BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030129
(182 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|317106705|dbj|BAJ53205.1| JHL06B08.6 [Jatropha curcas]
Length = 312
Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/126 (92%), Positives = 121/126 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|255588003|ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223525233|gb|EEF27913.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 121/126 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DA+CSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|224138070|ref|XP_002322722.1| predicted protein [Populus trichocarpa]
gi|222867352|gb|EEF04483.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/126 (92%), Positives = 120/126 (95%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLI AFKTIATMSDR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLITAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|449465789|ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
gi|449529834|ref|XP_004171903.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
sativus]
Length = 312
Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/126 (91%), Positives = 121/126 (96%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|297829558|ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
gi|297328501|gb|EFH58920.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 123/126 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DR+G
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 123/126 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DR+G
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|225441886|ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|297739630|emb|CBI29812.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 120/126 (95%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|225464249|ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
gi|296088031|emb|CBI35314.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 113/126 (89%), Positives = 120/126 (95%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFC+DCKK+TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNG SG+FLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|224090077|ref|XP_002308933.1| predicted protein [Populus trichocarpa]
gi|222854909|gb|EEE92456.1| predicted protein [Populus trichocarpa]
Length = 312
Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 114/126 (90%), Positives = 119/126 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M DAFCSDCKKHTEVV DHSAGDTVCSECGLVLESHSIDETSEWR FANESGDNDPVRVG
Sbjct: 1 MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGASG+FLS+SLGRWQNRGSNPDRGLILAFKTIATMSDR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|357509669|ref|XP_003625123.1| Transcription initiation factor IIB [Medicago truncatula]
gi|355500138|gb|AES81341.1| Transcription initiation factor IIB [Medicago truncatula]
Length = 313
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/126 (87%), Positives = 119/126 (94%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGD VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNGASG+FLSSSLGRWQNRGSNPDRGLILAFKTI TM++R+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVPTIK 126
>gi|115480363|ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|18481632|gb|AAL73491.1|AF464908_1 general transcription factor TFIIB [Oryza sativa]
gi|50725809|dbj|BAD33339.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|50726577|dbj|BAD34211.1| Transcription initiation factor IIB [Oryza sativa Japonica Group]
gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa Japonica Group]
gi|125564497|gb|EAZ09877.1| hypothetical protein OsI_32170 [Oryza sativa Indica Group]
gi|125606444|gb|EAZ45480.1| hypothetical protein OsJ_30135 [Oryza sativa Japonica Group]
gi|347737122|gb|AEP20532.1| transcription factor [Oryza sativa Japonica Group]
Length = 312
Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/126 (84%), Positives = 116/126 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|357159642|ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 312
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|242045402|ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
gi|241923949|gb|EER97093.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
Length = 312
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|194695160|gb|ACF81664.1| unknown [Zea mays]
gi|414886465|tpg|DAA62479.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 312
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|351724605|ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
gi|1351222|sp|P48513.1|TF2B_SOYBN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|945087|gb|AAB09756.1| transcription factor TFIIB [Glycine max]
Length = 313
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 116/127 (91%), Gaps = 1/127 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
GP+NPLL DGGLSTVIAKPN G GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDR+
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GQMRYIR 126
G + I+
Sbjct: 121 GLVATIK 127
>gi|226503255|ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
gi|195629762|gb|ACG36522.1| transcription initiation factor IIB [Zea mays]
gi|414590059|tpg|DAA40630.1| TPA: transcription initiation factor IIB [Zea mays]
Length = 312
Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 116/126 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|326531378|dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 312
Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D +C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|255544920|ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223547429|gb|EEF48924.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 312
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 106/126 (84%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D +C DCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES DNDPVRVG
Sbjct: 1 MADTYCPDCKRPTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLLADGGLSTVI+KP GASG+FL+SSLGRWQNRGSNPDR LI AFKTIATMSDR+G
Sbjct: 61 GPSNPLLADGGLSTVISKPTGASGDFLTSSLGRWQNRGSNPDRSLIQAFKTIATMSDRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|414590060|tpg|DAA40631.1| TPA: hypothetical protein ZEAMMB73_839050 [Zea mays]
Length = 330
Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 103/126 (81%), Positives = 116/126 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|212721546|ref|NP_001131844.1| uncharacterized protein LOC100193219 [Zea mays]
gi|194692694|gb|ACF80431.1| unknown [Zea mays]
gi|414886464|tpg|DAA62478.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 136
Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 115/126 (91%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|356500515|ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 314
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/128 (85%), Positives = 117/128 (91%), Gaps = 2/128 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN--GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLL DGGLSTVIAKPN G GEFLSSSLGRWQNRGSNPDR LI+AFKTIATMSDR
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGGEFLSSSLGRWQNRGSNPDRALIIAFKTIATMSDR 120
Query: 119 IGQMRYIR 126
+G + I+
Sbjct: 121 LGLVATIK 128
>gi|148907440|gb|ABR16853.1| unknown [Picea sitchensis]
Length = 313
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/121 (85%), Positives = 112/121 (92%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK TEVVFDHSAGDTVC ECGLVLE+HSIDETSEWRTFANE+GDNDPVRVGGP+NP
Sbjct: 7 CPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
LL DGGLSTVI+KPNGASG+FLSSSLGRWQNRGSNPDR LI+AFKTI TMSDR+G + I
Sbjct: 67 LLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATI 126
Query: 126 R 126
+
Sbjct: 127 K 127
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/115 (89%), Positives = 112/115 (97%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG
Sbjct: 1 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 60
Query: 72 LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYIR 126
L+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DR+G + I+
Sbjct: 61 LTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIK 115
>gi|223975949|gb|ACN32162.1| unknown [Zea mays]
gi|414886467|tpg|DAA62481.1| TPA: hypothetical protein ZEAMMB73_928076 [Zea mays]
Length = 144
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/118 (86%), Positives = 110/118 (93%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGD VC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDMVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GPTNPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRGSNPDR LILAF+TIA M+DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADR 118
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 113/126 (89%), Gaps = 6/126 (4%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M++ FCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSETFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNG SGEFLSSS+GRWQN RGLI+AFKTIATMSDR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGGSGEFLSSSVGRWQN------RGLIVAFKTIATMSDRLG 114
Query: 121 QMRYIR 126
+ I+
Sbjct: 115 LVATIK 120
>gi|15227397|ref|NP_181694.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
gi|1351221|sp|P48512.1|TF2B1_ARATH RecName: Full=Transcription initiation factor IIB-1; AltName:
Full=General transcription factor TFIIB-1;
Short=AtTFIIB1
gi|945085|gb|AAB09755.1| transcription factor TFIIB [Arabidopsis thaliana]
gi|2618697|gb|AAB84344.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|20260322|gb|AAM13059.1| transcription factor IIB [Arabidopsis thaliana]
gi|21554842|gb|AAM63705.1| transcription factor IIB (TFIIB) [Arabidopsis thaliana]
gi|22136182|gb|AAM91169.1| transcription factor IIB [Arabidopsis thaliana]
gi|39545878|gb|AAR28002.1| TFIIB1 [Arabidopsis thaliana]
gi|330254915|gb|AEC10009.1| transcription initiation factor IIB-1 [Arabidopsis thaliana]
Length = 312
Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 114/126 (90%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+R+G
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|297827809|ref|XP_002881787.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
gi|297327626|gb|EFH58046.1| hypothetical protein ARALYDRAFT_903484 [Arabidopsis lyrata subsp.
lyrata]
Length = 312
Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 114/126 (90%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+R+G
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>gi|225436547|ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
gi|297734946|emb|CBI17180.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/128 (78%), Positives = 113/128 (88%), Gaps = 2/128 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
MTD +C +CK++TEVV DHSAGDTVCSECGLVLE+HSIDE SEWRTFANES DNDPVRVG
Sbjct: 1 MTDTYCPECKRYTEVVLDHSAGDTVCSECGLVLEAHSIDEASEWRTFANESADNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN--GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
GP+NPLLADGGLST+I+KP+ G S +FLSSSLGRWQNRGSNPDR LI AFKTIATM DR
Sbjct: 61 GPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMCDR 120
Query: 119 IGQMRYIR 126
+G + I+
Sbjct: 121 LGLVATIK 128
>gi|356570450|ref|XP_003553400.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
Length = 296
Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/122 (78%), Positives = 104/122 (85%), Gaps = 6/122 (4%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKP+G S EFLSSSLGRWQ+R N GL +AT+ DR
Sbjct: 61 GPTNPLLTDGGLSTVIAKPSGGSSEFLSSSLGRWQSRVKNFRLGL------VATIKDRAN 114
Query: 121 QM 122
++
Sbjct: 115 EI 116
>gi|224135681|ref|XP_002322134.1| predicted protein [Populus trichocarpa]
gi|222869130|gb|EEF06261.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 107/126 (84%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C DCK+ TE+VFDHSAGDT+CSECGL+LE+HS+DETSEWRTF+NES D+DP RVG
Sbjct: 1 MEDSYCPDCKRLTEIVFDHSAGDTICSECGLILEAHSVDETSEWRTFSNESSDHDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP NPLLADGGLST I+K NG S E LS SLG+WQ+RG+NPDR I AFK+IA M+DR+G
Sbjct: 61 GPLNPLLADGGLSTTISKTNGGSNELLSCSLGKWQSRGANPDRNRIQAFKSIAAMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVTTIK 126
>gi|168039347|ref|XP_001772159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676490|gb|EDQ62972.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 106/126 (84%), Gaps = 2/126 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C +C+K TEVV DH+AGD VC+ECGLVLE HS+DE+SEWRTF+ +S +DPVRVG
Sbjct: 1 MNKTVCPECRKATEVVVDHAAGDMVCAECGLVLEQHSVDESSEWRTFS-DSTSSDPVRVG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLST+I+KPNGA G+F+ SSLGRWQNRGSNPDR LI+AF++I TM+DR+G
Sbjct: 60 GPSNPLLTDGGLSTIISKPNGAQGDFM-SSLGRWQNRGSNPDRSLIIAFRSIGTMADRLG 118
Query: 121 QMRYIR 126
+ I+
Sbjct: 119 LVSTIK 124
>gi|414872963|tpg|DAA51520.1| TPA: hypothetical protein ZEAMMB73_142786, partial [Zea mays]
Length = 98
Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 91/98 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D++C DCKK TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTF NES DNDPVRVG
Sbjct: 1 MSDSYCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFTNESNDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG 98
GP+NPLL DGGLSTVIAKPNGA G+FLSSSLGRWQNRG
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRG 98
>gi|302766794|ref|XP_002966817.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
gi|300164808|gb|EFJ31416.1| hypothetical protein SELMODRAFT_87129 [Selaginella moellendorffii]
Length = 310
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 103/126 (81%), Gaps = 2/126 (1%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGLVLE+H IDE+SEWRTF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLVLEAHFIDESSEWRTFSDDSGSNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DR+G
Sbjct: 61 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 118
Query: 121 QMRYIR 126
+ I+
Sbjct: 119 LVSTIK 124
>gi|147790475|emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
Length = 312
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/97 (80%), Positives = 85/97 (87%)
Query: 30 GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSS 89
GL + +TSEWRTFANESGDNDPVRVGGP+NPLL DGGLSTVIAKPNG SG+FLSS
Sbjct: 30 GLCWSLTRLMQTSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGVSGDFLSS 89
Query: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYIR 126
SLGRWQNRGSNPDRGLILAFKTIATMSDR+G + I+
Sbjct: 90 SLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIK 126
>gi|302755524|ref|XP_002961186.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
gi|300172125|gb|EFJ38725.1| hypothetical protein SELMODRAFT_266576 [Selaginella moellendorffii]
Length = 300
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 91/126 (72%), Gaps = 12/126 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M C DC++ ++V DH+AGDTVC ECGL+ TF+++SG NDPVRVG
Sbjct: 1 MQKTVCPDCRREVDIVVDHAAGDTVCMECGLL----------RMETFSDDSGSNDPVRVG 50
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLL DGGLST I++ NG+ G++ ++LG+WQN G+NPDR L+LAFKTI TM+DR+G
Sbjct: 51 GPSNPLLTDGGLSTTISRGNGSQGDY--AALGKWQNHGTNPDRALLLAFKTIGTMADRLG 108
Query: 121 QMRYIR 126
+ I+
Sbjct: 109 LVSTIK 114
>gi|168012200|ref|XP_001758790.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689927|gb|EDQ76296.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 312
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 8/157 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + CS+C+K T+VV D +AGD +C+ECGLVLE S+DET EWR FA+ S D R+G
Sbjct: 1 MYETVCSECRKVTQVVEDRAAGDVLCAECGLVLEQRSVDETREWRWFAD-SSSIDRERIG 59
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GP+NPLLADGGLS+ I+K NGA G+ +SS L R G PD+ I+AF++I M+DR+G
Sbjct: 60 GPSNPLLADGGLSSFISKSNGAQGDVMSSIL-RQSKLGLIPDQSRIIAFRSIGNMADRLG 118
Query: 121 QMRYIRRWK---IKSLVEAEI---KTHYWLLACTLLV 151
+ I+ K++V+ ++ ++H +LA L +
Sbjct: 119 LVSTIKDRANEIYKNVVDLKLTRNRSHEAILASCLYI 155
>gi|255089519|ref|XP_002506681.1| predicted protein [Micromonas sp. RCC299]
gi|226521954|gb|ACO67939.1| predicted protein [Micromonas sp. RCC299]
Length = 364
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C K T ++ DH GD VC+ECGLVLES +DE+SEWRTF++ + DP R GPT
Sbjct: 18 ICRNCAKPTAIIEDHQQGDLVCTECGLVLESRVVDESSEWRTFSDSDKAGVDPNRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
N +LA+GGLST I K P+G + L+ R NRG+NPDR L+ AF I M+D +G
Sbjct: 78 NRMLANGGLSTSIGKNPDGTYNQTLT----RLHNRGANPDRALLQAFGRIGEMADHLGMT 133
Query: 123 RYIR 126
++
Sbjct: 134 SVVK 137
>gi|145353789|ref|XP_001421184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581421|gb|ABO99477.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 390
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 8/126 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN---ESGDNDPVRVGG 61
C+ C +HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + + G DP R G
Sbjct: 23 ICAKCARHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDRGGADPSRTVG 82
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 83 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALISAFHSIGEFADAMG 138
Query: 121 QMRYIR 126
R +R
Sbjct: 139 MNRVVR 144
>gi|297818592|ref|XP_002877179.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323017|gb|EFH53438.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGNLVTVIEKPKENVSSVVSKDDISTLCRTQNQVKNHEEDLIKKAFEEIQ 120
Query: 114 TMSD 117
M+D
Sbjct: 121 RMTD 124
>gi|303284018|ref|XP_003061300.1| transcription initiation factor [Micromonas pusilla CCMP1545]
gi|226457651|gb|EEH54950.1| transcription initiation factor [Micromonas pusilla CCMP1545]
Length = 370
Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 87/156 (55%), Gaps = 13/156 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C T ++ DH GD VC+ECGLVLE IDETSEWRTF++ + G DP R GPT
Sbjct: 18 ICKNCNVPTAIIEDHQQGDLVCTECGLVLEQGVIDETSEWRTFSDSDKGGADPSRTAGPT 77
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
N +LA GGL T I + P+G + L+ R NRG+NPD+ LI AF I ++D +G
Sbjct: 78 NRMLAHGGLGTSIGRNPDGTYNQTLT----RLHNRGANPDKALIAAFGKINELADHLGVT 133
Query: 123 RYIR-------RWKIKSLVEAEIKTHYWLLACTLLV 151
++ R +K V K+ + A L +
Sbjct: 134 SVVKDGACDVYRMVVKPGVSIAGKSQNAMFAACLYI 169
>gi|308811701|ref|XP_003083158.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
gi|116055037|emb|CAL57433.1| Transcription initiation factor IIB [Oryza sativa (ISS)
[Ostreococcus tauri]
Length = 395
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN---DPVRVGG 61
C C HT +V DH++GD +C+ECGLV+ES IDE SEWRTF + D DP R G
Sbjct: 26 ICPKCATHTAIVEDHASGDLICTECGLVIESRIIDECSEWRTFGDGDKDKNGADPSRTVG 85
Query: 62 PTNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
TN +L GGLST I K P+G +++L R NRG NPD+ LI AF +I +D +G
Sbjct: 86 ATNVMLTGGGLSTTIGKNPDGT----YNATLTRLHNRGMNPDKALIAAFHSIGEFADAMG 141
Query: 121 QMRYIR 126
R ++
Sbjct: 142 MNRVVK 147
>gi|242088689|ref|XP_002440177.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
gi|241945462|gb|EES18607.1| hypothetical protein SORBIDRAFT_09g027310 [Sorghum bicolor]
Length = 311
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGGP
Sbjct: 7 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGP 66
Query: 63 TNPLLADGGLSTVIA-----KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
++P L++ L T IA K G G L G++ ++ L+ AF IA M+D
Sbjct: 67 SDPFLSNTPLVTRIAYAGPQKTQGEGGHALPRMRVSAGAGGADHEQALVDAFHAIADMAD 126
Query: 118 RIGQMRYIR 126
R+G + IR
Sbjct: 127 RLGLVGTIR 135
>gi|281203102|gb|EFA77303.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 344
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 8/120 (6%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
FC C+ ++V D++ GD +C ECG+VL +DE SEWRTF+N ES +DP RVGGP
Sbjct: 39 FCHICQNPDPDIVEDYAKGDLICRECGVVLGDRIVDEHSEWRTFSNSESTGSDPNRVGGP 98
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
TNPLL D GLSTVI K G S + SS+L R QNRG +N DR L+ FK IA M+D +G
Sbjct: 99 TNPLLRDSGLSTVIGK--GTSKD--SSALSRMQNRGALANGDRSLLAGFKEIARMADHMG 154
>gi|297818608|ref|XP_002877187.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297323025|gb|EFH53446.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 336
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTITVIDHSSGDTICSECGLVLEAHIIEYSEEWRTFASDDNRSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG PTNPLL G L TVI KP +S S+L R QN+ N + LI AF+ I
Sbjct: 61 VGAPTNPLLKSGDLVTVIEKPKENISSVVSKDDLSTLCRAQNQLKNHEEDLIKKAFEEIQ 120
Query: 114 TMSD 117
++D
Sbjct: 121 RITD 124
>gi|15228689|ref|NP_189584.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|11994519|dbj|BAB02583.1| transcription initiation factor IIB (TFIIB)-like protein
[Arabidopsis thaliana]
gi|332644057|gb|AEE77578.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 336
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSD 117
M+D
Sbjct: 121 RMTD 124
>gi|412985634|emb|CCO19080.1| predicted protein [Bathycoccus prasinos]
Length = 396
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
CS CK T +V DH+ GD +C+ECGLV+ES +IDE SEWRTF++ + DP R G T
Sbjct: 17 ICSQCKVQTTLVEDHAQGDLICTECGLVVESRTIDECSEWRTFSDSDKAGGDPSRTVGAT 76
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
N +L+ GGLST I + P+G + +L R NR NPD+ L+ AF I M+DR+
Sbjct: 77 NNMLSGGGLSTTIGRNPDGT----FNQTLTRLHNREGNPDKVLMAAFSQIGDMADRMAMN 132
Query: 123 RYIR 126
+ I+
Sbjct: 133 QTIK 136
>gi|39545936|gb|AAR28031.1| mutant TFIIB3 [Arabidopsis thaliana]
Length = 336
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVR 58
M + C DCK+ T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++ D DP R
Sbjct: 1 MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60
Query: 59 VGGPTNPLLADGGLSTVIAKPNGASGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 113
VG TNP L G L T+I KP + LS S+L R N+ N + LI AF+ I
Sbjct: 61 VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120
Query: 114 TMSD 117
M+D
Sbjct: 121 RMTD 124
>gi|384244800|gb|EIE18298.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/120 (51%), Positives = 80/120 (66%), Gaps = 4/120 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTN 64
C+DC ++ V DH+ GD VC+ CGLV ESH IDE+SEWR F ++ GD DP RVGGPTN
Sbjct: 12 CADCGS-SDFVEDHAQGDLVCTGCGLVAESHVIDESSEWRNFGDKDGDTTDPSRVGGPTN 70
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
LL + GLSTVI P GAS L+ +L R +GSNPD+ L+ AF I+ + + +G R
Sbjct: 71 HLLTN-GLSTVIGAPTKGASNATLTRNLQRAHAQGSNPDQALLRAFGHISRLCEALGLNR 129
>gi|413946339|gb|AFW78988.1| hypothetical protein ZEAMMB73_349781 [Zea mays]
Length = 311
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 81/129 (62%), Gaps = 8/129 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG--DNDPVRVGGP 62
+C DC + TEVV DH+ GDT+C+EC LVLE+H IDE SEWR FA++ G D DP RVGG
Sbjct: 8 YCPDCHRTTEVVLDHATGDTICTECALVLEAHYIDEGSEWRNFADDGGGEDRDPSRVGGS 67
Query: 63 TNPLLADGGLSTVI--AKPNGASGEFLSSSLGRWQ---NRGSNPDRGLILAFKTIATMSD 117
++P LA+ L T I A P A GE +L R + G+ ++ L+ F IA M+D
Sbjct: 68 SDPFLANMPLVTQIAYAGPQKAQGEG-GHALPRLHVSASGGAGGEQTLVEGFHAIADMAD 126
Query: 118 RIGQMRYIR 126
R+G + IR
Sbjct: 127 RLGLVATIR 135
>gi|115465251|ref|NP_001056225.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|57863857|gb|AAW56898.1| putative transcription initiation factor TFIIB [Oryza sativa
Japonica Group]
gi|113579776|dbj|BAF18139.1| Os05g0548200 [Oryza sativa Japonica Group]
gi|215741580|dbj|BAG98075.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 10/145 (6%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVI----AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+P L D T I A P A L + R G +P+ L+ AF+ IA M+D
Sbjct: 70 RADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRR-RVDVVGPSPENALVAAFRGIADMAD 128
Query: 118 RIGQMRYIR-RWK--IKSLVEAEIK 139
R+G + IR R K K L EA K
Sbjct: 129 RLGLVATIRDRAKEVFKKLGEAPTK 153
>gi|158288246|ref|XP_310128.4| AGAP009558-PA [Anopheles gambiae str. PEST]
gi|157019157|gb|EAA05904.4| AGAP009558-PA [Anopheles gambiae str. PEST]
Length = 316
Score = 112 bits (279), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYSHPEAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DRI +
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|224141495|ref|XP_002324107.1| predicted protein [Populus trichocarpa]
gi|222867109|gb|EEF04240.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 6/122 (4%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C DCK +T +V DH GDT+CS+CGLVLES IDE +EWRTF +++ D DP RVG N
Sbjct: 1 YCKDCKANTYIVLDHCTGDTICSDCGLVLESCYIDEIAEWRTFNDDNNDKDPNRVGYNVN 60
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRY 124
PLL+ G L T+I+ G ++ RWQ+ SN DR L+ F I +++R+G +R
Sbjct: 61 PLLSQGNLKTLISNNKG------DHAIPRWQDGVSNSDRVLLQGFDIIEIIANRLGLVRP 114
Query: 125 IR 126
I+
Sbjct: 115 IK 116
>gi|195118790|ref|XP_002003919.1| GI20422 [Drosophila mojavensis]
gi|195384910|ref|XP_002051155.1| TfIIB [Drosophila virilis]
gi|193914494|gb|EDW13361.1| GI20422 [Drosophila mojavensis]
gi|194147612|gb|EDW63310.1| TfIIB [Drosophila virilis]
Length = 315
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|195473679|ref|XP_002089120.1| GE18945 [Drosophila yakuba]
gi|194175221|gb|EDW88832.1| GE18945 [Drosophila yakuba]
Length = 315
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|17136758|ref|NP_476888.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|442627311|ref|NP_001260349.1| transcription factor IIB, isoform B [Drosophila melanogaster]
gi|194761835|ref|XP_001963128.1| GF15790 [Drosophila ananassae]
gi|194859971|ref|XP_001969489.1| GG10133 [Drosophila erecta]
gi|195146744|ref|XP_002014344.1| GL19146 [Drosophila persimilis]
gi|195434140|ref|XP_002065061.1| GK14874 [Drosophila willistoni]
gi|195578215|ref|XP_002078961.1| GD23702 [Drosophila simulans]
gi|135628|sp|P29052.1|TF2B_DROME RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|158538|gb|AAA28929.1| RNA polymerase II transcription factor [Drosophila melanogaster]
gi|158540|gb|AAA28930.1| transcription factor IIB [Drosophila melanogaster]
gi|414282|gb|AAA68626.1| transcription factor IIB [Drosophila melanogaster]
gi|1016268|gb|AAA79093.1| transcription factor IIB [Drosophila melanogaster]
gi|7297699|gb|AAF52951.1| transcription factor IIB, isoform A [Drosophila melanogaster]
gi|41058137|gb|AAR99117.1| RE29729p [Drosophila melanogaster]
gi|51092169|gb|AAT94498.1| LD24035p [Drosophila melanogaster]
gi|190616825|gb|EDV32349.1| GF15790 [Drosophila ananassae]
gi|190661356|gb|EDV58548.1| GG10133 [Drosophila erecta]
gi|194106297|gb|EDW28340.1| GL19146 [Drosophila persimilis]
gi|194161146|gb|EDW76047.1| GK14874 [Drosophila willistoni]
gi|194190970|gb|EDX04546.1| GD23702 [Drosophila simulans]
gi|220953484|gb|ACL89285.1| TfIIB-PA [synthetic construct]
gi|440213669|gb|AGB92884.1| transcription factor IIB, isoform B [Drosophila melanogaster]
Length = 315
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|195339829|ref|XP_002036519.1| GM18405 [Drosophila sechellia]
gi|194130399|gb|EDW52442.1| GM18405 [Drosophila sechellia]
Length = 315
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|170041267|ref|XP_001848391.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
gi|167864865|gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus]
Length = 316
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DRI +
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|157109648|ref|XP_001650764.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878948|gb|EAT43173.1| AAEL005368-PA [Aedes aegypti]
Length = 316
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DRI +
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|157109646|ref|XP_001650763.1| transcription initiation factor TFIIB [Aedes aegypti]
gi|108878947|gb|EAT43172.1| AAEL005368-PB [Aedes aegypti]
Length = 318
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 15 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DRI +
Sbjct: 75 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|312379141|gb|EFR25512.1| hypothetical protein AND_09086 [Anopheles darlingi]
Length = 338
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 37 CNSHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPL 96
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P F + ++QNR S+ DR LI AFK I+TM+DRI +
Sbjct: 97 LSGGDLSTMIG-PGTGPASFDAFGTAKYQNRRTMSSSDRALIAAFKEISTMADRINLPKT 155
Query: 125 I 125
I
Sbjct: 156 I 156
>gi|195051163|ref|XP_001993045.1| GH13607 [Drosophila grimshawi]
gi|193900104|gb|EDV98970.1| GH13607 [Drosophila grimshawi]
Length = 315
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I+ M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISLMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|431897056|gb|ELK06320.1| Transcription initiation factor IIB [Pteropus alecto]
Length = 316
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DGGLST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGGLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|255540855|ref|XP_002511492.1| transcription initiation factor iib, putative [Ricinus communis]
gi|223550607|gb|EEF52094.1| transcription initiation factor iib, putative [Ricinus communis]
Length = 90
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 14/102 (13%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M D++C+DC + TE+V DHSAGDT+C+ECGL RT AN+S D+ P RVG
Sbjct: 1 MADSYCTDCMRVTEIVMDHSAGDTICAECGL-------------RTSANQSSDHGPNRVG 47
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD 102
P NPLLA+GGL+TVI+K S S+SLG+W NR S+PD
Sbjct: 48 APVNPLLANGGLTTVISK-TTKSNALFSASLGKWPNRASDPD 88
>gi|289740973|gb|ADD19234.1| transcription initiation factor tFIIB [Glossina morsitans
morsitans]
Length = 314
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 8 TNKVCCFYHPDAPLIEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 67
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL+ G LST+I P S F +S ++QNR S+ DR LI AFK I+ M+DRI
Sbjct: 68 PENPLLSGGDLSTIIG-PGTGSASFDASGSPKYQNRRTMSSSDRSLISAFKEISMMADRI 126
Query: 120 GQMRYI 125
+ I
Sbjct: 127 NLPKTI 132
>gi|328865397|gb|EGG13783.1| transcription initiation factor IIB [Dictyostelium fasciculatum]
Length = 331
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 73/119 (61%), Gaps = 8/119 (6%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C CK +VV D++ GD +C CG V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 27 CPVCKDPDPDVVEDYARGDLICRRCGCVIGDRIVDEHSEWRTFSNSESTGADPNRVGGPN 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIG 120
NPLL +GGLSTVI K G LS R QNRG+ + DR L+ AFK I MSD IG
Sbjct: 87 NPLLREGGLSTVIGKGTGKDASVLS----RMQNRGALGSGDRSLLAAFKEIEKMSDHIG 141
>gi|125553198|gb|EAY98907.1| hypothetical protein OsI_20862 [Oryza sativa Indica Group]
Length = 319
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 9/132 (6%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLAD--GG--LSTVIAKPNGASGEFLSSSL---GRWQNRGSNPDRGLILAFKTIAT 114
+P L D GG ++ A P AS ++ L R G +P+ L+ AF+ IA
Sbjct: 70 RADPFLPDHVGGTTIAYSAAPPKNASAADAAAPLLTRRRVDVVGPSPENALVAAFRGIAD 129
Query: 115 MSDRIGQMRYIR 126
M+DR+G + IR
Sbjct: 130 MADRLGLVATIR 141
>gi|354801973|gb|AER39748.1| transcription initiation factor IIB [Cyprinus carpio]
Length = 316
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF NE NDP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATNDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TMSDRI
Sbjct: 75 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSADRAMLNAFKEITTMSDRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|74228747|dbj|BAE21864.1| unnamed protein product [Mus musculus]
Length = 316
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTIIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|338224396|gb|AEI88079.1| transcription initiation factor IIB-like protein [Scylla
paramamosain]
Length = 219
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE +NDP RVGGP NPL
Sbjct: 14 CPQHPEAHLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANNDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
L LST+I P F ++QNR S+ DR LI AF+ I+ M+D+I
Sbjct: 74 LNGSDLSTIIG-PGAGGASFDGFGNSKYQNRRSMSSSDRALINAFREISNMADKI 127
>gi|332221838|ref|XP_003260070.1| PREDICTED: transcription initiation factor IIB [Nomascus
leucogenys]
Length = 316
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD VC ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMVCPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|74180816|dbj|BAE25617.1| unnamed protein product [Mus musculus]
Length = 316
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|291398561|ref|XP_002715921.1| PREDICTED: general transcription factor IIB isoform 1 [Oryctolagus
cuniculus]
Length = 315
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 14 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 73
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 74 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 130
Query: 123 RYI 125
R I
Sbjct: 131 RNI 133
>gi|355693876|gb|AER99482.1| proteinral transcription factor IIB [Mustela putorius furo]
Length = 289
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 23 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 82
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 83 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 139
Query: 123 RYI 125
R I
Sbjct: 140 RNI 142
>gi|4504193|ref|NP_001505.1| transcription initiation factor IIB [Homo sapiens]
gi|197102490|ref|NP_001126175.1| transcription initiation factor IIB [Pongo abelii]
gi|388453639|ref|NP_001253799.1| transcription initiation factor IIB [Macaca mulatta]
gi|57088257|ref|XP_537085.1| PREDICTED: transcription initiation factor IIB isoform 1 [Canis
lupus familiaris]
gi|296208436|ref|XP_002751091.1| PREDICTED: transcription initiation factor IIB [Callithrix jacchus]
gi|301764575|ref|XP_002917714.1| PREDICTED: transcription initiation factor IIB-like [Ailuropoda
melanoleuca]
gi|332809462|ref|XP_001147170.2| PREDICTED: transcription initiation factor IIB [Pan troglodytes]
gi|335287423|ref|XP_001929441.3| PREDICTED: transcription initiation factor IIB [Sus scrofa]
gi|344278936|ref|XP_003411247.1| PREDICTED: transcription initiation factor IIB [Loxodonta africana]
gi|395821801|ref|XP_003784220.1| PREDICTED: transcription initiation factor IIB [Otolemur garnettii]
gi|397473904|ref|XP_003808436.1| PREDICTED: transcription initiation factor IIB [Pan paniscus]
gi|402855161|ref|XP_003892206.1| PREDICTED: transcription initiation factor IIB [Papio anubis]
gi|403305513|ref|XP_003943308.1| PREDICTED: transcription initiation factor IIB [Saimiri boliviensis
boliviensis]
gi|426215922|ref|XP_004002218.1| PREDICTED: transcription initiation factor IIB [Ovis aries]
gi|426330265|ref|XP_004026141.1| PREDICTED: transcription initiation factor IIB [Gorilla gorilla
gorilla]
gi|135629|sp|Q00403.1|TF2B_HUMAN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=S300-II
gi|71153595|sp|Q5R886.1|TF2B_PONAB RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|75075384|sp|Q4R3J5.1|TF2B_MACFA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|37058|emb|CAA41958.1| IIB protein [Homo sapiens]
gi|339490|gb|AAA61149.1| transcription factor [Homo sapiens]
gi|18088837|gb|AAH20597.1| General transcription factor IIB [Homo sapiens]
gi|55730606|emb|CAH92024.1| hypothetical protein [Pongo abelii]
gi|67971960|dbj|BAE02322.1| unnamed protein product [Macaca fascicularis]
gi|158260667|dbj|BAF82511.1| unnamed protein product [Homo sapiens]
gi|167773977|gb|ABZ92423.1| general transcription factor IIB [synthetic construct]
gi|197692293|dbj|BAG70110.1| general transcription factor IIB [Homo sapiens]
gi|296489281|tpg|DAA31394.1| TPA: transcription initiation factor IIB [Bos taurus]
gi|306921489|dbj|BAJ17824.1| general transcription factor IIB [synthetic construct]
gi|349605874|gb|AEQ00964.1| Transcription initiation factor IIB-like protein [Equus caballus]
gi|380812116|gb|AFE77933.1| transcription initiation factor IIB [Macaca mulatta]
gi|383417803|gb|AFH32115.1| transcription initiation factor IIB [Macaca mulatta]
gi|384946652|gb|AFI36931.1| transcription initiation factor IIB [Macaca mulatta]
gi|410208354|gb|JAA01396.1| general transcription factor IIB [Pan troglodytes]
gi|410257026|gb|JAA16480.1| general transcription factor IIB [Pan troglodytes]
gi|410304078|gb|JAA30639.1| general transcription factor IIB [Pan troglodytes]
gi|410349827|gb|JAA41517.1| general transcription factor IIB [Pan troglodytes]
gi|228040|prf||1715332A transcription initiation factor IIB
Length = 316
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|114051409|ref|NP_001039607.1| transcription initiation factor IIB [Bos taurus]
gi|122143863|sp|Q2KIN8.1|TF2B_BOVIN RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|86438483|gb|AAI12571.1| General transcription factor IIB [Bos taurus]
Length = 316
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|291398563|ref|XP_002715922.1| PREDICTED: general transcription factor IIB isoform 2 [Oryctolagus
cuniculus]
Length = 316
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|13591965|ref|NP_112303.1| transcription initiation factor IIB [Rattus norvegicus]
gi|21704076|ref|NP_663521.1| transcription initiation factor IIB [Mus musculus]
gi|51703316|sp|P62916.1|TF2B_RAT RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|51703324|sp|P62915.1|TF2B_MOUSE RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=RNA polymerase II alpha initiation factor
gi|55624|emb|CAA46766.1| alpha initiation factor [Rattus norvegicus]
gi|16741677|gb|AAH16637.1| General transcription factor IIB [Mus musculus]
gi|55391522|gb|AAH85345.1| General transcription factor IIB [Rattus norvegicus]
gi|74144729|dbj|BAE27344.1| unnamed protein product [Mus musculus]
gi|74147252|dbj|BAE27522.1| unnamed protein product [Mus musculus]
gi|74195918|dbj|BAE30517.1| unnamed protein product [Mus musculus]
gi|74211309|dbj|BAE26416.1| unnamed protein product [Mus musculus]
gi|74221596|dbj|BAE21509.1| unnamed protein product [Mus musculus]
gi|74226680|dbj|BAE26991.1| unnamed protein product [Mus musculus]
gi|148680097|gb|EDL12044.1| general transcription factor IIB [Mus musculus]
gi|149026117|gb|EDL82360.1| general transcription factor IIB [Rattus norvegicus]
Length = 316
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|354495851|ref|XP_003510042.1| PREDICTED: transcription initiation factor IIB-like [Cricetulus
