIR:At2g41630
HOGENOM:HOG000108634 InParanoid:P48512 KO:K03124 OMA:WRAFDPD
PhylomeDB:P48512 ProtClustDB:CLSN2683788 Genevestigator:P48512
InterPro:IPR023486 Uniprot:P48512
Length = 312
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 100/126 (79%), Positives = 114/126 (90%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+R+G
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>TAIR|locus:2093852 [details] [associations]
symbol:pBRP2 "plant-specific TFIIB-related protein 2"
species:3702 "Arabidopsis thaliana" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0000769 "syncytium formation by mitosis without cytokinesis"
evidence=IMP] [GO:0009960 "endosperm development" evidence=IMP]
[GO:0010440 "stomatal lineage progression" evidence=RCA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0046686 EMBL:CP002686 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0009960 GO:GO:0003743
EMBL:AP001309 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K03124 HSSP:Q00403
IPI:IPI00533744 RefSeq:NP_189584.1 UniGene:At.36925
ProteinModelPortal:Q9LIA6 SMR:Q9LIA6 STRING:Q9LIA6
EnsemblPlants:AT3G29380.1 GeneID:822598 KEGG:ath:AT3G29380
TAIR:At3g29380 InParanoid:Q9LIA6 OMA:NSRACEI PhylomeDB:Q9LIA6
ProtClustDB:CLSN2913417 ArrayExpress:Q9LIA6 Genevestigator:Q9LIA6
GO:GO:0000769 Uniprot:Q9LIA6
Length = 336
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 60/126 (47%), Positives = 78/126 (61%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLIL-AFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSDRI 119
M+D +
Sbjct: 121 RMTDAL 126
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 59/115 (51%), Positives = 74/115 (64%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRI 127
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|B1APE1 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643469
SMR:B1APE1 STRING:B1APE1 Ensembl:ENST00000448623 Uniprot:B1APE1
Length = 224
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 74 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 132
Query: 125 I 125
I
Sbjct: 133 I 133
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 58/121 (47%), Positives = 74/121 (61%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 5 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 64
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I M+DRI R
Sbjct: 65 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRN 123
Query: 125 I 125
I
Sbjct: 124 I 124
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 57/121 (47%), Positives = 73/121 (60%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L G L+T+I+K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 75 LNGGDLTTMISKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMLNAFKEITTMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>UNIPROTKB|B1APE2 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL445991
HOGENOM:HOG000108634 InterPro:IPR023486 HOVERGEN:HBG017914
UniGene:Hs.481852 HGNC:HGNC:4648 ChiTaRS:GTF2B IPI:IPI00643006
SMR:B1APE2 STRING:B1APE2 Ensembl:ENST00000418217 Uniprot:B1APE2
Length = 231
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 55/121 (45%), Positives = 70/121 (57%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C EC V ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECDRV-----IDVGSEWRTFSNDKATKDPSRVGDSQNPL 69
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DRI R
Sbjct: 70 LSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRN 128
Query: 125 I 125
I
Sbjct: 129 I 129
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/121 (44%), Positives = 68/121 (56%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>DICTYBASE|DDB_G0290929 [details] [associations]
symbol:gtf2b "transcription initiation factor IIB"
species:44689 "Dictyostelium discoideum" [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
dictyBase:DDB_G0290929 GO:GO:0005654 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GenomeReviews:CM000154_GR Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AAFI02000172 GO:GO:0001139
KO:K03124 InterPro:IPR023486 RefSeq:XP_635486.1 HSSP:Q00403
ProteinModelPortal:Q54FD6 SMR:Q54FD6 STRING:Q54FD6
EnsemblProtists:DDB0216283 GeneID:8627902 KEGG:ddi:DDB_G0290929
OMA:VTIRNAY Uniprot:Q54FD6
Length = 325
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 51/119 (42%), Positives = 72/119 (60%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