griseus]
Length = 477
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 176 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 235
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 236 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 292
Query: 123 RYI 125
R I
Sbjct: 293 RNI 295
>gi|254934|gb|AAB23144.1| S300-II [Homo sapiens]
Length = 311
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 10 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 69
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 70 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 126
Query: 123 RYI 125
R I
Sbjct: 127 RNI 129
>gi|281338510|gb|EFB14094.1| hypothetical protein PANDA_006057 [Ailuropoda melanoleuca]
gi|355558148|gb|EHH14928.1| hypothetical protein EGK_00940, partial [Macaca mulatta]
Length = 310
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 RYI 125
R I
Sbjct: 126 RNI 128
>gi|270006604|gb|EFA03052.1| hypothetical protein TcasGA2_TC010900 [Tribolium castaneum]
Length = 315
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL L+T+I P F S + R+QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLTTMIG-PGRGDASFDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 127
Query: 120 GQMRYI 125
R I
Sbjct: 128 NLPRTI 133
>gi|119593566|gb|EAW73160.1| general transcription factor IIB, isoform CRA_b [Homo sapiens]
Length = 373
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 72 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 131
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 132 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 188
Query: 123 RYI 125
R I
Sbjct: 189 RNI 191
>gi|363736712|ref|XP_422356.3| PREDICTED: transcription initiation factor IIB [Gallus gallus]
Length = 316
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|224057480|ref|XP_002195495.1| PREDICTED: transcription initiation factor IIB isoform 1
[Taeniopygia guttata]
Length = 316
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|449268065|gb|EMC78935.1| Transcription initiation factor IIB [Columba livia]
Length = 318
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DRI
Sbjct: 77 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 133
Query: 123 RYI 125
R I
Sbjct: 134 RNI 136
>gi|126305849|ref|XP_001364333.1| PREDICTED: transcription initiation factor IIB-like [Monodelphis
domestica]
Length = 316
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|338725267|ref|XP_001495317.2| PREDICTED: transcription initiation factor IIB-like [Equus
caballus]
Length = 415
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 114 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 173
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 174 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 230
Query: 123 RYI 125
R I
Sbjct: 231 RNI 233
>gi|326925120|ref|XP_003208769.1| PREDICTED: transcription initiation factor IIB-like [Meleagris
gallopavo]
Length = 353
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 52 CPNHPDSILVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 111
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DRI
Sbjct: 112 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLP 168
Query: 123 RYI 125
R I
Sbjct: 169 RNI 171
>gi|327270757|ref|XP_003220155.1| PREDICTED: transcription initiation factor IIB-like [Anolis
carolinensis]
Length = 316
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DRI
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEIASMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|332376975|gb|AEE63627.1| unknown [Dendroctonus ponderosae]
Length = 315
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CSSHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMRY 124
L L+T+I P + + + R+QNR + + DR LI AFK I M+DRI R
Sbjct: 74 LGGSDLTTMIG-PGRGDASYDTFGVARYQNRRTMNSSDRALINAFKEINAMADRINLPRT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|189236988|ref|XP_970151.2| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) [Tribolium castaneum]
Length = 313
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCNSHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL L+T+I P AS F S + R+QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLTTMIG-PGDAS--FDSFGVARYQNRKTMSSSDRALINAFREINGMADRI 125
Query: 120 GQMRYI 125
R I
Sbjct: 126 NLPRTI 131
>gi|351705451|gb|EHB08370.1| Transcription initiation factor IIB, partial [Heterocephalus
glaber]
Length = 309
Score = 105 bits (262), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 8 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNPL 67
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 68 LSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 124
Query: 123 RYI 125
R I
Sbjct: 125 RNI 127
>gi|440912096|gb|ELR61695.1| Transcription initiation factor IIB, partial [Bos grunniens mutus]
Length = 310
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ A D +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAADMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 69 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 RYI 125
R I
Sbjct: 126 RNI 128
>gi|156546454|ref|XP_001607291.1| PREDICTED: transcription initiation factor IIB-like [Nasonia
vitripennis]
Length = 315
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 74/121 (61%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVGGP NPL
Sbjct: 14 CYAHPEAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKAGTDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMRY 124
L LST+I GA+ F + + ++QNR + + DR LI AF+ I M+DRI R
Sbjct: 74 LNGSDLSTIIGPGTGAA-SFDAFGVSKYQNRRTMNSSDRTLINAFREINAMADRINLPRT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>gi|410967657|ref|XP_003990334.1| PREDICTED: transcription initiation factor IIB [Felis catus]
Length = 316
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 74/115 (64%), Gaps = 7/115 (6%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST
Sbjct: 23 LVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLST 82
Query: 75 VIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI R I
Sbjct: 83 MIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNI 134
>gi|387019195|gb|AFJ51715.1| Transcription initiation factor IIB-like [Crotalus adamanteus]
Length = 316
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK IA+M+DRI
Sbjct: 75 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSFDRAMMNAFKEIASMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|41054405|ref|NP_955991.1| transcription initiation factor IIB [Danio rerio]
gi|33585882|gb|AAH55569.1| General transcription factor IIB [Danio rerio]
Length = 316
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICPECGLVVRDRVIDVGSEWRTFSNEKATKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|213515448|ref|NP_001134769.1| Transcription initiation factor IIB [Salmo salar]
gi|209735868|gb|ACI68803.1| Transcription initiation factor IIB [Salmo salar]
gi|303661887|gb|ADM16053.1| Transcription initiation factor IIB [Salmo salar]
Length = 318
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 RYI 125
R I
Sbjct: 134 RNI 136
>gi|307106611|gb|EFN54856.1| hypothetical protein CHLNCDRAFT_24273 [Chlorella variabilis]
Length = 333
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGPT 63
C DC + ++ V DH++GD VC CG+V+E+H IDE SEWRTFA++ SG +DP RVGGP
Sbjct: 16 CPDCGQ-SDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPV 74
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATM 115
N LL+DGG+ST+I G + + G W G DR +I AF+ I +
Sbjct: 75 NHLLSDGGMSTMIGGGKGVDHALVREAGGCWPAGDGVTTDRAVIAAFREIGKI 127
>gi|125585246|gb|EAZ25910.1| hypothetical protein OsJ_09753 [Oryza sativa Japonica Group]
Length = 309
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF--ANESGDNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF A D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DR+ +
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 RYIR 126
IR
Sbjct: 130 ATIR 133
>gi|383862315|ref|XP_003706629.1| PREDICTED: transcription initiation factor IIB-like [Megachile
rotundata]
Length = 315
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LST+I GA+ F + + ++QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGVSKYQNRRTMSSSDRALINAFREINGMADRI 127
>gi|345329183|ref|XP_001508212.2| PREDICTED: transcription initiation factor IIB-like, partial
[Ornithorhynchus anatinus]
Length = 310
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I M+DRI
Sbjct: 69 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAIMNAFKEITNMADRINLP 125
Query: 123 RYI 125
R I
Sbjct: 126 RNI 128
>gi|432911722|ref|XP_004078691.1| PREDICTED: transcription initiation factor IIB-like [Oryzias
latipes]
Length = 318
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKAQKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L G L+T+I K G S F ++QNR S+ DR ++ AFK I+TM+DRI R
Sbjct: 77 LNGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMLHAFKEISTMADRINLPRN 135
Query: 125 I 125
I
Sbjct: 136 I 136
>gi|24414276|gb|AAN59779.1| Putative transcription initiation factor IIB [Oryza sativa Japonica
Group]
gi|108706635|gb|ABF94430.1| Transcription factor TFIIB repeat family protein [Oryza sativa
Japonica Group]
gi|125542744|gb|EAY88883.1| hypothetical protein OsI_10362 [Oryza sativa Indica Group]
Length = 308
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTF--ANESGDNDPVRVGGP 62
+C +C + T VV DH+ GDT+C+EC LVLE IDETSEWRTF A D DP RVGG
Sbjct: 11 YCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGGC 70
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
++P L+ L TV+A + + S R ++ S D L +AF+ I+ M+DR+ +
Sbjct: 71 SDPFLSHAELGTVVAPAKRQAKDTASPPHVRVDSK-SGQDSSLAVAFRAISDMADRLQLV 129
Query: 123 RYIR 126
IR
Sbjct: 130 ATIR 133
>gi|395530416|ref|XP_003767291.1| PREDICTED: transcription initiation factor IIB, partial
[Sarcophilus harrisii]
Length = 343
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 42 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 101
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG L+T+I K GA+ EF +S ++QN S+ DR ++ AFK I TM+DRI
Sbjct: 102 LSDGDLTTMIGKGTGAASFDEFGNS---KYQNHRTMSSSDRAMMNAFKEITTMADRINLP 158
Query: 123 RYI 125
R I
Sbjct: 159 RNI 161
>gi|209735698|gb|ACI68718.1| Transcription initiation factor IIB [Salmo salar]
Length = 224
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF NE DP RVG NPL
Sbjct: 17 CPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKATQDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G LST+I+K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 77 LNGGDLSTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEITTMADRINLP 133
Query: 123 RYI 125
R I
Sbjct: 134 RNI 136
>gi|348500548|ref|XP_003437835.1| PREDICTED: transcription initiation factor IIB-like [Oreochromis
niloticus]
gi|50844459|gb|AAT84346.1| general transcription factor II B [Oreochromis mossambicus]
Length = 318
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 77/123 (62%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDACLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G L+T+I+K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DRI
Sbjct: 77 LNGGDLTTMISKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 RYI 125
R I
Sbjct: 134 RNI 136
>gi|350417950|ref|XP_003491660.1| PREDICTED: transcription initiation factor IIB-like [Bombus
impatiens]
Length = 315
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
>gi|432107068|gb|ELK32500.1| Transcription initiation factor IIB, partial [Myotis davidii]
Length = 310
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 9 CPNHPDSILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 68
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+D LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 69 LSDRDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 125
Query: 123 RYI 125
R I
Sbjct: 126 RNI 128
>gi|48102797|ref|XP_395432.1| PREDICTED: transcription initiation factor IIB isoform 1 [Apis
mellifera]
gi|380019249|ref|XP_003693523.1| PREDICTED: transcription initiation factor IIB-like [Apis florea]
Length = 315
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
>gi|307179392|gb|EFN67722.1| Transcription initiation factor IIB [Camponotus floridanus]
Length = 315
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKICCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGIDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LSTVI GA+ F ++QNR S+ DR L+ AF+ I M+DRI
Sbjct: 69 PENPLLNGADLSTVIGPGTGAA-SFDGFGTAKYQNRRTLSSSDRALLNAFREINGMADRI 127
>gi|357128609|ref|XP_003565964.1| PREDICTED: transcription initiation factor IIB-2-like [Brachypodium
distachyon]
Length = 338
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 20/151 (13%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG---DNDPVRVGG 61
+C+DC + TEVV DH GDT+C++CG+VL+ H IDE EWR F ++S D DP RVG
Sbjct: 11 YCTDCHRATEVVLDHGTGDTICTDCGMVLDEHYIDEGQEWRVFGDDSAGGEDRDPCRVGS 70
Query: 62 PTNPLL-ADGGLSTVIA-----------KPNGASGEFLSSSLGRWQNRGSNPDRGLILAF 109
+P L DG LST I + A+ L + G PD L+ AF
Sbjct: 71 AGDPFLRGDGLLSTCIVHSAKSKSRSRSGSDPAAALHLPRMM--LDVGGPAPDTALVDAF 128
Query: 110 KTIATMSDRIGQMRYIR---RWKIKSLVEAE 137
+ IA M+DR+G + IR + K L EA+
Sbjct: 129 RGIADMADRLGLVATIRDSAKQTFKRLEEAK 159
>gi|307197188|gb|EFN78510.1| Transcription initiation factor IIB [Harpegnathos saltator]
Length = 373
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 67 TNKVCCYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 126
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL+ LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DRI
Sbjct: 127 PENPLLSGSDLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALVNAFREINGMADRI 185
>gi|47215967|emb|CAF96369.1| unnamed protein product [Tetraodon nigroviridis]
Length = 344
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C ECGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 43 CPNHPDSTLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 102
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DRI
Sbjct: 103 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 159
Query: 123 RYI 125
R I
Sbjct: 160 RNI 162
>gi|321461615|gb|EFX72645.1| hypothetical protein DAPPUDRAFT_325996 [Daphnia pulex]
Length = 318
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE + DP RVGG N L
Sbjct: 15 CSAHPDAALIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKANADPSRVGGSENAL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L LST+I P S F + ++QNR S+ DR L+ AFK I+ M+DRI R
Sbjct: 75 LNGTDLSTMIG-PGTGSASFDEHGVAKYQNRRTMSSSDRALVNAFKEISNMADRINLPRT 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDRI R
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G L+T+I K GA+ F ++QNR S+ DR ++ AFK I M+DRI R
Sbjct: 75 LSGGDLTTMIGKGTGAA-SFDEFGNNKYQNRRTMSSSDRAMMNAFKEITNMADRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>gi|340728624|ref|XP_003402619.1| PREDICTED: transcription initiation factor IIB-like, partial
[Bombus terrestris]
Length = 176
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 9 TNKVCCYAHPDASLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGVDPSRVGG 68
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LST+I GA+ F + ++QNR S+ DR LI AF+ I M+DRI
Sbjct: 69 PENPLLNGSDLSTMIGPGTGAA-SFDAFGASKYQNRRTMSSSDRALINAFREINGMADRI 127
>gi|322794062|gb|EFZ17278.1| hypothetical protein SINV_13223 [Solenopsis invicta]
Length = 321
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGG
Sbjct: 4 TNKICCYAHPDATLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGG 63
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
P NPLL LST+I GA+ F ++QNR S+ DR L+ AF+ I M+DRI
Sbjct: 64 PENPLLNGADLSTMIGPGTGAA-SFDGFGTAKYQNRRTMSSSDRALLNAFREINGMADRI 122
>gi|195999146|ref|XP_002109441.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
gi|190587565|gb|EDV27607.1| hypothetical protein TRIADDRAFT_53474 [Trichoplax adhaerens]
Length = 340
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+SAGD VC ECGLV+ ID SEWRTF+NE +DP RVG NPL
Sbjct: 38 CPRHPQANLIEDYSAGDIVCPECGLVVGDRIIDVGSEWRTFSNEKARSDPSRVGASENPL 97
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
L L+TVI K S + ++NR + DR L+ AF+ IATM+DRI
Sbjct: 98 LNGSDLTTVIGKSPSGSAAYDVDGNALYRNRSAMNGTDRSLVNAFQEIATMADRI 152
>gi|410924600|ref|XP_003975769.1| PREDICTED: transcription initiation factor IIB-like [Takifugu
rubripes]
Length = 318
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +C +CGLV+ ID SEWRTF+NE DP RVG NPL
Sbjct: 17 CPNHPDSILVEDYRAGDMICPDCGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPL 76
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I+TM+DRI
Sbjct: 77 LNGGDLTTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMLNAFKEISTMADRINLP 133
Query: 123 RYI 125
R I
Sbjct: 134 RNI 136
>gi|242013902|ref|XP_002427639.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
gi|212512060|gb|EEB14901.1| transcription initiation factor iib, putative [Pediculus humanus
corporis]
Length = 313
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 12 CYAHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNEKAGTDPSRVGGPENPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
L L T+I P F + ++QNR S+ DR LI AF+ I M+DRI
Sbjct: 72 LNGSDLCTMIG-PGRGDASFDGLGVSKYQNRRTMSSSDRALINAFREINAMADRI 125
>gi|198428626|ref|XP_002129417.1| PREDICTED: similar to Transcription initiation factor IIB (General
transcription factor TFIIB) (S300-II) [Ciona
intestinalis]
Length = 314
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +ID SEWRTF+N+ D RVG NPL
Sbjct: 12 CPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFSNDKDSKDMSRVGDSQNPL 71
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
L+ LST+I +P+G G + ++ NR + N DR LI AF+ I++M+DRI
Sbjct: 72 LSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLIHAFREISSMADRI 126
>gi|260797487|ref|XP_002593734.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
gi|229278962|gb|EEN49745.1| hypothetical protein BRAFLDRAFT_117242 [Branchiostoma floridae]
Length = 319
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + ++ D+ AGD +CSECGLV+ +D +EWRTF+NE D D RVG NPL
Sbjct: 18 CPEHPDAHLIEDYRAGDQICSECGLVVGDRVVDVGTEWRTFSNEKSDKDRSRVGAAENPL 77
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I++P+G++G F ++ NR S+ DR L+ AF+ I M+DRI R
Sbjct: 78 LSGGDLSTMISRPSGSAG-FNEDGSAKYHNRRSMSSSDRALVNAFREITGMADRINLPRN 136
Query: 125 I 125
I
Sbjct: 137 I 137
>gi|198475810|ref|XP_002132499.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
gi|198137970|gb|EDY69901.1| GA27746 [Drosophila pseudoobscura pseudoobscura]
Length = 314
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L + P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LXXXXXXXI--GPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 131
Query: 125 I 125
I
Sbjct: 132 I 132
>gi|346465163|gb|AEO32426.1| hypothetical protein [Amblyomma maculatum]
Length = 268
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 5 FCSDCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC+D H + V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG
Sbjct: 13 FCTD---HPDAVLVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGAA 69
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
NPLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DRI
Sbjct: 70 ENPLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALLNAFREISNMADRIN 128
Query: 121 QMRYI 125
+ I
Sbjct: 129 LTKTI 133
>gi|357624850|gb|EHJ75466.1| hypothetical protein KGM_17256 [Danaus plexippus]
Length = 285
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL+ G LST+I P
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-PGRGDA 60
Query: 85 EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
F S + ++QNR S+ DR LI AF+ I TM+DRI
Sbjct: 61 SFDSFGVSKYQNRRNISSTDRALINAFREINTMADRI 97
>gi|330793157|ref|XP_003284652.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
gi|325085451|gb|EGC38858.1| hypothetical protein DICPUDRAFT_53091 [Dictyostelium purpureum]
Length = 353
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 6 CSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C C+ + +++ D++ GD +C ECG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 48 CKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 107
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIG 120
NPLL D LST I K G SSSL R QN+ + DR L+ AFK I M+D +
Sbjct: 108 NPLLRDSALSTTIGK-----GSRDSSSLNRLQNKSALGTGDRNLLAAFKEIGRMADHMN 161
>gi|442754741|gb|JAA69530.1| Putative transcription initiation factor tfiib [Ixodes ricinus]
Length = 315
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F NE +NDP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFPNEKSNNDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DRI
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSSDRALVNAFREISNMADRINLT 130
Query: 123 RYI 125
+ I
Sbjct: 131 KTI 133
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 5 FCSDCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
FC D H E ++ D+ AGD +C +CGLV+ +D +EWR F NE NDP RVG
Sbjct: 12 FCPD---HPEANLIEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAA 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
NPLL LST+I + G F S ++ NR S+ DR LI AF+ I+ M DRI
Sbjct: 69 ENPLLNGSDLSTIIGRGTG-DASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRIN 127
Query: 121 QMRYI 125
R I
Sbjct: 128 LTRNI 132
>gi|159466284|ref|XP_001691339.1| hypothetical protein CHLREDRAFT_115221 [Chlamydomonas reinhardtii]
gi|158279311|gb|EDP05072.1| predicted protein [Chlamydomonas reinhardtii]
Length = 312
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRV 59
M FC C+ V F S GD VC +CG V ES IDE SEWRTF+++ D DP RV
Sbjct: 1 MDTEFCITCRGDDFVEF-KSEGDLVCRKCGTVKESRLIDERSEWRTFSDKDKDTTDPNRV 59
Query: 60 GGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
GGPTN LL GL+T I + G LS +L R R +NPDR L+ AFK + M D +
Sbjct: 60 GGPTNHLLE--GLTTTIGRERNDGG--LSYALNRIHARTNNPDRLLVNAFKEVGRMCDLL 115
Query: 120 G 120
G
Sbjct: 116 G 116
>gi|156372338|ref|XP_001628995.1| predicted protein [Nematostella vectensis]
gi|156215985|gb|EDO36932.1| predicted protein [Nematostella vectensis]
Length = 310
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C+ H + ++ D+ AGD +CSECGLV+ +D SEWRTF+NE +DP RVG NPL
Sbjct: 9 CRHHPDAPLIEDYRAGDMICSECGLVVGDRVVDVGSEWRTFSNEKATSDPSRVGAAQNPL 68
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMR 123
L+ G LST+I KP+G + + R N S DR L+ AF+ I+ M+DRI R
Sbjct: 69 LSGGDLSTLIEKPSGGNADI--EGFARTHNSRSGMSGADRSLMNAFREISIMADRINLPR 126
Query: 124 YI 125
I
Sbjct: 127 KI 128
>gi|427787821|gb|JAA59362.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 315
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC D +V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG N
Sbjct: 13 FCPD-HPDAALVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASEN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
PLL L+T+I K G F S ++QNR S+ DR L+ AF+ I+ M+DRI
Sbjct: 72 PLLNGSDLATMIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLT 130
Query: 123 RYI 125
+ I
Sbjct: 131 KTI 133
>gi|348586162|ref|XP_003478838.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-like [Cavia porcellus]
Length = 317
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 10/124 (8%)
Query: 9 CKKHTEVVF--DHSAGDTVCSEC-GLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H + + D+ AGD +C C GL++ ID SEWRTF+N+ DP RVG NP
Sbjct: 15 CPNHPDAILVEDYRAGDMICPGCRGLLVGDRVIDVGSEWRTFSNDKATKDPSRVGDAQNP 74
Query: 66 LLADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQ 121
LL++G LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LLSNGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINL 131
Query: 122 MRYI 125
R I
Sbjct: 132 PRNI 135
>gi|351694833|gb|EHA97751.1| Transcription initiation factor IIB [Heterocephalus glaber]
Length = 131
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + D+ AGD +C ECGLV ID SEWRTF+N DP +VG NPL
Sbjct: 15 CPNHPNAILVQDYRAGDMICPECGLVAGDRVIDVGSEWRTFSNGKATKDPSQVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
L++G LST+I K GA+ F ++QNR S+ D+ ++ AFK I TM+DRI
Sbjct: 75 LSNGDLSTMIGKGTGAA-SFDEFGYSKYQNRRTMSSSDQAMMNAFKEITTMADRI 128
>gi|119593565|gb|EAW73159.1| general transcription factor IIB, isoform CRA_a [Homo sapiens]
Length = 285
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
EF +S ++QNR S+ DR ++ AFK I TM+DRI R I
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNI 103
>gi|344249199|gb|EGW05303.1| Transcription initiation factor IIB [Cricetulus griseus]
Length = 285
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
EF +S ++QNR S+ DR ++ AFK I TM+DRI R I
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNI 103
>gi|449508196|ref|XP_004176261.1| PREDICTED: transcription initiation factor IIB isoform 2
[Taeniopygia guttata]
Length = 285
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+CSECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 2 ICSECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPLLSDGDLSTMIGKGTGAAS 61
Query: 85 --EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
EF +S ++QNR S+ DR ++ AFK I M+DRI R I
Sbjct: 62 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITNMADRINLPRNI 103
>gi|222632446|gb|EEE64578.1| hypothetical protein OsJ_19430 [Oryza sativa Japonica Group]
Length = 287
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 75/141 (53%), Gaps = 31/141 (21%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
A+C DC++ T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQ 121
+P L D T IA S P +G IA M+DR+G
Sbjct: 70 RADPFLPDHVGGTTIAY-------------------SSAPPKG-------IADMADRLGL 103
Query: 122 MRYIR-RWK--IKSLVEAEIK 139
+ IR R K K L EA K
Sbjct: 104 VATIRDRAKEVFKKLGEAPTK 124
>gi|291232704|ref|XP_002736287.1| PREDICTED: general transcription factor IIB-like [Saccoglossus
kowalevskii]
Length = 315
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 8 DCKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H E +V D+ AGD +CSECGLV+ +D SEWRTF+N+ DP RVG N
Sbjct: 13 NCPSHPEATLVEDYHAGDMICSECGLVVGDRVVDVGSEWRTFSNDKAQKDPCRVGESENS 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMR 123
LL+ LST+I KP G +G F ++ N+ + + DR L+ AF+ IA M+DRI +
Sbjct: 73 LLSGSNLSTIIGKPTGNAG-FNQDGSAKYHNKRTMNSSDRTLLNAFREIAQMADRINLPK 131
Query: 124 YI 125
I
Sbjct: 132 TI 133
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSE GLV+ +D SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHADALLVEDYRAGDMICSESGLVVGDRVVDVGSEWRTFSNDKAAKDPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+ G L+T+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSGGDLTTMIGKGTGAASFDEFGNS---KYQNRRAMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>gi|427777857|gb|JAA54380.1| Putative transcription initiation factor tfiib [Rhipicephalus
pulchellus]
Length = 292
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V D+ AGD +C +CGLV+ +D +EWR F+NE ++DP RVG NPLL L+T
Sbjct: 21 LVEDYRAGDMICPQCGLVVGDRIVDVGTEWRVFSNEKSNSDPARVGASENPLLNGSDLAT 80
Query: 75 VIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
+I K G F S ++QNR S+ DR L+ AF+ I+ M+DRI + I
Sbjct: 81 MIGKGTG-DASFDESGTAKYQNRKTMSSADRALMNAFREISNMADRINLTKTI 132
>gi|326500524|dbj|BAK06351.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 316
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 8/129 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA--NESGDNDPVRVGGP 62
+C +C + TEV+ DH+ GDT+C+EC LVL++H IDE SEWR FA D DP RVG
Sbjct: 14 YCPECHRATEVMLDHATGDTICTECALVLDAHYIDECSEWRNFADDGGGDDRDPSRVGAS 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFL-SSSLGRWQNRGSNP----DRGLILAFKTIATMSD 117
+P L + LSTVI N +S + +++L R R ++ + L+ F+ IA M+D
Sbjct: 74 GDPFL-NAKLSTVIVYSNKSSATGVGANALPRMSVRDADASAASENTLVDGFRGIADMAD 132
Query: 118 RIGQMRYIR 126
R+G + IR
Sbjct: 133 RLGLVATIR 141
>gi|66803286|ref|XP_635486.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
gi|74851622|sp|Q54FD6.1|TF2B_DICDI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|60463804|gb|EAL61980.1| transcription initiation factor IIB [Dictyostelium discoideum AX4]
Length = 325
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 23 CMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 83 NPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>gi|341885208|gb|EGT41143.1| hypothetical protein CAEBREN_12544 [Caenorhabditis brenneri]
Length = 254
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPVHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LTGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>gi|25396143|pir||C88922 protein W03F9.5 [imported] - Caenorhabditis elegans
Length = 148
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 72/140 (51%), Gaps = 18/140 (12%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPR-- 122
Query: 126 RRWKIKSLVEAEIKTHYWLL 145
I+ YW+L
Sbjct: 123 -----------NIQVEYWIL 131
>gi|328703015|ref|XP_001951275.2| PREDICTED: transcription initiation factor IIB-like [Acyrthosiphon
pisum]
Length = 311
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 7/123 (5%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGGPTN 64
C++H + ++ D+ AGD +CSECGLV+ ID SEWRTF+N+ G N DP RVGG N
Sbjct: 8 CQQHPDAPLIEDYRAGDQICSECGLVVGDRVIDVGSEWRTFSNDKGANSADPSRVGGAEN 67
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
PLL LST++ P+ F +++N+G + +R L+ A++ I M+DRI
Sbjct: 68 PLLNGSDLSTLVG-PSRGDASFDEFGGMKYKNKGMVCSTNRSLLNAYREIGLMADRINLP 126
Query: 123 RYI 125
R I
Sbjct: 127 RNI 129
>gi|452839736|gb|EME41675.1| hypothetical protein DOTSEDRAFT_135117 [Dothistroma septosporum
NZE10]
Length = 358
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 19/160 (11%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DC+ E+ DH++GD +C+ECGLVL+ ID +SEWRTF+N + G++DP RVG
Sbjct: 33 CKDCRTDPPELYEDHASGDLICAECGLVLQERGIDTSSEWRTFSNDDQGNDDPSRVGDGP 92
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRIG 120
N LL L+T IA +G S L R QN+ SN D+G L++A+K I + D
Sbjct: 93 NALLNGAQLNTSIAFGDG----IRSKELHRAQNK-SNLDKGNKTLLVAYKQIGALCD--- 144
Query: 121 QMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALL 160
W + S+V K Y + + K+ AL+
Sbjct: 145 ------NWDLPSMVSDTAKHLYKDADESRVFKGKSQEALI 178
>gi|384485742|gb|EIE77922.1| hypothetical protein RO3G_02626 [Rhizopus delemar RA 99-880]
Length = 340
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKIVPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D I
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAIKGERNLVQAYKEIGAMCDSI 146
>gi|384496466|gb|EIE86957.1| hypothetical protein RO3G_11668 [Rhizopus delemar RA 99-880]
Length = 292
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK +V + ++GD VC +CGLVL ID SEWRTFAN+ GD DP RVG
Sbjct: 32 MCPDCKITPPHIVEEFASGDLVCGDCGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAA 90
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
NPLL L TVI++ +G +G + L + R + +R L+ A+K I M D I
Sbjct: 91 NPLLDGNQLDTVISRRDGGTGA--AKDLNKVHGRATAVKGERNLVQAYKEIGAMCDSI 146
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H ++ D AGD +C ECGLV+ ID SEWRTF+N+ + DP RVG NP
Sbjct: 19 CCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENP 78
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRY 124
LL LST+I G AS S R ++ S+ +R LI AF+ I M+DRI +
Sbjct: 79 LLEGNDLSTIIGGVLGNASFNEDGSKKYRSKSNMSSTNRTLINAFREIGAMADRINLPKT 138
Query: 125 I 125
I
Sbjct: 139 I 139
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C +H + +V D+ AGD +C ECGLV+ +D +EWRTF+N+ D DP RVG NPL
Sbjct: 16 CTEHPDAPLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDKSDKDPSRVGASENPL 75
Query: 67 LADGGLSTVIAKPNGAS-GEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMR 123
L G LST+IA G S G ++NR + + DR LI AF+ I M DR+ R
Sbjct: 76 LEGGDLSTMIATGVGGSEGVLDEHGKPMYRNRRTLNSSDRALINAFREIGQMGDRLNLPR 135
Query: 124 YI 125
I
Sbjct: 136 MI 137
>gi|321478592|gb|EFX89549.1| hypothetical protein DAPPUDRAFT_303055 [Daphnia pulex]
Length = 311
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D AGD +CSECGLV+ +D SEWRTF+NE+G+ DP RVGG N L
Sbjct: 10 CPSHPDAPLVDDCHAGDQICSECGLVVGDRVVDVGSEWRTFSNEAGNADPSRVGGAENTL 69
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGR-WQNRG--SNPDRGLILAFKTIATMSDRIGQMR 123
L L+T+I G + + G ++NR S+ DR L+ AFK I+ M+DRI R
Sbjct: 70 LNGTNLTTMIGPSTSGGGTSFNETGGAVYKNRQTMSSSDRTLVNAFKEISNMADRINLPR 129
Query: 124 YI 125
I
Sbjct: 130 TI 131
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVGGP+
Sbjct: 29 ICPDCRDPNPNIIEEFGSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGGPS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRIG 120
+PLL G L T+I+ +G SG ++ L R +R N +R L+ AF+ I++ D+
Sbjct: 88 DPLLEGIGQLDTIISFRDGGSG--MARELQRAASRAQNTRSERNLLSAFRDISSWCDQFS 145
Query: 121 QMRYI 125
+ I
Sbjct: 146 LPKTI 150
>gi|440491617|gb|ELQ74241.1| Transcription initiation factor TFIIB [Trachipleistophora hominis]
Length = 305
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVGGP N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGGPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
PLL L T+IA G S +L R Q + + P+R LI F I+ DR
Sbjct: 69 PLLGTEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDR 120
>gi|388583858|gb|EIM24159.1| TFIIB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 336
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 9/126 (7%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + VV + S+GD VC +CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 19 ICPECQIPNPNVVEEFSSGDLVCGDCGLVLGDKVVDTRSEWRTFANDEGD-DPSRVGAAN 77
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
NPLL DG T+I+ +G +G +S L R + S+ +RGL+ AF+ I++M+D+I
Sbjct: 78 NPLL-DGVDEFETMISSRDGNTG--ISRELQRATAKSSHGRSERGLLNAFRDISSMADQI 134
Query: 120 GQMRYI 125
R I
Sbjct: 135 SLPRSI 140
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P +P
Sbjct: 7 CPHHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPY 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G ++L Q + +N DR + A I MS+R+ R I
Sbjct: 67 LSGGDLSTSIAV--GFGGSDSDNTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLPRNI 124
Query: 126 RRWKIKSLVE 135
+ + E
Sbjct: 125 QESAFRMFKE 134
>gi|452823058|gb|EME30072.1| transcription initiation factor TFIIB [Galdieria sulphuraria]
Length = 332
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V DH+ GD +C CGLV +D SEWR F N+ DP RVGGP NP
Sbjct: 25 CKECGS-DDLVEDHAQGDVICRNCGLVAAERIVDLGSEWRNFENDDSGTDPSRVGGPNNP 83
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDR 118
LL + G STVI + L++ L R QNR S DR L+ AF I+ ++R
Sbjct: 84 LL-ESGPSTVIGGGAVSDSRSLNARLNRAQNRHNTSKSDRVLLDAFSLISQYAER 137
>gi|313221394|emb|CBY32147.1| unnamed protein product [Oikopleura dioica]
gi|313236423|emb|CBY11740.1| unnamed protein product [Oikopleura dioica]
Length = 314
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C+ H + + D+ AGD +C+ECGLV+ ID SEWRTF+N+SG D RVG N
Sbjct: 13 CQYHPDAHLAEDYRAGDMICTECGLVVGDRVIDVGSEWRTFSNDSGSKDRSRVGDVENRF 72
Query: 67 LADGG--LSTVIAKP-NGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
L++ G LST+IA P NGA F S+L + + DR L A++ I M+DR+
Sbjct: 73 LSNSGSDLSTMIAAPTNGAETAF--SNLSHHRRHMNAADRALSAAYREIGAMADRM 126
>gi|310797049|gb|EFQ32510.1| transcription factor TFIIB [Glomerella graminicola M1.001]
Length = 351
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
NPLL L T IA +G S L R QN+ N + L+ A+K I D I
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSI 141
>gi|380487909|emb|CCF37735.1| transcription factor TFIIB [Colletotrichum higginsianum]
Length = 351
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 27 MCPDCKEYPPHLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
NPLL L T IA +G S L R QN+ N + L+ A+K I D I
Sbjct: 87 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSI 141
>gi|429860053|gb|ELA34805.1| transcription initiation protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 555
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 231 MCPDCKEYPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDA 290
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
NPLL L T IA +G S L R QN+ N + L+ A+K I D I
Sbjct: 291 VNPLLNGSQLETTIAFGDGRD----SKQLARLQNKSQNDKASKSLMQAYKEIGAFCDSI 345
>gi|340376818|ref|XP_003386928.1| PREDICTED: transcription initiation factor IIB-like [Amphimedon
queenslandica]
Length = 324
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + ++ D+ AGD VC ECGLV+ ID SEWRTF+NE D RVG NPL
Sbjct: 22 CNDHPDAHLIEDYHAGDMVCPECGLVVGDRVIDVGSEWRTFSNERNATDRSRVGAAENPL 81
Query: 67 LADGGLSTVIAKPNGASGEFLSS-SLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRY 124
L LS+ IA G G S S ++ G S D+ L+ AFK IA M+DR+ R
Sbjct: 82 LDGHELSSFIAPVTGRPGTNDSGKSFPKFSKSGVSAGDKSLMTAFKEIANMADRLNLPRS 141
Query: 125 I 125
I
Sbjct: 142 I 142
>gi|19115141|ref|NP_594229.1| transcription factor TFIIB [Schizosaccharomyces pombe 972h-]
gi|21362985|sp|O13749.1|TF2B_SCHPO RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|2330704|emb|CAB11044.1| transcription factor TFIIB [Schizosaccharomyces pombe]
Length = 340
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRIGQ 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D I
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 MRYI 125
+ I
Sbjct: 135 PKVI 138
>gi|452989000|gb|EME88755.1| hypothetical protein MYCFIDRAFT_159927 [Pseudocercospora fijiensis
CIRAD86]
Length = 362
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC++ ++ DH++GD +C CGLVL+ SID +SEWRTF+N + G++DP RVG
Sbjct: 31 MCRDCREDPPDLREDHASGDLICGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDG 90
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSD 117
N LL L+T IA +G S L R QN+ +N D+G L+ A+K I + D
Sbjct: 91 PNALLNGAQLNTSIAFGDGG---IRSKELHRAQNK-ANLDKGNKTLLQAYKQIGALCD 144
>gi|320168443|gb|EFW45342.1| transcription initiation factor IIB [Capsaspora owczarzaki ATCC
30864]
Length = 342
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVG 60
+ C +C++ TE++ H GD VC+ CG V+ ID SEWRTFAN+ G+ DP R+G
Sbjct: 23 ETMCPECRRPTEILESHQTGDYVCTACGTVVGDRLIDFNSEWRTFANDKGEEHGDPSRIG 82
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
NPLL L+T +A+ G + E + S + + DR L AF+ I +R+
Sbjct: 83 SAVNPLLNGSDLTTTMAQ--GFNAESKAISRAHAKTTANQIDRQLQKAFRLIGDFGERM 139
>gi|429964420|gb|ELA46418.1| hypothetical protein VCUG_02096 [Vavraia culicis 'floridensis']
Length = 305
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
FC DC+ + D G +C+ CG ++E+ IDE +EWRTF + + NDP RVG P N
Sbjct: 11 FCRDCQSDQYITDDTKTGAVLCTNCGCIIENTLIDEKTEWRTFDDSA--NDPSRVGCPNN 68
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
PLL L T+IA G S +L R Q + + P+R LI F I+ DR
Sbjct: 69 PLLESEPLDTMIAN----IGNLHSYTLNRTQMKSTMRGPERQLINGFNLISAYCDR 120
>gi|440638525|gb|ELR08444.1| transcription initiation factor TFIIB [Geomyces destructans
20631-21]
Length = 349
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 9/121 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL +D SEWRTFAN + G++DP RVG
Sbjct: 24 ICKECKEFPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRI 119
NPLL LST IA +G+ S L R QN+ ++ D+G L+ A+K I D I
Sbjct: 84 ANPLLNGSQLSTTIAFGDGSG---RSRDLQRAQNKSAH-DKGTKNLLAAYKEIGAHCDAI 139
Query: 120 G 120
G
Sbjct: 140 G 140
>gi|213404006|ref|XP_002172775.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
gi|212000822|gb|EEB06482.1| transcription factor TFIIB [Schizosaccharomyces japonicus yFS275]
Length = 339
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL +D SEWRTF+N + + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIVDTRSEWRTFSNSDEANGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRIGQ 121
NPLL L T I+ +G +G L+ + GR Q RG ++ L+ A+K I+ M D I
Sbjct: 79 ANPLLNGSQLDTSISSTDG-TGAMLAKAQGRSVQVRG---EKNLLTAYKEISAMCDAISL 134
Query: 122 MRYI 125
+ I
Sbjct: 135 PKVI 138
>gi|398404368|ref|XP_003853650.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
gi|339473533|gb|EGP88626.1| hypothetical protein MYCGRDRAFT_103549 [Zymoseptoria tritici
IPO323]
Length = 361
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC++ E+ DH++GD +C CGLVL+ SID +SEWRTF+N + G++DP RVG
Sbjct: 32 ICRDCREDPPELREDHASGDLICENCGLVLQQRSIDTSSEWRTFSNDDQGNDDPSRVGDG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
N LL L+T IA +G S L R QN+ ++ ++ L+ A+K I + D
Sbjct: 92 PNALLNGAQLNTNIAFGDGG---MRSKELHRAQNKANHDKSNKLLLQAYKQIGALCD 145
>gi|430811796|emb|CCJ30774.1| unnamed protein product [Pneumocystis jirovecii]
Length = 337
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK+ +V + S+GDTVC CGLV+ +D SEWRTFAN+ G ++ RVG
Sbjct: 23 ICPDCKEDPPNLVEEFSSGDTVCGSCGLVVGDRIVDTRSEWRTFANDEGGDNQSRVGSSA 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRI 119
NPLL L T+I+ +G G LS + GR +G +R L+ A++ I+ M D I
Sbjct: 83 NPLLNGSQLDTIISTQDGGHG--LSKTQGRSVVQKG---ERNLMSAYREISAMCDAI 134
>gi|402080319|gb|EJT75464.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 348
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + T + + S+GD VCSECGLV+ +D SEWRTFAN+ G +DP RVG +P
Sbjct: 23 CKDCDRPTALFEESSSGDLVCSECGLVVGDRIVDTRSEWRTFANDEGGDDPSRVGDAGDP 82
Query: 66 LLADGGLSTVIAKPNG--ASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDRIGQ 121
+ DG L T I G ASG +GR N+ + DRG + A +S+ + +
Sbjct: 83 IWNDGSLETKIDTSRGQNASGRI----IGRLNNANKKTQNDRGQAGLQASFAKISEHVDK 138
Query: 122 MR 123
++
Sbjct: 139 LQ 140
>gi|320582171|gb|EFW96389.1| general transcription factor TFIIB [Ogataea parapolymorpha DL-1]
Length = 338
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C +CK + E+V HS GD VC+ CGLVL S ID SEWRTFAN+ + +DP RVG
Sbjct: 18 VCPECKVYPPEIVERHSEGDIVCALCGLVLSSRIIDTRSEWRTFANDDQNGDDPSRVGEA 77
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
TN L LSTVI+ G G + L R QNR D L A+ I+ + D
Sbjct: 78 TNGALDSDQLSTVISA--GVDGNRAAKELNRIQNRSVVDRKDYALQSAYSKISQLCD--- 132
Query: 121 QMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKS 163
+++ +V+ K Y L+ ++ K+ A++ S
Sbjct: 133 ------GYQLPRVVQDGAKEVYKLVHDDKMLRGKSQEAIMAAS 169
>gi|387596531|gb|EIJ94152.1| transcription initiation factor TFIIB [Nematocida parisii ERTm1]
Length = 312
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCKK ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKKEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
L L T+I+ +G + S SL + Q + S P+R LI I +R
Sbjct: 73 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCER 123
>gi|393912489|gb|EJD76760.1| hypothetical protein LOAG_16340 [Loa loa]
Length = 453
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 153 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 212
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
LL LST IA G S S + + +N +N DR + I MS RI
Sbjct: 213 LLGSADLSTSIAVGFGGSESDYSLANAQRKNM-NNMDRQMSQGLSVIREMSARI 265
>gi|345571434|gb|EGX54248.1| hypothetical protein AOL_s00004g281 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +ID SEWRTF+N + G++DP RVG
Sbjct: 36 ICKDCKEFPPNLVEEFSSGDIVCGSCGLVLGDRTIDTRSEWRTFSNDDQGNDDPSRVGDS 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T I+ +G SG + L R QN+ ++ + L+ A+K I D
Sbjct: 96 ANPLLNGNQLDTGISFSDGGSGR--ARDLHRAQNKVTHDKSTKSLLAAYKEIGAFCD 150
>gi|407927206|gb|EKG20106.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 355
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ ++ + S+GDTVC CGLVL + +D SEWRTF+N+ + +DP RVG
Sbjct: 30 ICPDCKEQPPNLIEEFSSGDTVCGSCGLVLSARVVDTRSEWRTFSNDDQNGDDPSRVGDA 89
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
NPLL L+T I+ +GA S L R QN+ ++ L+ A+K I DR
Sbjct: 90 ANPLLNGSQLATNISYTDGAK----SRELNRAQNKSGTDKSNKSLMQAYKLIGQWCDR 143
>gi|449297000|gb|EMC93019.1| hypothetical protein BAUCODRAFT_270595 [Baudoinia compniacensis
UAMH 10762]
Length = 360
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC+ E+ DH++GD +C+ CGLVL +ID SEWRTF+N + G++DP RVG
Sbjct: 32 MCKDCRDDPPELYEDHASGDLMCANCGLVLAQRTIDMGSEWRTFSNDDQGNDDPSRVGEG 91
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
N LL L T IA +G S L R QN+ SN D +GL+ A+K I + D
Sbjct: 92 PNTLLNGAQLETGIAFGDG----IRSRELHRAQNK-SNMDKTNKGLLQAYKQIGALCD-- 144
Query: 120 GQMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALL 160
W++ S V K Y + L K+ AL+
Sbjct: 145 -------GWQLPSSVSDTAKHLYKDADESRLFRGKSQEALI 178
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 9/120 (7%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + ++V + ++GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECKDPNPQIVEEFASGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
+PL+ DG L TVI+ +G SG +S L R +R S +R L+ AF+ I+ D+
Sbjct: 90 DPLM-DGMEQLDTVISFRDGGSG--ISRELQRAASRAQSSRTERNLLTAFRDISNWCDQF 146
>gi|349804613|gb|AEQ17779.1| putative general transcription factor iib isoform 2 [Hymenochirus
curtipes]
Length = 200
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 9/107 (8%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDTQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAF 109
L+ G L+T+I K G + EF +S ++QNR S+ DR ++ +
Sbjct: 75 LSGGDLTTMIGKGTGTASFDEFGNS---KYQNRRTMSSSDRAMMNTY 118
>gi|406859255|gb|EKD12323.1| transcription factor TFIIB [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 352
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CGLVL +D SEWRTFAN + G++DP RVG
Sbjct: 24 ICKDCKEVPPNLVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
NPLL L+T I+ +G S S L R QN+ SN + L+ A+K I D +
Sbjct: 84 ANPLLNGSQLTTSISFQDGNS---RSRDLMRTQNKSSNDKSTKSLLAAYKEIGAHCDAV 139
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C++ T ++ + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG T
Sbjct: 19 ICPECREATPDIREEFGSGDLVCGACGLVLGDRIIDTRSEWRTFANDEGD-DPSRVGAAT 77
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRIG 120
+PLL L TVI+ +G SG ++ L R R GS +R ++ AF+ I+T D+
Sbjct: 78 DPLLEGIEQLDTVISFRDGGSG--VARELQRAATRAQGSRSERNILTAFRDISTRCDQFA 135
Query: 121 QMRYI 125
+ I
Sbjct: 136 LPKTI 140
>gi|312087211|ref|XP_003145382.1| transcription initiation factor IIB [Loa loa]
Length = 312
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 4 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 63
Query: 66 LLADGGLSTVIAKPNGASG----EF--LSSSLGRWQNRG-SNPDRGLILAFKTIATMSDR 118
LL LST IA G S +F L SL Q + +N DR + I MS R
Sbjct: 64 LLGSADLSTSIAVGFGGSESDYRQFIDLRCSLANAQRKNMNNMDRQMSQGLSVIREMSAR 123
Query: 119 I 119
I
Sbjct: 124 I 124
>gi|378756507|gb|EHY66531.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 308
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG V+ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 11 CPDCKEEENIIEDYKNGYNVCGSCGCVVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 68
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
L L T+I+ +G + S SL + Q + S P+R LI I +R
Sbjct: 69 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCER 119
>gi|328771004|gb|EGF81045.1| hypothetical protein BATDEDRAFT_35027 [Batrachochytrium
dendrobatidis JAM81]
Length = 335
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN--DPVRVGG 61
C DCK +V D SAGD +C CGL+L + ID SEWRTF+N S DN DP RVG
Sbjct: 31 ICRDCKDAVPNIVEDFSAGDLICGNCGLILGNRIIDTRSEWRTFSN-SDDNSGDPSRVGA 89
Query: 62 PTNPLLADGGL--STVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
++P+L G ST+I +G +G + G + L+ AFK I M +RI
Sbjct: 90 ASDPILGSKGTIDSTIIGVRDGGTGRSRELHRAHLKVIGQKGEVALLQAFKVIQAMGERI 149
Query: 120 GQMRYI 125
+ +
Sbjct: 150 SLSKIV 155
>gi|296420282|ref|XP_002839704.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635898|emb|CAZ83895.1| unnamed protein product [Tuber melanosporum]
Length = 346
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DC++ +V + S+GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 19 MCPDCREVPANIVEEFSSGDMVCGSCGLVLGDRIVDTRSEWRTFSNDDQAGD-DPSRVGD 77
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRI 119
NP L L T I+ G +G L R QN+ G +GL+ A+K I D I
Sbjct: 78 AANPFLNGAQLETTISYTPGGAGR----ELHRAQNKTAGDKSTKGLLAAYKEIGAFCDSI 133
Query: 120 GQMRYI 125
+ +
Sbjct: 134 NIQKVV 139
>gi|387594621|gb|EIJ89645.1| transcription initiation factor TFIIB [Nematocida parisii ERTm3]
Length = 312
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DCK+ ++ D+ G VC CG ++ S IDE EWRTF+ +SG+N P RVGGP NP
Sbjct: 15 CPDCKEEENIIEDYKNGYNVCGSCGCIVGSRIIDERGEWRTFS-DSGEN-PSRVGGPNNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDR 118
L L T+I+ +G + S SL + Q + S P+R LI I +R
Sbjct: 73 FLDTEQLDTLISSGSGLA----SYSLAKTQMKSSLRGPERALINGLNLITAFCER 123
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 30 ICPDCRDPSPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAI 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
+PL+ L T I+ +G SG L+ L R +RG S +R L+ AF+ I++ D+
Sbjct: 89 DPLMEGVEQLDTTISFKDGGSG--LARELQRAASRGSASRSERNLLQAFRDISSWCDQFS 146
Query: 121 QMRYI 125
+ I
Sbjct: 147 LPKTI 151
>gi|331218510|ref|XP_003321932.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300922|gb|EFP77513.1| hypothetical protein PGTG_03469 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 345
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK +V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+N
Sbjct: 28 ICPDCK-CARLVEEFSSGDLVCGSCGLVVGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSN 85
Query: 65 PLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIG 120
PLL +G T+I+ +G +G ++ L R R + N ++ + AF +I M D I
Sbjct: 86 PLL-NGVETFETIISFKDGNTG--VARDLNRAATRAAVKNGEKSVAAAFLSIQDMCDTIS 142
Query: 121 QMRYI 125
R +
Sbjct: 143 LPRTV 147
>gi|256082789|ref|XP_002577635.1| transcription initiation factor iib [Schistosoma mansoni]
gi|353230219|emb|CCD76390.1| putative transcription initiation factor iib [Schistosoma mansoni]
Length = 308
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 5/117 (4%)
Query: 8 DCKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+CK H V D AGD VCS CGLV+ ID SEWRTF+N++ D RVG N
Sbjct: 5 ECKYHPYAVLIEDSHAGDMVCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENF 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS---SLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
LL G LST+I+ P+ + L + R + S PDR L+ AF+ I+ M + +
Sbjct: 65 LLDGGDLSTMISGPSPSDSRQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHL 121
>gi|355745435|gb|EHH50060.1| hypothetical protein EGM_00825 [Macaca fascicularis]
Length = 296
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
+C +C + ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+
Sbjct: 16 LCYDC---VGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS 72
Query: 85 --EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
EF +S ++QNR S+ DR ++ AFK I TM+DRI R I
Sbjct: 73 FDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNI 114
>gi|46107428|ref|XP_380773.1| hypothetical protein FG00597.1 [Gibberella zeae PH-1]
Length = 348
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN + G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + I
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAI 135
>gi|453083300|gb|EMF11346.1| cyclin-like protein [Mycosphaerella populorum SO2202]
Length = 358
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 17/138 (12%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPTNPLL 67
C+ ++ DH++GD +C CGLVL+ SID +SEWRTF+N + G++DP RVG N LL
Sbjct: 37 CEDPPDLREDHASGDLLCGSCGLVLQERSIDTSSEWRTFSNDDQGNDDPSRVGDGPNALL 96
Query: 68 ADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRIGQMRY 124
L+T IA +G + L R QN+ +N D+G L+ A+K I + D
Sbjct: 97 NGAQLNTNIAFGDGG---MKAKDLHRAQNK-ANLDKGNKSLLQAYKQIGALCD------- 145
Query: 125 IRRWKIKSLVEAEIKTHY 142
W++ S V K Y
Sbjct: 146 --GWQLPSTVSDTAKHLY 161
>gi|408396047|gb|EKJ75215.1| hypothetical protein FPSE_04606 [Fusarium pseudograminearum CS3096]
Length = 349
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C + + D S+GDTVCS+CGLV+ S ID SEWRTFAN + G +DP RVGGP
Sbjct: 22 CPECNINPPNLVDEWSSGDTVCSDCGLVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + + LS R QN + +GL+LA+K I ++ + I
Sbjct: 82 DEFVEGQQLATTVAFSDLKAHKALS----RTQNNTTQDKAQKGLMLAYKEIVSLCEAI 135
>gi|47156969|gb|AAT12348.1| transcription initiation factor TFIIB [Antonospora locustae]
Length = 306
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + ++ D+ AG VCS CG V+ + IDE SEWR F++ + N RVG NP
Sbjct: 8 CKDCGESRNIIEDYKAGYNVCSNCGCVIGNRIIDEGSEWRNFSDANAPNLS-RVGSANNP 66
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
LL T+I+ + G LS + R RG P++ LI F I+ + DR + I
Sbjct: 67 LLDAETYDTIISTERSSFGVNLSKTQMRSSMRG--PEQALINGFNLISALCDRANMTKTI 124
Query: 126 ---RRWKIKSLVEAEI---KTHYWLLACTLLV 151
++ K++ E +I K+H +A + +
Sbjct: 125 CDRAKFNFKAVEEKKIAKSKSHKGTVAACIYI 156
>gi|402469405|gb|EJW04304.1| hypothetical protein EDEG_01428 [Edhazardia aedis USNM 41457]
Length = 305
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D+ G VC+ECG + IDE SEWR F + DP RVGGP NP
Sbjct: 11 CPNCGEDKNIIEDYKNGYNVCAECGCTIGPRIIDEGSEWRNFGDSQTGGDPSRVGGPNNP 70
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMR 123
L L T+I SG+ SL R Q + + P+R LI F + DR G
Sbjct: 71 FLETDVLDTII------SGK---DSLARTQMKSTMRGPERALINGFNLLTNYCDRNGIAM 121
Query: 124 YIR---RWKIKSLVEAEI 138
I+ + +K+++E ++
Sbjct: 122 VIQDRAKTILKTVIEKKL 139
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK + +V + +GD VC CGLVL ID SEWRTFAN+ GD DP RVG +
Sbjct: 29 ICPECKDPNPNIVEEFGSGDLVCGNCGLVLGDRVIDTRSEWRTFANDEGD-DPSRVGAAS 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRIG 120
+PLL L TVI+ +G SG ++ L R +R N +R L+ AF+ I+ D+
Sbjct: 88 DPLLEGIEQLDTVISFRDGGSG--IARELQRAASRSQNNRSERNLLTAFRDISNWCDQFS 145
Query: 121 QMRYI 125
+ I
Sbjct: 146 LPKTI 150
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 14 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 73
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
LL LST IA F S + +N DR + I MS RI
Sbjct: 74 LLGSADLSTSIAV------GFGGSETNAQRKNMNNMDRQMSQGLSVIREMSARI 121
>gi|294893167|ref|XP_002774359.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239879707|gb|EER06175.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 298
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNG--ASGEFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
+L GGL T + N A + S ++ R N+G R ++ A + R
Sbjct: 72 MLHSGGLGTSVGFGNTRLARTHMIAVNSENVDRTLNKGHKILRDIMDALALPDNIYTRCC 131
Query: 121 QMRYIRRWKIKSLVEAEIKTHY-WLLACTLL 150
Q+ +++ L++ KT+Y WLLA T +
Sbjct: 132 QI--LKQMDDNGLLKG--KTNYPWLLAVTYM 158
>gi|294953373|ref|XP_002787731.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239902755|gb|EER19527.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 332
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWRTF++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRTFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNG--ASGEFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
+L GGL T + N A + S ++ R N+G R ++ A + R
Sbjct: 72 MLHSGGLGTSVGFGNTRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALPDNIYTRCC 131
Query: 121 QMRYIRRWKIKSLVEAEIKTHY-WLLACTLL 150
Q+ +++ L++ KT+Y WLLA T +
Sbjct: 132 QI--LKQMDDNGLLKG--KTNYPWLLAVTYM 158
>gi|444512968|gb|ELV10226.1| Transcription initiation factor IIB [Tupaia chinensis]
Length = 298
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 38 IDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSSLGRWQ 95
ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S ++Q
Sbjct: 28 IDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS---KYQ 84
Query: 96 NRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
NR S+ DR ++ AFK I TM+DRI R I
Sbjct: 85 NRRTMSSSDRAMMNAFKEITTMADRINLPRNI 116
>gi|328858041|gb|EGG07155.1| hypothetical protein MELLADRAFT_43314 [Melampsora larici-populina
98AG31]
Length = 345
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ + ++V + S+GD VC CGLV+ +D SEWRTFA + GD DP RVGGP+NP
Sbjct: 29 CPDCRTY-KLVEEFSSGDLVCGTCGLVIGDRIVDTRSEWRTFAGDEGD-DPSRVGGPSNP 86
Query: 66 LLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSDRIGQ 121
LL +G T+I+ +G +G ++ L R R + ++ + AF +I M D I
Sbjct: 87 LL-NGVETFETIISFKDGNTG--VARDLNRAATRAATKSGEKSVAAAFLSIQDMCDTISL 143
Query: 122 MRYI 125
R +
Sbjct: 144 PRTV 147
>gi|443900112|dbj|GAC77439.1| transcription initiation factor TFIIB [Pseudozyma antarctica T-34]
Length = 375
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRI 119
NPLL DG L + I +G SG S L R NR + DR ++ AF+ I D I
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGSGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GQMRYI 125
R +
Sbjct: 162 HLPRTV 167
>gi|339233058|ref|XP_003381646.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
gi|316979508|gb|EFV62300.1| putative transcription factor TFIIB repeat-containing domain
protein [Trichinella spiralis]
Length = 1339
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E++ DH AGD +C ECGLV+ +D +SEWR+F+++S DP RVG P N L
Sbjct: 6 CPAHPDAELIEDHRAGDMICMECGLVVGDRIVDVSSEWRSFSSDSNSKDPSRVGSPENNL 65
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN 100
++ GGL+T IA G S E S SL Q R ++
Sbjct: 66 MSGGGLATSIA--GGGSDE--SRSLSNLQKRQAD 95
>gi|417409265|gb|JAA51147.1| Putative transcription initiation factor tfiib, partial [Desmodus
rotundus]
Length = 276
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Query: 33 LESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG--EFLSSS 90
L ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ EF +S
Sbjct: 1 LGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAASFDEFGNS- 59
Query: 91 LGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
++QNR S+ DR ++ AF+ I TM+DRI R I
Sbjct: 60 --KYQNRRTMSSSDRAMMNAFREITTMADRINLPRNI 94
>gi|294896450|ref|XP_002775563.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881786|gb|EER07379.1| transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 199
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNG--ASGEFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
+L GGL T + N A + S ++ R N+G R ++ A + R
Sbjct: 72 MLHSGGLGTSVGFGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALPDNIYTRCC 131
Query: 121 QMRYIRRWKIKSLVEAEIKTHY-WLLACTLL 150
Q+ +++ L++ KT+Y WLLA T +
Sbjct: 132 QI--LKQMDDSGLLKG--KTNYPWLLAVTYM 158
>gi|449681721|ref|XP_004209907.1| PREDICTED: transcription initiation factor IIB-like [Hydra
magnipapillata]
Length = 209
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VC ECGLV+ ID SEWRTF+NE+ D RVGG NP L LST++ +
Sbjct: 2 VCPECGLVVGDRVIDVGSEWRTFSNEANGVDRCRVGGGENPFLDGTDLSTMVGSDRASGS 61
Query: 85 EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYIRRWKIKSLVEAEIKTHY 142
R+QNR S DR L+ AF+ I TM+ RI + I I ++ + +
Sbjct: 62 GLDLQGYARYQNRSGISGSDRSLLNAFREIQTMASRINLPKTITVIYIFQRIKTGTVSKF 121
Query: 143 WLLACTLLVDKKTSHALLRK 162
+ + +K LLRK
Sbjct: 122 QIGLPDSIETRKQFKRLLRK 141
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ ++V + +GD VC+ CGLVL +D SEWRTFAN+ GD DP RVG
Sbjct: 29 ICPDCRDPVPKIVEEFGSGDLVCATCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAQ 87
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSD 117
+PLL + L+T I +G +G ++ L R +RG N +R + AF+ I+ M D
Sbjct: 88 DPLLDEQDQLATAIGFRDGNTG--VARELQRAASRGMNGARSERSIQTAFREISNMCD 143
>gi|160331633|ref|XP_001712523.1| tfIIB [Hemiselmis andersenii]
gi|159765972|gb|ABW98198.1| tfIIB [Hemiselmis andersenii]
Length = 344
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC ++ D GD +C ECGLVL SH+ID TSEWR FA++ DP R+G P +P
Sbjct: 22 CTDCGSEN-LLEDKKQGDLICFECGLVLTSHNIDFTSEWRCFADDQRGKDPTRIGDPNHP 80
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMR 123
LL + + GA+ L+ L QN+ + DR L +F I ++ +
Sbjct: 81 LLESNSGTLISKGLRGANN--LNERLATTQNQSNLQKTDRFLTQSFSKINLFLEKNFLFK 138
Query: 124 YIRRWKIKSLVEAEIKTHYWLLACTLLVD-KKTSHALLRKSALSPM 168
IK VE K+++ L TL D +T ++L + LS +
Sbjct: 139 -----GIKERVEELFKSYFDYL--TLRSDGSRTRYSLRKDETLSSI 177
>gi|388857243|emb|CCF49256.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Ustilago hordei]
Length = 375
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRI 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D I
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GQMRYI 125
R +
Sbjct: 162 HLPRTV 167
>gi|71021421|ref|XP_760941.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
gi|46101016|gb|EAK86249.1| hypothetical protein UM04794.1 [Ustilago maydis 521]
Length = 375
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 46 ICRDCKTDPPNLAEEFESGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 104
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRI 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D I
Sbjct: 105 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRNMLDAFEDIQRKCDSI 161
Query: 120 GQMRYI 125
R +
Sbjct: 162 HLPRTV 167
>gi|294896448|ref|XP_002775562.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
gi|239881785|gb|EER07378.1| Transcription initiation factor IIB, putative [Perkinsus marinus
ATCC 50983]
Length = 307
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK T++V D++ G +C CGL+LE ID++ EWR+F++ SG D RVGG TN
Sbjct: 13 CPECKGKTQIVVDYAQGSVICRNCGLILEMSCIDDSQEWRSFSDSSGP-DRNRVGGTTNN 71
Query: 66 LLADGGLSTVIAKPNG--ASGEFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
+L GGL T + N A + S ++ R N+G R ++ A + R
Sbjct: 72 MLHSGGLGTSVGFGNSRLARTHMIAVNSDNVDRTLNKGHKILRDIMDALALPDNIYTRCC 131
Query: 121 QMRYIRRWKIKSLVEAEIKTHY-WLLACTLL 150
Q+ +++ L++ KT+Y WLLA T +
Sbjct: 132 QI--LKQMDDSGLLKG--KTNYPWLLAVTYM 158
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPAIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRIG 120
+PL+ L T I+ +G SG ++ L R +R S +R L+ AF+ IA+ D+
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSG--IARELQRAASRSQASRSERNLLQAFRDIASWCDQFS 146
Query: 121 QMRYI 125
+ I
Sbjct: 147 LPKTI 151
>gi|421975925|gb|AFX72995.1| Transcription factor IIB [Spirometra erinaceieuropaei]
Length = 286
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPL LST+I+ P+ +
Sbjct: 2 VCSLCGLVVADRIIDVGSEWRTFSNDANAKDNSRVGAAENPLFEGKDLSTMISAPSRSDP 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
L L R + S PDR LI AF+ I+ M++R+
Sbjct: 62 RHLDDQGRPLYRNKRSVSGPDRALITAFREISQMAERLN 100
>gi|429961945|gb|ELA41489.1| hypothetical protein VICG_01473 [Vittaforma corneae ATCC 50505]
Length = 312
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C+DC + ++ DH +G VC CG+VL + IDETSEWR F +S +DP RVG +N
Sbjct: 13 ICTDCGETQNIIEDHRSGYNVCGNCGVVLGNRIIDETSEWRNF-EDSHKSDPSRVGSASN 71
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRY 124
P L L T+I+ G + LS + RG P R L I +R +
Sbjct: 72 PFLDSEQLDTMISAGKGMNSHTLSKIQMKNYMRG--PKRALKNGLNLIQAFCERSNICKT 129
Query: 125 I--RRWKIKSLVEAE 137
I R I +VE++
Sbjct: 130 ICDRAQHIFKMVESQ 144
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
+PL+ L T I+ +G SG L+ L R +R S +R L+ AF+ I+ D+
Sbjct: 89 DPLMEGIEQLDTTISFKDGGSG--LARELQRAASRANSSRSERNLLQAFRDISNWCDQFS 146
Query: 121 QMRYI 125
+ I
Sbjct: 147 LPKTI 151
>gi|343426216|emb|CBQ69747.1| probable SUA7-TFIIB subunit (transcription initiation factor),
factor E [Sporisorium reilianum SRZ2]
Length = 370
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + + +GD VC++CGLV+ + ID SEWRTFANE GD DP RVG +
Sbjct: 41 ICRDCKTDPPNLAEEFDSGDLVCADCGLVVGENIIDTRSEWRTFANEDGD-DPSRVGAAS 99
Query: 64 NPLLADG---GLSTVIAKPNGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSDRI 119
NPLL DG L + I +G +G S L R NR + DR ++ AF+ I D I
Sbjct: 100 NPLL-DGINEQLESRIGYRDGGTGA--SRDLQRTMNRATGTRDRHMLDAFEDIQRKCDSI 156
Query: 120 GQMRYI 125
R +
Sbjct: 157 HLPRTV 162
>gi|50547791|ref|XP_501365.1| YALI0C02563p [Yarrowia lipolytica]
gi|49647232|emb|CAG81664.1| YALI0C02563p [Yarrowia lipolytica CLIB122]
Length = 324
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C +CK ++V + GD VC +CGLVL +D SEWRTF+N + G +DP RVG
Sbjct: 12 MCPECKILPPDIVERFAEGDMVCGQCGLVLSDRVVDTRSEWRTFSNDDQGSDDPSRVGDA 71
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIG 120
NPLL L+T+I+ GA G + L R Q+R D L + I+ + D I
Sbjct: 72 MNPLLEGSQLNTIIS--FGAPGSSVGRDLNRTQSRSLQDKKDAALSAVYAKISQICDGIS 129
Query: 121 QMRYI 125
R +
Sbjct: 130 LPRVV 134
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +CK +V +S+GD VC CG+VL ID SEWRTFANE GD DP RVG +
Sbjct: 31 ICPECKDPVPNIVEQYSSGDLVCGSCGMVLGDRIIDTRSEWRTFANEEGD-DPSRVGAAS 89
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGR--WQNRGSNPDRGLILAFKTIATMSDRI 119
+PL+ DG L TVI+ +G SG L+ L R + + + ++ FK I+ D I
Sbjct: 90 DPLM-DGMEQLDTVISFQDGGSG--LARELQRASAKTQAFKDGKTMMEGFKKISQFCDSI 146
Query: 120 GQMRYI 125
+ I
Sbjct: 147 SLPKVI 152
>gi|399949697|gb|AFP65355.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 343
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D GD VC ECG+VL H +D TSEWR F+ ++ +DP+R+G P +
Sbjct: 21 CIECGSEN-LLEDMKQGDIVCKECGMVLTGHIVDFTSEWRIFSEDNKKSDPIRIGDPLHE 79
Query: 66 LLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQM 122
LL + T+I+K G G L+ L + QNRG+ DR L F I ++I
Sbjct: 80 LL-EKNPGTLISK--GLKGSNILNEKLLKTQNRGTVQKTDRFLTQVFSKIGLFLEKICLF 136
Query: 123 RYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKS 163
IK VE K ++ L TL D S LRK+
Sbjct: 137 -----MGIKKRVEEFFKLYFDYL--TLRTDGTRSRYSLRKN 170
>gi|340521242|gb|EGR51477.1| transcription factor [Trichoderma reesei QM6a]
Length = 363
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +++ + S+GD VC+ CG+V+ + ID SEWRTFAN + G +DP RVGGP
Sbjct: 37 MCPDCKEYPPDLIEEFSSGDMVCNSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGP 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN + +GL+ A+K I + + I
Sbjct: 97 QDEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETI 151
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN S +GL+ A+K I ++ + I
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNASQDKAQKGLMQAYKEIVSLCEAI 136
>gi|358379756|gb|EHK17435.1| hypothetical protein TRIVIDRAFT_182873 [Trichoderma virens Gv29-8]
Length = 356
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN + G +DP RVGGP
Sbjct: 32 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 91
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN +N D +GL+ A+K I + + I
Sbjct: 92 DEFVEGQHLATTVAFSESKAHKALS----RTQNN-ANADKAQKGLMQAYKEIVALCETI 145
>gi|358400578|gb|EHK49904.1| hypothetical protein TRIATDRAFT_297298 [Trichoderma atroviride IMI
206040]
Length = 348
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DCK++ ++ + S+GD VC CG+V+ + ID SEWRTFAN + G +DP RVGGP
Sbjct: 24 CPDCKEYPPNLIEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN + +GL+ A+K I + + I
Sbjct: 84 DEFVEGQHLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVALCETI 137
>gi|346978629|gb|EGY22081.1| transcription initiation factor IIB [Verticillium dahliae VdLs.17]
Length = 352
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRI 119
NPLL L T IA G +L R QN+ + + AF+ I+ +D I
Sbjct: 90 NPLLDGAQLETSIAFSEGRD----HKNLARIQNKSQTDKNTKAIGSAFREISAFTDSI 143
>gi|302412198|ref|XP_003003932.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
gi|261357837|gb|EEY20265.1| transcription initiation factor IIB [Verticillium albo-atrum
VaMs.102]
Length = 352
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DC++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 30 CPDCREQPPNLVEEFSSGDMVCGSCGLVVGERIIDTRSEWRTFANDDQGNDDPSRVGDAG 89
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRI 119
NPLL L T IA G +L R QN+ + + AF+ I+ +D I
Sbjct: 90 NPLLDGAQLETSIAFSEGRD----HKNLARIQNKSQTDKNTKAIGSAFREISAFTDSI 143
>gi|67537516|ref|XP_662532.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|40741816|gb|EAA61006.1| hypothetical protein AN4928.2 [Aspergillus nidulans FGSC A4]
gi|259482202|tpe|CBF76459.1| TPA: transcription initiation protein (AFU_orthologue;
AFUA_3G10620) [Aspergillus nidulans FGSC A4]
Length = 351
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG T
Sbjct: 25 ICPECKEMPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRIG 120
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSDKANKSLLAAYKEIGALCDGFG 139
>gi|258563760|ref|XP_002582625.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
gi|237908132|gb|EEP82533.1| transcription initiation factor IIB [Uncinocarpus reesii 1704]
Length = 353
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCD 138
>gi|361129570|gb|EHL01473.1| putative Transcription initiation factor IIB [Glarea lozoyensis
74030]
Length = 342
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC+ CGLVL +D SEWRTFAN + G++DP RVG
Sbjct: 24 MCKDCKEYPPNLVEEFSSGDMVCASCGLVLGERVVDSRSEWRTFANDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD--RGLILAFKTIATMSDRI 119
N LL L T IA G S L R Q + N + L+ A+K I D +
Sbjct: 84 PNVLLNGSQLQTTIAY---GDGNARSRDLLRAQGKTGNDKSTKSLLAAYKEIGAHCDAV 139
>gi|119187159|ref|XP_001244186.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|303317234|ref|XP_003068619.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108300|gb|EER26474.1| transcription initiation factor IIB, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038548|gb|EFW20483.1| transcription initiation factor IIB [Coccidioides posadasii str.
Silveira]
gi|392870902|gb|EAS32745.2| transcription initiation factor IIB [Coccidioides immitis RS]
Length = 353
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 26 ICPECKENPPNLRTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + + L R QN+ S+ +R L+ A+K I + D
Sbjct: 86 NPLLNGNQLETQISYGQGGAK---TRELHRAQNKMSSEKTNRALLAAYKEIGALCD 138
>gi|255942455|ref|XP_002561996.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586729|emb|CAP94376.1| Pc18g01520 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSD 117
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCD 135
>gi|302830488|ref|XP_002946810.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
gi|300267854|gb|EFJ52036.1| hypothetical protein VOLCADRAFT_79408 [Volvox carteri f.
nagariensis]
Length = 303
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 29 CGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFL 87
CG V ES IDE SEWRTF+++ D DP RVGGPTN LL GL+T I + G L
Sbjct: 5 CGTVKESRLIDERSEWRTFSDKDKDTTDPNRVGGPTNHLLE--GLTTTIGRERNDGG--L 60
Query: 88 SSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
S +L R R +NPDR ++ A K + M +
Sbjct: 61 SYTLNRIHARTNNPDRVIMAAMKEVGRMCE 90
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPECRDPNPNIVEQFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+PL+ L TVI+ +G SG ++ L R +R N +R ++ AF+ I + D+
Sbjct: 90 DPLMEGMEQLDTVISFRDGGSG--IARELQRAASRSQNSRSERNIMTAFRDIGSWCDQF 146
>gi|425768808|gb|EKV07320.1| Transcription initiation protein [Penicillium digitatum Pd1]
gi|425770141|gb|EKV08614.1| Transcription initiation protein [Penicillium digitatum PHI26]
Length = 350
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTN 64
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +N
Sbjct: 25 CPECKEDPPNLEFPDSHETVCGSCGLVLADREIDLHSEWRTFSNDDQNNDDPSRVGDASN 84
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSD 117
PLL L T IA +G SG + L R QN+ G ++ L+ A+K I + D
Sbjct: 85 PLLNGAQLETSIA--SGGSGR--ARDLYRAQNKQSGEKANKALLAAYKEIGALCD 135
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPT 63
C DCK+ +V + S+GD VC CG+V+ + ID SEWRTFAN+ G +DP RVGGP
Sbjct: 23 CPDCKEIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDHGGDDPSRVGGPQ 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN + +GL+ A+K I ++ + I
Sbjct: 83 DEFVEGEQLATTVAFSESKAHKALS----RTQNNANQDKAQKGLMQAYKEIVSLCEAI 136
>gi|358060583|dbj|GAA93702.1| hypothetical protein E5Q_00347 [Mixia osmundae IAM 14324]
Length = 362
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C C+ T + ++S+GD VC CGLVL +DE SEWRTFA + +DP RVGGP+
Sbjct: 32 ICPSCQDPTPNLAEEYSSGDLVCRSCGLVLSDRIVDERSEWRTFAGDEKGDDPSRVGGPS 91
Query: 64 NPLLADGG----LSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
PL GG ST+I+ +G SG + + ++ ++ L+ ++K I+ + ++I
Sbjct: 92 -PLAGLGGSADQFSTIISDRDGNSGLAKELQKAALRTQRASGEKNLVGSYKEISAVCEKI 150
>gi|385301292|gb|EIF45494.1| transcription initiation factor iib [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + E++ HS GD VC+ CGLVL H ID SEWRTF N ++GD DP RVG
Sbjct: 30 CPECKVYPPELIERHSDGDIVCALCGLVLSDHLIDSRSEWRTFNNDDQNGD-DPSRVGEA 88
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSD 117
+ +L LSTVI+ N G ++ L R Q + D L A+ I+ M D
Sbjct: 89 SASVLDSDQLSTVIS--NSQEGGRVARELNRTQGKSVADKKDHALQTAYAKISQMCD 143
>gi|162605828|ref|XP_001713429.1| transcription initiation factor IIB [Guillardia theta]
gi|13794361|gb|AAK39738.1|AF083031_95 transcription initiation factor IIB [Guillardia theta]
Length = 325
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 6 CSDC--KKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C K+ E D+ GD +C CG ++ESH ID SEWR F++++ N+PVR+G P
Sbjct: 4 CINCGSKRFLE---DYKQGDIICKNCGFIIESHIIDFGSEWRIFSDDNRSNNPVRIGLPE 60
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN 100
NPLL + ST+I+K S + ++ L + QN+ N
Sbjct: 61 NPLLGNSS-STLISKGLKGSNK-INEKLLKAQNQNDN 95
>gi|443732672|gb|ELU17299.1| hypothetical protein CAPTEDRAFT_167658 [Capitella teleta]
Length = 285
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNG-AS 83
+CS CGLV+ ID SEWRTF+NE D RVG NPLL LST+I+ G AS
Sbjct: 2 ICSVCGLVVGDRVIDVGSEWRTFSNEKNTKDASRVGSAENPLLEGADLSTMISIGTGDAS 61
Query: 84 GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
+ + R + + ++ DR ++ AFK I MSDR+ R I
Sbjct: 62 FDDQGKPVYRNRRQMNSSDRSMVNAFKEINQMSDRLNLPRMI 103
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ + ++ + +GD VC CGL+L +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 CPECRDPNPNIIEEFGSGDLVCGTCGLILGDRVVDTRSEWRTFANDEGD-DPSRVGAAID 90
Query: 65 PLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRIGQ 121
PL+ + TVI+ +G SG ++ L R +R N +R ++ AF+ I++ D+
Sbjct: 91 PLMEGMEQMDTVISYKDGGSG--VARELQRAASRSQNTRSERNMLQAFRDISSWCDQFSL 148
Query: 122 MRYI 125
+ I
Sbjct: 149 PKTI 152
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 10/119 (8%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C DC++ ++ + S+GD VC CG+V+ + ID SEWRTFAN + G +DP RVGGP
Sbjct: 24 CPDCREIPPNLIEEFSSGDVVCESCGVVVGTRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN +N D +GL+ A+K I ++ + I
Sbjct: 84 DEFVEGQQLATTVAFSESKAHKALS----RTQNN-TNQDKAQKGLMQAYKEIVSLCEAI 137
>gi|342879738|gb|EGU80975.1| hypothetical protein FOXB_08534 [Fusarium oxysporum Fo5176]
Length = 345
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C +C +V + S+GDTVC +CG+V+ S ID SEWRTFAN + G +DP RVGGP
Sbjct: 21 CPECNISPPHLVEEFSSGDTVCEDCGMVVGSRIIDTRSEWRTFANDDQGGDDPSRVGGPQ 80
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
+ + L+T +A + + LS R QN +N D +GL+ A+K I + + I
Sbjct: 81 DEFVEGQQLATTVAFSETKAHKALS----RTQNN-TNQDKSQKGLMQAYKEIVSYCEAI 134
>gi|70999680|ref|XP_754557.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|66852194|gb|EAL92519.1| transcription initiation protein [Aspergillus fumigatus Af293]
gi|159127570|gb|EDP52685.1| transcription initiation protein [Aspergillus fumigatus A1163]
Length = 422
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG T
Sbjct: 96 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 155
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D
Sbjct: 156 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCD 207
>gi|240273589|gb|EER37109.1| transcription initiation protein [Ajellomyces capsulatus H143]
gi|325087490|gb|EGC40800.1| transcription initiation protein [Ajellomyces capsulatus H88]
Length = 352
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCD 137
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 20/162 (12%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWR---TFANESGDNDPVRVG 60
C +CK + ++V + +GD VC +CGLVL +D SE TFAN+ GD DP RVG
Sbjct: 30 ICPECKDMNPKIVEEFGSGDLVCGDCGLVLGDRIVDTRSECECPHTFANDEGD-DPSRVG 88
Query: 61 GPTNPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSD 117
TNPLL L TVI+ +G SG ++ L R RGS +R ++ AF+ I+ M +
Sbjct: 89 AATNPLLEGIEQLDTVISFKDGGSG--MARELQRAAARGSVGKNERNMMTAFRDISAMCE 146
Query: 118 RIGQMRYI--------RRWKIKSLVEAEIKTHYWLLACTLLV 151
I + + +R + + +V K+ ++AC +L+
Sbjct: 147 SISLPKNVSDTAKQLYKRAEEEKIVRG--KSADAVVACCILI 186
>gi|225556484|gb|EEH04772.1| transcription initiation protein [Ajellomyces capsulatus G186AR]
Length = 352
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCD 137
>gi|154271255|ref|XP_001536481.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
gi|150409704|gb|EDN05148.1| transcription initiation factor IIB [Ajellomyces capsulatus NAm1]
Length = 352
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGSCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKALLAAYKEIGALCD 137
>gi|255716964|ref|XP_002554763.1| KLTH0F13200p [Lachancea thermotolerans]
gi|238936146|emb|CAR24326.1| KLTH0F13200p [Lachancea thermotolerans CBS 6340]
Length = 359
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKIYPPKVAERFSEGDVVCAMCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G+ +F + L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVKF-TRDLNRAQSKSIVDKKDNELQAAYAKITMMCD 142
>gi|58268740|ref|XP_571526.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227761|gb|AAW44219.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 447
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 103 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 162
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS---DRIG 120
NPLL L T+I+ +G +G ++ L R Q R + G I ++A +S RIG
Sbjct: 163 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNG-IYGKSSVAQLSAVFSRIG 219
Query: 121 Q 121
+
Sbjct: 220 E 220
>gi|405121333|gb|AFR96102.1| transcription initiation factor iib [Cryptococcus neoformans var.