+C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 22 WCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGP 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 82 INPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
>POMBASE|SPAC16E8.16 [details] [associations]
symbol:SPAC16E8.16 "transcription factor TFIIB"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPAC16E8.16 GO:GO:0005634 EMBL:CU329670
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 PIR:T37796
RefSeq:NP_594229.1 ProteinModelPortal:O13749 SMR:O13749
STRING:O13749 EnsemblFungi:SPAC16E8.16.1 GeneID:2542339
KEGG:spo:SPAC16E8.16 OMA:VLRWRKW OrthoDB:EOG4RZ27R NextBio:20803400
Uniprot:O13749
Length = 340
Score = 218 (81.8 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 53/123 (43%), Positives = 70/123 (56%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVA 79
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRIGQM 122
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D I
Sbjct: 80 NPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISLP 135
Query: 123 RYI 125
+ I
Sbjct: 136 KVI 138
>ASPGD|ASPL0000072123 [details] [associations]
symbol:AN4928 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
EMBL:BN001303 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:AACD01000084 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:VLRWRKW OrthoDB:EOG4RZ27R RefSeq:XP_662532.1
ProteinModelPortal:Q5B3F2 STRING:Q5B3F2
EnsemblFungi:CADANIAT00005470 GeneID:2872725 KEGG:ani:AN4928.2
Uniprot:Q5B3F2
Length = 351
Score = 196 (74.1 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 49/118 (41%), Positives = 65/118 (55%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +ND P RVG TN
Sbjct: 26 CPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDATN 85
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRIG 120
PLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G
Sbjct: 86 PLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFG 139
>SGD|S000006290 [details] [associations]
symbol:SUA7 "Transcription factor TFIIB" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0001129
"TBP-class protein binding RNA polymerase II transcription factor
activity involved in preinitiation complex assembly"
evidence=IMP;IDA] [GO:0001139 "core RNA polymerase II recruiting
transcription factor activity" evidence=IMP;IDA] [GO:0017025
"TBP-class protein binding" evidence=IEA;IDA;IPI] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:2000679 "positive regulation of transcription
regulatory region DNA binding" evidence=IDA] [GO:0001174
"transcriptional start site selection at RNA polymerase II
promoter" evidence=IMP] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
SGD:S000006290 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
EMBL:BK006949 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 EMBL:U51033 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0017025 GO:GO:0000993 GO:GO:2000679
GO:GO:0001139 GO:GO:0001129 GO:GO:0001113 PDB:3K1F PDB:3K7A
PDB:4BBR PDB:4BBS PDBsum:3K1F PDBsum:3K7A PDBsum:4BBR PDBsum:4BBS
GO:GO:0001174 HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486
OMA:SNDDQNG GeneTree:ENSGT00390000006671 OrthoDB:EOG4RZ27R
EMBL:M81380 EMBL:AY693232 PIR:S26707 RefSeq:NP_015411.1
ProteinModelPortal:P29055 SMR:P29055 DIP:DIP-701N IntAct:P29055
MINT:MINT-473341 STRING:P29055 PaxDb:P29055 PeptideAtlas:P29055
EnsemblFungi:YPR086W GeneID:856201 KEGG:sce:YPR086W CYGD:YPR086w
EvolutionaryTrace:P29055 NextBio:981402 Genevestigator:P29055
GermOnline:YPR086W Uniprot:P29055
Length = 345
Score = 180 (68.4 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 46/117 (39%), Positives = 61/117 (52%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>CGD|CAL0001439 [details] [associations]
symbol:SUA71 species:5476 "Candida albicans" [GO:0001139
"core RNA polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0001129 "TBP-class protein binding RNA polymerase II
transcription factor activity involved in preinitiation complex
assembly" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IEA] [GO:0001174 "transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0051123
"RNA polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0001113 "transcriptional open complex formation