grubii H99]
Length = 371
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS---DRIG 120
NPLL L T+I+ +G +G ++ L R Q R + G I ++A +S RIG
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNG-IYGKSSVAQLSAVFSRIG 143
Query: 121 Q 121
+
Sbjct: 144 E 144
>gi|134113140|ref|XP_774595.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257239|gb|EAL19948.1| hypothetical protein CNBF2750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 371
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS---DRIG 120
NPLL L T+I+ +G +G ++ L R Q R + G I ++A +S RIG
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNG-IYGKSSVAQLSAVFSRIG 143
Query: 121 Q 121
+
Sbjct: 144 E 144
>gi|449017294|dbj|BAM80696.1| transcription initiation factor IIB [Cyanidioschyzon merolae strain
10D]
Length = 377
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D GD VC++CG+V ID EWRTF N+ DP RVGG NP
Sbjct: 14 CGECGS-TDLVEDTKNGDLVCAQCGVVAAELLIDLGHEWRTFENDDSAYDPNRVGGSINP 72
Query: 66 LLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
LL D GL+T I++ P GA+ L+ L R Q+R DR + + I+ + +R G
Sbjct: 73 LL-DSGLATSISQGPAGANA--LNERLARAQSRNVLDANDRYVTECYNRISYLCERSGLP 129
Query: 123 RYIR 126
+ ++
Sbjct: 130 QLVK 133
>gi|119491805|ref|XP_001263397.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
gi|119411557|gb|EAW21500.1| transcription initiation protein [Neosartorya fischeri NRRL 181]
Length = 350
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARELYRAQNKQSSEKANKALLAAYKEIGALCD 135
>gi|58268742|ref|XP_571527.1| transcription initiation factor iib [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227762|gb|AAW44220.1| transcription initiation factor iib, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 371
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD VC++CG +L +D SEWRTFA + +DP RVG
Sbjct: 27 ICPNCRTDPPNIVEEYAKGDLVCADCGTILGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS---DRIG 120
NPLL L T+I+ +G +G ++ L R Q R + G I ++A +S RIG
Sbjct: 87 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNG-IYGKSSVAQLSAVFSRIG 143
Query: 121 Q 121
+
Sbjct: 144 E 144
>gi|302307436|ref|NP_984103.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|299789000|gb|AAS51927.2| ADR007Cp [Ashbya gossypii ATCC 10895]
gi|374107319|gb|AEY96227.1| FADR007Cp [Ashbya gossypii FDAG1]
Length = 354
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G+ + L+ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQVQGSDVK-LTRELNRAQSKSIVDKKDNELQAAYAKITMMCD 142
>gi|396491116|ref|XP_003843493.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
gi|312220072|emb|CBY00014.1| similar to transcription initiation factor iib [Leptosphaeria
maculans JN3]
Length = 368
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DC++ +V + SAGDT+C CG VL ID SEWRTF+N + G++DP R+G
Sbjct: 37 ICPDCQESPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L+T I +G L R N+ ++ ++ L A+ I+T+ D
Sbjct: 97 ANPLLHGSQLATEIGFGDGG---LRVRELSRAHNKSNHDKANKALQAAYGQISTLCD 150
>gi|121705606|ref|XP_001271066.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
gi|119399212|gb|EAW09640.1| transcription initiation protein [Aspergillus clavatus NRRL 1]
Length = 350
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG T
Sbjct: 24 ICPECREVPPNLEFPDSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAT 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG + L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 NPLLNGDQLETQIA--SGGSGR--ARDLYRAQNKQSSEKANKALLAAYKEIGALCD 135
>gi|321470096|gb|EFX81073.1| hypothetical protein DAPPUDRAFT_299541 [Daphnia pulex]
Length = 321
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 4 AFCSDCKKHTEVV--FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
C H ++ +D+ + D +C ECGLV+E D SEWRTF+ E+G+ DP ++G
Sbjct: 10 GICCPSHPHYPLIAHYDYRSSDQICPECGLVVEDRVDDVGSEWRTFSYEAGNVDPSQIGE 69
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMS 116
N LL L+T+ G L+ S +GR +NR S+ D+ L+ A+ I+ M+
Sbjct: 70 EENTLLDGSNLTTMFGPSMSGGGSLLNESGGAVGRKKNRQTMSSSDQTLVSAYNEISNMA 129
Query: 117 DRIGQMRYI 125
I R +
Sbjct: 130 VNINLPRTV 138
>gi|366996677|ref|XP_003678101.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
gi|342303972|emb|CCC71756.1| hypothetical protein NCAS_0I00880 [Naumovozyma castellii CBS 4309]
Length = 370
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G F + L R Q + D + AF I + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCD 153
>gi|115396260|ref|XP_001213769.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
gi|114193338|gb|EAU35038.1| transcription initiation factor IIB [Aspergillus terreus NIH2624]
Length = 351
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAV 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSDRIGQ 121
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D G
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCDGWGI 140
Query: 122 MRYI 125
+ +
Sbjct: 141 QKNV 144
>gi|402578359|gb|EJW72313.1| hypothetical protein WUBG_16779, partial [Wuchereria bancrofti]
Length = 85
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 8 DCKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
+C H +V DH AGD +C ECGLV+ +D +EWR+F+NE DP RVG P NP
Sbjct: 4 ECPVHPGAHLVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENP 63
Query: 66 LLADGGLSTVIAKPNGAS 83
LL LST IA G S
Sbjct: 64 LLGSADLSTSIAVGFGGS 81
>gi|50307385|ref|XP_453671.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|464871|sp|Q05959.1|TF2B_KLULA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|173289|gb|AAA35258.1| human TFIIB homologue protein [Kluyveromyces lactis]
gi|49642805|emb|CAH00767.1| KLLA0D13640p [Kluyveromyces lactis]
Length = 357
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCD 142
>gi|254565175|ref|XP_002489698.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|238029494|emb|CAY67417.1| Transcription factor TFIIB, a general transcription factor
[Komagataella pastoris GS115]
gi|328350117|emb|CCA36517.1| Transcription initiation factor IIB [Komagataella pastoris CBS
7435]
Length = 342
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGG 61
C DCK E++ S GD +C CGLVL H +D SEWRTF N ++GD DP RVG
Sbjct: 20 ICRDCKVDPPELIERFSEGDVICGLCGLVLSEHIVDMRSEWRTFNNDDQNGD-DPSRVGE 78
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSD 117
NPLL LST+IA + L R QN D L AF I+ + +
Sbjct: 79 AQNPLLDGDQLSTIIAY--NTDNTRMGRELSRAQNSTVADRKDSALQAAFAKISQLCE 134
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++V D G+ VC++CGLV+E ID EWR F N S + RVG PT
Sbjct: 31 CPECSS-TDIVKDGDRGELVCNDCGLVVEEDHIDPGPEWRAF-NHSERQEKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTQIDWKDQDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRIGQMRYIR 126
MS +G R IR
Sbjct: 149 MSSALGVPRSIR 160
>gi|326470967|gb|EGD94976.1| transcription initiation protein [Trichophyton tonsurans CBS
112818]
Length = 228
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCD 137
>gi|451847728|gb|EMD61035.1| hypothetical protein COCSADRAFT_39743 [Cochliobolus sativus ND90Pr]
Length = 366
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N + G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDDQGNDDPSRIGDA 96
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSD 117
NPLL L T I +G L R N+ SN D + L A+ I + D
Sbjct: 97 ANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCD 150
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 32 ICPDCRDPNPHIVEEFGSGDLVCGNCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 90
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
+PLL L TVI+ +G SG +++ S +R L+ AF+ I D+
Sbjct: 91 DPLLEGMEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNLLTAFRDIGGWCDQFSLP 150
Query: 123 RYI 125
+ I
Sbjct: 151 KTI 153
>gi|169770601|ref|XP_001819770.1| transcription initiation factor IIB [Aspergillus oryzae RIB40]
gi|238486960|ref|XP_002374718.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|83767629|dbj|BAE57768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699597|gb|EED55936.1| transcription initiation protein [Aspergillus flavus NRRL3357]
gi|391867301|gb|EIT76547.1| transcription initiation factor TFIIB [Aspergillus oryzae 3.042]
Length = 350
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 24 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKSLLAAYKEIGALCD 135
>gi|363752235|ref|XP_003646334.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889969|gb|AET39517.1| hypothetical protein Ecym_4477 [Eremothecium cymbalariae
DBVPG#7215]
Length = 354
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G+ + L+ L R Q++ D L ++ I M D
Sbjct: 87 SNPLLDGNHLSTRIGQAQGSDVK-LTRELNRAQSKSIVDKKDNELQASYAKITMMCD 142
>gi|269862513|ref|XP_002650868.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065496|gb|EED43190.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 311
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQ 121
+PL+ DG L T I+ +G SG ++ S +R L+ AF+ I+ D+
Sbjct: 89 DPLM-DGMEQLDTTISFRDGGSGLARELQRAASRSSASRSERNLLQAFRDISNWCDQFSL 147
Query: 122 MRYI 125
+ I
Sbjct: 148 PKTI 151
>gi|367045134|ref|XP_003652947.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
gi|347000209|gb|AEO66611.1| hypothetical protein THITE_2170336 [Thielavia terrestris NRRL 8126]
Length = 349
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC+ CGLVL ID SEWRTF+N + G++DP RVG
Sbjct: 26 MCPDCKESPPNLVEETSSGDVVCASCGLVLGERIIDSRSEWRTFSNDDQGNDDPSRVGEG 85
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRI 119
N ++ L T IA +G + + +L QN+ N D+G L+ A++ I +++D I
Sbjct: 86 PNLMIDGDQLQTAIAY-DGKNAK----NLAHLQNK-INQDKGSKALMAAYRDIQSLTDSI 139
>gi|261193976|ref|XP_002623393.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239588407|gb|EEQ71050.1| transcription initiation factor IIB [Ajellomyces dermatitidis
SLH14081]
gi|239607027|gb|EEQ84014.1| transcription initiation factor IIB [Ajellomyces dermatitidis ER-3]
gi|327354501|gb|EGE83358.1| transcription initiation factor IIB [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAA 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGNQLETQISYGAGGS---RSRELHRAQNKMSSEKTNKVLMAAYKEIGALCD 137
>gi|448412849|ref|ZP_21576740.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445667551|gb|ELZ20192.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 322
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
TD C +C H +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG
Sbjct: 23 TDEACPECSGH--LVVDDERGETVCEDCGLVVETDEIDRGPEWRAF-DASEKDEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 PTTNMMHDKGLSTNIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALG 139
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 140 EIDRMASALGLPENVR 155
>gi|269862647|ref|XP_002650920.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065412|gb|EED43136.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 310
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|295671166|ref|XP_002796130.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|225681734|gb|EEH20018.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb03]
gi|226284263|gb|EEH39829.1| transcription initiation factor IIB [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226288886|gb|EEH44398.1| transcription initiation factor IIB [Paracoccidioides brasiliensis
Pb18]
Length = 352
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPTN 64
C +C++ + + +T+C CGLVL ID+ SEWRTF+N+ +N DP RVG N
Sbjct: 26 CPECRETPPNLVTPDSHETICGTCGLVLADREIDQHSEWRTFSNDDQNNDDPSRVGDAVN 85
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
PLL L T I+ G S S L R QN+ S+ ++ L+ A+K I + D
Sbjct: 86 PLLNGNQLETQISYGVGGS---RSRDLHRAQNKMSSEKTNKTLLAAYKEIGALCD 137
>gi|269862954|ref|XP_002651040.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065224|gb|EED43015.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 277
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ + ++ + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 31 ICPDCRDPNPNIIEEFGSGDLVCGSCGLVLGDRVVDTRSEWRTFANDEGD-DPSRVGAAS 89
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
+PL+ L TVI+ +G SG +++ S +R ++ AF+ I++ D+
Sbjct: 90 DPLMEGIEQLDTVISFRDGGSGIARELQRAASRSQSSRSERNILTAFRDISSWCDQFSLP 149
Query: 123 RYI 125
+ I
Sbjct: 150 KTI 152
>gi|326482199|gb|EGE06209.1| transcription initiation factor IIB [Trichophyton equinum CBS
127.97]
Length = 352
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R Q++ S N ++ L+ A+K I ++ D
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTENTNKALLAAYKEIGSLCD 137
>gi|320589326|gb|EFX01788.1| transcription initiation protein [Grosmannia clavigera kw1407]
Length = 343
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK++ +V + S+GD VC CGLV+ ID SEWRTFAN + G++DP RVG
Sbjct: 21 ICPDCKEYPPNLVEEFSSGDMVCDSCGLVVGPRIIDSRSEWRTFANDDQGNDDPSRVGES 80
Query: 63 TNPLLADGGLSTVI--AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
N L D GL T + NG L+S + Q+ N D L ++ I+T+ D
Sbjct: 81 ANALANDEGLRTQVDMRAANGRLAGKLNSINKKSQSEKLNSD--LQEGYRAISTLVD 135
>gi|154292104|ref|XP_001546629.1| hypothetical protein BC1G_14861 [Botryotinia fuckeliana B05.10]
Length = 348
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N + G++DP RVG
Sbjct: 21 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRI 119
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 81 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAV 136
>gi|347835786|emb|CCD50358.1| similar to transcription initiation factor iib [Botryotinia
fuckeliana]
Length = 350
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N + G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRI 119
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAV 137
>gi|145232671|ref|XP_001399760.1| transcription initiation factor IIB [Aspergillus niger CBS 513.88]
gi|134056679|emb|CAK37672.1| unnamed protein product [Aspergillus niger]
gi|358365509|dbj|GAA82131.1| transcription initiation protein [Aspergillus kawachii IFO 4308]
Length = 351
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAM 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCD 136
>gi|156062044|ref|XP_001596944.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980]
gi|154696474|gb|EDN96212.1| hypothetical protein SS1G_01136 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 350
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ +V + S+GD VC CG+V+ +D SEWRTF+N + G++DP RVG
Sbjct: 22 MCKDCKEIPPNLVEEFSSGDLVCDTCGVVIGDRIVDTRSEWRTFSNDDQGNDDPSRVGDA 81
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPD-RGLILAFKTIATMSDRI 119
NPLL LST IA + + S L R Q + G++ + L+ A+K I D +
Sbjct: 82 ANPLLNGSQLSTTIAFGDSS---VRSRELYRAQGKQGTDKSTKALLAAYKEIGAHCDAV 137
>gi|296824618|ref|XP_002850683.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
gi|238838237|gb|EEQ27899.1| transcription initiation factor IIB [Arthroderma otae CBS 113480]
Length = 352
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R QN+ S ++ L+ A+K I ++ D
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQNKMSTEKTNKALLAAYKEIGSLCD 137
>gi|350634612|gb|EHA22974.1| hypothetical protein ASPNIDRAFT_206867 [Aspergillus niger ATCC
1015]
Length = 351
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG
Sbjct: 25 ICPECKEVPPNLEFPGSHETVCGSCGLVLADREIDMHSEWRTFSNDDQNNDDPSRVGDAM 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN--PDRGLILAFKTIATMSD 117
NPLL L T IA +G SG L R QN+ S+ ++ L+ A+K I + D
Sbjct: 85 NPLLNGDQLETQIA--SGGSGRV--RDLYRAQNKQSSEKANKALLAAYKEIGALCD 136
>gi|340960457|gb|EGS21638.1| hypothetical protein CTHT_0035020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 352
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C DCK+ ++ + S+GD VC CGLV+ ID SEWRTF+N + G++DP RVG
Sbjct: 28 ICKDCKEFPPNLIEEFSSGDMVCGSCGLVVGDRIIDTRSEWRTFSNDDQGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRI 119
N ++ L T IA G + LS + Q++ S + L+ A++ I +++D I
Sbjct: 88 PNLMIDGDQLQTTIAYGEGKNARNLSHLQNKVNQDKAS---KALLQAYRDIQSLTDSI 142
>gi|257388456|ref|YP_003178229.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170763|gb|ACV48522.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 324
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
++ C +C HT++ +H G+TVC ECGLV+E ID EWR F + S + RVG P
Sbjct: 28 ESLCPECGGHTQLDAEH--GETVCEECGLVVEEDEIDHGPEWRAF-DASERDSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSSS L W R D R L A
Sbjct: 85 TTKMMHDKGLSTNIGWQDKDAYGNSLSSSQRQKMQRLRTWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G + +R
Sbjct: 145 IDRMASALGLPKNVR 159
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C +V D + G+ +C +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CTECASRN-LVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQR-ARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ +SS + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRIGQMRYIR 126
M+ R+ + IR
Sbjct: 130 MASRLDLPKSIR 141
>gi|410084090|ref|XP_003959622.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
gi|372466214|emb|CCF60487.1| hypothetical protein KAFR_0K01330 [Kazachstania africana CBS 2517]
Length = 355
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +C+ + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 24 CPECRVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G F + L R Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCD 138
>gi|269862581|ref|XP_002650895.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220065455|gb|EED43163.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 252
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|357155150|ref|XP_003577025.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 293
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRT---FANESGDNDPV 57
M ++C DC T +VFD ++GDT+CSECGLVL+SH I+E + T FA++ + DP
Sbjct: 1 MESSYCKDCNLSTVIVFDRASGDTICSECGLVLDSHYIEEKANPHTFTHFASKDDNYDPF 60
Query: 58 RVGGPTNPLLADGGLSTVIAKPNGASGEF---LSSSLGRWQNRGSNPDRGLILAFKTIAT 114
VG T+ L + + + + F L S+ + ++ N AF IA
Sbjct: 61 CVGDSTSNLESKHDSTILWPEVFDNRRSFCGNLQKSVDFYSHQSDN-------AFNYIAD 113
Query: 115 MSDRIG 120
M+DR+G
Sbjct: 114 MADRLG 119
>gi|344231613|gb|EGV63495.1| hypothetical protein CANTEDRAFT_114798 [Candida tenuis ATCC 10573]
Length = 344
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 24 CPDCKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ + + L R Q++ D L AF I+ M D
Sbjct: 84 NPLLDHENLSTMIS--HSPDSLRIGRELSRAQSKSLVDKKDNALAAAFAKISQMCD 137
>gi|269865142|ref|XP_002651819.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220063817|gb|EED42238.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 138
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|346322890|gb|EGX92488.1| transcription initiation protein [Cordyceps militaris CM01]
Length = 347
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
+ + L+T +A S +L R QN +N D RGL+ A+K I ++ + I
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQNN-TNQDKQQRGLMQAYKEIVSLCEAI 137
>gi|269866459|ref|XP_002652280.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
gi|220062817|gb|EED41774.1| transcription initiation factor IIB [Enterocytozoon bieneusi H348]
Length = 175
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C++C + V+ D+ G VC +CG V +DE EWR F+ +S DP RVG NP
Sbjct: 14 CNECGEVNSVIEDYRNGFNVCGKCGCVFREKIVDEGGEWRNFS-DSTKGDPSRVGSAINP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQ--NRGSNPDRGLILAFKTIATMSDR 118
L L TVI+ +GA+ S +L R Q N PDR L FK I + +R
Sbjct: 73 FLDVEQLDTVISAGSGAN----SYNLNRIQMKNYMRGPDRVLKNGFKLIQSFCER 123
>gi|386874567|ref|ZP_10116805.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807600|gb|EIJ66981.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 315
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DGICGRCGKNS-MLTDNVTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-TDPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
T+ + D GL+T+I N ASG+ LS+S L W +R ++ DR L A
Sbjct: 71 TSLTMHDRGLATIINPANKDASGKPLSTSMKSTIERLRTWDSRSKVNASSDRNLRQALSE 130
Query: 112 IATMSDRI 119
+AT+ D++
Sbjct: 131 LATLKDKL 138
>gi|390370561|ref|XP_796144.3| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 102
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 42/72 (58%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C H ++ D AGD +C ECGLV+ ID SEWRTF+N+ + DP RVG NP
Sbjct: 5 CCPSHPHANLIEDSHAGDLICPECGLVVADRVIDVGSEWRTFSNDKANIDPSRVGAAENP 64
Query: 66 LLADGGLSTVIA 77
LL LST+I
Sbjct: 65 LLEGNDLSTIIG 76
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D G++VC+ECGLV+E SID EWR F + D+ RVG PT
Sbjct: 32 CPECSGR--VVNDEEHGESVCTECGLVVEEDSIDRGPEWRAFNSNEKDSKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRIGQMRYIR 126
MS +G + +R
Sbjct: 149 MSSALGLPKEVR 160
>gi|190344839|gb|EDK36597.2| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 10/116 (8%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATM 115
NPLL LST+I+ PN G +G LS R Q++ + D L+ A+ I+ M
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLS----RAQSKSAIDRKDSSLVAAYSKISHM 136
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ D G+ VC++CGLV++ SID EWR F N S RVG P
Sbjct: 24 CPECD-STDIITDADQGELVCNDCGLVIDERSIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|156844090|ref|XP_001645109.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156115766|gb|EDO17251.1| hypothetical protein Kpol_538p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 357
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 26 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 86 NPLLDGNNLSTRIGQGESTDVRF-TKELNRAQGKNVVDKKDNEVQAAFAKITMLCD 140
>gi|365982759|ref|XP_003668213.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
gi|343766979|emb|CCD22970.1| hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Length = 400
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 39 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGD-DPSRVGEA 97
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + G F + L R Q + D + AF + + D
Sbjct: 98 SNPLLDGNNLSTRIGQGEGTDMRF-TKELNRAQGKNIVDKKDNEVQAAFAKMTMLCD 153
>gi|303389676|ref|XP_003073070.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302214|gb|ADM11710.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 312
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CTDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
L L T+I+ G + LS + RG P+R L I +R
Sbjct: 73 YLESEQLDTIISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCER 123
>gi|401826726|ref|XP_003887456.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
gi|337263124|gb|AEI69273.1| transcription initiation factor TFIIB [Encephalitozoon hellem]
gi|395459974|gb|AFM98475.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon hellem ATCC 50504]
Length = 312
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG V+ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCVVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
L L T+I+ G + LS + RG P+R L I +R
Sbjct: 73 YLESEQLDTMISTGGGMNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCER 123
>gi|403214076|emb|CCK68577.1| hypothetical protein KNAG_0B01300 [Kazachstania naganishii CBS
8797]
Length = 369
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHTEVVFDHSA-GDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + + + A GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 37 CPECKVYPPKIVERFAEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 95
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I + F + L R Q + D + AF I +SD
Sbjct: 96 SNPLLDGNNLSTRIGQGENTDMRF-TKELNRAQGKNVVDKKDNEVHAAFAKITMLSD 151
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + + G+ VC ECGLV+E+ +ID EWR F N S N RVG PT
Sbjct: 25 CDECGS-SALTTSEDQGELVCEECGLVIETRNIDRGPEWRAF-NHSERNSKSRVGAPTTK 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 143 MASALGVPRSVR 154
>gi|337263062|gb|AEI69242.1| transcription initiation factor TFIIB [Encephalitozoon romaleae]
gi|396081581|gb|AFN83197.1| transcription initiation factor TFIIB subunit Brf1 [Encephalitozoon
romaleae SJ-2008]
Length = 312
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + ++ D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIIEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
L L T+I+ G + LS + RG P+R L I +R
Sbjct: 73 YLESEQLDTMISTGGGVNSYMLSKIQMKNSMRG--PERALKHGMNLITAFCER 123
>gi|336270348|ref|XP_003349933.1| hypothetical protein SMAC_00825 [Sordaria macrospora k-hell]
gi|380095322|emb|CCC06795.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 348
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C +CK+ +V + S+GD VC +CGLVL ID SEWRTF+N + G++DP RVG
Sbjct: 24 ICPECKEDPPHLVEEFSSGDMVCGDCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRI 119
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D I
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSI 137
>gi|366998229|ref|XP_003683851.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
gi|357522146|emb|CCE61417.1| hypothetical protein TPHA_0A03400 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 24 CPECKVYPPKVVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAA 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 84 NPLLDGNNLSTRIGQGESTDMRF-TKELNRAQGKNVMDKKDHEVQAAFAKITMLCD 138
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T V+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNVITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|19074360|ref|NP_585866.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|51702029|sp|Q8SRP3.1|TF2B_ENCCU RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|19069002|emb|CAD25470.1| TRANSCRIPTION INITIATION FACTOR TFIIB [Encephalitozoon cuniculi
GB-M1]
gi|449329432|gb|AGE95704.1| transcription initiation factor TFIIB [Encephalitozoon cuniculi]
Length = 312
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
L L T+I+ G + LS + RG P+R L I +R R I
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC + + D + G+ VC +CGLVLE + ID+ +EWR F+ E GD R G P
Sbjct: 12 CGDCGSRS-LTRDETRGEVVCEDCGLVLEDNVIDQGAEWRVFSPEQGDQ-RARTGAPMTV 69
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D GLST I N SG+ ++S + +WQ R SN +R L +A +
Sbjct: 70 MLHDKGLSTDIDWQNKDYSGKTINSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDR 129
Query: 115 MSDRI 119
M+ R+
Sbjct: 130 MASRL 134
>gi|345005621|ref|YP_004808474.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321247|gb|AEN06101.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G+T C ECGLVL+ SID EWRTF E D + RVG PT
Sbjct: 28 CPECDG--QVIRDDEHGETTCEECGLVLDDVSIDRGPEWRTFDGEEKD-EKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ L W R D R L AF I+
Sbjct: 85 LMHDKGLSTTIGWQNKDAYGQAVSNRKRARLQRLRTWDERFRTKDAHERNLKQAFGEISR 144
Query: 115 MS 116
M+
Sbjct: 145 MA 146
>gi|146422766|ref|XP_001487318.1| hypothetical protein PGUG_00695 [Meyerozyma guilliermondii ATCC
6260]
Length = 339
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + DP RVG +
Sbjct: 25 CPECKTYPPDLIERFSEGDIVCGTCGLVLSDRVVDTRSEWRTFSNDDRNGEDPNRVGDAS 84
Query: 64 NPLLADGGLSTVIAK-PN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATM 115
NPLL LST+I+ PN G +G LS + + ++ D L+ A+ I+ M
Sbjct: 85 NPLLDSEDLSTMISYVPNDGRAGRDLSRA--QLKSAIDRKDSSLVAAYSKISHM 136
>gi|400595996|gb|EJP63780.1| transcription factor TFIIB [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 6 CSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C DC++ +V + S+GD VC CG+V+ + ID SEWRTFAN ++GD DP RVGGP
Sbjct: 24 CPDCREIPPNLVEEFSSGDMVCQSCGVVVGTRIIDTRSEWRTFANDDQNGD-DPSRVGGP 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSDRI 119
+ + L+T +A S +L R QN +N D +GL+ A+K I ++ + I
Sbjct: 83 QDEFVEGQQLATSVA----FSESRQHKNLLRVQNN-TNQDKQQKGLMQAYKEIVSLCEAI 137
>gi|444317851|ref|XP_004179583.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
gi|387512624|emb|CCH60064.1| hypothetical protein TBLA_0C02540 [Tetrapisispora blattae CBS 6284]
Length = 357
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + + + S GD VC+ CGLVL ID SEWRTF+N+ + +DP RVG +
Sbjct: 28 CPECKVYPPKIIERFSEGDVVCALCGLVLSDKLIDTRSEWRTFSNDDQNGDDPSRVGEAS 87
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 88 NPLLDGNNLSTRIGQGETTDSRF-TKELNRAQGKNIVDKKDNEVQSAFAKITMLCD 142
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|281209229|gb|EFA83402.1| transcription initiation factor IIB [Polysphondylium pallidum
PN500]
Length = 298
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
FC +CK T ++V D++ GD +C +CG V+ IDE +++R FA+ DN RVG
Sbjct: 24 FCDNCKSETPDIVEDYARGDLICRDCGYVVSDRIIDEGADFRNFADSLDDNS--RVGYTA 81
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRIG 120
+PLL L+T I+ +P+ +S S+L R Q++ S ++ LI F I ++D
Sbjct: 82 DPLLRVADLTTTISYQPSTSSSSTTGSNLARQQSKINTSQSNKNLISGFSEIERIADHFA 141
Query: 121 QMRY 124
Y
Sbjct: 142 AAFY 145
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C EV+ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 25 CPECSSE-EVITDDDQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 83 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 142
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 143 MASALGVPRSVR 154
>gi|336471507|gb|EGO59668.1| hypothetical protein NEUTE1DRAFT_39488 [Neurospora tetrasperma FGSC
2508]
gi|350292608|gb|EGZ73803.1| cyclin-like protein [Neurospora tetrasperma FGSC 2509]
Length = 348
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N + G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRI 119
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D I
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSI 137
>gi|85068255|ref|XP_962143.1| hypothetical protein NCU07289 [Neurospora crassa OR74A]
gi|28923740|gb|EAA32907.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 348
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C +CK+ +V + S+GD VC CGLVL ID SEWRTF+N + G++DP RVG
Sbjct: 24 MCPECKEDPPHLVEEFSSGDMVCGSCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 83
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRW-QNRGSNPDRGLILAFKTIATMSDRI 119
N L+ L T IA +G +G+ LS + Q++ S + L+ A++ I ++D I
Sbjct: 84 PNQLIDGDQLQTTIAF-DGKNGKNLSHLQNKITQDKNS---KQLMQAYRDIQGLTDSI 137
>gi|50292269|ref|XP_448567.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527879|emb|CAG61530.1| unnamed protein product [Candida glabrata]
Length = 363
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 25 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I + F + L R Q + D + AF I + D
Sbjct: 85 NPLLDGNNLSTKIGQGETTDMRF-TKELNRAQGKNVLDKKDNEIQAAFAKITMLCD 139
>gi|302508303|ref|XP_003016112.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|302659336|ref|XP_003021359.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
gi|291179681|gb|EFE35467.1| hypothetical protein ARB_05509 [Arthroderma benhamiae CBS 112371]
gi|291185255|gb|EFE40741.1| hypothetical protein TRV_04514 [Trichophyton verrucosum HKI 0517]
Length = 338
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 12 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 70
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D
Sbjct: 71 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCD 123
>gi|327307312|ref|XP_003238347.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
gi|326458603|gb|EGD84056.1| transcription initiation factor IIB [Trichophyton rubrum CBS
118892]
Length = 352
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCD 137
>gi|315055443|ref|XP_003177096.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
gi|311338942|gb|EFQ98144.1| transcription initiation factor IIB [Arthroderma gypseum CBS
118893]
Length = 352
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK++ + S +T+C CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 26 ICPECKENPPNLVPESH-ETICGSCGLVLADREIDPHSEWRTFSNDDQNNDDPSRVGDAS 84
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
NPLL L T I+ G + S L R Q++ S ++ L+ A+K I ++ D
Sbjct: 85 NPLLNGNQLETQISFGTGGA---RSRELHRAQSKMSTEKTNKALLAAYKEIGSLCD 137
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T ++ D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 11 CPECE-STNIITDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 68
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 69 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 128
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 129 MASALGVPRSVR 140
>gi|401623146|gb|EJS41253.1| sua7p [Saccharomyces arboricola H-6]
Length = 345
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>gi|448086815|ref|XP_004196195.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359377617|emb|CCE86000.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 89 NPLLDSEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKISQMC 141
Query: 117 D 117
D
Sbjct: 142 D 142
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C ++V D G+TVC ECGLV+E SID EWR F N + ++ RVG P
Sbjct: 31 DIACPEC--SGDLVVDEERGETVCGECGLVVEEDSIDRGPEWRAF-NATENDQKSRVGAP 87
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I N A G LS L +W R ++ +R L A
Sbjct: 88 TTNMMHDKGLSTNIGWQNKDAYGNSLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 147
Query: 112 IATMSDRIG 120
I MS +G
Sbjct: 148 IERMSSALG 156
>gi|51013915|gb|AAT93251.1| YPR086W [Saccharomyces cerevisiae]
Length = 345
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>gi|151942867|gb|EDN61213.1| TFIIB [Saccharomyces cerevisiae YJM789]
gi|190408019|gb|EDV11284.1| transcription initiation factor IIB [Saccharomyces cerevisiae
RM11-1a]
gi|256272187|gb|EEU07182.1| Sua7p [Saccharomyces cerevisiae JAY291]
gi|259150239|emb|CAY87042.1| Sua7p [Saccharomyces cerevisiae EC1118]
gi|323306830|gb|EGA60115.1| Sua7p [Saccharomyces cerevisiae FostersO]
gi|323331334|gb|EGA72752.1| Sua7p [Saccharomyces cerevisiae AWRI796]
gi|323335165|gb|EGA76455.1| Sua7p [Saccharomyces cerevisiae Vin13]
gi|323346315|gb|EGA80605.1| Sua7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323350223|gb|EGA84370.1| Sua7p [Saccharomyces cerevisiae VL3]
gi|349581892|dbj|GAA27049.1| K7_Sua7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762560|gb|EHN04094.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 345
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>gi|6325343|ref|NP_015411.1| Sua7p [Saccharomyces cerevisiae S288c]
gi|135633|sp|P29055.1|TF2B_YEAST RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB; AltName:
Full=Transcription factor E
gi|269914562|pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|414145458|pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145471|pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172777|gb|AAA35126.1| Sua7 [Saccharomyces cerevisiae]
gi|1230692|gb|AAB68135.1| Sua7p: Transcription initiation factor IIB (Swiss Prot. accession
number P29055) [Saccharomyces cerevisiae]
gi|285815612|tpg|DAA11504.1| TPA: Sua7p [Saccharomyces cerevisiae S288c]
gi|392296094|gb|EIW07197.1| Sua7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 345
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>gi|347975957|ref|XP_003437308.1| unnamed protein product [Podospora anserina S mat+]
gi|170940166|emb|CAP65393.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
C++CK+ ++ + S+GD VC CGLVL ID SEWRTF+N + G++DP RVG
Sbjct: 25 MCAECKEFPPNLIEEFSSGDMVCESCGLVLGERIIDTRSEWRTFSNDDQGNDDPSRVGDG 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRI 119
N ++ L T IA +G + LS QN+ +N D+G L+ A++ I + +D I
Sbjct: 85 PNLMIDGDQLQTTIAF-DGKGAKNLS----HLQNKMTN-DKGSKQLLNAYRDIQSFTDSI 138
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 83 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 115 MSDRIGQMRYIR 126
MS +G R +R
Sbjct: 143 MSSALGVPRSVR 154
>gi|365757889|gb|EHM99760.1| Sua7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 352
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
>gi|207340326|gb|EDZ68710.1| YPR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 331
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 10 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 68
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 69 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 124
>gi|226482608|emb|CAX73903.1| Transcription factor IIB [Schistosoma japonicum]
Length = 286
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGAGENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLSSS---LGRWQNRGSNPDRGLILAFKTIATMSDRI 119
L + + R + S PDR L+ AF+ I+ M + +
Sbjct: 62 RQLDENGKPMYRNRRNMSAPDRVLLSAFREISQMGEHL 99
>gi|401842172|gb|EJT44429.1| SUA7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 345
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEAS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 84 NPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVHAAFAKITMLCD 138
>gi|367022010|ref|XP_003660290.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
gi|347007557|gb|AEO55045.1| hypothetical protein MYCTH_2132560 [Myceliophthora thermophila ATCC
42464]
Length = 356
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 12/120 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C DCK+ +V ++S+GD VC+ CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 29 ICPDCKEEPPNLVEEYSSGDMVCASCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRI 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D I
Sbjct: 88 PNLMIDGDQLQTSIAFDGKG-----AKNLAHLQNK-VNQDKGTKALLQAYRDIQALTDSI 141
>gi|403350014|gb|EJY74453.1| Transcription initiation factor IIB [Oxytricha trifallax]
Length = 388
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 10/96 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVRVGGPT 63
C +CK+ +V +H G VC CGLV S ID++SEWRTF++E+ G ++P RVGG
Sbjct: 91 CDECKRAM-LVTNHVEGTLVCQGCGLVQLSRIIDDSSEWRTFSSETSNGGSNPSRVGGKL 149
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS 99
NP L++ G+ T + GA S + +W +R S
Sbjct: 150 NPYLSNHGIDTQVTG-KGA------SEIQKWSDRSS 178
>gi|254577986|ref|XP_002494979.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
gi|238937869|emb|CAR26046.1| ZYRO0B00528p [Zygosaccharomyces rouxii]
Length = 357
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 26 CPECKVYPPKIVERFSEGDVVCALCGLVLSDRLVDTRSEWRTFSNDDQNGD-DPSRVGEA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I G+ + L R Q + D L F + + D
Sbjct: 85 SNPLLDGNSLSTRIGSAEGSDAR-TTRDLNRAQGKNVMDKKDNELQAVFAKLTMLCD 140
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELVCQDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +VV D G+ VC++CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECES-GDVVTDADQGELVCNDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|256082791|ref|XP_002577636.1| transcription initiation factor IIB (TFIIB) [Schistosoma mansoni]
gi|353230220|emb|CCD76391.1| putative transcription initiation factor IIB (TFIIB) [Schistosoma
mansoni]
Length = 286
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG N LL G LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGATENFLLDGGDLSTMISGPSPSDS 61
Query: 85 EFLSS---SLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
L + R + S PDR L+ AF+ I+ M + +
Sbjct: 62 RQLDEHGKPMYRNRRNISAPDRVLLSAFREISQMGEHL 99
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +E + G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CPECE--SESISSDGGGELVCEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|451996801|gb|EMD89267.1| hypothetical protein COCHEDRAFT_1205430 [Cochliobolus
heterostrophus C5]
Length = 375
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE----------SGD 53
C DCK++ +V + SAGDT+C CG VL ID SEWRTF+N+ G+
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLADRIIDTRSEWRTFSNDGKWRPLTCTNQGN 96
Query: 54 NDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFK 110
+DP R+G NPLL L T I +G L R N+ SN D + L A+
Sbjct: 97 DDPSRIGDAANPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYG 152
Query: 111 TIATMSD 117
I + D
Sbjct: 153 QITALCD 159
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +VV D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QVVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 141 MASALGVPRSVR 152
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V HS G+ VC +CGLVL+ +ID EWR F N++ + RVG PT
Sbjct: 28 CPECSSDSIV---HSGGELVCDDCGLVLDEQNIDRGPEWRAF-NQNERDSKSRVGAPTTK 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R R
Sbjct: 144 MASALGAPRSTR 155
>gi|448082287|ref|XP_004195101.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
gi|359376523|emb|CCE87105.1| Piso0_005644 [Millerozyma farinosa CBS 7064]
Length = 350
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 29 CPECKIYPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 88
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 89 NPLLDSEDLSTMISYVPDNTKA---GRELNRAQSKSLVDKKDNALAAAYAKISQMCD 142
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRIGQMRYIR 126
MS +G R +R
Sbjct: 147 MSSALGVPRSVR 158
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +CK HT +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECKSHT-LVRDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLSRNVR 170
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|110667584|ref|YP_657395.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803024|ref|YP_005839424.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625331|emb|CAJ51753.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728516|emb|CCC39669.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 369
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ TE++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 65 CPECES-TELITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 122
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 123 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 182
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 183 MASALGLPESVR 194
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 23 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 81 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 141 MASALGVPRSVR 152
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 134 MASALGVPRSVR 145
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|254580795|ref|XP_002496383.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
gi|238939274|emb|CAR27450.1| ZYRO0C17116p [Zygosaccharomyces rouxii]
Length = 346
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKVYPPKIVERFSEGDCVCALCGLVLSDRLVDTRSEWRTFSNDDQNGDDPSRVGEAA 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR 97
NPLL LST I + G + L R Q++
Sbjct: 83 NPLLDGNSLSTRIGQGEGGDAR-ATRDLNRAQSK 115
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+ VC +CGLVL+ ID EWR F N S RVG P
Sbjct: 24 CPECGSD-QIVTDADQGELVCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 16 CPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 74 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 133
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 134 MASALGVPRSVR 145
>gi|242780523|ref|XP_002479613.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
gi|218719760|gb|EED19179.1| transcription initiation protein [Talaromyces stipitatus ATCC
10500]
Length = 328
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 24 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 83
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D
Sbjct: 84 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCD 135
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 26 CPECESEN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|448519650|ref|XP_003868125.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis Co 90-125]
gi|380352464|emb|CCG22690.1| hypothetical protein CORT_0B09860 [Candida orthopsilosis]
Length = 353
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I+ P+ +S GR NR + D L A+ I+ M
Sbjct: 91 NPLLDTEDLSTMISYVPD-------NSKAGRELNRAQSKSLVDKKDNALAAAYAKISQMC 143
Query: 117 D 117
D
Sbjct: 144 D 144
>gi|212526306|ref|XP_002143310.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
gi|210072708|gb|EEA26795.1| transcription initiation protein [Talaromyces marneffei ATCC 18224]
Length = 341
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVGGPT 63
C +CK+ + + +TVC CGLVL ID SEWRTF+N+ +N DP RVG +
Sbjct: 22 ICPECKEFPPNLEFPGSHETVCGSCGLVLADREIDIHSEWRTFSNDDQNNDDPSRVGETS 81
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNP--DRGLILAFKTIATMSD 117
N LL L T IA GA+G + L R QN+ S+ ++ L+ A+K I + D
Sbjct: 82 NILLNGNQLETSIA--GGATGA--ARQLYRAQNKLSSEKNNKALMAAYKEIGALCD 133
>gi|300708774|ref|XP_002996560.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
gi|239605871|gb|EEQ82889.1| hypothetical protein NCER_100338 [Nosema ceranae BRL01]
Length = 333
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC + ++ D+ G VC CG V+ + IDE+SEWR+F+ +S DP R G +NP
Sbjct: 35 CTDCGETQNIIEDYRNGYNVCGRCGCVVGNRIIDESSEWRSFS-DSNKADPCRTGSVSNP 93
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDR 118
L L T+I+ G S L + RG P+R L I +R
Sbjct: 94 FLDTEQLDTMISSVPGTSSYNLQKIQLKTAMRG--PERSLKHGINLITAFCER 144
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV++ + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSET-LVSDSEHGETVCDECGLVVQENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 167 MASALGLPESVR 178
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+TVC +CGLV+E + ID EWR F N S N RVG PT
Sbjct: 19 CPECESDA-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 137 MASALGLPENVR 148
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC +CGLV+E + ID EWR F N + N RVG PT
Sbjct: 19 CPECESES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSTEKNQKSRVGAPTTN 76
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 136
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 137 MASALGLPENVR 148
>gi|241948569|ref|XP_002417007.1| general transcription factor TFIIB, putative; transcription factor
E, putative; transcription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223640345|emb|CAX44595.1| general transcription factor TFIIB, putative [Candida dubliniensis
CD36]
Length = 344
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I+ P+ S+ GR NR + D L A+ I+ M
Sbjct: 83 NPLLDTEDLSTMISYAPD-------STKAGRELNRAQSKSLVDKKDNALAAAYIKISQMC 135
Query: 117 D 117
D
Sbjct: 136 D 136
>gi|21363041|sp|Q9NHP7.1|TF2B_DROVI RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|8050578|gb|AAF71709.1| transcription factor TFIIB [Drosophila virilis]
Length = 293
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 27/121 (22%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DRI +
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 I 125
I
Sbjct: 111 I 111
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V G+ VC ECGL++E +ID EWR F N S + RVG PT
Sbjct: 29 CEECESGT-LVKSQDQGELVCDECGLIVEGSNIDRGPEWRAF-NHSERQNKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTSIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ + R +R
Sbjct: 147 MASSLAIPRSVR 158
>gi|255730671|ref|XP_002550260.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240132217|gb|EER31775.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 344
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I+ P+ ++ +GR NR + D L A+ I+ M
Sbjct: 83 NPLLDTEDLSTMISYVPD-------NTKVGRELNRAQSKSLVDKKDNALAAAYVKISQMC 135
Query: 117 D 117
D
Sbjct: 136 D 136
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + S+GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFSSGDLVCGTCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLAD-GGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQM 122
+PL+ L T I+ +G SG ++ S +R L+ AF+ IA D+
Sbjct: 89 DPLMEGMEQLDTTISFRDGGSGIARELQRAASRSAASRSERNLLQAFRDIAGWCDQFSLP 148
Query: 123 RYI 125
+ I
Sbjct: 149 KTI 151
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ +V D G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 15 VCPECESDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQQKSRVGAPTT 72
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 73 QTMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 132
Query: 114 TMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 133 RMASALGVPRSVR 145
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECGS-SNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTKDAGERNLQFALS 139
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G R +R
Sbjct: 140 EIDRMASALGVPRSVR 155
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECDSDN-LVKDSDRGELICEDCGLVVEEEKIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|344304701|gb|EGW34933.1| hypothetical protein SPAPADRAFT_58062 [Spathaspora passalidarum
NRRL Y-27907]
Length = 347
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATM 115
NPLL LST+I+ N +G L+ + +N D L A++ I+ M
Sbjct: 85 NPLLDTEDLSTMISYVPENSRAGRELNRA--HQKNTVDKKDNALAAAYQKISQM 136
>gi|344303899|gb|EGW34148.1| hypothetical protein SPAPADRAFT_59562 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DC++ ++V S GD +C CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 20 VCPDCRQFPPDLVERFSEGDIICGNCGLVLSDRIVDTRSEWRTFNNDDQNGDDPSRVGDS 79
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNR 97
NPLL LST+I+ P G G + L R Q +
Sbjct: 80 GNPLLDTEDLSTMISYVPQG--GNRVGRDLTRIQQK 113
>gi|367012261|ref|XP_003680631.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
gi|359748290|emb|CCE91420.1| hypothetical protein TDEL_0C05310 [Torulaspora delbrueckii]
Length = 356
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + V + S GD VC+ CGLVL +D SEWRTF+N+ + +DP RVG +
Sbjct: 26 CPECKVYPPKVAERFSEGDIVCALCGLVLSDKLVDTRSEWRTFSNDDQNGDDPSRVGEAS 85
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSS-SLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST I + G G+ ++ L R Q + D L F I + D
Sbjct: 86 NPLLDGNSLSTRIGQ--GEGGDLRATRDLNRAQGKNVMDKKDNELQGVFAKITMLCD 140
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIXK 141
Query: 115 MSDRIGQMRYIRRWK 129
S QM +R+W+
Sbjct: 142 RS----QMHRLRKWQ 152
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V HS G+ +C +CGLVL+ +ID EWR F N S RVG PT
Sbjct: 48 CPECNSENLV---HSEGEVICDDCGLVLDEQNIDRGPEWRAF-NHSERQSKSRVGAPTTK 103
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I N A G LSS L +WQ R D R L A +
Sbjct: 104 TMHDKGLTTTIDWQNKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEMDR 163
Query: 115 MSDRIG 120
M+ +G
Sbjct: 164 MASALG 169
>gi|358336173|dbj|GAA33522.2| transcription initiation factor TFIIB [Clonorchis sinensis]
Length = 284
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VCS CGLV+ ID SEWRTF+N++ D RVG NPLL+ LST+I+ P+ +
Sbjct: 2 VCSMCGLVVADRVIDVGSEWRTFSNDANAKDMCRVGSSENPLLSGSDLSTMISGPSFSDS 61
Query: 85 EFL---SSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
+ +L + + S+ DR L AF+ I M++ +
Sbjct: 62 RQVDDQGKALYKSRRHLSSADRVLTGAFREIGQMAEHL 99
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K T +V DH +G+T CS+CG VL + + EWR+F +E GD R G PT+
Sbjct: 14 CPRCVKGT-LVTDHESGETFCSKCGFVLSDKAQETGPEWRSFTQDEHGDR--ARAGAPTS 70
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG+ LSSS L W +R P DR AF +
Sbjct: 71 LTMHDMGLATIINPTNKDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 130
Query: 114 TMSDRIG 120
+ D++
Sbjct: 131 RLKDKLA 137
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C E+V S G+ +C ECGLV+E +D EWR F N + RVG PT
Sbjct: 26 CPGCDSD-EIVHRSSRGERICEECGLVIEEELVDSGPEWRAF-NHQERQEKSRVGAPTTT 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TLHDKGLTTEIDWKNKDAYGRAISSDKRSQMHRLRKWQKRIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRDVR 155
>gi|354544056|emb|CCE40778.1| hypothetical protein CPAR2_108140 [Candida parapsilosis]
Length = 353
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 31 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 90
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 91 NPLLDTEDLSTMISYVPDNFKAGR----ELNRAQSKSLVDKKDNALAAAYAKISQMCD 144
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 168 MASALGLPENVR 179
>gi|389625125|ref|XP_003710216.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351649745|gb|EHA57604.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440464829|gb|ELQ34194.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490541|gb|ELQ70086.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 371
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+DC T + + S+GD VC+ECGLV+ + +D SEWRTFAN+ +DP RVG N
Sbjct: 24 CNDCGVPTLLQEEVSSGDIVCTECGLVVGARIVDMGSEWRTFANDEAGDDPSRVGDAGNE 83
Query: 66 LLADGGLSTVI--AKPNGASGEFLSS 89
+ L T + + GAS + + S
Sbjct: 84 IYGPSALETKVDMRRDQGASYKIMKS 109
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T + CS+C + VV G+ +C ECGLV+E +D EWR F N + RVG
Sbjct: 22 TISTCSECG-SSNVVRHSDQGERICEECGLVIEEAMVDSGPEWRAF-NHKERQEKSRVGA 79
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFK 110
PT + D GL+T I K A G +SS L +WQ+R D R L A
Sbjct: 80 PTTQTMHDKGLTTQIDWKDKDAYGRSISSKKRSQMNRLRKWQSRIRTRDAGERNLQFALS 139
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G R +R
Sbjct: 140 EIDRMASALGVPRSVR 155
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS+C ++VV S G+ +C CGLV+E ID EWR F ++ N RVG PT
Sbjct: 36 CSECG-SSDVVQHPSPGERICENCGLVIEEGMIDSGPEWRAFNHQERQNKS-RVGAPTTQ 93
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 94 TIHDKGLTTQIDWKNKDAYGRSISSKKRSQMNRLRKWQTRIRTKDAGERNLQFALSEIER 153
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 154 MASALGVPKAVR 165
>gi|429191039|ref|YP_007176717.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448327395|ref|ZP_21516723.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
gi|429135257|gb|AFZ72268.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445608493|gb|ELY62332.1| Transcription factor TFIIB cyclin-related protein [Natronobacterium
gregoryi SP2]
Length = 326
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DVTCPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 145 IDRMASALGLPNNVR 159
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC ECGLV+E + ID EWR F N S + RVG PT
Sbjct: 49 CPECGSEA-LVSDSEHGETVCDECGLVVEENEIDRGPEWRAF-NSSEKDQKSRVGAPTTN 106
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 166
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 167 MASALGLPENVR 178
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V G+ VC +CGL+++ +ID EWR F N S + RVG PT
Sbjct: 20 CPECESSA-LVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAF-NHSERQEKSRVGAPTTQ 77
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 78 TMHDKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 138 MASALGVPRSVR 149
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T+++ D G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 50 CPECES-TQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LSS+ L W R D R L A +
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDR 167
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 168 MASALGLPENVR 179
>gi|406607062|emb|CCH41577.1| Transcription initiation factor IIB [Wickerhamomyces ciferrii]
Length = 339
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK E+ + GD VC+ CGLVL + +D SEWRTF+N ++GD DP RVG
Sbjct: 19 CPECKVFPPELAERFAEGDVVCALCGLVLSNKIVDTRSEWRTFSNDDQNGD-DPSRVGEA 77
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I G S GR N+ + D L A+ I+ M
Sbjct: 78 GNPLLDGNQLSTMIGYGQG------DSRAGRDLNKAQSKSIVDKKDNALQSAYAKISMMC 131
Query: 117 D 117
D
Sbjct: 132 D 132
>gi|238879169|gb|EEQ42807.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 344
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 83 NPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCD 136
>gi|118780388|ref|XP_310127.3| AGAP009559-PA [Anopheles gambiae str. PEST]
gi|116131050|gb|EAA05855.3| AGAP009559-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 9 CKKH--TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V D+ GD +CS+CGL++ ID +SEWRTF+++ DP RVG T+P+
Sbjct: 18 CPYHPAAALVDDYHTGDMICSDCGLIVGDRMIDPSSEWRTFSDDPSRPDPSRVGS-TDPV 76
Query: 67 LADGGLSTVI-AKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
L + LST I NG S L + R L+ F IATM++RI
Sbjct: 77 LQN--LSTFIQPSANGFEPPNHFSFL-----KMDTTTRKLMFGFAMIATMAERIN 124
>gi|68468997|ref|XP_721557.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|68469546|ref|XP_721286.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443195|gb|EAL02479.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46443477|gb|EAL02759.1| likely transcription factor TFIIB [Candida albicans SC5314]
Length = 344
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK ++V S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 23 CPECKIFPPDLVERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 82
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ P+ L R Q++ D L A+ I+ M D
Sbjct: 83 NPLLDTEDLSTMISYAPDSTKA---GRELSRAQSKSLVDKKDNALAAAYIKISQMCD 136
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +H G+TVC+ECGLV+E ID EWR F N S ++ RVG PT
Sbjct: 33 CPECGGRLDADTEH--GETVCAECGLVVEEDEIDRGPEWRAF-NPSEKDEKSRVGAPTTN 89
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 90 MMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 149
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 150 MASALGLPKTVR 161
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C+ H D +G+ C CGLV E + ID EWR F +E D + RVG P
Sbjct: 24 DNICPECQGHITRTSD--SGEATCESCGLVFEDNPIDHGPEWRAFTSEERD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T L+ D GLST I + A G+ +S L W R D R L A
Sbjct: 81 TTQLMHDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDERFRTKDAHERNLKQALGE 140
Query: 112 IATMSDRIGQMRYIR 126
I+ M+ +G +R
Sbjct: 141 ISRMASALGLPESVR 155
>gi|448611149|ref|ZP_21661783.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445743581|gb|ELZ95062.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 288
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + L R NR S +R + AF I ++ +G
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|330040447|ref|XP_003239917.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206843|gb|AEA39019.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 341
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CS C+ ++ D G+ +C +CGLV SH+ID +EWRTF+++ DP R+G ++P
Sbjct: 24 CSACQSEN-IIEDKKQGELICKDCGLVFASHTIDFNNEWRTFSSDQFKKDPSRIGSHSHP 82
Query: 66 LLADGGLSTVIAKPNGASG-EFLSSSLGRWQNR 97
L+ + ST I+K G G FL+ L + NR
Sbjct: 83 LI-ELNRSTGISK--GLKGFNFLNERLIKSHNR 112
>gi|260941562|ref|XP_002614947.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851370|gb|EEQ40834.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 349
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 19/161 (11%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRI 119
NPLL LST+I+ N +G L R Q++ D L A+ I+ M D
Sbjct: 85 NPLLDTEDLSTMISYVPENVKAGR----ELNRAQSKSLVDKKDNALSAAYAKISQMCD-- 138
Query: 120 GQMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALL 160
+++ +V+ K Y L+ L+ K+ +++
Sbjct: 139 -------GYQLPKIVQDGAKEVYKLVHDERLLRGKSQESIM 172
>gi|116195684|ref|XP_001223654.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
gi|88180353|gb|EAQ87821.1| hypothetical protein CHGG_04440 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 12/120 (10%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGP 62
C +CK+ +V ++S+GD VC CGLVL+ ID SEWRTF+ +++G++DP RVG
Sbjct: 26 ICPECKEDPPRLVEEYSSGDMVCETCGLVLD-RIIDTRSEWRTFSGDDNGNDDPSRVGDA 84
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRG---LILAFKTIATMSDRI 119
N ++ L T IA + +L QN+ N D+G L+ A++ I ++D I
Sbjct: 85 PNLMIDGDQLQTAIAFDGKG-----AKNLAHLQNK-INQDKGTKVLLQAYRDIQALTDSI 138
>gi|150866589|ref|XP_001386238.2| hypothetical protein PICST_85155 [Scheffersomyces stipitis CBS
6054]
gi|149387845|gb|ABN68209.2| general RNA polymerase II transcription factor, TFIIB subunit
[Scheffersomyces stipitis CBS 6054]
Length = 350
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 18/122 (14%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK +++ S GD VC CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 29 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGD-DPSRVGDA 87
Query: 63 TNPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATM 115
NPLL LST+I+ P ++ +GR NR + D L A+ I+ M
Sbjct: 88 GNPLLDTEDLSTMISYVPE-------NTRVGRELNRAQSKSLVDKKDNALAAAYAKISQM 140
Query: 116 SD 117
D
Sbjct: 141 CD 142
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECDSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 11 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 64
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + L R NR S +R + AF I ++ +G
Sbjct: 65 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 124
Query: 121 QMRYIR 126
+IR
Sbjct: 125 LPNHIR 130
>gi|356513820|ref|XP_003525607.1| PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor
IIB-2-like [Glycine max]
Length = 347
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 34/159 (21%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI-DETSEWRTF-------------- 47
+ +CSDCK +T +V+DH+AGDT+CSECGLVLES SI +E + R +
Sbjct: 5 EEYCSDCKSYTPLVYDHNAGDTICSECGLVLESRSIEEEIPKLRLYGDKHEDDDDGGGDH 64
Query: 48 -ANESGDNDPVRVGGPTNPLL--ADGGLSTVIAKPNGASGEFLSSSLGRWQNRG---SNP 101
+ V P N LL + GLST++ P+ R RG SN
Sbjct: 65 EDEDEHQEQGFSVSDPFNTLLLTSGAGLSTLVTHPSLYDNNNSDMVKTRKNQRGIKNSNR 124
Query: 102 DR--------GLILAFKTIATMSDRIGQMRYIRRWKIKS 132
D L+ A T+ M++ +G W IK+
Sbjct: 125 DAKRKLKTDCDLVAALLTMEQMANNLGLA-----WSIKN 158
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGAEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + L R NR S +R + AF I ++ +G
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRKFARLRRQHNRARISSKRERNQVYAFTEIRRVTGALG 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV+E +ID EWR F N S RVG PT
Sbjct: 27 CDECSDGT-LVTSEDQGELVCDQCGLVVEGSNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +S+ L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSISADKRSQMRRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASSLGIPRSVR 156
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + + + +C ECGLV+E +ID EWR F N + + RVG PT
Sbjct: 32 CPECDSGA-LVASNDSNEIICEECGLVIEEQNIDHGPEWRAF-NHAERQNKSRVGAPTTQ 89
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 90 TMHDKGLTTQIDWKNKDAHGRSISSKKRNQLNRLRKWQERIRTKDAGERNLQFALSEIDR 149
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 150 MASALGVPRSVR 161
>gi|149244370|ref|XP_001526728.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449122|gb|EDK43378.1| transcription initiation factor IIB [Lodderomyces elongisporus NRRL
YB-4239]
Length = 349
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 27 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRMVDTRSEWRTFSNDDQNGDDPSRVGDAG 86
Query: 64 NPLLADGGLSTVIA--KPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
NPLL LST+I+ N +G L+ R Q + D L A+ I+ M D
Sbjct: 87 NPLLDTEDLSTMISYVPDNTKAGRELT----RAQQKSLVDKKDNALAAAYVKISQMCD 140
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|50422739|ref|XP_459946.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
gi|49655614|emb|CAG88192.1| DEHA2E14762p [Debaryomyces hansenii CBS767]
Length = 346
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK +++ S GD VC CGLVL +D SEWRTF+N+ + +DP RVG
Sbjct: 25 CPECKIFPPDLIERFSEGDIVCGSCGLVLSDRVVDTRSEWRTFSNDDQNGDDPSRVGDAG 84
Query: 64 NPLLADGGLSTVIAK-PNGASGEFLSSSLGRWQNRGSN------PDRGLILAFKTIATMS 116
NPLL LST+I+ P ++ +GR NR + D L A+ ++ M
Sbjct: 85 NPLLDTEDLSTMISYVPE-------NTKVGRELNRAQSKSLVDKKDNALAAAYSKLSQMC 137
Query: 117 D 117
D
Sbjct: 138 D 138
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + V+ D G+TVC+ECGLV+E S+D EWR F ++ D RVG PT
Sbjct: 31 VCPECGGN--VISDEGRGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKS-RVGAPTT 87
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G L S L W R D R L A I
Sbjct: 88 KMMHDKGLSTNIGWQDKDAYGNTLGSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 147
Query: 114 TMSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 RMASALGLPKNVR 160
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECGSDS-LVKDADRGELICEDCGLVVEEGNIDPGPEWRAF-NHQERQEKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+ +C +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECESDN-LVKDSDRGELICEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDDYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V + + + +C +CGL++E +ID EWR F N S RVG PT
Sbjct: 28 CPECD-SADLVTSNDSNEIICEDCGLIIEERNIDHGPEWRAF-NHSERQSKSRVGAPTTQ 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 86 TMHDKGLTTQIDWKDKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 146 MASALGVPRSVR 157
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 149 MASALGLPKEVR 160
>gi|448299195|ref|ZP_21489208.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
gi|445588729|gb|ELY42971.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
tibetense GA33]
Length = 326
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C H +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QNDLACPECTGH--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRIG 120
I M+ +G
Sbjct: 143 GEIDRMASALG 153
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE+V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECD-STEIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVADSEHGETVCEDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D + +T C +CG VLES ID EWR F + ND RVG P
Sbjct: 35 CPECSGR--IVHDEAQAETHCQDCGRVLESDQIDRGPEWRAF-DSREKNDKSRVGAPQTQ 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
L D GLSTVI + A G LSS L +W R +N +R L A I
Sbjct: 92 QLHDRGLSTVIDWRDEDAYGRSLSSLQRKKMRRLRKWDERFRTKNNRERNLKQALGEINR 151
Query: 115 MSDRIG 120
M+ +G
Sbjct: 152 MASALG 157
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + D S G+ +C +CGLV+E +ID EWR F N S RVG PT
Sbjct: 25 CPECDS-TAISTDGS-GELICEDCGLVIEDENIDRGPEWRAF-NHSERQSKSRVGAPTTQ 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGLVLE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLVLEEEGIDRGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRTQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|407462988|ref|YP_006774305.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046610|gb|AFS81363.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 290
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ EWR+FA E G DP R G PT+ + D GLST
Sbjct: 1 MISDNETGERFCDKCGFVIRETLQSSGPEWRSFAKEGG-TDPTRTGAPTSLTMHDRGLST 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRI 119
VI++ N A+G+ LS+S L W +R S+ D+ L A ++ + D++
Sbjct: 60 VISQSNRDATGKPLSTSMKSTIERLRTWDSRSKVTSSADKNLRQALGQLSVLKDKL 115
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+++ C +C + +V G+ VC +CGL++E+ +ID EWR F N + RVG
Sbjct: 22 VSEQTCDECGSSS-LVTSEDQGELVCEDCGLIIETTNIDRGPEWRAF-NHAERKSKSRVG 79
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 80 APTTQTMHDKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFAL 139
Query: 110 KTIATMSDRIGQMRYIR 126
I M+ +G R +R
Sbjct: 140 SEIDRMASALGIPRSVR 156
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V AG+TVC +CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----EAGETVCGDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + L R NR S +R + AF I ++ +
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|448320031|ref|ZP_21509519.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445606437|gb|ELY60341.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 326
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + S N+ RVG P
Sbjct: 28 DVVCPECTGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DASEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIG 120
I M+ +G
Sbjct: 145 IDRMASALG 153
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D G+TVC ECGLV+E ++D EWR F + D+ RVG PT
Sbjct: 35 CPECGS-TNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAFDSSERDSKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 93 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRIG 120
M+ +G
Sbjct: 153 MASALG 158
>gi|435846022|ref|YP_007308272.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672290|gb|AGB36482.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 326
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDVVCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRIG 120
I M+ +G
Sbjct: 144 EIDRMASALG 153
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C + +H G+TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 31 ATCPECDARLQADTEH--GETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPT 87
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTI 112
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 TNMMHDKGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEI 147
Query: 113 ATMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 ERMASALGLPENVR 161
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 168 MASALGLPESVR 179
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 149 MASALGVPRSVR 160
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D + G+TVCS+CGLV++ +SID EWR F + D RVG PT
Sbjct: 51 CPECSGN--LIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQ-KSRVGAPTTK 107
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 108 LMHDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 167
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 168 MASALGLPESVR 179
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 4 AFCSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
A C +C ++ V HS G+ +C +CGLVLE ID EWR F ++ RVG P
Sbjct: 24 ATCPEC--DSDNVVQHSDPGERICKDCGLVLEESMIDSGPEWRAFDHQERQQKS-RVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 81 TTQTMHDKGLTTQIDWKNEDAYGRSISSEKRSQMNRLRKWQTRIRTKDAGERNLQFALSE 140
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G R +R
Sbjct: 141 IDRMASALGVPRAVR 155
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEETVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 141 MASALGVPRSVR 152
>gi|448488467|ref|ZP_21607303.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445696157|gb|ELZ48250.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 324
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|448435246|ref|ZP_21586723.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445684070|gb|ELZ36456.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 324
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ VC +CGLV+E +ID EWR F N + RVG PT
Sbjct: 31 CPECDSEN-LVKSADRGELVCDDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 89 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 148
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 149 MASALGVPRSVR 160
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E + ID EWR F N S + RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEENEIDHGPEWRAF-NSSEKDQKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D+ C C K++ ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G P
Sbjct: 13 DSTCGRCGKNS-MLTDNVTGERFCGKCGYVITETLQDSGPEWRSFSKEGG-ADPTRTGAP 70
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
T+ + D GL+T+I+ N +SG+ L+S+ L W +R ++ D+ L A
Sbjct: 71 TSLAMHDRGLATIISPMNKDSSGKPLTSTMKSTIERLRTWDSRSKVNASSDKNLRQALSE 130
Query: 112 IATMSDRI 119
++T+ D++
Sbjct: 131 LSTLKDKL 138
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C ECGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|448428447|ref|ZP_21584259.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448450283|ref|ZP_21592182.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448481624|ref|ZP_21604975.1| transcription factor TFIIB cyclin-related protein [Halorubrum
arcis JCM 13916]
gi|448507517|ref|ZP_21615028.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448523267|ref|ZP_21618620.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|448530980|ref|ZP_21620814.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|155212686|gb|ABT17407.1| transcription initiation factor TFB [Halorubrum sp. TP009]
gi|445676412|gb|ELZ28934.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445698472|gb|ELZ50516.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445701666|gb|ELZ53642.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445707420|gb|ELZ59274.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445812135|gb|EMA62131.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445821877|gb|EMA71661.1| transcription factor TFIIB cyclin-related protein [Halorubrum
arcis JCM 13916]
Length = 324
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M + C+ C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G
Sbjct: 7 MDNPTCARCGKNS-LLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTG 64
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
P++ ++ D GLSTVI N ASG+ LS+S L W +R + DR L A
Sbjct: 65 APSSLMIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQAL 124
Query: 110 KTIATMSDRI 119
+ + D++
Sbjct: 125 SDLNKLKDKV 134
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 36 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 93
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 94 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 153
Query: 115 MSDRIG 120
M+ +G
Sbjct: 154 MASALG 159
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|448503531|ref|ZP_21613160.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445691732|gb|ELZ43915.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 324
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V+ D G+TVCS+CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGH--VINDEEHGETVCSDCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDSEHGETVCEDCGLVVEEDEIDHGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|55378612|ref|YP_136462.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637427|ref|ZP_21675665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448652038|ref|ZP_21681051.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448681127|ref|ZP_21691273.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448684938|ref|ZP_21693025.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55231337|gb|AAV46756.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764274|gb|EMA15429.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445768185|gb|EMA19272.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445769441|gb|EMA20515.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782869|gb|EMA33710.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 321
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECSGS--LVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 143 MASALGLPENVR 154
>gi|448639408|ref|ZP_21676734.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445762687|gb|EMA13905.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
Length = 322
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECE-STALVRSSDGSEVSCEDCGLILEEEGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRSQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N + RVG PT
Sbjct: 27 CPECDSEN-LVKSADRGELICEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 85 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 9 CKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLA 68
C K ++V D +G+ VCS+CGLV + +EWR F +ES N RVG P++
Sbjct: 2 CGKDQQLVTDLESGEIVCSKCGLVSSDRVQESRAEWRIFNSES--NGRSRVGSPSSLAYH 59
Query: 69 DGGLSTVIAKPN-GASGEFLSSSLG-------RWQNRG---SNPDRGLILAFKTIATMSD 117
D GL+TVI K N +SG L S+ W R S R L+ AF + + D
Sbjct: 60 DMGLATVIGKENRDSSGHQLEPSMNASIQRLRTWDFRSQAHSPTKRNLMHAFSELGRLKD 119
Query: 118 RIG 120
++G
Sbjct: 120 KLG 122
>gi|344212646|ref|YP_004796966.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448631082|ref|ZP_21673537.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448671125|ref|ZP_21687117.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343784001|gb|AEM57978.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445755456|gb|EMA06846.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445766207|gb|EMA17341.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 321
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+ES ID EWR F + S ++ RVG PT
Sbjct: 26 CPECS--GSLVIDDEHGETVCEDCGLVVESDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 143 MASALGLPENVR 154
>gi|55377937|ref|YP_135787.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448658471|ref|ZP_21682871.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55230662|gb|AAV46081.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445761196|gb|EMA12445.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 322
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+E ID EWR F N + + RVG PT
Sbjct: 29 CPECSGN--VVTDTEHGETVCEDCGLVVEEDEIDRGPEWRAF-NSAEKDRKSRVGAPTTN 85
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQNKDAYGRSLSSEQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 146 MASALGLPQNVR 157
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 22 CPECGSES-LVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAF-NSSEKDEKSRVGAPTTN 79
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 139
Query: 115 MSDRIG 120
M+ +G
Sbjct: 140 MASALG 145
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVCSECGLV+E ID EWR F + D RVG PT
Sbjct: 30 VCPEC--GGDLVTDSERGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 RMASALGLPENVR 159
>gi|448363683|ref|ZP_21552280.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445645786|gb|ELY98783.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 326
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRIG 120
I M+ +G
Sbjct: 144 EIDRMASAVG 153
>gi|448298042|ref|ZP_21488075.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445592249|gb|ELY46438.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 296
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGANIDRGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 119 RMASSLGIPRSVR 131
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H V +G+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGHLGV----ESGETVCNDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + L R NR S +R + AF I ++ +
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARLRRQHNRARISSKRERNQVYAFTEIRRLTSALS 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + VV D G+TVC +CGLV+ S+D EWR F ++ D RVG PT
Sbjct: 57 CPECAGN--VVVDDEHGETVCDDCGLVITEDSVDRGPEWRAFDSQEKDQKS-RVGAPTTN 113
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS+ L +W R D R L A I
Sbjct: 114 TMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 173
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 174 MASALGLPENVR 185
>gi|448728406|ref|ZP_21710734.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
gi|445796888|gb|EMA47373.1| Transcription factor TFIIB cyclin-related protein [Halococcus
saccharolyticus DSM 5350]
Length = 335
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVCS+CGLV++ + ID EWR F+++ D R G
Sbjct: 29 TERVCPECDGR--LVDDDEHGETVCSDCGLVVDENEIDHGPEWRAFSSQERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R D R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 145
Query: 111 TIATMSDRIGQMRYIR 126
I M +G + +R
Sbjct: 146 EIERMGSALGVPKDVR 161
>gi|241958734|ref|XP_002422086.1| general transcription facto TFIIB, putative; transcription
initiation factor IIB, putative [Candida dubliniensis
CD36]
gi|223645431|emb|CAX40087.1| general transcription facto TFIIB, putative [Candida dubliniensis
CD36]
Length = 346
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ ++V S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLVERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIA 77
+N L + L+T+I+
Sbjct: 81 SNSLYDNEDLTTMIS 95
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPNIVEEFGSGDLVCGSCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
+ L L T I+ +G SG +++ S +R L+ AF+ I + D+ +
Sbjct: 89 D-LEGIEQLDTAISFRDGGSGIARELQRAASRSQSSRSERNLLAAFRDIGSWCDQFSLPK 147
Query: 124 YI 125
I
Sbjct: 148 TI 149
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ D G+TVCSECGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LITDTEHGETVCSECGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS 89
++ D GLST I + A G+ LSS
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSS 120
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 27 CDECGGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTSIDWKNQDAYGRSLSSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASSLGIPRSVR 156
>gi|336255382|ref|YP_004598489.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335339371|gb|AEH38610.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 329
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 30 NDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 86
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 87 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 146
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 147 EIDRMASALGLPNNVR 162
>gi|448366242|ref|ZP_21554496.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445654851|gb|ELZ07702.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 326
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 27 SDLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGA 83
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 84 PTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 143
Query: 111 TIATMSDRIG 120
I M+ +G
Sbjct: 144 EIDRMASALG 153
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +V D+ + VCS+CGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSHA-LVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLSRNVR 170
>gi|76801753|ref|YP_326761.1| transcription initiation factor TFB 2 [Natronomonas pharaonis DSM
2160]
gi|76557618|emb|CAI49201.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +H G+TVC++CGLV+E ID EWR F + D + RVG P
Sbjct: 24 DLTCPECDGRLQADTEH--GETVCADCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAP 80
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I + A G LSS L W R D R L A
Sbjct: 81 TTKMMHDEGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGE 140
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 141 IERMASALGLPENVR 155
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC++CGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LVTDTEHGETVCNDCGLVVEQDSVDRGPEWRAFDSSERDS-KSRVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTIA 113
++ D GLST I + A G+ LSS R++ R S DR L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-DRNLKQALGEID 154
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 155 RMASALG 161
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECDARLEADSEH--GETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIER 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 17 FDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVI 76
+D+ + D +C+ECG+V++ D SEWRTF+ E+G+ DP ++G N LL L+T+
Sbjct: 25 YDYRSSDQICTECGVVVKDRVDDVGSEWRTFSYEAGNVDPSQIGEEENTLLDGSNLTTIF 84
Query: 77 AKPNGASGEFLSSS---LGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYI 125
G ++ S LGR + R S+ D+ L+ A+ I+ M+ I R +
Sbjct: 85 GPSTSGGGSLINESGEALGRKKKRQTMSSSDQTLVSAYNEISNMAVNINLPRTV 138
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ CS+CGLV+ D +EWR+F+NE G+ R G T+
Sbjct: 12 CPSCGDK-KMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEGNK--ARTGAGTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N A+G+ LS+S L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 3 DAFCSDCKKHTEVVFDHSA--GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ C +C+ + F SA G+ VC +CGL+LE +ID EWR F N + RVG
Sbjct: 38 ERVCPECESAS---FIKSADQGELVCEDCGLILEDDNIDRGPEWRAF-NHAERQSKSRVG 93
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAF 109
PT + D GL+T I N ASG LS+ L +WQ R D R L A
Sbjct: 94 APTTQTMHDKGLTTNIGWQNKDASGRSLSAEKRTRMNRLRKWQERVRTKDAGERNLQFAL 153
Query: 110 KTIATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 154 SETDRMASALGVPRSVR 170
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC ECG+VLE +D EWR+F + RVG PT
Sbjct: 36 CPECGAAG--ITDEKRGETVCQECGVVLEEDVVDRGPEWRSF-DARDKAQKSRVGSPTTE 92
Query: 66 LLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIAT 114
+L D GLS+VI N A+G+ LS S L W R S DR L A I
Sbjct: 93 MLHDKGLSSVIDWQNKDANGQTLSAKKREQMSRLRTWDERFRSQSAQDRNLKQALGEIDR 152
Query: 115 MSDRIG 120
M+ +G
Sbjct: 153 MASALG 158
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S N RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEVSCEDCGLILEEEAIDRGPEWRAF-NHSERNSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRNQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|397775888|ref|YP_006543434.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342843|ref|ZP_21531788.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397684981|gb|AFO59358.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445624676|gb|ELY78052.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIG 120
I M+ +G
Sbjct: 145 IDRMASALG 153
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ VC +CG+V+ES +ID EWR F D + RVG PT
Sbjct: 31 CPECGGT--VTTDDGRGERVCEQCGIVVESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
LL D GLST I ASG LSSS L W R + DR L A I
Sbjct: 88 LLHDEGLSTSIGWADKDASGRTLSSSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 27 VCPECG--GDLVTDSERGETVCAECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 84 NMMHDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 144 RMASALGLPENVR 156
>gi|433592506|ref|YP_007282002.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334943|ref|ZP_21524096.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384407|ref|ZP_21563245.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433307286|gb|AGB33098.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618184|gb|ELY71763.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445658473|gb|ELZ11291.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 326
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIG 120
I M+ +G
Sbjct: 145 IDRMASALG 153
>gi|409731108|ref|ZP_11272645.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722791|ref|ZP_21705320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788613|gb|EMA39320.1| Transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 336
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+TVC+ECGLV++ + ID EWR F + + N+ R G
Sbjct: 30 TEQVCPECGGR--LVSDTEHGETVCNECGLVVDENEIDHGPEWRAF-DAAERNEKKRTGA 86
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT ++ D GLS+ I N A G LSS L W R ++ +R L A
Sbjct: 87 PTTKMMHDKGLSSQIGWQNKDAYGNALSSRKRQQMQRLRTWDERFRTRNSKERNLKQALG 146
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G + +R
Sbjct: 147 EIDRMASALGVPKDVR 162
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 140
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E ID EWR F N + RVG PT
Sbjct: 26 CPECSSDN-LVKSSDRAELVCEDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|448327577|ref|ZP_21516901.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445617824|gb|ELY71416.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 327
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 29 DLVCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 86 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 145
Query: 112 IATMSDRIG 120
I M+ +G
Sbjct: 146 IDRMASALG 154
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ VC +CGLV+E +ID EWR F N + RVG PT + D GL+T I K
Sbjct: 26 GELVCEDCGLVVEEENIDPGPEWRAF-NHAERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 84
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 85 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 140
>gi|298707695|emb|CBJ26012.1| transcription initiation factor IIB [Ectocarpus siliculosus]
Length = 317
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVRVGGP 62
FC +C +++ D AG+ +C C +V+ ID+ +EW+T+A +S G DP R G
Sbjct: 10 FCKECMAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCGDA 69
Query: 63 TNPLL-ADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLIL-AFKTIATMSD 117
+PLL A G++T+I G L++ L + Q + S +R L + F + +
Sbjct: 70 ASPLLSAKSGMNTLI---EGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGN 126
Query: 118 RIG 120
R+G
Sbjct: 127 RLG 129
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K ++V D ++G+ C+ CG V+ D +EWRTF+NE ++ RVG
Sbjct: 9 VTQQKCPSCGKR-KIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNE--ESSRTRVG 65
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLST+I K N ++G+ LS S L W +R S+ DR L A
Sbjct: 66 AGTSLTMHDMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQAL 125
Query: 110 KTIATMSDRIG 120
+ + D++
Sbjct: 126 NEMDKLKDKLA 136
>gi|433592681|ref|YP_007282177.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448335120|ref|ZP_21524272.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307461|gb|AGB33273.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445618056|gb|ELY71640.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 321
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 142 TDRMASSLAIPRSVR 156
>gi|448355065|ref|ZP_21543819.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448360186|ref|ZP_21548828.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445636409|gb|ELY89571.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445640136|gb|ELY93226.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QNDLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRIG 120
I M+ +G
Sbjct: 143 GEIDRMASALG 153
>gi|289582455|ref|YP_003480921.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448282123|ref|ZP_21473413.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532008|gb|ADD06359.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577053|gb|ELY31498.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QNDLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRIG 120
I M+ +G
Sbjct: 143 GEIDRMASALG 153
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSD 117
STVI + A G+ LS L +WQ R + DR L +A + M++
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMAN 131
>gi|448384057|ref|ZP_21563055.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445659046|gb|ELZ11858.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 321
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGSNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTAIDWKNQDAYGRSISSDKRSQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 142 TDRMASSLAIPRSVR 156
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C +C +V D +TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 28 YCPECGGR--LVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTT 84
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 85 NMMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 RMASALGLPENVR 157
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V + VC +CGLV+E +ID EWR F N S RVG P
Sbjct: 27 ERVCPECNSDS-LVRSEDQRELVCDDCGLVVEESNIDRGPEWRAF-NHSERQSKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G LS+ L +WQ R D R L A