at RNA polymerase II promoter" evidence=IEA] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0001439 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 KO:K03124
InterPro:IPR023486 RefSeq:XP_721286.1 RefSeq:XP_721557.1
ProteinModelPortal:Q5AHZ3 STRING:Q5AHZ3 GeneID:3636879
GeneID:3637101 KEGG:cal:CaO19.10577 KEGG:cal:CaO19.3059
Uniprot:Q5AHZ3
Length = 344
Score = 175 (66.7 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 47/118 (39%), Positives = 61/118 (51%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 82 GNPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCD 136
>CGD|CAL0005818 [details] [associations]
symbol:SUA72 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNR 97
N L L+T+I+ PN SG +SL + Q +
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSS-KNSLNKIQQK 115
>UNIPROTKB|Q59K82 [details] [associations]
symbol:SUA72 "Likely transcription factor TFIIB"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000679
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS50114
PROSITE:PS51134 CGD:CAL0005818 EMBL:AACQ01000315 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124
InterPro:IPR023486 RefSeq:XP_710164.1 ProteinModelPortal:Q59K82
STRING:Q59K82 GeneID:3648239 KEGG:cal:CaO19.3519 Uniprot:Q59K82
Length = 346
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 22 CPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDAS 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNR 97
N L L+T+I+ PN SG +SL + Q +
Sbjct: 82 NSLYDTEDLTTMISYAPNSNSGSS-KNSLNKIQQK 115
>TAIR|locus:2157270 [details] [associations]
symbol:AT5G39230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0008270 GO:GO:0006352
PANTHER:PTHR11618 EMBL:AB010694 IPI:IPI00525422 RefSeq:NP_198739.1
UniGene:At.55246 ProteinModelPortal:Q3E7U7 SMR:Q3E7U7
EnsemblPlants:AT5G39230.1 GeneID:833919 KEGG:ath:AT5G39230
TAIR:At5g39230 eggNOG:NOG241571 HOGENOM:HOG000131620 OMA:TICTECG
PhylomeDB:Q3E7U7 ProtClustDB:CLSN2916747 Genevestigator:Q3E7U7
Uniprot:Q3E7U7
Length = 119
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38
C DCKK T+ V D+ +GDT+C+ECGL+L+SH I
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLILDSHYI 38
>GENEDB_PFALCIPARUM|PFA0525w [details] [associations]
symbol:PFA0525w "transcription initiation factor
TFIIB, putative" species:5833 "Plasmodium falciparum" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N+ S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+ L + ST K S + L L N D+ LI AF + + D
Sbjct: 110 DIWLENNLTSTTFIK----SSKKLQH-LNMMTQINKN-DQTLISAFNILKLICD 157
>UNIPROTKB|Q8I237 [details] [associations]
symbol:PFA_0525w "Transcription initiation factor TFIIB,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0006355 GO:GO:0008270 GO:GO:0003743
GO:GO:0006367 Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL844501 KO:K03124 HSSP:Q00403
RefSeq:XP_001351037.1 ProteinModelPortal:Q8I237 PRIDE:Q8I237
EnsemblProtists:PFA0525w:mRNA GeneID:813242 KEGG:pfa:PFA_0525w
HOGENOM:HOG000283789 OMA:YNENISH ProtClustDB:CLSZ2432986
Uniprot:Q8I237
Length = 367
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/114 (33%), Positives = 55/114 (48%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N+ S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+ L + ST K S + L L N D+ LI AF + + D
Sbjct: 110 DIWLENNLTSTTFIK----SSKKLQH-LNMMTQINKN-DQTLISAFNILKLICD 157
>TAIR|locus:2139227 [details] [associations]
symbol:AT4G10680 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0003743
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 EMBL:AL049523 EMBL:AF080119
EMBL:AL161518 KO:K03124 HSSP:P61999 EMBL:AY463604 IPI:IPI00527305
PIR:T01909 RefSeq:NP_192806.1 UniGene:At.33613
ProteinModelPortal:O82494 SMR:O82494 STRING:O82494
EnsemblPlants:AT4G10680.1 GeneID:826661 KEGG:ath:AT4G10680
TAIR:At4g10680 InParanoid:O82494 PhylomeDB:O82494
Genevestigator:O82494 Uniprot:O82494
Length = 182
Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESG 52
D C +CK+ TE V ++ GDT+C ECG V+E++ ID+ T N +SG
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLDGASTNPNLKSG 54
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 182 182 0.00098 109 3 11 22 0.45 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 601 (64 KB)
Total size of DFA: 176 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.50u 0.14s 17.64t Elapsed: 00:00:01
Total cpu time: 17.50u 0.14s 17.64t Elapsed: 00:00:01
Start: Fri May 10 09:48:01 2013 End: Fri May 10 09:48:02 2013