Sbjct: 85 TTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALSE 144
Query: 112 IATMSDRIGQMRYIR 126
I MS +G R +R
Sbjct: 145 IDRMSSALGIPRSVR 159
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|448338899|ref|ZP_21527933.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448344427|ref|ZP_21533338.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445621222|gb|ELY74700.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445638546|gb|ELY91674.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG P
Sbjct: 28 DLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAP 84
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G L S L +W R D R L A
Sbjct: 85 TTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGE 144
Query: 112 IATMSDRIG 120
I M+ +G
Sbjct: 145 IDRMASALG 153
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E +H G+TVCS CGLV+E + ID EWR F + D RVG PT
Sbjct: 31 CPECGGRLETDTEH--GETVCSACGLVVEENEIDRGPEWRAFDSAERDQKS-RVGAPTTT 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 MASALGLPKNVR 159
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT
Sbjct: 1 MCPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTT 57
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST+I + A G +S L +W R D R L AF I
Sbjct: 58 QLMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIR 117
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 118 RMASALG 124
>gi|448311268|ref|ZP_21501032.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445605096|gb|ELY59027.1| transcription factor TFIIB cyclin-like protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 329
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 29 QNDLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVG 85
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 86 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 145
Query: 110 KTIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 146 GEIDRMASALGLPTNVR 162
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV+E+ ID EWR F + S ++ RVG PT
Sbjct: 32 CPECSGT--LVVDDEHGETVCEDCGLVVETDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS L +W R D R L A I
Sbjct: 89 MMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 149 MASAVGLPENVR 160
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C E ++D S G+ VC++CG V+E + +DE EWR F + G + RVG P +
Sbjct: 7 CPVCGSE-EFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAF--DPGQREKRARVGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRI 119
LL D GLST I +G L +WQ+R +R L A + ++ +
Sbjct: 64 ILLHDKGLSTDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHL 123
Query: 120 GQMRYI 125
R++
Sbjct: 124 ALPRHV 129
>gi|448308488|ref|ZP_21498365.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593776|gb|ELY47945.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 326
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+D C +C + +V D G+T+C +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QSDLACPECAGN--LVVDDEHGETICEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAF 109
PT + D GLST I + A G L S L +W R D R L A
Sbjct: 83 APTTNTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQAL 142
Query: 110 KTIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 143 GEIDRMASALGLPTNVR 159
>gi|15920551|ref|NP_376220.1| transcription initiation factor IIB [Sulfolobus tokodaii str. 7]
gi|21363017|sp|Q975S1.1|TF2B_SULTO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|15621334|dbj|BAB65329.1| transcription initiation factor IIB 1 [Sulfolobus tokodaii str. 7]
Length = 308
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 132
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 147 MASALGVPRSVR 158
>gi|448732508|ref|ZP_21714784.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445804622|gb|EMA54863.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 342
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + G+ VC +CGL+LE+ +ID EWR F N S RVG PT
Sbjct: 27 CPECESAS-LTNSADQGELVCDDCGLILETDNIDRGPEWRAF-NHSERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRSQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + G DP R G P++
Sbjct: 10 CLRCGKNS-ILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGG-ADPARTGAPSSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
++ D GLSTVI N ASG+ LS+S L W +R + DR L A +
Sbjct: 68 MIHDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNK 127
Query: 115 MSDRI 119
+ D++
Sbjct: 128 LKDKV 132
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSR-TRTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRIGQMRYIR 126
MS +G + +R
Sbjct: 134 MSSNLGLPKDVR 145
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D + G+TVC +CGLV+E+ ++D EWR F N S + RVG PT
Sbjct: 34 VCPECGGS--LITDEARGETVCGDCGLVVETDAVDRGPEWRAF-NSSERDSKSRVGAPTT 90
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G+ LS+ L W R ++ +R L A I
Sbjct: 91 RMMHDKGLSTNIGWQNKDAYGKALSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 150
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 RMASALGLPENVR 163
>gi|383620637|ref|ZP_09947043.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448698233|ref|ZP_21698872.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445780852|gb|EMA31722.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 328
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 149 RMASALGLPNNVR 161
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 6 CSDCKKHTEVVFDHS-AGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
CS+C V HS G+ +C +CGLV+E ID EWR F N RVG PT
Sbjct: 25 CSECGSSN--VLRHSDQGERICEDCGLVVEESMIDSGPEWRAF-NHQERQKKSRVGAPTT 81
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 QTIHDKGLTTQIDWKDKDAYGRSLSSEKRSQMNRLRKWQKRIRTKDAGERNLQFALSEID 141
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 142 RMASALG 148
>gi|448706184|ref|ZP_21700953.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445794734|gb|EMA45273.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 328
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 32 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 88
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 89 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 149 RMASALGLPNNVR 161
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V + C +CGL+LE ID EWR F N+S + RVG PT
Sbjct: 27 CPECD-STALVRSSDGSEVSCEDCGLILEEGGIDHGPEWRAF-NQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSEKRNQMSRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C V+ D G+T+C +CGLVL++ +D +WR + ++ D + R+G PT
Sbjct: 48 VCPECDGL--VIQDDEHGETICEDCGLVLDTDVVDHGPDWRAYDSKERD-EKSRIGAPTT 104
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
L+ D GLST+I + A G +S L +W R D R L AF I
Sbjct: 105 QLMHDKGLSTMIGWRDRDAYGHAISEQKRAQLQRLRQWDERFRTKDAHERNLKQAFGEIR 164
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 165 RMASALG 171
>gi|433421465|ref|ZP_20405775.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432198878|gb|ELK55114.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 294
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>gi|448560614|ref|ZP_21634062.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582685|ref|ZP_21646189.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445722264|gb|ELZ73927.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445732333|gb|ELZ83916.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 288
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + + R NR + +R + AF I ++ +
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|357116819|ref|XP_003560174.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 287
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP--VRVGGP 62
+C C++ T V D ++GDTVC+EC LVL ++E++EWR+F N +D RVG P
Sbjct: 10 YCKGCRRVTTVTVDPASGDTVCTECSLVLNERYVEESTEWRSFLNHGAPSDESRSRVGDP 69
Query: 63 TNPLLADGGLSTVIAKP 79
+ + +A P
Sbjct: 70 ADHFFTNLQFGNAVAGP 86
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVR 58
+C C++ T + D S+GDTVC+EC LVL +DE+ EWRTF N D R
Sbjct: 130 YCKGCRRVTAITVDPSSGDTVCTECSLVLNERYVDESFEWRTFLNHGAPADESR 183
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ VC +CG+VLES +ID EWR F D + RVG PT
Sbjct: 31 CPECGGT--VTTDDGHGERVCEQCGVVLESDAIDHGPEWRAFTPSEKD-ERSRVGSPTTK 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
LL D GLST I ASG LS S L W R + DR L A I
Sbjct: 88 LLHDEGLSTSIGWSDKDASGRTLSPSQREKMSRLRVWDERFRATDSRDRNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|322369726|ref|ZP_08044289.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
gi|320550644|gb|EFW92295.1| transcription initiation factor IIB [Haladaptatus paucihalophilus
DX253]
Length = 352
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRIGQMRYIR 126
M +G +R
Sbjct: 176 MGSALGLPEPVR 187
>gi|448418757|ref|ZP_21579934.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
gi|445676151|gb|ELZ28675.1| transcription initiation factor IIB [Halosarcina pallida JCM 14848]
Length = 352
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +V D G+T C +CGL+ E ++D EWR+F E D + RVG PT
Sbjct: 59 CPECQGR--IVRDDEHGETRCEDCGLICEDRALDHGPEWRSFDTEEQD-EKSRVGAPTTQ 115
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I N ASG + + L W R D R L A I
Sbjct: 116 LMHDKGLSTTIGWQNTDASGRAVPTEKRARLERLRTWDERFRTKDAQERNLKQALGEIQR 175
Query: 115 MSDRIGQMRYIR 126
M +G +R
Sbjct: 176 MGSALGLPEPVR 187
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V G+ +C +CGLV+E +ID EWR F N RVG PT
Sbjct: 29 CPECASDN-LVKSSDRGELICDDCGLVVEEGNIDPGPEWRAF-NHQERQSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 147 MASALGVPRSVR 158
>gi|292654406|ref|YP_003534303.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|433424039|ref|ZP_20406390.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|448293951|ref|ZP_21484053.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448573512|ref|ZP_21640995.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|291370888|gb|ADE03115.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|432198180|gb|ELK54492.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|445569344|gb|ELY23918.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445718418|gb|ELZ70108.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 288
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDR 118
D GLST I + G +F + + R NR + +R + AF I ++
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQF--ARMRRQHNRARISTKRERNQVYAFTEIRRVTSA 121
Query: 119 IGQMRYIR 126
+ +IR
Sbjct: 122 LSLPNHIR 129
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V D G+TVC +CGLV++ ID EWR F + D RVG PT
Sbjct: 37 LCPECSSPT-LVTDDGRGETVCEDCGLVVDEDEIDRGPEWRAFDSAERDQKS-RVGAPTT 94
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS+ L W R D R L A I
Sbjct: 95 NMMHDRGLSTNIGWQNKDAYGNSLSSNQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 154
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 155 RMASALGLPESVR 167
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D + G+TVC++CGLV++ SID EWR F + D RVG PT
Sbjct: 36 CPECSGN--LVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKS-RVGAPTTN 92
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
L+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 93 LMHDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNERFRTRDSKERNLKQALGEIDR 152
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 MASALGLPENVR 164
>gi|68492125|ref|XP_710164.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|46431308|gb|EAK90894.1| likely transcription factor TFIIB [Candida albicans SC5314]
gi|238879990|gb|EEQ43628.1| transcription initiation factor IIB [Candida albicans WO-1]
Length = 346
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
C DCK+ +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG
Sbjct: 21 ICPDCKQFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNTDDPSRVGDA 80
Query: 63 TNPLLADGGLSTVIA 77
+N L L+T+I+
Sbjct: 81 SNSLYDTEDLTTMIS 95
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 29 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIG 120
M+ +G
Sbjct: 146 MASALG 151
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + VV D G+TVC++CGLV+ S+D EWR F D RVG P
Sbjct: 23 DLTCPECGGN--VVVDDEHGETVCADCGLVVTEDSVDRGPEWRAFDAAEKDQKS-RVGAP 79
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GLST I + A G LSS+ L +W R D R L A
Sbjct: 80 TTNTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGE 139
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 140 IDRMASALGLPENVR 154
>gi|357116811|ref|XP_003560170.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
distachyon]
Length = 332
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES----GDNDPVRVG 60
+C C++ T V + ++GDTVC+EC LVL+ +DE+ EWR F N D P +
Sbjct: 11 YCKGCRRVTTVTVNPASGDTVCTECSLVLKERYVDESLEWRNFLNHGPAAPADKSPSHI- 69
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEF-----------LSSSLGRWQNRGSNPDRGLILAF 109
+ L + L T +A P + E + G + P+R L AF
Sbjct: 70 --DDHFLTNLQLGTAVAGPATGNAETDVALPRKRGGGVPKKRGAAAAAAAAPNRTLAEAF 127
Query: 110 KTIATMSDRIG 120
+ + M++R+G
Sbjct: 128 QAMDGMAERLG 138
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C T V++D + G+ VC CG V+ES +ID EWR+F +E D R+G P +
Sbjct: 12 CPSCG-STSVMYDKTTGELVCQNCGYVIESDTIDYGREWRSFEDER-DEGKGRMGSPLSY 69
Query: 66 LLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIATMSD 117
D G STVI K N F L +WQ R S +R L A + S+
Sbjct: 70 AKYDKGTSTVIGKASESIKLSNANRRTFY--KLRKWQPRISTAYERNLKFALTELRHASN 127
Query: 118 RI 119
R+
Sbjct: 128 RL 129
>gi|255721725|ref|XP_002545797.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
gi|240136286|gb|EER35839.1| transcription initiation factor IIB [Candida tropicalis MYA-3404]
Length = 347
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C DCK +++ S GD +C +CGLVL +D SEWRTF N+ + +DP RVG +
Sbjct: 23 CPDCKLFPPDLIERFSEGDIICGQCGLVLSDRIVDTRSEWRTFQNDDKNSDDPSRVGEAS 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNR 97
N L L+T+I+ G ++L + Q +
Sbjct: 83 NSLYDTEDLTTMISYTANPGGSGSKNNLNKIQQK 116
>gi|448543870|ref|ZP_21625331.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448551030|ref|ZP_21629172.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448558595|ref|ZP_21633152.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445706012|gb|ELZ57899.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710586|gb|ELZ62384.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445712347|gb|ELZ64129.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 288
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + + R NR + +R + AF I ++ +
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQFARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 16/125 (12%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+VFD G+ +C+E G VLE +++ EWR F E + R+GGP +P + D GL+T
Sbjct: 26 IVFDPERGEYICTETGEVLEQKLVNQGPEWRAFTPEEKEKRS-RIGGPLSPTVHDRGLTT 84
Query: 75 VIA-KPNGASG---------EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQ 121
+I + ASG EFL +WQ R S+ DR L A + +S+++
Sbjct: 85 LIDWRDRDASGKKLEPKKRLEFLRYR--KWQIRSRIQSSIDRNLAQAMNELDRLSNQLHL 142
Query: 122 MRYIR 126
R +R
Sbjct: 143 NRAVR 147
>gi|448606561|ref|ZP_21658987.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738769|gb|ELZ90281.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 288
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H AG+TVC++CGLV+ + ID EWR+FA++ D +P R G P
Sbjct: 10 CPECDGH----LGFEAGETVCTDCGLVVSEYRIDHGPEWRSFADD--DRNPARTGAPLTR 63
Query: 66 LLADGGLSTVIAKPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G + + R NR + +R + AF I ++ +
Sbjct: 64 SRHDRGLSTEIGRSTRIKGRKRRQLARMRRQHNRARISTKRERNQVYAFTEIRRVTSALS 123
Query: 121 QMRYIR 126
+IR
Sbjct: 124 LPNHIR 129
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + +V D G+TVC++CGLV+E S+D EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LVTDTEHGETVCTDCGLVVEQDSVDRGPEWRAFDSSERDSKS-RVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTIA 113
++ D GLST I + A G+ LSS R++ R S +R L A I
Sbjct: 96 MMHDKGLSTNIGWQDKDAYGKSLSSRQRQRMQRLRTWNERFRTRDSK-ERNLKQALGEID 154
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 155 RMASALG 161
>gi|448347239|ref|ZP_21536116.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445631076|gb|ELY84319.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 296
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 1 MCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 58
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 59 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 118
Query: 114 TMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 119 RMASSLAIPRSVR 131
>gi|448734087|ref|ZP_21716315.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445800941|gb|EMA51287.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 268
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ G+ VC +CGL+LE+ +ID EWR F N + RVG PT
Sbjct: 27 CPECESAS-LIKSADQGELVCEDCGLILENDNIDRGPEWRAF-NHAERQSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I + A G LS+ L +WQ R D R L A
Sbjct: 85 TMHDKGLTTQIGWQDKDAYGRSLSAEKRTQMNRLRKWQERVRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|448396906|ref|ZP_21569354.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673435|gb|ELZ25996.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 326
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECA--GQLVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 147 RMASALG 153
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 152 ELDRMASALGLPRNVR 167
>gi|448319021|ref|ZP_21508530.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445597140|gb|ELY51217.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 326
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 30 VCPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 87 NTMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 147 RMASALG 153
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 30 CPEC--GGQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M+ +G
Sbjct: 147 MASALG 152
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 142 TDRMASSLAIPRSVR 156
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ ++V D + + VC +CGLVL+ +ID EWR F N S RVG P
Sbjct: 25 CPECESK-DIVTD-ADQELVCEDCGLVLDERNIDRGPEWRAF-NHSERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEI-- 139
Query: 115 MSDRIGQMRYIRRWK 129
DR+ +R+W+
Sbjct: 140 --DRMASALRLRKWQ 152
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG P
Sbjct: 24 ERVCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAP 81
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T + D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 82 TTQTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSE 141
Query: 112 IATMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 142 TDRMASSLAIPRSVR 156
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +E + + + VC +CGLVL+ +ID EWR F N + RVG P
Sbjct: 25 CPEC--DSENIVTDADQELVCEDCGLVLDERNIDRGPEWRAF-NHNERQSKSRVGAPITE 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 82 TMHDKGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 142 MASALGVPRSVR 153
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V G+ VC +CGLV++ + +D EWR F + S RVG P
Sbjct: 26 CPECHS-TALVRSTDRGELVCDDCGLVVDDNVVDHGPEWRAF-DHSERQSKSRVGAPVTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K ++G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDSAGHLLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC +CGLV+E +D EWR F N S RVG PT
Sbjct: 26 CPECGSKN-LVNSADQSELVCDDCGLVVEEDHVDRGPEWRAF-NHSERQSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A I
Sbjct: 84 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 144 MASALGVPRSVR 155
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++V D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 26 VCPEC--GGDLVADSERGETVCEDCGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 82
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 83 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 142
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 143 RMASALGLPENVR 155
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ CSECGLV++ ID EWR + N+ RVG PT
Sbjct: 26 CPECDGR--LTHDSEHGERACSECGLVVDEDEIDHGPEWRAHTQKER-NEKSRVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQN--RGSNP-DRGLILAFKTIAT 114
L+ D GLST I+ + A G LSS L W R NP +R L A I
Sbjct: 83 LMHDKGLSTKISWQDKDAYGNTLSSQKRQQMQRLRTWDERFRTRNPKERSLKQALSEIER 142
Query: 115 MSDRIGQMRYIR 126
MS +G + +R
Sbjct: 143 MSSALGLPKSVR 154
>gi|15790009|ref|NP_279833.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235732|ref|YP_001688932.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195245|sp|Q9HR45.1|TF2B4_HALSA RecName: Full=Transcription initiation factor IIB 4; Short=TFIIB 4
gi|10580433|gb|AAG19313.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726798|emb|CAP13584.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 328
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRIG 120
I M+ G
Sbjct: 146 IERMASAFG 154
>gi|448394859|ref|ZP_21568456.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445661995|gb|ELZ14770.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 329
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIG 120
M+ +G
Sbjct: 151 MASALG 156
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ + C +CGL+LE +ID EWR F N S + RVG PT
Sbjct: 27 CPECDSSS-LIRSSDESEISCEDCGLILEEETIDRGPEWRAF-NHSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRTQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|238593378|ref|XP_002393178.1| hypothetical protein MPER_07136 [Moniliophthora perniciosa FA553]
gi|215460272|gb|EEB94108.1| hypothetical protein MPER_07136 [Moniliophthora perniciosa FA553]
Length = 122
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ + +V + +GD VC CGLVL +D SEWRTFAN+ GD DP RVG +
Sbjct: 30 ICPECRDPNPHIVEEFGSGDLVCGNCGLVLGDRIVDTRSEWRTFANDEGD-DPSRVGAAS 88
Query: 64 NPLL 67
+PL+
Sbjct: 89 DPLM 92
>gi|448418737|ref|ZP_21579914.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
gi|445676131|gb|ELZ28655.1| transcription factor TFIIB cyclin-related protein [Halosarcina
pallida JCM 14848]
Length = 335
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+T C ECGLV+ ID EWR F N + D RVGGPT L D GLSTVI
Sbjct: 52 DETHGETTCIECGLVVTEDEIDRGPEWRCF-NAAEKEDRSRVGGPTTKRLHDDGLSTVID 110
Query: 78 KPNG-ASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
N A G LSS L W R + D R L A + M+ +G +R
Sbjct: 111 WQNSDAHGNALSSKKRQQMQRLRTWDERFRSKDAQERNLKHALGEVDRMASALGLPEAVR 170
>gi|389846232|ref|YP_006348471.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616151|ref|ZP_21664861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243538|gb|AFK18484.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750806|gb|EMA02243.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 335
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 157 MASALGLPENVR 168
>gi|301098814|ref|XP_002898499.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
gi|262104924|gb|EEY62976.1| transcription initiation factor IIB, putative [Phytophthora
infestans T30-4]
Length = 308
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC +CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECGSK-DVVTDFSAGDVVCRDCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKP 79
+ L LST + P
Sbjct: 69 ADARLDSLSLSTYLVDP 85
>gi|448330751|ref|ZP_21520030.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445611255|gb|ELY65015.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 321
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T +V G+ VC +CGL++E +ID EWR F N S + RVG PT
Sbjct: 26 VCDECDGGT-LVKSEDQGELVCDQCGLIVEGTNIDHGPEWRAF-NHSERQNKSRVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G +SS L +WQ R D R L A
Sbjct: 84 QTMHDKGLTTSIDWKNQDAYGRSISSDKRNQMRRLRKWQERIRTKDAGERNLQFALSETD 143
Query: 114 TMSDRIGQMRYIR 126
M+ + R +R
Sbjct: 144 RMASSLAIPRSVR 156
>gi|284164125|ref|YP_003402404.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013780|gb|ADB59731.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 329
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG PT
Sbjct: 34 CPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DATEKNEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 91 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPTNVR 162
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSRA-LVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLSRNVR 170
>gi|448561229|ref|ZP_21634581.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|448582139|ref|ZP_21645643.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448625327|ref|ZP_21671094.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445721461|gb|ELZ73129.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445731787|gb|ELZ83370.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445749089|gb|EMA00535.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 335
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 157 MASALGLPENVR 168
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + ++ D G+TVC+ECGLV+E ID EWR F + D RVG PT
Sbjct: 30 CPECGGN--LISDTERGETVCTECGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 87 MMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|448626518|ref|ZP_21671297.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445760130|gb|EMA11394.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 339
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|448613363|ref|ZP_21663243.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740260|gb|ELZ91766.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 335
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 157 MASALGLPENVR 168
>gi|292654958|ref|YP_003534855.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448292824|ref|ZP_21483145.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543167|ref|ZP_21624807.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550042|ref|ZP_21628647.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559604|ref|ZP_21633678.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572225|ref|ZP_21640218.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448596951|ref|ZP_21654089.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371057|gb|ADE03284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445571799|gb|ELY26342.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706914|gb|ELZ58784.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710994|gb|ELZ62789.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445713090|gb|ELZ64871.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445720817|gb|ELZ72488.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740832|gb|ELZ92337.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 335
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 157 MASALGLPENVR 168
>gi|448605946|ref|ZP_21658539.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445741269|gb|ELZ92773.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 335
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 157 MASALGLPENVR 168
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V + C +CGL+LE +ID EWR F ++S + RVG PT
Sbjct: 27 CPECDSSS-LVRSADESEVSCEDCGLILEEETIDRGPEWRAF-DQSERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRN-LVQDYERAELVCSECGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLPRTVR 170
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C C + V +D S G+ VC CG V+E +ID EWR+F +E D R+G P
Sbjct: 9 NAKCPSCGSES-VTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDER-DEGKGRMGSP 66
Query: 63 TNPLLADGGLSTVIAKP-------NGASGEFLSSSLGRWQNRGSNP-DRGLILAFKTIAT 114
+ D G STVI K N F L +WQ R S +R L A +
Sbjct: 67 LSYAKYDKGTSTVIGKASESIKLSNANRRTFY--KLRKWQPRISTAYERNLKFALTELRR 124
Query: 115 MSDRI 119
S+R+
Sbjct: 125 ASNRL 129
>gi|15236883|ref|NP_192806.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|3600041|gb|AAC35529.1| contains similarity to transcription factor TFIIB repeat domains
(Pfam: transcript_fac2.hmm, score: 49.16) [Arabidopsis
thaliana]
gi|4539446|emb|CAB40034.1| putative protein [Arabidopsis thaliana]
gi|7267766|emb|CAB81169.1| putative protein [Arabidopsis thaliana]
gi|39545886|gb|AAR28006.1| TFIIB6 [Arabidopsis thaliana]
gi|332657516|gb|AEE82916.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
Length = 182
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +CK+ TE V ++ GDT+C ECG V+E++ ID+ G
Sbjct: 4 DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 46
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRI 119
TNP L G L T+I K +G S L+S L R QN + + + +A+ I M++ +
Sbjct: 47 TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 105
Query: 120 G 120
G
Sbjct: 106 G 106
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ CS CG V++ +D EWR +E G RVG P
Sbjct: 10 ALCPECGNEM-LVTDQRTGEITCSVCGFVIQEKDVDMGPEWRNLEDEEGSRS--RVGAPL 66
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLS 88
+P+ D GLSTVI + ASG LS
Sbjct: 67 SPMYRDHGLSTVIEGVDEDASGRKLS 92
>gi|448580042|ref|ZP_21644871.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448590025|ref|ZP_21650084.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445722715|gb|ELZ74372.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445735140|gb|ELZ86693.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 334
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC +CGLV+ + S+D EWR F D + RVG PT
Sbjct: 39 CPECGGH--VVTDDEHGETVCDDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 95
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 96 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 155
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 156 MASALGLPENVR 167
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +V D+ G+ VC +CGLV++ ID+ EWR F +E D+ R G P
Sbjct: 16 CPECG-STHLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRS-RTGAPMTY 73
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R ++ +R L A + +
Sbjct: 74 TIHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELER 133
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 134 MASNLGLPKDVR 145
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPEC--NGSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 146 RMASALGLPENVR 158
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIG 120
I + A G LSS+ L +W R D R L A I M+ +G
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALG 147
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 34 EQICPECGGN--LVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 90
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 91 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 150
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 151 IDRMASALGLPENVR 165
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC CG V+E + ID EWR F + S RVG P +
Sbjct: 7 CPVCG-STEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAF-DASQREKRARVGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 121 QMRYI 125
R++
Sbjct: 125 LPRHV 129
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + + D G+TVC ECGLV+E ID EWR F + S ++ RVG PT
Sbjct: 28 VCPECGGN--LASDAEHGETVCEECGLVVEEDEIDPGPEWRAF-DASEKDEKSRVGAPTT 84
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 144
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 RMASALGLPESVR 157
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 20 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKS-RVGAP 77
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 78 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 137
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 138 IDRMASALGLPENVR 152
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + + D G+TVC +CGLV+E ID EWR F D RVG P
Sbjct: 29 ETLCPECGS-SNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQ-KSRVGAP 86
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G LSS+ L W R D R L A
Sbjct: 87 TTNMMHDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGE 146
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 147 IDRMASALGLPENVR 161
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE SID EWR F N + + RVG PT
Sbjct: 27 CPECD-STALARSADESEISCEDCGLILEEESIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASALGVPRSVR 156
>gi|433639269|ref|YP_007285029.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377441|ref|ZP_21560137.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433291073|gb|AGB16896.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655385|gb|ELZ08230.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 326
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G+TVC++CGLV+ S+D EWR F + S N+ RVG PT
Sbjct: 31 CPECS--GQLVADDEHGETVCADCGLVVAEDSVDRGPEWRAF-DASEKNEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 88 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIG 120
M+ +G
Sbjct: 148 MASAVG 153
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N N+ RVG P
Sbjct: 20 LCPDCETET-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHNELSRVGAPLT 77
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRIG 120
M +G
Sbjct: 138 RMVSALG 144
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>gi|448323082|ref|ZP_21512547.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445600711|gb|ELY54717.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 319
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 28/126 (22%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 21 ALCPDCETET-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
+ D GL+T I W+NR +N + +D+ GQ+
Sbjct: 79 TQSMHDRGLTTTID----------------WRNRDANGH----------SMSADKHGQLH 112
Query: 124 YIRRWK 129
+R W+
Sbjct: 113 RLRVWQ 118
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++++D+ G+ C+ CG V+ ID EWR F + S N R G P +
Sbjct: 10 CPYCG-SSKLIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAF-DVSQRNKRSRTGAPESI 67
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
L+ D GLST I SG L +WQ+R G DR L A + ++ ++
Sbjct: 68 LIHDKGLSTNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLK 127
Query: 121 QMRYIR 126
RY++
Sbjct: 128 LPRYVK 133
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 74
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 75 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 130
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T C C K +++ D++ G+ CS CG V+ I+ EWR+F+N+ D RVG
Sbjct: 6 ITKQRCPSCTK-AKMILDNNTGELFCSFCGFVMPEKLIEGGPEWRSFSNDGTDRS--RVG 62
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNRG---SNPDRGLILAF 109
T+ + D GLST+I + N A+G+ L SS+ + W +R S+ +R L A
Sbjct: 63 AGTSITIHDMGLSTIIGQQNKDATGKPLDSSMKKSIERLRTWDSRSQAHSSAERNLRQAL 122
Query: 110 KTIATMSDR-------IGQMRYIRRWKIKSLVEAEIKTHYWLLAC 147
+ M + I + YI R I+ + H + AC
Sbjct: 123 SEMDKMKAKLSLTDPVIEKAAYIYRKAIERKLVKGRSIHGLVAAC 167
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C + D G+TVC+ECGLV+E ID EWR F + D RVG
Sbjct: 39 SELVCPECGGR--LTADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGA 95
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G L S L +W R D R L A
Sbjct: 96 PTTNMMHDKGLSTNIGWQDKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALG 155
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 156 EIDRMASALGLPENVR 171
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCADCGLVVEEDEIDRGPEWRAFDSSERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T++ D G+TVC CGLV++ ++D EWR F ++ D RVG PT
Sbjct: 43 CPECGS-TDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQ-KSRVGAPTTN 100
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS+ L W R D R L A I
Sbjct: 101 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMKRLRTWNERFRTRDSKERNLKQALGEIDR 160
Query: 115 MSDRIG 120
M+ +G
Sbjct: 161 MASALG 166
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 27 VCPECGGG--LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 84 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 144 RMASALGLPENVR 156
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC+ECGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTECGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + VV D G+T+C +CGLV+ S+D EWR F + D RVG PT
Sbjct: 70 VCPECSGN--VVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKS-RVGAPTT 126
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLST I + A G LSS+ L +W R D R L A +
Sbjct: 127 NTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQALGEVD 186
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 187 RMASALGLPENVR 199
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 32 VCPECGGG--LVTDSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKS-RVGAPTT 88
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 89 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 148
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 149 RMASALGLPENVR 161
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGS--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 146 RMASALGLPENVR 158
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + ++ D G+TVC ECGLV+E +D EWR F + S + RVG P
Sbjct: 33 EQVCPECSGN--LIHDDDHGETVCQECGLVVEDTIVDRGPEWRAF-DASERDSKSRVGAP 89
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 149
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 150 IDRMASALGLPENVR 164
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB
1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P +
Sbjct: 7 CPVCG-STEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 64 ILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D +TVC++CGLV+E ID EWR F + D RVG PT
Sbjct: 28 CPECGG--QLVSDEEHAETVCTDCGLVVEEDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|345004538|ref|YP_004807391.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344320164|gb|AEN05018.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 330
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV++ SID EWR F + D + RVG PT
Sbjct: 35 CPECSGSLATDTEH--GETVCQDCGLVVDEDSIDRGPEWRAFDSREKD-EKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+S L W R D R L A I
Sbjct: 92 MMHDKGLSTNIGWQDKDAYGNQLSASQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 152 MASALGLPESVR 163
>gi|55378764|ref|YP_136614.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448637593|ref|ZP_21675831.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651893|ref|ZP_21680906.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|55231489|gb|AAV46908.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445764440|gb|EMA15595.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445769296|gb|EMA20370.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
Length = 339
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + +V D+ G+TVC ECGLV+E +D EWR F D+ RVG P
Sbjct: 33 EQVCPECGGN--LVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKS-RVGAP 89
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLST I N A G+ LS L W R D R L A
Sbjct: 90 TTKMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGE 149
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 150 IDRMASALGLPENVR 164
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +C ++V D+ + VC +CGLV+++ ID EWR F ++ RVG
Sbjct: 37 TESQCPECGSR-QLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 155 ELDRMASALGLPRNVR 170
>gi|82705905|ref|XP_727162.1| transcription initiation factor IIb [Plasmodium yoelii yoelii
17XNL]
gi|23482872|gb|EAA18727.1| transcription initiation factor iib [Plasmodium yoelii yoelii]
Length = 183
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVR 58
+ + FC DCK+ ++ D S G +C+ CGLV+E++ + E EWR F+N +S ND R
Sbjct: 41 IQNNFCPDCKEKGIIICDTSEGTQICNGCGLVIETNILSEEQEWRNFSNDGQSKSNDRNR 100
Query: 59 VGGPTNPLLADGGLSTVIAKP 79
VG ++ L + ST K
Sbjct: 101 VGEASDIWLENNLTSTTFIKS 121
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + +V D+ + VCS+CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LVQDYERAELVCSDCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLPRTVR 170
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 146 RMASALGLPENVR 158
>gi|429190252|ref|YP_007175930.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134470|gb|AFZ71481.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 325
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+TVC +CGLV++ ID EWR F + D + RVG PT
Sbjct: 31 CPECSGR--LVSDDERGETVCEDCGLVVDEGEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
+ VC +CGLV+E ID EWR F N RVG PT + D GL+T I K
Sbjct: 8 AELVCDDCGLVVEEERIDPGPEWRAF-NHQERQQKSRVGAPTTQTMHDKGLTTTIDWKDK 66
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 67 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 122
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPSCTK-AKMVLDENTGELFCSFCGFV-EAEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSAERNLRQALSEMD 133
Query: 114 TMSDR-------IGQMRYIRRWKIKSLVEAEIKTHYWLLAC 147
+ D+ I + YI R I+ + H + AC
Sbjct: 134 KLKDKLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAAC 174
>gi|73920958|sp|Q9UWN6.2|TF2B_SULAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
Length = 307
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNEL----ERIGNL 131
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DCK H + +DH + VC++CGLVLE + +D EWR F + +N R G P +
Sbjct: 16 CPDCKGTHLKRDYDH--AEIVCADCGLVLEDNIVDTGPEWRAF-DMQQENALARAGPPMS 72
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIA 113
L D GLST I+ N G +S+ + +WQ R + +R + +A + +
Sbjct: 73 TTLPDKGLSTEISPTNRDYYGRSISNKNQSMLFRMRKWQRRARASKSAERNMAVAMREMQ 132
Query: 114 TMSDRIGQMRYIR 126
++ + R I+
Sbjct: 133 AVATNLKLPRRIQ 145
>gi|6578937|gb|AAF18139.1|AF205429_1 archaeal transcription factor B [Sulfolobus acidocaldarius]
Length = 309
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNEL----ERIGNL 131
>gi|448709798|ref|ZP_21701276.1| transcription factor TFIIB cyclin-related protein [Halobiforma
nitratireducens JCM 10879]
gi|445792000|gb|EMA42613.1| transcription factor TFIIB cyclin-related protein [Halobiforma
nitratireducens JCM 10879]
Length = 335
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C+ +V D G+TVC CGLV+E + ID EWR F ++G+ D RVG P
Sbjct: 38 CPECRGP--LVTDDERGETVCDGCGLVVEENEIDRGPEWRAF--DAGERDEKSRVGAPAT 93
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSSLGR-------WQNRGSNPD---RGLILAFKTIA 113
L+ D GLST I + A G+ LS R W R D R L A I
Sbjct: 94 KLMHDDGLSTNIGWQDEDAYGKALSGRQRRKMQRLRTWNERFRTRDSKERNLKQALGEIE 153
Query: 114 TMSDRIGQMRYIR 126
M +G +R
Sbjct: 154 RMGSALGLSESVR 166
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 29 VCPECSGA--LLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKD-EKSRVGAPTT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 86 NMMHDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEID 145
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 146 RMASALGLPENVR 158
>gi|448680963|ref|ZP_21691109.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445768021|gb|EMA19108.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 339
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQDKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ G+ C +CG V+ S + EWR F +SG N P R G P++ L+ D GLSTVI
Sbjct: 4 DNVTGEQFCGKCGYVVSEKSNESGPEWRAFQTDSGAN-PARTGAPSSLLIHDMGLSTVIN 62
Query: 78 KPN-GASGEFLSSS-------LGRWQNRGSN---PDRGLILAFKTIATMSDRIG 120
N A+G+ LS+S L W +R DR L A + + D+I
Sbjct: 63 PINKDATGKPLSTSMKSTIERLRTWDSRSQAHEPQDRNLRQALGELTRIKDKIA 116
>gi|433432320|ref|ZP_20407759.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432193595|gb|ELK50308.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 167
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H VV D G+TVC++CGLV+ + S+D EWR F D + RVG PT
Sbjct: 40 CPECGGH--VVTDDEHGETVCNDCGLVVTADSVDRGPEWRAFDAREKD-EKSRVGAPTTN 96
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L + L +W R D R L A I
Sbjct: 97 TMHDKGLSTNIDWRDRDAYGNSLGARQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 156
Query: 115 MSDRIG 120
M+ +G
Sbjct: 157 MASALG 162
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 6 VCPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRI 119
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 64 ILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQL 123
Query: 120 GQMRYI 125
R++
Sbjct: 124 KLPRHV 129
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
+C +C ++ D +TVC++CGLV+E ID EWR F D RVG PT
Sbjct: 27 YCPECGGR--LISDTEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 84 KMMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 143
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 144 RMASALGLPENVR 156
>gi|448684801|ref|ZP_21692888.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445782732|gb|EMA33573.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 339
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC +V D S G+TVC CGLV++ ID EWR F ++ DN RVG PT
Sbjct: 30 CPDCGGS--LVTDDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDN-KRRVGAPTTE 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I N A G LS+ L W R D R L A I
Sbjct: 87 MKHDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M +G
Sbjct: 147 MGSALG 152
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F N S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVEEGEIDHGPEWRAF-NASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LS+ L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 MASALGLPKSVR 159
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T +V D G+ VC ECGLVL ID EWR F + DN RVG P
Sbjct: 23 CPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDN-LSRVGAPLTQ 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 81 SMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 140
Query: 115 MSDRIG 120
M +G
Sbjct: 141 MVSALG 146
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVCS+CGLV+E ID EWR F + D + RVG PT
Sbjct: 31 CPECGGR--LISDDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + +V D G+TVC ECGLV+E +D EWR F + S + RVG PT
Sbjct: 35 VCPECGGN--LVQDDEHGETVCQECGLVVEDTVVDRGPEWRAF-DASERDSKSRVGAPTT 91
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 92 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 151
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 152 RMASALGLPENVR 164
>gi|345006049|ref|YP_004808902.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321675|gb|AEN06529.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 324
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + +TVC++CGLV+E +ID EWR F + D RVG PT ++ D GLST I
Sbjct: 33 DEAQAETVCNDCGLVVEEDAIDRGPEWRAFDSSEKDKKS-RVGAPTTKMMHDDGLSTNIG 91
Query: 78 KPN-GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
N A G LS+S L W R D R L A I M+ +G +R
Sbjct: 92 WQNKDAYGNSLSASQRQKMQRLRTWNERFRTRDHKERNLKQALGEIDRMASALGLPENVR 151
>gi|332796366|ref|YP_004457866.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332694101|gb|AEE93568.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 304
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D + ++VFD G+ +C+E G V+E ID+ EWR F E + RVG
Sbjct: 1 MSDKPQDNICPPDKIVFDADRGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVG 59
Query: 61 GPTNPLLADGGLSTVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAF 109
GP N + D GLST+I K A G L +WQ R S+ DR L A
Sbjct: 60 GPLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAM 119
Query: 110 KTIATMSDRIG 120
+ + + +G
Sbjct: 120 NELERIGNLLG 130
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T + + C +CGL+LE +ID EWR F N + + RVG PT
Sbjct: 27 CPECDSTT-LARSADGSEISCEDCGLILEEEAIDRGPEWRAF-NAAERDSKSRVGAPTTQ 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 85 TMHDKGLTTTIDWKNQDAYGRSLSSEKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 145 MASAMGVPRSVR 156
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G +DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-SDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
+I N +SG+ L+SS L W +R ++ DR L A + + D++
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLA 116
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + S ++ RVG PT
Sbjct: 31 CPECS--GQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIG 120
M+ +G
Sbjct: 148 MASALG 153
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K ++V D + G+ CS CG V E+ I E EWR+F+N+ GD RVG T+
Sbjct: 18 CPACTK-AKMVLDETTGELFCSVCGFV-ETEKITEGGPEWRSFSNDGGDRS--RVGAGTS 73
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNRG---SNPDRGLILAFKTIA 113
+ D GLST+I N A+G+ L SS+ + W +R S+ +R L A +
Sbjct: 74 ITMHDMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSSERNLRQALSEMD 133
Query: 114 TMSDR-------IGQMRYIRRWKIKSLVEAEIKTHYWLLAC 147
+ D+ I + YI R I+ + H + AC
Sbjct: 134 KLKDKLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAAC 174
>gi|70606656|ref|YP_255526.1| transcription initiation factor IIB [Sulfolobus acidocaldarius DSM
639]
gi|449066878|ref|YP_007433960.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449069150|ref|YP_007436231.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
gi|68567304|gb|AAY80233.1| transcription initiation factor B [Sulfolobus acidocaldarius DSM
639]
gi|449035386|gb|AGE70812.1| transcription initiation factor IIB [Sulfolobus acidocaldarius N8]
gi|449037658|gb|AGE73083.1| transcription initiation factor IIB [Sulfolobus acidocaldarius
Ron12/I]
Length = 311
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 21 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 79
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 80 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNEL----ERIGNL 135
>gi|354612022|ref|ZP_09029974.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191600|gb|EHB57106.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 317
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D RVG PT + D GLST
Sbjct: 30 VVQDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKDQKS-RVGAPTTNTMHDKGLST 88
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIG 120
I + A G LSS+ L +W R D R L A I M+ G
Sbjct: 89 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASAQG 145
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C VV D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D + G+TVC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 44 VCPECGGS--LVSDEARGETVCGDCGLVVEEDAVDHGPEWRAFDSSERDSKS-RVGAPTT 100
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N A G LS+ L W R ++ +R L A I
Sbjct: 101 RMMHDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNERFRTRNSKERNLKQALGEID 160
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 161 RMASALGLPENVR 173
>gi|448726066|ref|ZP_21708488.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445796834|gb|EMA47327.1| transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 329
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C E DH G+T C ECG +++ + ID EWR + D RVG PT
Sbjct: 31 VCPECDGRLE--HDHKHGETACVECGFIVDENEIDHGPEWRAHTADERDQRS-RVGSPTT 87
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRG--SNP-DRGLILAFKTIA 113
+L D G+ST I + A G LSS L W R +NP +R L A I
Sbjct: 88 KMLHDEGVSTEIDWRNEDAYGNSLSSRQRQKVNRLRTWHTRSQTTNPQERNLKHALGEIG 147
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 148 RMASALG 154
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D + RVG PT
Sbjct: 31 CPECG--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKD-EKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIG 120
M+ +G
Sbjct: 148 MASALG 153
>gi|374633244|ref|ZP_09705611.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373524728|gb|EHP69605.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 306
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 16 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 74
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
T+I K A G L +WQ R S+ DR L A + + + +G
Sbjct: 75 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLG 132
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+D C +C +++ D G+TVC CGLV+E ID EWR F + D RVG
Sbjct: 24 SDVQCPEC--DGKLISDTERGETVCQGCGLVVEEDEIDPGPEWRAFDAKEKDQKS-RVGA 80
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLST I + A G L S L +W R D R L A
Sbjct: 81 PTTNMMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALG 140
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G +R
Sbjct: 141 EIDRMASALGLPENVR 156
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV+E +D EWR F + S ++ RVG PT
Sbjct: 30 CPECGGR--LITDEEHAETVCTDCGLVVEEDEVDRGPEWRAF-DASEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G+TVC++CGLV+ S+D EWR F N + + RVG PT
Sbjct: 24 CPECNGN--VITDEGHGETVCADCGLVVSEDSVDRGPEWRAF-NANEKDSKSRVGAPTTN 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 81 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRIG 120
M+ +G
Sbjct: 141 MASALG 146
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPENVR 162
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC ECGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPENVR 162
>gi|222479036|ref|YP_002565273.1| transcription factor TFIIB cyclin-related [Halorubrum
lacusprofundi ATCC 49239]
gi|222451938|gb|ACM56203.1| Transcription factor TFIIB cyclin-related [Halorubrum
lacusprofundi ATCC 49239]
Length = 324
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECDGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECG-STKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 133 DSSRLGLPRSVR 144
>gi|448729554|ref|ZP_21711869.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445794856|gb|EMA45394.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 376
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 3 DAFCSDC----------KKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESG 52
+ C+DC + +V D G+TVC++CGLV+E+ ID EWR F +
Sbjct: 47 ETVCTDCGLVVEADEIDRGPEXLVSDTEHGETVCTDCGLVVEADEIDRGPEWRAFDSAER 106
Query: 53 DNDPVRVGGPTNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD-- 102
D RVG PT ++ D GLST I + A G LSS L W R D
Sbjct: 107 DQK-SRVGAPTTNMMHDKGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNERFRTRDSK 165
Query: 103 -RGLILAFKTIATMSDRIG 120
R L A I M+ +G
Sbjct: 166 ERNLKQALGEIDRMASALG 184
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG+ LS+S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPINKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRIG 120
+ + D++
Sbjct: 123 ELNRLKDKLA 132
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D+ RVG PT
Sbjct: 30 CPEC--GGQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIG 120
M+ +G
Sbjct: 147 MASALG 152
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C K ++ D+ G+ C +CG V+ D EWR+F+ E G DP R G
Sbjct: 12 TATTCGRCGKKG-MMTDNVTGERFCGKCGYVITEILSDSGPEWRSFSKEGG-TDPTRTGA 69
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFK 110
PT+ + D GL+T+I N +SG+ L+SS L W +R + DR L A
Sbjct: 70 PTSLTIHDRGLATIINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHESADRNLRQALS 129
Query: 111 TIATMSDRI 119
++ + D++
Sbjct: 130 ELSRLKDKL 138
>gi|146304955|ref|YP_001192271.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145703205|gb|ABP96347.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 305
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D GLS
Sbjct: 15 KIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRGLS 73
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
T+I K A G L +WQ R S+ DR L A + + + +G
Sbjct: 74 TLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLG 131
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IVHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRIG 120
M +G
Sbjct: 140 RMVSALG 146
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ +C CG V+E + +D EWR F + S RVG P +
Sbjct: 7 CPVCG-STEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAF-DASQREKRARVGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 121 QMRYI 125
R++
Sbjct: 125 LPRHV 129
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ +C CG V+E + +D EWR F + S RVG P +
Sbjct: 7 CPVCG-STEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAF-DASQREKRARVGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 65 LLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 124
Query: 121 QMRYI 125
R++
Sbjct: 125 LPRHV 129
>gi|440797904|gb|ELR18978.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 303
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK + E + D + GD +C +CGLV+ +D SEWR FA +SGD DP R
Sbjct: 1 MCPDCKNPNGEFMEDFANGDMICRDCGLVVGDRIVDVRSEWRNFA-DSGD-DPSRASR-V 57
Query: 64 NPLLADGGLSTVIAK-----PNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMS 116
N L GGL+T IAK +G+ + +WQ R S D+ L+ F I ++
Sbjct: 58 NDWLPSGGLATEIAKLPTGPNGQNNGQGGGGKMSQWQRRIQLSQGDQNLLSGFDKITHIA 117
Query: 117 D 117
+
Sbjct: 118 E 118
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE FD + G+ VC CG VLE + IDE EWR F + R G P
Sbjct: 7 CPVCG-STEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAF-DPDQRARRARTGAPMTL 64
Query: 66 LLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N +G + S L WQ R +R L A +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 115 MSDRIGQMRYIRRWK 129
M+ QMR RR K
Sbjct: 125 MA---AQMRLPRRVK 136
>gi|448732733|ref|ZP_21715002.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445804263|gb|EMA54522.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 340
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDTEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I + A G LS S L W R ++ +R L A
Sbjct: 86 PTTKLMHDKGLSSQIGWQDKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALA 145
Query: 111 TIATMSDRIGQMRYIR 126
I M +G + +R
Sbjct: 146 EIERMGSALGVPKDVR 161
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 44 CPECQSE-KLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 101
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 102 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 161
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 162 DSSRLGLPRSVR 173
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 28 CPECGGR--VISDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 30 VCPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTT 86
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 87 NMMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 147 RMASALG 153
>gi|448733793|ref|ZP_21716035.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
gi|445802313|gb|EMA52620.1| Transcription factor TFIIB cyclin-related protein [Halococcus
salifodinae DSM 8989]
Length = 335
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +V D G+T C+ECGLV++ + ID EWR F + D R G
Sbjct: 29 TERVCPECGGR--LVNDAEHGETTCAECGLVVDENEIDHGPEWRAFDSAERDRKK-RTGA 85
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFK 110
PT L+ D GLS+ I N A+G LS+ L W R ++ +R L A
Sbjct: 86 PTTKLMHDEGLSSQIGWQNRDANGNALSARKRQRMQRLRTWDERFRTRNSKERNLKQALG 145
Query: 111 TIATMSDRIGQMRYIR 126
I M +G + +R
Sbjct: 146 EIERMGSALGVPKDVR 161
>gi|322371186|ref|ZP_08045738.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549176|gb|EFW90838.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 357
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V D +TVCS+CGLV+E+ ID EWR F + S + RVG P
Sbjct: 48 DHRCPECGG--SLVTDSEHAETVCSQCGLVVEADGIDHGPEWRAF-DASERDSKSRVGMP 104
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKT 111
T ++ D GLS+ I + A G LSS L W R D R L A
Sbjct: 105 TTKMMHDKGLSSNIGWQDKDAYGRSLSSRQRQKMQRLRTWDERFRTRDSKERNLKQALGE 164
Query: 112 IATMSDRIGQMRYIR 126
I M+ +G + +R
Sbjct: 165 IDRMASALGLPKNVR 179
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VCS+CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSR 98
>gi|448445487|ref|ZP_21590385.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685011|gb|ELZ37373.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIGQMRYIR 126
M +G R ++
Sbjct: 137 DRMVSALGVPRPVK 150
>gi|448468113|ref|ZP_21599744.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445810856|gb|EMA60870.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 324
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 MASALGLPKSVR 159
>gi|433590594|ref|YP_007280090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332002|ref|ZP_21521251.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448384822|ref|ZP_21563557.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305374|gb|AGB31186.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445628140|gb|ELY81450.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445657826|gb|ELZ10650.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 319
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL + ID EWR F N ++ RVG P
Sbjct: 21 GLCPDCETDT-IVHDPDRGERVCEECGLVLNADPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 79 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 138
Query: 113 ATMSDRIG 120
M +G
Sbjct: 139 DRMVSALG 146
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 28/126 (22%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 21 GLCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
+ D GL+T I W+NR +N + +D+ GQ+
Sbjct: 79 TQSMHDRGLTTTID----------------WRNRDANGH----------SMSADKHGQLH 112
Query: 124 YIRRWK 129
+R W+
Sbjct: 113 RLRVWQ 118
>gi|448472540|ref|ZP_21601164.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819844|gb|EMA69678.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 323
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 29 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 85
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 86 TMHDKGLSTNI 96
>gi|448456468|ref|ZP_21595237.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811944|gb|EMA61941.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 324
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + V+ D G++VC++CGLV+E+ S+D EWR F + D + RVG PT
Sbjct: 30 CPECGGN--VINDEEHGESVCADCGLVVEADSVDRGPEWRAFDSREKD-EKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
+ D GLST I
Sbjct: 87 TMHDKGLSTNI 97
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 28/126 (22%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 21 GLCPDCETET-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 78
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
+ D GL+T I W+NR +N + +D+ GQ+
Sbjct: 79 TQSMHDRGLTTTID----------------WRNRDANGH----------SMSADKHGQLH 112
Query: 124 YIRRWK 129
+R W+
Sbjct: 113 RLRVWQ 118
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG
Sbjct: 40 TETKCPECGSK-KLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N A L +WQ + +R L A
Sbjct: 98 PITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALS 157
Query: 111 TIATMSDRIGQMRYIR 126
+ S R+G R +R
Sbjct: 158 ELDRDSSRLGLPRSVR 173
>gi|330833963|ref|YP_004408691.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566102|gb|AEB94207.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 305
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
+++FD G+ +CSE G V+E +D+ EWR F E + RVGGP N + D G
Sbjct: 13 QDKIIFDADRGEYICSENGEVIEERIVDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDRG 71
Query: 72 LSTVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
LST+I K A G L +WQ R S+ DR L A + + + +G
Sbjct: 72 LSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNELERIGNLLG 131
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC+ CGLV+E+ ID EWR F + D RVG PT
Sbjct: 31 CPECGGR--LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKS-RVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 88 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIG 120
M+ +G
Sbjct: 148 MASALG 153
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C + D G+TVCS+CGLV+E+ S+D EWR F SG+ D RVG PT
Sbjct: 60 CPECGGR--LASDTEHGETVCSDCGLVVEADSVDRGPEWRAF--NSGERDSKSRVGAPTT 115
Query: 65 PLLADGGLSTVIA 77
++ D GLST I
Sbjct: 116 NMMHDKGLSTNIG 128
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRIG 120
M +G
Sbjct: 140 RMVSALG 146
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC+ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCAECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRIG 120
M +G
Sbjct: 140 RMVSALG 146
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 43 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 100
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 101 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 160
Query: 114 TMSDRIG 120
M +G
Sbjct: 161 RMVSALG 167
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+
Sbjct: 12 CPSCGDK-KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++ D + G+ C CG V+ D +EWR+FAN+ D + RVG T+
Sbjct: 12 CPSCGDK-KMITDETTGELFCGRCGFVMSEKISDTGAEWRSFAND--DTNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 38 TETVCPECGSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 95
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 96 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 155
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 156 ELDRMASALGLPRNVR 171
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TENVCPECGSR-QLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAFDHDQRVKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 154 ELDRMASALGLPRNVR 169
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K ++V D+ +G+T CS+CG VL + EWR+F +E GD R G PT+
Sbjct: 12 CPRCAKG-KLVTDNESGETFCSKCGFVLTEKLQEAGPEWRSFTQDEHGDR--ARAGAPTS 68
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L+S+ L W +R P DR AF +
Sbjct: 69 LTMHDMGLATIINPANKDASGRPLTSTMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELN 128
Query: 114 TMSDRI 119
+ D++
Sbjct: 129 RLKDKL 134
>gi|348673371|gb|EGZ13190.1| hypothetical protein PHYSODRAFT_361176 [Phytophthora sojae]
Length = 308
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C +C +VV D SAGD VC CG++L ID++ EWRTFAN+ DP RVG
Sbjct: 10 CRECG-SADVVTDFSAGDVVCRSCGMILGERIIDDSPEWRTFANDDRGGDPAAKSRVGDV 68
Query: 63 TNPLLADGGLSTVIAKPN----GASGE 85
+ L LST + GA GE
Sbjct: 69 ADARLNSLSLSTYLVDTKKSGGGADGE 95
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE FD + G+ VC CG VLE + +DE EWR F + R G P
Sbjct: 7 CPVCG-STEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAF-DPDQRARRARTGAPMTL 64
Query: 66 LLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N +G + S L WQ R +R L A +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 115 MSDRIGQMRYIRRWK 129
M+ QMR RR K
Sbjct: 125 MA---AQMRLPRRVK 136
>gi|440802920|gb|ELR23836.1| transcription factor tfiib repeat domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 371
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC ++ + D ++GDT+C +CGLV+ ID SEWR FA+ GD DP R +
Sbjct: 32 CHDCGT-SDFIEDFASGDTICLQCGLVVPDRIIDTRSEWRNFADNEGD-DPSRASR-ADE 88
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-----------LGRWQNRGSN--PDRGLILAFKTI 112
L GGL IA A ++ L R Q R DR ++ + T+
Sbjct: 89 SLPSGGLGCNIATSPPAQSAVSQTTTLRRPGSGGTQLARLQARSQTDKDDRKVLSGYATL 148
Query: 113 ATMSDRIGQMRYIR 126
+ ++D I IR
Sbjct: 149 SHIADLIALPEKIR 162
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 22 LCPDCETDT-IIHDPDRGEQVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 79
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 80 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 139
Query: 114 TMSDRIG 120
M +G
Sbjct: 140 RMVSALG 146
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCKECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRIG 120
M +G
Sbjct: 138 RMVSALG 144
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
TE ++D G+ VC++CG V+E + ID EWR F + S R G P + LL D GL
Sbjct: 13 TEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAF-DASQRERRSRTGAPESILLHDKGL 71
Query: 73 STVIAKPNGASGEFLSS--SLGRWQNR 97
ST I +G L RWQ+R
Sbjct: 72 STDIGIDRSLTGLMREKMYRLRRWQSR 98
>gi|448321391|ref|ZP_21510871.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
gi|445604251|gb|ELY58202.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
Length = 325
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--VISDTEHAETVCQDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D S G+ VC CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPICG-STEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I +G L +WQ+R +R L A + ++ +
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 121 QMRYI 125
R++
Sbjct: 125 LPRHV 129
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LIADDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPENVR 162
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 26 LCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 83
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 84 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 143
Query: 114 TMSDRIG 120
M +G
Sbjct: 144 RMVSALG 150
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + C CGLVLE ID EWR F ++ RVG
Sbjct: 35 TKTVCPECGSR-QLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGA 92
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 93 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 152
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 153 ELDRMASALGLPRNVR 168
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGAS 83
+C +CGLVL+ ID EWR F N S RVG P + D GL+T I K A
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 84 GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
G LSS L +WQ R D R L A I M+ +G R +R
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 112
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ G+ C +CG V+ D EWR+F+ E G DP R G PT+ + D GL+T
Sbjct: 1 MLTDNDTGERFCGKCGFVISETLQDSGPEWRSFSKEGG-LDPTRTGAPTSLAIHDRGLAT 59
Query: 75 VIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATMSDRIG 120
+I N +SG+ L+SS L W +R ++ DR L A + + D++
Sbjct: 60 IINPINRDSSGKPLTSSMKSTIERLRTWDSRSKVHASSDRNLRQALSELTRLKDKLA 116
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPTN 64
C C K ++V D+ +G+ C++CG V+ + EWR+FA +E GD R G PT+
Sbjct: 11 CQRCGK-GKLVTDNESGEMFCAKCGFVMTEKLQESGPEWRSFAHDEHGDR--ARTGAPTS 67
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I N ASG L++S L W NR P DR AF +
Sbjct: 68 LTMHDMGLATIINPANRDASGRPLAASMKSTIDRLRTWDNRSQVHEPVDRNYRQAFSELN 127
Query: 114 TMSDRIG 120
+ D++
Sbjct: 128 RLKDKLA 134
>gi|448492013|ref|ZP_21608681.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692231|gb|ELZ44412.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 320
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVCS+CGLV+E S+D EWR F N S + RVG PT
Sbjct: 58 CPECDGRLATDTEH--GETVCSDCGLVVEEDSVDRGPEWRAF-NSSERDSKSRVGAPTTN 114
Query: 66 LLADGGLSTVIA 77
++ D GLST I
Sbjct: 115 MMHDKGLSTNIG 126
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 34 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 90
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPENVR 162
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D + G+TVCS+CGLV++ ID EWR F ++ D RVG PT ++ D GLST I
Sbjct: 44 DTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQKS-RVGAPTTNMMHDKGLSTNIG 102
Query: 78 -KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRIG 120
+ A G LSS L W R D R L A I M+ +G
Sbjct: 103 WQDKDAYGNSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDRMASGLG 156
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|325187852|emb|CCA22395.1| transcription initiation factor IIB putative [Albugo laibachii
Nc14]
Length = 303
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV---RVGGP 62
C DC ++V D+ AGD VC CG+VL +D+T EWRTF+N+ D RVG
Sbjct: 8 CVDCGSD-DIVTDYGAGDVVCRSCGIVLGERIVDDTPEWRTFSNDDRGGDATSKSRVGQV 66
Query: 63 TNPLLADGGLSTVI 76
+ + D L+TV+
Sbjct: 67 EDQGIEDATLTTVL 80
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV+E+ ID EWR F + D RVG PT
Sbjct: 32 CPECGGRLAADTEH--GETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKS-RVGAPTTN 88
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G LSS L W R D R L A I
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 148
Query: 115 MSDRIG 120
M+ +G
Sbjct: 149 MASALG 154
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C + D G+TVCS+CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 60 CPECGGR--LASDTEHGETVCSDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 115
Query: 65 PLLADGGLSTVIA-KPNGASGEFLS 88
++ D GLST I + A G+ LS
Sbjct: 116 NMMHDKGLSTNIGWQDKDAYGKSLS 140
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D S G+ VC CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPICG-STEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAF-DASQREKRARAGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I +G L +WQ+R +R L A + ++ +
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLR 124
Query: 121 QMRYI 125
R++
Sbjct: 125 LPRHV 129
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 155 ELDRMASALGLPRNVR 170
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 40 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 97
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 98 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 157
Query: 115 MSDRIGQMRYIR 126
M+ +G R IR
Sbjct: 158 MASALGLPRNIR 169
>gi|393234326|gb|EJD41890.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 345
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 5 FCSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW------RTFANESGDNDPV 57
C DC+ H +V + S+GD VC++CGLVL +D SE RTFA+ GD DP
Sbjct: 26 ICPDCRDPHPRIVEEFSSGDLVCADCGLVLGDRIVDTRSECARRASGRTFADNEGD-DPS 84
Query: 58 RVGGPTNPLLADG-GLSTVIAKPNGASG 84
RVG +PLL + LST I + +G
Sbjct: 85 RVGAAQDPLLDEAEQLSTSIGFRDDGTG 112
>gi|448407770|ref|ZP_21573965.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445675020|gb|ELZ27555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 322
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C V D ++G+ C CGLV+E+ ID EWR F + G RVG P
Sbjct: 25 EASCPECDGR--VTRDEASGEATCDACGLVVETDEIDRGPEWRDFGGD-GREQKSRVGAP 81
Query: 63 TNPLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKT 111
L+ D GLST I N A G LS L W R D R L AF
Sbjct: 82 MTELMHDKGLSTNIGWQNEDAYGSPLSDRQRTRMERLRTWDERFRTKDAQERNLKQAFGE 141
Query: 112 IATMS 116
I M+
Sbjct: 142 IDRMA 146
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKQGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ VCS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 15 CPECG-SSQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESR-ARTGSPMTY 72
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ N S G+ + + L +WQ R + +R L A + +
Sbjct: 73 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 132
Query: 115 MS 116
M+
Sbjct: 133 MA 134
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+TVC +CGLV+E ID EWR F + D RVG PT
Sbjct: 26 CPECGGR--LAADSEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKDQKS-RVGAPTTN 82
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 83 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 142
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 143 MASALGLPENVR 154
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R IR
Sbjct: 159 MASALGLPRNIR 170
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 155 ELDRMASALGLPRNVR 170
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-IVHDPDRGERVCDECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D+ + VC+ECGLV++ ID EWR F ++ RVG P
Sbjct: 41 CPECGSR-QLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRS-RVGAPMTF 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R IR
Sbjct: 159 MASALGLPRNIR 170
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + C++CGLV+ + +D EWR F +E RVG P
Sbjct: 34 CPECGSKN-LVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKR-ARVGAPMTY 91
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS 116
+ D GLST++ + G++ +W + + +R I A I M+
Sbjct: 92 RIHDKGLSTLVTWSSPGQGQYKLKKRQQWTHIANTTERSFIFALSEIDRMA 142
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 34 CPECGGR--LISDDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQKS-RVGAPTTN 90
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 91 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 151 MASALGLPENVR 162
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C C ++V D+ +G+ CS+CG V+ + EWR+F + G N R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEGGNK-ARAGA 62
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFK 110
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 63 PTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFS 122
Query: 111 TIATMSDRIG 120
+ + D++
Sbjct: 123 ELNRLKDKLA 132
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 36 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 93
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 94 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 153
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 154 ELDRMASALGLPRNVR 169
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 20 LCPDCETDT-IVHDPDRGERVCEECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 77
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGHSMSAEKQGQIHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRIG 120
M +G
Sbjct: 138 RMVSALG 144
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T ++ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETET-IIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|448310263|ref|ZP_21500109.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445608424|gb|ELY62275.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
Length = 354
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECAGR--LVSDAEHAETVCEDCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDND-PVRVGGPTN 64
C +C +H G+TVC +CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 41 CPECDGRLATDTEH--GETVCEDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 96
Query: 65 PLLADGGLSTVIA-KPNGASGEFLS 88
++ D GLST I + A G+ LS
Sbjct: 97 NMMHDKGLSTNIGWQDKDAYGKSLS 121
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 35 CPECNGR--LVADDEHAETVCADCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDR 151
Query: 115 MSDRIG 120
M+ +G
Sbjct: 152 MASALG 157
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 35 CPECGSE-KLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 92
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 93 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 152
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 153 DSSRLGLPRSVR 164
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 65 CPECGGR--LITDDEHAETVCEDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 121
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 122 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 181
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 182 MASALGLPENVR 193
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + D + RVG PT
Sbjct: 24 CPECG--GKLAADTEHGETVCRDCGLVVEEDEIDRGPEWRAFDSAEKD-EKSRVGAPTTN 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 81 MMHDKGLSTNIDWRDQDAYGNSLDSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 140
Query: 115 MSDRIG 120
M+ +G
Sbjct: 141 MASALG 146
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 31 CPECGGR--LVSDTEHAETVCDDCGLVVDEGEIDRGPEWRAF-DASEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I N A G+ LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 MASALGLPKNVR 159
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAF----- 109
+ D GL+T+I N A+G+ LS+S L W NR P DR AF
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 110 -KTIATMSDR-IGQMRYIRR 127
KT +SD I + YI R
Sbjct: 129 LKTKLALSDTVIEKTAYIYR 148
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 152 ELDRMASALGLPRNVR 167
>gi|448418768|ref|ZP_21579945.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
gi|445676162|gb|ELZ28686.1| transcription initiation factor IIB 5 [Halosarcina pallida JCM
14848]
Length = 321
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F +++ + + R G P
Sbjct: 27 CPECNGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSFEDDNSNRE--RTGAPLTA 80
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIATM 115
D GLST I + G LS S L R Q RG S +R L + +
Sbjct: 81 ARHDRGLSTTIGRRTDGKGRTLSGSKRCQLARLRREQTRGRFQSKAERNLAHGLGEVRRV 140
Query: 116 SDRIGQMRYIR 126
+ +G IR
Sbjct: 141 ASALGLASSIR 151
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ VC +CGLV+E ++D EWR F + D+ RVG PT
Sbjct: 29 CPECDGR--LLTDEEHGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKS-RVGAPTTK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSSLG-----------RWQNRGSNPDRGLILAFKTIA 113
++ D GLST I + A G+ LSS R++ R S +R L A I
Sbjct: 86 MMHDKGLSTNIGWQDKDAYGKTLSSRQRQQMQRLRTWNERFRTRDSK-ERNLKQALGEID 144
Query: 114 TMSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 145 RMASALGLPQAVR 157
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++V D+ G+ +CS CGLV++ IDE EWR F +E ++ R G P
Sbjct: 14 CPECG-SSQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESR-ARTGSPMTY 71
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ K + G+ + + L +WQ R + +R L A + +
Sbjct: 72 TIHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 131
Query: 115 MS 116
M+
Sbjct: 132 MT 133
>gi|237838491|ref|XP_002368543.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|211966207|gb|EEB01403.1| transcription initiation factor IIB, putative [Toxoplasma gondii
ME49]
gi|221484187|gb|EEE22483.1| transcription initiation factor IIB, putative [Toxoplasma gondii
GT1]
gi|221505834|gb|EEE31479.1| transcription initiation factor IIB, putative [Toxoplasma gondii
VEG]
Length = 464
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 113 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 172
Query: 59 VGGPTNPLLADGGLSTVI 76
VG + L DGG+ T +
Sbjct: 173 VGDALDAWLEDGGIGTTM 190
>gi|448355612|ref|ZP_21544362.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445634733|gb|ELY87908.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 317
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T V+ D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-VIHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGHSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|448331025|ref|ZP_21520299.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610149|gb|ELY63924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 324
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D G+ C+ECGLVL++ +ID EWRT +++ ++ RVG P +
Sbjct: 30 CPECDGS--VHRDEEHGERTCTECGLVLDADAIDYGPEWRTLDDDA--DERRRVGAPVSK 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIAT 114
L D GLST I + A G +S L W R ++ D R L AF I
Sbjct: 86 LRHDKGLSTTIGWRDEDAYGNRISGRKREQLQRLRTWNERFTSKDAAERNLKQAFGEIER 145
Query: 115 MSDRIG 120
M+ +G
Sbjct: 146 MASALG 151
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 28 CPECGGR--VLSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T +FD+ G +C++CG V+ H ID EWR F E + R GGP N
Sbjct: 39 VCPYCG-STTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETR-ARAGGPLN 96
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
L ++ +T+ ASG+ L +WQ R ++ +R +I A ++
Sbjct: 97 RLTSEALTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSR 156
Query: 115 MSDRIG 120
+S ++G
Sbjct: 157 ISSQLG 162
>gi|289582685|ref|YP_003481151.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281888|ref|ZP_21473181.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532238|gb|ADD06589.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445577517|gb|ELY31950.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 317
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DC+ T +V D G+ VC ECGLVL ID EWR F N ++ RVG P
Sbjct: 19 GLCPDCETDT-IVHDPDRGERVCGECGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPL 76
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 77 TQSMHDRGLTTTIDWRNKDANGRSMSADKHGQLHRLRVWQERIRTKNAGERNLKYALSEI 136
Query: 113 ATMSDRIG 120
M +G
Sbjct: 137 DRMVSALG 144
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + ++ D + G+ CS+CG V E EWR+F+ + GDN R G PT+
Sbjct: 11 CQRCNRGA-ILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNR-TRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAF----- 109
+ D GL+T+I N A+G+ LS+S L W NR P DR AF
Sbjct: 69 AIHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDR 128
Query: 110 -KTIATMSDR-IGQMRYIRR 127
KT +SD I + YI R
Sbjct: 129 LKTKLALSDTVIEKTAYIYR 148
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVGGPT 63
C C ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G PT
Sbjct: 11 LCPRCA-QGKLVTDNESGEMFCSKCGFVMSEKLQESGPEWRSFTQDEHGDR--ARAGAPT 67
Query: 64 NPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTI 112
+ + D GL+T+I N A+G+ LS+S L W NR P DR AF +
Sbjct: 68 SLTMHDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSEL 127
Query: 113 ATMSDRIG 120
+ D++
Sbjct: 128 NRLKDKLA 135
>gi|300711996|ref|YP_003737810.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|448295686|ref|ZP_21485750.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299125679|gb|ADJ16018.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445583785|gb|ELY38114.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
Length = 320
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+TVC++CGLV+ S+D EWR F + D RVG PT
Sbjct: 25 CPECS--GQLISDDEHGETVCADCGLVVAEDSVDRGPEWRAFDSREKDQKS-RVGAPTTN 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQRQKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRIG 120
M+ +G
Sbjct: 142 MASALG 147
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECG-STELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRIGQMRYIR 126
S R+G R +R
Sbjct: 131 RDSSRLGLPRSVR 143
>gi|399578576|ref|ZP_10772323.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399236462|gb|EJN57399.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F E D++ R G P
Sbjct: 24 CPECSGHVAT----NAVETVCEDCGLVIADQEIDHGPEWRSF--EDDDSNRERTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS-------LGRWQNRG 98
D GLST I + A G LS S L R Q RG
Sbjct: 78 ARHDRGLSTEIGRRTDAKGRTLSGSKRRQLARLRREQTRG 117
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC+ T +V D G+ VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 28 LCPDCETET-IVHDPDRGERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 85
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 86 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 145
Query: 114 TMSDRIG 120
M +G
Sbjct: 146 RMVSALG 152
>gi|401403652|ref|XP_003881529.1| At4g37010, related [Neospora caninum Liverpool]
gi|325115942|emb|CBZ51496.1| At4g37010, related [Neospora caninum Liverpool]
Length = 455
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 5 FCSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-----GDNDPVR 58
+C + + +VFD S+GD +C ECGL++E + E EWR F+ E+ G D R
Sbjct: 110 YCGPARNGAQTIVFDSSSGDQLCRECGLIVEEKVLSEEQEWRNFSAEAASSSRGGADRNR 169
Query: 59 VGGPTNPLLADGGLSTVI 76
VG + L DGG+ T +
Sbjct: 170 VGDALDAWLEDGGIGTTM 187
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 38 EVMCPECGSRN-LEHDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAP 95
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
+ D GLST+I N S G+ +SS L +WQ R + +R L A
Sbjct: 96 MTYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSE 155
Query: 112 IATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 156 LDRMASALGLPRTVR 170
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEERIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 160
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E + RVG P
Sbjct: 33 CPECG-SPRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRS-RVGAPVTY 90
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 91 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 151 MASALGLPKSVR 162
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 11 CPECGSE-KLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 68
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 69 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 128
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 129 DSSRLGLPRSVR 140
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRIGQMRYIR 126
++ + + IR
Sbjct: 137 LTGALSLPKQIR 148
>gi|448314502|ref|ZP_21504190.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445594820|gb|ELY48961.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 316
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C DC T ++ D G+ VC ECGLVL ID EWR F + D RVG P
Sbjct: 20 LCPDCDTAT-IIHDPDRGERVCEECGLVLTEDPIDYGPEWRAFNAQEHDQ-LSRVGAPLT 77
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +SS L WQ R + +R L A I
Sbjct: 78 QSMHDRGLTTTIDWRNKDANGRSMSSEKHGQLHRLRVWQERIRTKNAGERNLKYALSEID 137
Query: 114 TMSDRIG 120
M +G
Sbjct: 138 RMVSALG 144
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC+ CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C H E ++ +T+C +CGLVL + ID EWR+FA+++ +P R G
Sbjct: 25 TPVSCPECGGHPE----NTGEETICGDCGLVLSEYRIDHGPEWRSFADDT--TNPKRTGA 78
Query: 62 PTNPLLADGGLSTVIAKPNGASG----EFLSSSLGRWQNRG---SNPDRGLILAFKTIAT 114
P D GLST I + +G +F + L R NR + +R + AF I
Sbjct: 79 PLTRSRHDRGLSTEIGRSIRLTGRKRRQF--ARLRRQHNRARISTKRERNQVYAFTEIRR 136
Query: 115 MSDRIGQMRYIR 126
++ + + IR
Sbjct: 137 LTGALSLPKQIR 148
>gi|448739674|ref|ZP_21721686.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445799293|gb|EMA49674.1| Transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 355
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C +V D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 51 SERVCPECGGR--LVEDETHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 107
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 108 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 167
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G + +R
Sbjct: 168 EIERMASALGVPKDVR 183
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDTEHAETVCDDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS 89
++ D GLST I + A G+ LSS
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGKALSS 111
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FDH G+ VC E G V+E IDE +EWR F E + R GGP + D G +
Sbjct: 26 KIIFDHGKGEYVCLETGEVIEERVIDERAEWRAFTPEERERR-ARTGGPITGTVHDMGFA 84
Query: 74 TVIAKPNG-ASGEFLS------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMR 123
T I + ASG + L +WQ R S+ DR L A + +++ +
Sbjct: 85 TSIDYADKDASGRRIIEKKAQLQKLRKWQARTRIQSSVDRNLAQALNELERIAELLNLPT 144
Query: 124 YIR 126
++R
Sbjct: 145 HVR 147
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T +FD+ G +C++CG V+ H ID EWR F E + R GGP N
Sbjct: 39 VCPYCG-STTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEAR-ARAGGPLN 96
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
L ++ +T+ ASG+ L +WQ R ++ +R +I A ++
Sbjct: 97 RLTSEALTTTIDWATKDASGKELDIKRKLEILKYRKWQQRVRVQTSYERNIIQAMNELSR 156
Query: 115 MSDRIG 120
+S ++G
Sbjct: 157 ISSQLG 162
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDR 163
Query: 115 MSDRIG 120
M+ +G
Sbjct: 164 MASALG 169
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 40 TATVCPECGSK-QLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAFDHDQRMKRS-RVGA 97
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 98 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 157
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 158 ELDRMASALGLPRNVR 173
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 78 VCPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTT 134
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIA 113
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 135 ALMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEID 194
Query: 114 TMSDRIG 120
MS +G
Sbjct: 195 RMSSALG 201
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C C EVV D+ + VC++CG V++ + D EWR F +E RVG P
Sbjct: 32 EIVCPICGSK-EVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKR-CRVGAP 89
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKT 111
+ D GLSTVI N S G+ LS++ L +WQ R +R L A
Sbjct: 90 MTYTIHDKGLSTVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSE 149
Query: 112 IATMSDRIGQMRYIR 126
+ ++ ++G R++R
Sbjct: 150 LDRITSKLGLPRHVR 164
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LISDTEHAETVCQDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G+ + + G V+ +++ + EWR F +E GD D R G P + D GLST
Sbjct: 2 VVTDPDTGELIRKDTGEVISDNALSQEKEWRAFGSE-GDADRARTGAPVSLAFHDMGLST 60
Query: 75 VIAKPN-GASGEFLSSS----LGRWQ------NRGSNPDRGLILAFKTIATMSDRIGQMR 123
VI K + ASG + S+ +GR + + S +R L AF ++ + DR+G
Sbjct: 61 VIGKESTDASGNQIDSATQMRMGRLRMWHSISHSHSPKERSLQQAFTMLSKIKDRLGLPD 120
Query: 124 YI 125
Y+
Sbjct: 121 YV 122
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+T+C +CGLV+E ++D EWR F + N+ RVG PT
Sbjct: 25 CPECS--GKLIADSGHGETICEDCGLVVEVDNVDRGPEWRAF-DAKEKNEKSRVGAPTTN 81
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GLST I + A G L S L +W R D R L A I
Sbjct: 82 TMHDKGLSTNIDWRNKDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 141
Query: 115 MSDRIG 120
M+ +G
Sbjct: 142 MASALG 147
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C++ + VF D + G+ CS+CG V E EWR F+ + GDN R G PT+
Sbjct: 11 CQRCNKGVFLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNR-TRTGTPTSLA 69
Query: 67 LADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS---NPDRGLILAF------ 109
+ D GL+T+I N A+G+ LS+S L W NR DR AF
Sbjct: 70 MHDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRL 129
Query: 110 KTIATMSDR-IGQMRYIRR 127
KT +SD I + YI R
Sbjct: 130 KTKLALSDAVIEKTAYIYR 148
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
EVV D+ + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 45 EVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKR-CRVGAPMTYTIHDKGLS 103
Query: 74 TVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
TVI N S G+ LS++ L +WQ R +R L A + ++ ++G
Sbjct: 104 TVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLP 163
Query: 123 RYIR 126
R++R
Sbjct: 164 RHVR 167
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ C CG V+ D +EWR+FAN+ D R G T+
Sbjct: 12 CPSCGDR-KMVTDETTGELFCGRCGFVVTDKISDTGAEWRSFAND--DTSRARTGAGTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N ++G+ L+SS L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTVIGAANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMGK 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C ++ D +TVC +CGLV+E ID EWR F ++G+ D RVG PT
Sbjct: 31 CPECGGR--LISDTEHAETVCDDCGLVVEEGEIDRGPEWRAF--DAGEKDEKSRVGAPTT 86
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 NMMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEID 146
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 RMASALGLPESVR 159
>gi|330834358|ref|YP_004409086.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566497|gb|AEB94602.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 304
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTN 64
C C E++FD S G VC G+V+E H ID+ EWR F +S D N RVG
Sbjct: 3 CQVCGGE-EIIFDPSRGIYVCKNDGVVVEDHIIDQGPEWREF--DSADRNKKRRVGSGVT 59
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS-SLGRWQN--RGSNPDRGLILAFKTIATMSDRIGQ 121
+ D G +TVI G + L L R QN R ++ D+ L+ + + R+G
Sbjct: 60 ERVHDKGFTTVIG--GGKVKDRLKVIRLQRLQNKSRVTSKDKKLVTFLSILNGEAARMGL 117
Query: 122 MRYIRR---WKIKSLVEAEIKTH---YWLLACTLL 150
Y++ + I+ LVE + Y L+ TL
Sbjct: 118 PNYVKEEAAFVIRRLVEMGLARRIDMYVLVGITLF 152
>gi|448474133|ref|ZP_21602101.1| Zinc finger TFIIB-type domain protein [Halorubrum aidingense JCM
13560]
gi|445818413|gb|EMA68272.1| Zinc finger TFIIB-type domain protein [Halorubrum aidingense JCM
13560]
Length = 123
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C +V D G+TVC +CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 41 CPECSGR--LVTDTEHGETVCEDCGLVVEQDSVDRGPEWRAF--NSGERDSKSRVGAPTT 96
Query: 65 PLLADGGLSTVIA-KPNGASGEFLS 88
++ D GLST I + A G+ LS
Sbjct: 97 NMMHDKGLSTNIGWQDKDAYGKSLS 121
>gi|448736775|ref|ZP_21718861.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805817|gb|EMA56015.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 330
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C E DH G+T C ECG V++ + ID EWR+ + + RVG PT
Sbjct: 33 CPECDGRLE--DDHKHGETACVECGFVVDENEIDHGPEWRSHTADEREQRS-RVGSPTTK 89
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRG--SNP-DRGLILAFKTIAT 114
+L D G+S+ I N A G LSS L W R +NP +R L A I
Sbjct: 90 MLHDDGVSSEIGWRNVDAYGNSLSSRQRQKMNRLRTWHTRSKTTNPQERNLKHALGEIKR 149
Query: 115 MSDRIG 120
M+ +G
Sbjct: 150 MASALG 155
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +++ D+ + C CGLVLE ID EWR F ++ RVG P
Sbjct: 38 VCPECGSR-QLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRS-RVGAPMT 95
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N S G +SS L +WQ R + +R L A +
Sbjct: 96 FTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELD 155
Query: 114 TMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 156 RMASALGLPRNVR 168
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T + C C +++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G
Sbjct: 7 ITGSKCPACGDK-KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTG 63
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLSTVI N ++G+ LS+S L W +R S+ DR L A
Sbjct: 64 AGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQAL 123
Query: 110 KTIATMSDRIG 120
+ + D++
Sbjct: 124 NEMDKLKDKLA 134
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDSDQ-QMKRSRVGAPMTYAIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMRYIR 126
N S G+ +SS L +WQ R + +R L A + M+ +G R +R
Sbjct: 115 WRNRDSYGQSISSKNRAQLYRLRKWQRRIRIYNAAERNLAFALSELDRMASALGLPRTVR 174
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D+ + VCS+CGLV+++ +DE EWR F ++ RVG P + D GLST+I
Sbjct: 56 DYERAELVCSDCGLVVDAELVDEGPEWRAFDHDQRMKRS-RVGAPMTYTIHDKGLSTMID 114
Query: 78 KPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMRYIR 126
N S G+ +SS L +WQ R + +R L A + M+ +G R +R
Sbjct: 115 WRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVR 174
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ D+ RVG PT
Sbjct: 30 CPEC--GGQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS 89
++ D GLST I + A G+ L S
Sbjct: 87 MMHDKGLSTNIGWQDKDAYGKSLDS 111
>gi|448314361|ref|ZP_21504059.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445595188|gb|ELY49300.1| transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 352
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC +CGLV+E ID EWR F D RVG PT
Sbjct: 28 CPECGGR--LISDTEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKS-RVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 85 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 144
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 145 MASALGLPENVR 156
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ C+ CGLV++ ID EWR + D RVG PT
Sbjct: 26 CPECGG--QLNHDSEHGERACTGCGLVVDEDEIDHGPEWRAHTQKERDQKS-RVGAPTTN 82
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRW--QNRGSNP-DRGLILAFKTIAT 114
L+ D GLST I+ N A G LS L W ++R NP +R L AF I
Sbjct: 83 LMHDKGLSTTISWQNKDAYGNALSPEKRQRMQRLRTWDERSRTRNPKERNLKQAFAEIER 142
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 143 MASALGLPQSVR 154
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+T + C C +++ D + G+ C +CG V+ D +EWR+F+N+ G+ R G
Sbjct: 19 VTGSKCPACGDK-KMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNK--ARTG 75
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAF 109
T+ + D GLSTVI N ++G+ LS+S L W +R S+ DR L A
Sbjct: 76 AGTSLTMHDMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQAL 135
Query: 110 KTIATMSDRIG 120
+ + D++
Sbjct: 136 NEMDKLKDKLA 146
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 23 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 81
Query: 74 TVIAKPN-GASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T I N A+G+ L L RWQ R S+ +R L A + +SD++
Sbjct: 82 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 141
Query: 123 RYIR 126
R ++
Sbjct: 142 RNVK 145
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC+ CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++++D G+ +C G V+E ID+ EWR F E + R+GGP + D GL+
Sbjct: 19 QIIYDPEMGEYICLLTGEVIEEKVIDDRPEWRAFTPEERERRS-RIGGPLTSTVHDRGLA 77
Query: 74 TVIAKPN-GASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T I N A+G+ L L RWQ R S+ +R L A + +SD++
Sbjct: 78 TAIDYSNKDATGKRLEPRRRLEIQKLRRWQARSRIQSSIERNLAQAMNELDRLSDQLNLP 137
Query: 123 RYIR 126
R ++
Sbjct: 138 RNVK 141
>gi|448512195|ref|ZP_21616309.1| transcription initiation factor TFB 5 [Halorubrum distributum JCM
9100]
gi|445694515|gb|ELZ46640.1| transcription initiation factor TFB 5 [Halorubrum distributum JCM
9100]
Length = 140
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C +H G+TVCS+CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 56 CPECDGRLATDTEH--GETVCSDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 111
Query: 65 PLLADGGLSTVIA 77
++ D GLST I
Sbjct: 112 NMMHDKGLSTNIG 124
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ V + +C +CGLVL+ +ID EWR F N S + RVG PT
Sbjct: 97 LCPECESEAIV---QDGDELLCEDCGLVLDEQTIDRGPEWRAF-NASERDSKSRVGAPTT 152
Query: 65 PLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
+ D GL+T I K A G LS S L WQ R D R L A +
Sbjct: 153 QTMHDKGLTTQIDWKNKDAYGNSLSSRKREQMSRLRTWQERVRTKDAGERNLQFALSEMD 212
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 213 RMASALG 219
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ V + +C +CGLVL+ +ID EWR F N + + RVG PT
Sbjct: 28 CPECESDAIV---QDGDELLCEDCGLVLDEQAIDHGPEWRAF-NATERDSKSRVGAPTTQ 83
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L WQ R D R L A +
Sbjct: 84 TMHDKGLTTQIDWKNKDAYGNSLSSKKRKQMSRLRTWQERVRTKDAGERNLQFALSEMDR 143
Query: 115 MSDRIGQMRYIR 126
M+ +G R R
Sbjct: 144 MASALGVPRSTR 155
>gi|326427942|gb|EGD73512.1| hypothetical protein PTSG_05216 [Salpingoeca sp. ATCC 50818]
Length = 370
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 11 KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDN-DPVRVGGPTNPLL 67
KH VV D+ AGD VCSECGLV+ +D SEWR+F N + DN D RVG + LL
Sbjct: 29 KHAPVVEDYRAGDMVCSECGLVVGDRVVDVGSEWRSFGNSDKKKDNKDRSRVGLEEDVLL 88
Query: 68 -ADGGLSTVIAKPNGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRI 119
D GL T+ A PN + + RWQ+R S R L + IA ++ ++
Sbjct: 89 EGDQGL-TISAIPNCPNADV---PWMRWQSRMGPSGSTRTLKSVYGKIANLASKL 139
>gi|300712884|ref|YP_003738696.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|448295398|ref|ZP_21485466.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|299126568|gb|ADJ16905.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
gi|445584335|gb|ELY38658.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 340
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C +V D G+T C+ECGLV++ ID EWR F + D R G PT
Sbjct: 32 VCPECGGR--LVNDAEHGETTCAECGLVVKEDEIDHGPEWRAFDSAERDRKK-RTGAPTT 88
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIA 113
L+ D GLS+ I N A G LS S L W R ++ +R L A I
Sbjct: 89 KLMHDKGLSSQIGWQNKDAYGNALSSRKRQQMSRLRTWDERFRTRNSKERNLKQALAEIE 148
Query: 114 TMSDRIG 120
M +G
Sbjct: 149 RMGSALG 155
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLIVEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ G+ +C +CG V+E ID EWR F +E + RVG P
Sbjct: 33 CPECG-SPRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRS-RVGAPITY 90
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GL+T+I N G+ +S L +WQ R + +R L A +
Sbjct: 91 TIHDKGLTTIIDWNNKDYYGKAISVRTRAQLFRLRKWQRRIRISNATERNLAFALSELDR 150
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 151 MASALGLPKSVR 162
>gi|448520818|ref|ZP_21618151.1| transcription initiation factor TFB 5 [Halorubrum distributum JCM
10118]
gi|445702954|gb|ELZ54893.1| transcription initiation factor TFB 5 [Halorubrum distributum JCM
10118]
Length = 137
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C +H G+TVCS+CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 56 CPECDGRLATDTEH--GETVCSDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 111
Query: 65 PLLADGGLSTVIA 77
++ D GLST I
Sbjct: 112 NMMHDKGLSTNIG 124
>gi|448469599|ref|ZP_21600281.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808936|gb|EMA58987.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 337
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E + ID EWR F ++ D RVG PT
Sbjct: 29 CPECGG--QLATDTEHGETVCVDCGLVVEENEIDRGPEWRAFDSKEKDQK-SRVGAPTTN 85
Query: 66 LLADGGLSTVI 76
++ D GLST I
Sbjct: 86 MMHDKGLSTNI 96
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+VLE ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 46 GELIHEETGIVLEEDRIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 104
Query: 81 GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A + M+ +G R +R
Sbjct: 105 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVR 160
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRS-LEQDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLPRTVR 170
>gi|288930943|ref|YP_003435003.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288893191|gb|ADC64728.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 346
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C +V DHS G+ C +CG+V+E +D EWR++ +E G R G P
Sbjct: 50 DGTCPECGS-PRLVTDHSRGEVFCQDCGIVVEDARLDYGPEWRSYDSERGMQR-ARAGPP 107
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTI 112
L D G +T I + G LS + L +WQ++ S+ +R L+ + +
Sbjct: 108 VVLTLHDKGFTTTIGNDRDSHGNPLSPKTRIQFTRLRKWQSKIRTNSSAERNLVRSLMEL 167
Query: 113 ATMSDRIGQMRYI 125
++ +G + I
Sbjct: 168 ERITSSLGLPKSI 180
>gi|807034|gb|AAB32638.1| transcription factor IIB, TFIIB=sua7-1 variant [Saccharomyces
cerevisiae, Peptide Partial Mutant, 68 aa]
Length = 68
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D S+WRTF+N+ + +DP RVG +
Sbjct: 5 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSKWRTFSNDDHNGDDPSRVGEAS 64
Query: 64 NPLL 67
NPLL
Sbjct: 65 NPLL 68
>gi|448431680|ref|ZP_21585191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687456|gb|ELZ39739.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 115
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F ++ DN RVG PT
Sbjct: 29 CPECGG--QLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDN-KSRVGAPTTN 85
Query: 66 LLADGGLSTVIA 77
++ D GLST I
Sbjct: 86 MMHDKGLSTNIG 97
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC+ CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGIDRTLTGLMREKMYRLRKWQSR 98
>gi|448479384|ref|ZP_21604236.1| transcription factor TFIIB cyclin-related protein [Halorubrum
arcis JCM 13916]
gi|445822662|gb|EMA72426.1| transcription factor TFIIB cyclin-related protein [Halorubrum
arcis JCM 13916]
Length = 385
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H G+TVC +CGLV+E ID EWR F ++ D+ RVG PT
Sbjct: 30 CPECGGQLATDTEH--GETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKS-RVGAPTTN 86
Query: 66 LLADGGLSTVIA 77
++ D GLST I
Sbjct: 87 MMHDKGLSTNIG 98
>gi|322371117|ref|ZP_08045669.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549107|gb|EFW90769.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 324
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D G+ VC +CGLV+E ++D EWR F + S RVG PT
Sbjct: 29 CPECGGP--LVTDEERGERVCDDCGLVVEEDAVDRGPEWRAF-DASEREQKSRVGAPTTN 85
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G L S L +W R D R L A I
Sbjct: 86 MMHDKGLSTNIDWRDRDAYGNSLGSRQREKMQRLRKWNERFRTRDSKERNLKQALGEIDR 145
Query: 115 MSDRIG 120
M+ +G
Sbjct: 146 MASSLG 151
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA+++ +DP R G P D GLST I
Sbjct: 23 HAEGRETVCGDCGLVVSEYAIDHGPEWRSFADDA--SDPKRTGAPLTRSRHDRGLSTEIG 80
Query: 78 KPNGASGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
+ G + L R NR + +R + AF I ++ + IR
Sbjct: 81 RSTRLKGRKRRQMARLRRQHNRARISTKRERNQVYAFTEIRRLASALSLPERIR 134
>gi|68073879|ref|XP_678854.1| transcription initiation factor [Plasmodium berghei strain ANKA]
gi|56499453|emb|CAH98814.1| transcription initiation factor TFIIB, putative [Plasmodium
berghei]
Length = 366
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVG 60
+ C DCK+ ++ D S G +C+ CGLV+E++ + E EWR F+N +S ND RVG
Sbjct: 46 NNICPDCKEKGIIICDTSEGTQICNGCGLVVETNILSEEQEWRNFSNDGQSKGNDRNRVG 105
Query: 61 GPTNPLLADGGLSTVIAK 78
++ L + ST K
Sbjct: 106 ETSDIWLENNLTSTTFIK 123
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GLV+E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGLVIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQTLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRIG 120
M+ +G
Sbjct: 150 DRMASALG 157
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+ +C +CGLV+E ID EWR F +E + RVG P
Sbjct: 32 CPECG-SPRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRS-RVGAPITY 89
Query: 66 LLADGGLSTVIAKPNG-ASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 90 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 149
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 150 MASALGLPKSVR 161
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D G+TVC +CGLV+E ID EWR F + S + RVG PT
Sbjct: 28 CPECS--GQLATDTEHGETVCVDCGLVVEEDEIDRGPEWRAF-DASEKDSKSRVGAPTTN 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS 90
++ D GLST I + A G+ LS +
Sbjct: 85 MMHDKGLSTNIGWQDKDAYGKSLSGA 110
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D +TVC++CGLV+ ID EWR F + + ++ RVG PT
Sbjct: 33 AHCPECNGR--LVADDEHAETVCADCGLVVAESEIDRGPEWRAF-DAAERDEKSRVGAPT 89
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST I + A G+ LSS L W R ++ +R L A I
Sbjct: 90 TNMRHDQGLSTNIGWQDKDAYGQSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEI 149
Query: 113 ATMSDRIG 120
M+ +G
Sbjct: 150 DRMASALG 157
>gi|448726015|ref|ZP_21708442.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
gi|445797034|gb|EMA47518.1| Transcription factor TFIIB cyclin-related protein [Halococcus
morrhuae DSM 1307]
Length = 334
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
++ C +C + D + G+T C+ECGLV+ + ID EWR F + D R G
Sbjct: 28 SERVCPECGGR--LAEDEAHGETTCTECGLVVSTDEIDHGPEWRAFDSAERDRKK-RTGA 84
Query: 62 PTNPLLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFK 110
PT ++ D GLS+ I N A G LS+ L W R D R L A
Sbjct: 85 PTTKMMHDKGLSSQIGWQNKDAYGNTLSARKRQRMQRLRTWDERFRTRDSKERNLKQALG 144
Query: 111 TIATMSDRIGQMRYIR 126
I M+ +G + +R
Sbjct: 145 EIERMASALGVPKDVR 160
>gi|399576051|ref|ZP_10769808.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399238762|gb|EJN59689.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 288
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+TVC ECGLV+ ID EWR+FA++ D +P R G P D GLST I +
Sbjct: 22 ETVCGECGLVVAEDRIDRGPEWRSFADD--DTNPERTGAPLTRSRHDRGLSTEIGRSTRL 79
Query: 83 SGEFLS--SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
G + L R NR S +R + AF I + R+ +R
Sbjct: 80 KGRKRRQMARLRRQHNRARISSKRERNQVYAFTEIRRLVSRLSLPEQVR 128
>gi|448478940|ref|ZP_21603946.1| Zinc finger TFIIB-type domain protein, partial [Halorubrum arcis
JCM 13916]
gi|445822770|gb|EMA72532.1| Zinc finger TFIIB-type domain protein, partial [Halorubrum arcis
JCM 13916]
Length = 129
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C +C +H G+TVCS+CGLV+E S+D EWR F SG+ D RVG PT
Sbjct: 56 CPECDGRLATDTEH--GETVCSDCGLVVEEDSVDRGPEWRAF--NSGERDSKSRVGAPTT 111
Query: 65 PLLADGGLSTVIA 77
++ D GLST I
Sbjct: 112 NMMHDKGLSTNIG 124
>gi|448737045|ref|ZP_21719105.1| transcription initiation factor IIB, partial [Halococcus
thailandensis JCM 13552]
gi|445804603|gb|EMA54846.1| transcription initiation factor IIB, partial [Halococcus
thailandensis JCM 13552]
Length = 136
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 18 DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
D G+T C ECG V+ ID +EWR +E + RVG PT L+ DGG+ST I
Sbjct: 40 DQKHGETACVECGFVVSDDEIDHGAEWRAHTHEEHEQ-RSRVGAPTTNLMHDGGVSTEIG 98
Query: 78 -KPNGASGEFLSSSLGRWQNR 97
+ A G LS+S + NR
Sbjct: 99 WQDKDAYGNTLSASQRQKMNR 119
>gi|448467481|ref|ZP_21599493.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445812357|gb|EMA62351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 191
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N S + RVG PT + D GL+T I K
Sbjct: 42 GELIHEETGMIIEEEQIDPGPEWRAF-NHSERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 156
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
+ + C +C +++ DH + VC +CGLV++ ID EWR F +E + RVG
Sbjct: 6 LKGSVCPECGSE-DLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKR-TRVG 63
Query: 61 GPTNPLLADGGLSTVI--------AKPNGASGEFLSSSLGRWQNR---GSNPDRGLILAF 109
P + D GLST+I K A L +WQ + +R L A
Sbjct: 64 APVTYTIHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFAL 123
Query: 110 KTIATMSDRIGQMRYIR 126
+ ++ R+ R +R
Sbjct: 124 SELDRIASRLNLPRTVR 140
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 35 CPECGGR--LVSDAEHAETVCEDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 91
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 92 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 151
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 152 MASALGLPENVR 163
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRIGQMRYIR 126
+S ++G + +R
Sbjct: 135 VSSKMGLPKDVR 146
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ K + G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MS 116
M+
Sbjct: 134 MA 135
>gi|227827554|ref|YP_002829334.1| Zinc finger TFIIB-type domain-containing protein [Sulfolobus
islandicus M.14.25]
gi|227830241|ref|YP_002832021.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
L.S.2.15]
gi|229579056|ref|YP_002837454.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582193|ref|YP_002840592.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584757|ref|YP_002843259.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.27]
gi|238619711|ref|YP_002914537.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.4]
gi|284997664|ref|YP_003419431.1| Zinc finger, TFIIB-type domain protein [Sulfolobus islandicus
L.D.8.5]
gi|227456689|gb|ACP35376.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
L.S.2.15]
gi|227459350|gb|ACP38036.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.14.25]
gi|228009770|gb|ACP45532.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.G.57.14]
gi|228012909|gb|ACP48670.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
Y.N.15.51]
gi|228019807|gb|ACP55214.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.27]
gi|238380781|gb|ACR41869.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
M.16.4]
gi|284445559|gb|ADB87061.1| Zinc finger, TFIIB-type domain protein [Sulfolobus islandicus
L.D.8.5]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + +D G VC+ CG V+E +++D +WR + N N+ RVG P+ P
Sbjct: 3 CPFCGTEDTITYDMEKGMYVCTNCGSVIEDNAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLI 106
+ D G T+I A + + R QN R S D+ L+
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLV 103
>gi|448470296|ref|ZP_21600439.1| Zinc finger TFIIB-type domain protein [Halorubrum kocurii JCM
14978]
gi|445808270|gb|EMA58343.1| Zinc finger TFIIB-type domain protein [Halorubrum kocurii JCM
14978]
Length = 116
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + ++ D G+TVC++CGLV+E ID EWR F + D+ RVG PT
Sbjct: 39 CPECEGN--LISDTEHGETVCTDCGLVVEQDGIDRGPEWRAFDSSERDS-KSRVGAPTTN 95
Query: 66 LLADGGLSTVIA 77
++ D GLST I
Sbjct: 96 MMHDKGLSTNIG 107
>gi|385773223|ref|YP_005645789.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
HVE10/4]
gi|385775857|ref|YP_005648425.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
REY15A]
gi|323474605|gb|ADX85211.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
REY15A]
gi|323477337|gb|ADX82575.1| Zinc finger TFIIB-type domain protein [Sulfolobus islandicus
HVE10/4]
Length = 293
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + +D G VC+ CG V+E +++D +WR + N N+ RVG P+ P
Sbjct: 3 CPFCGTEDTITYDMEKGMYVCTNCGSVIEDNAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLI 106
+ D G T+I A + + R QN R S D+ L+
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLV 103
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 54 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 112
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 113 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 168
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA-NESGDNDPVRVG 60
T C C ++V D+ +G+ CS+CG V+ + EWR+F +E GD R G
Sbjct: 5 TKELCPRCA-QGKLVTDNESGEMFCSKCGFVITEKLQEAGPEWRSFTQDEHGDR--ARAG 61
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAF 109
PT+ + D GL+T+I N ASG L++S L W +R P DR AF
Sbjct: 62 APTSLTMHDMGLATIINPVNKDASGRPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAF 121
Query: 110 KTIATMSDRIG 120
+ + D++
Sbjct: 122 SELNRLKDKLA 132
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C ++V D + G+ C +CGLV+ + +EWR+F+N+ +++ RVG T+
Sbjct: 12 CPSCGDK-KMVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSND--ESNRTRVGAGTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLST+I N ++G+ LS+S L W +R S+ DR L A +
Sbjct: 69 TMHDMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSSADRNLRQALNEMDK 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB
2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPT 63
C C TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P
Sbjct: 9 VCPICG-STEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPM 65
Query: 64 NPLLADGGLSTVI 76
++ D GLST I
Sbjct: 66 TLMIHDKGLSTDI 78
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T +++D+ G+ VC +CG V+E ID+ EWR F E D R G P
Sbjct: 17 CPECGS-THLIWDYERGELVCGDCGAVIEDSFIDQGPEWRAFDAEQ-DEKRARTGAPLTF 74
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
L D GL+T I+ N S G+ + + +W R + +R L +A + +
Sbjct: 75 LSHDKGLATEISWSNKDSYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERNLSVALQELNN 134
Query: 115 MSDRIGQMRYIR 126
+S ++G + +R
Sbjct: 135 VSSKMGLPKDVR 146
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGR--LVSDAEHAETVCDDCGLVVDEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRIG 120
+ D++
Sbjct: 128 LKDKLA 133
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ + + + C CGL++E ID EWR F N + + RVG PT
Sbjct: 29 CPECESSS-LTRSPDESEISCEACGLIIEEEVIDRGPEWRAF-NAAERDSKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G LSS L +WQ R D R L A
Sbjct: 87 TMHDKGLTTTIDWKNKDAYGRSLSSDKRSQMNRLRKWQERIRTKDAGERNLQFALSETDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 147 MASALGVPRSVR 158
>gi|15897826|ref|NP_342431.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284175630|ref|ZP_06389599.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|384434375|ref|YP_005643733.1| Zinc finger TFIIB-type domain protein [Sulfolobus solfataricus
98/2]
gi|14195236|sp|P58110.1|TF2B2_SULSO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|13814125|gb|AAK41221.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-2)
[Sulfolobus solfataricus P2]
gi|261602529|gb|ACX92132.1| Zinc finger TFIIB-type domain protein [Sulfolobus solfataricus
98/2]
Length = 293
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK + +D G VC+ C V+E ++D +WR + N N+ RVG P+ P
Sbjct: 3 CPYCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLI 106
+ D G T+I A + + R QN R S D+ L+
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLV 103
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D+ + VC++CGLV+++ +DE EWR F ++ RVG P
Sbjct: 41 CPECGSRN-LEQDYERAELVCADCGLVVDADFVDEGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLPRTVR 170
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C +C S +T+C +CGLVL +ID EWR+F ++ + DP R G P
Sbjct: 4 NCVCPECDGR----LRTSGTETICEDCGLVLAEDAIDRGPEWRSFDDD--ETDPRRTGAP 57
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR 93
D GLST I +G E+ S GR
Sbjct: 58 LTRSRHDRGLSTEIGYGSGTPSEYRSRITGR 88
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 30 CPECGGR--LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVI 76
++ D GLST I
Sbjct: 87 MMHDQGLSTNI 97
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 58 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 114
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G+ LSS L W R D R L A I
Sbjct: 115 MMHDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 174
Query: 115 MSDRIG 120
M+ +G
Sbjct: 175 MASALG 180
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ K + G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MS 116
M+
Sbjct: 134 MA 135
>gi|148508281|gb|ABQ76065.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 380
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 85 CPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 141
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 142 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 201
Query: 115 MS 116
MS
Sbjct: 202 MS 203
>gi|257052770|ref|YP_003130603.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691533|gb|ACV11870.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 307
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC ++ +TVC +CGL+L ID EWR+F E +P R G P P
Sbjct: 23 CPDCGGRVRT----NSIETVCEDCGLILHEEPIDHGPEWRSF--EDDRTNPERTGAPLTP 76
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS----LGRWQ 95
D G+ST I + G LS S LGR++
Sbjct: 77 TRHDRGISTEIGRKTDGKGNDLSGSKRRQLGRFR 110
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV++ ID EWR F + S ++ RVG PT
Sbjct: 30 CPECGGRLRSDSEHA--ETVCQDCGLVVDEGEIDRGPEWRAF-DSSEKDEKSRVGAPTTN 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 87 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 147 MASALGLPENVR 158
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +H+ +TVC +CGLV+E ID EWR F + + ++ RVG PT
Sbjct: 31 CPECGGRLRSDSEHA--ETVCQDCGLVVEEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 87
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 88 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 148 MASALGLPENVR 159
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + +T+CS CGLV+ ID EWR F N N RVG PT
Sbjct: 80 CPECGGDT--VASADSPETICSACGLVITEDEIDRGPEWRGF-NAKERNQKSRVGAPTTA 136
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSSLGR-------WQNR---GSNPDRGLILAFKTIAT 114
L+ D GLST I N A G+ +S+ R W R + DR L A I
Sbjct: 137 LMHDKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 196
Query: 115 MS 116
MS
Sbjct: 197 MS 198
>gi|124505847|ref|XP_001351037.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
gi|23510680|emb|CAD49065.1| transcription initiation factor TFIIB, putative [Plasmodium
falciparum 3D7]
Length = 367
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ ++ D S G +C+ CG+V+ES + E EWR F N +S + D RVG +
Sbjct: 50 CPDCKEKGIIICDTSEGTQICNGCGMVVESKILSEEQEWRNFQNDGQSKNTDRNRVGEVS 109
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSD 117
+ L + ST K +S + ++ N+ D+ LI AF + + D
Sbjct: 110 DIWLENNLTSTTFIK---SSKKLQHLNMMTQINKN---DQTLISAFNILKLICD 157
>gi|378732425|gb|EHY58884.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDN-DPVRVG 60
T C DCK+ + + +A DT+C+ CG+VL I SEWRTF ++ G DP RVG
Sbjct: 27 THLICPDCKQVPPDLIEENA-DTICANCGMVLAERLISYESEWRTFNSDEGKGEDPNRVG 85
Query: 61 GPTNPLLADGGLSTVIA 77
N LL T+I
Sbjct: 86 EADNELLLTNNAGTMIG 102
>gi|146304496|ref|YP_001191812.1| transcription initiation factor IIB [Metallosphaera sedula DSM
5348]
gi|145702746|gb|ABP95888.1| Transcription initiation factor IIB (TFIIB) [Metallosphaera sedula
DSM 5348]
Length = 294
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPTN 64
C C+ TE+++D G+ VC+ G V+E + D EWR F ++GD N RVG
Sbjct: 3 CPICE-GTEIIYDAEHGNYVCARDGTVIEENVPDPGPEWREF--DAGDRNKKRRVGAGIT 59
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRIGQM 122
+ D G ST+I + + L R QN R ++ D+ L+ + + + ++G
Sbjct: 60 DRVHDKGFSTIIGG-GRVKDKMKAIRLQRLQNKSRVTSKDKKLVTYLSILNSEASKLGLP 118
Query: 123 RYIRRWK---IKSLVEAEIKTH---YWLLACTLL 150
Y++ IK L+E+ + Y L+A TL
Sbjct: 119 GYVKETAAGVIKKLIESGLARRIDTYALIAATLF 152
>gi|383625085|ref|ZP_09949491.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448697538|ref|ZP_21698578.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445781491|gb|EMA32347.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 327
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D S G+ VC ECGLV+++ ID EWR+F +E GD RVG P
Sbjct: 29 CPECSGR--LRHDVSHGEHVCVECGLVVDADEIDHGPEWRSFDDE-GDAR-TRVGAPITE 84
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I + A G LS+S L W R ++ D R L AF +
Sbjct: 85 RRHDKGLSTTIGWEDRDAYGNDLSASKRTRLRRLRTWNERFTSKDARERNLKHAFGELER 144
Query: 115 MSDRIG 120
M+ +G
Sbjct: 145 MASALG 150
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
+V+D G+ +C++ G V+ H ID EWR F E + R G P N L D GLST
Sbjct: 22 IVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRS-RAGAPINIALHDSGLST 80
Query: 75 VIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMR 123
VI ++G L + +W +R S DR ++ A + ++D++ R
Sbjct: 81 VIDWYDRDSAGRRLDLKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELERIADQLNLPR 140
Query: 124 YI 125
I
Sbjct: 141 VI 142
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVI 76
G P L D G+ST+I
Sbjct: 67 GEPVKLRLPDKGISTII 83
>gi|448356139|ref|ZP_21544886.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445633353|gb|ELY86541.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 364
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 70 CPECDGR--LMSDAEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 126
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 127 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 186
Query: 115 MSDRIG 120
M+ +G
Sbjct: 187 MASALG 192
>gi|374633735|ref|ZP_09706100.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
gi|373523523|gb|EHP68443.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Metallosphaera yellowstonensis
MK1]
Length = 295
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPTN 64
C C ++++D + +CS G V+ + +D EWR F +S D D R G P
Sbjct: 4 CPTCGVGDKIIYDQTRAQFICSIDGTVIAENVVDTGPEWREF--DSSDRDKKGRAGSPFT 61
Query: 65 PLLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLILAFKTIATMSDRIGQM 122
+ DGG++T+I + + L RWQ+ R + D+ ++ T+ + + ++
Sbjct: 62 NRVHDGGITTIIGRSARMKDKVKLMKLQRWQSKLRVAARDKKVVTYLSTLNSEAAKLNLP 121
Query: 123 RYIRR---WKIKSLVEAEIKTH---YWLLACTL 149
+++ IK L+E + Y L+A TL
Sbjct: 122 EHVKETAAMIIKKLIETGLARRVDMYALIAATL 154
>gi|399578474|ref|ZP_10772221.1| transcription initiation factor TFB [Halogranum salarium B-1]
gi|399236360|gb|EJN57297.1| transcription initiation factor TFB [Halogranum salarium B-1]
Length = 318
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F E D++ R G P
Sbjct: 24 CPECNGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSF--EHDDSNRERTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
D GLST I + G LS + R R K ++ +G++R I
Sbjct: 78 ARHDRGLSTTIGRSTDGKGSTLSGAKRRQLARMRREHSRSRFQSKAERNLAHGLGEVRRI 137
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC +CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECSGR--LVSDAEHAETVCEDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 164 MASALGLPENVR 175
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDPNTGENFCGACGFVITEKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L++S L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRIG 120
+ D++
Sbjct: 128 LKDKLA 133
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 55 CPECDGR--LMSDTEHAETVCADCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 111
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LSS L W R D R L A I
Sbjct: 112 MMHDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 171
Query: 115 MSDRIG 120
M+ +G
Sbjct: 172 MASALG 177
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
GD + E GLV+E +ID EWR F ++S + RVG PT P + D GL+T I +
Sbjct: 46 GDLIHEETGLVVEEDNIDHGPEWRAF-DQSERDQKSRVGAPTTPAMHDKGLTTEIGWRDK 104
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIG 120
A+G LS+ L WQ R D R L A I M +G
Sbjct: 105 DANGHSLSNEKRKQMNRLRTWQQRIRTNDAGERNLQFALSEIDRMVSALG 154
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C TE +D S G+ C+ CG VLE + +DE EWR F E + R G P
Sbjct: 7 CPNCG-STEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKR-ARTGPPMTN 64
Query: 66 LLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I N +G + + L WQ R +R L A +
Sbjct: 65 MIHDKGLSTDIDWRDKDIHGNPITGVYRNKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 115 MSDRIG 120
M+ ++G
Sbjct: 125 MAVQMG 130
>gi|448362505|ref|ZP_21551111.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647985|gb|ELZ00949.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 341
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 163
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 164 MASALGLPENVR 175
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +++ D G+ C CGLV++ + +D EWR F NE D RVG P
Sbjct: 29 CPECGSE-QIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKR-TRVGAPMTY 86
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 87 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 146
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 147 DSSRLGLPRSVR 158
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++C LV+E ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS L W R ++ +R L A I
Sbjct: 104 MMHDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNERFRTRNSKERNLKQALGEIDR 163
Query: 115 MSDRIG 120
M+ +G
Sbjct: 164 MASALG 169
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E G+++E ID EWR F N + + RVG PT + D GL+T I K
Sbjct: 38 GELIHEETGMIIEDEQIDPGPEWRAF-NHNERQEKSRVGAPTTKTMHDKGLTTTIDWKDK 96
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 97 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 152
>gi|448364802|ref|ZP_21553379.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445657641|gb|ELZ10466.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 339
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++CGLV++ ID EWR F + + ++ RVG PT
Sbjct: 45 CPECGGR--LVSDAEHAETVCTDCGLVVQEGEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 101
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIAT 114
++ D GLST I + A G LS+ L W R D R L A I
Sbjct: 102 MMHDQGLSTNIGWQDKDAYGRSLSNRQRQKMQRLRTWNERFRTRDSKERNLKQALGEIDR 161
Query: 115 MSDRIGQMRYIR 126
M+ +G +R
Sbjct: 162 MASALGLPENVR 173
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGKGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRIG 120
+ D++
Sbjct: 128 LKDKLA 133
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLST
Sbjct: 16 VYDPERGEVICANCGFVIQENMIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMRYI 125
I G L +WQ+R +R L A + + R+ +++
Sbjct: 75 IGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHV 129
>gi|448425111|ref|ZP_21582740.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
gi|445681371|gb|ELZ33805.1| Zinc finger TFIIB-type domain protein [Halorubrum terrestre JCM
10247]
Length = 279
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG 84
VC++CGLV+E+ ++D EWR+F +E P R G P D GLST I A+G
Sbjct: 9 VCTDCGLVVETDTLDRGPEWRSFDDE---ETPARTGAPLTVARHDRGLSTEIGHKTDATG 65
Query: 85 EFLSS-------SLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
LS L R Q RG S DR L + ++ +G +R
Sbjct: 66 TELSGRKRAQLFRLRREQARGRFQSKADRNLAHGLSEVRRIASGLGLAESLR 117
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C T V+ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 46 VCPICG-STNVIKDYERAEIVCENCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 103
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLSTVI N S G+ +S++ L +WQ R +R L A +
Sbjct: 104 YTIHDKGLSTVIDWRNKDSYGKDISANKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 163
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 164 RIASKLGLPRNVR 176
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTTHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSS------SLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMR 123
T I + A+G L+ L +WQ R ++ +R L A + +SD +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 YIR 126
Y++
Sbjct: 151 YVK 153
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F +E R GGP + D G +
Sbjct: 32 KIVYDTAHGEYVCQDTGEVIEEKVIDERPEWRAFTSEERGRR-ARTGGPVTATVHDMGFA 90
Query: 74 TVIAKPN-GASGEFLSS------SLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMR 123
T I + A+G L+ L +WQ R ++ +R L A + +SD +
Sbjct: 91 TTIDYTDRDAAGRRLTEKKHELVKLRKWQARTRIITSVERNLAQAMNELDRLSDILNLPS 150
Query: 124 YIR 126
Y++
Sbjct: 151 YVK 153
>gi|66359636|ref|XP_626996.1| transcription initiation factor TFIIB Sua7p; ZnR+2cyclins
[Cryptosporidium parvum Iowa II]
gi|46228446|gb|EAK89316.1| transcription initiation factor TFIIB Sua7p; ZnR+2cyclins
[Cryptosporidium parvum Iowa II]
Length = 456
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
FC C ++ VV+D +G +C+ CG+V+E I+E EWR+F+N+ D N R+G
Sbjct: 151 FCKRCGAGNSIVVYDSKSGSEICTRCGVVVEDRVINEEQEWRSFSNDGNDGNSKSRIGSV 210
Query: 63 TNPLLADG 70
+ L DG
Sbjct: 211 NDVWLDDG 218
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTGENFCGKCGFVITDKVDESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRIG 120
+ D++
Sbjct: 128 LKDKLA 133
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C DC + +TVC +CGLVL + ID EWR F+ + D R G
Sbjct: 19 TNNACPDCGGDVST----NTAETVCDDCGLVLSEYQIDHGPEWRLFSAD--DEGKKRTGA 72
Query: 62 PTNPLLADGGLSTVIAKPNGASGEFLS-------SSLGRWQNRG 98
P P D GLS+ I A+G LS + + R Q+RG
Sbjct: 73 PLTPTRHDRGLSSEIGYKRDANGRTLSGKKRQQVARMRREQSRG 116
>gi|399579012|ref|ZP_10772756.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236038|gb|EJN56978.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++V D G++ C ECGLV++ +D EW+ + N ++ RVG PT
Sbjct: 26 CPECDG--KIVQDSEHGESSCEECGLVVDEMQVDRGPEWQAY-NADDRSEKSRVGAPTTQ 82
Query: 66 LLADGGLSTVIA 77
L+ D GLST I
Sbjct: 83 LMHDKGLSTTIG 94
>gi|313768145|ref|YP_004061576.1| hypothetical protein BpV1_146 [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599752|gb|ADQ91773.1| hypothetical protein BpV1_146 [Bathycoccus sp. RCC1105 virus BpV1]
Length = 311
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 20/159 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT- 63
C +CK T+V G CSECGLV +S IDE+ EW + ++ G NDP R GGP
Sbjct: 30 CKECK-GTKVF--SKEGMPTCSECGLV-DSMFIDESPEWTSGISDDGKINDPSRCGGPNA 85
Query: 64 NPLLADG--GLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTI----ATMSD 117
NP L G T+IA + ++ E + + ++ DR L A+K+I + D
Sbjct: 86 NPELFSQAWGKGTIIATQHTSTYENKRMAKINFHQSMNHKDRALFHAYKSIDEACPNLPD 145
Query: 118 RI---GQMRYIRRWKIKSL----VEAEIKTHYWLLACTL 149
+ +M Y R++ ++ L V + IK + L AC L
Sbjct: 146 SVLKDAKMMY-RKFNLEKLTRGAVRSGIKGNCVLYACRL 183
>gi|807035|gb|AAB32639.1| transcription factor IIB, TFIIB=sua7-3 variant [Saccharomyces
cerevisiae, Peptide Partial Mutant, 68 aa]
Length = 68
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT 63
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ + +DP VG +
Sbjct: 5 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSCVGEAS 64
Query: 64 NPLL 67
NPLL
Sbjct: 65 NPLL 68
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K++ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNS-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGN-KARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDR-------IGQMRYIRRWKI-KSLV 134
+ D+ I + YI R I K LV
Sbjct: 129 LKDKLSLSDAVIEKAAYIYRKAIEKKLV 156
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V+D G+ +C+ CG V++ + ID EWR F + S R G P + LL D GLST
Sbjct: 16 VYDPERGEIICANCGFVIQENIIDMGPEWRAF-DASQREKRSRTGAPESILLHDKGLSTD 74
Query: 76 IAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIGQMRYI 125
I G L +WQ+R +R L A + + R+ +++
Sbjct: 75 IGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLPKHV 129
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G LSS L +WQ R D R L A + M+ +G R +R
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVR 164
>gi|448568881|ref|ZP_21638293.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445725031|gb|ELZ76656.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 311
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C +V+ D AG+ C CGL+++ H ID EWR+F E + RVG P
Sbjct: 24 NASCPECGG--QVITD--AGERRCESCGLIIDGHGIDRGPEWRSFERE----ERKRVGAP 75
Query: 63 TNPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 76 RTPTRHDHGLATEIGRHVDANG 97
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C + +++D S + VCS CG VL +D EWR F E G + RVG P
Sbjct: 10 CPICGSES-LIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAF--EPGQREKRSRVGAPET 66
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+L D GLST I + G +S S L WQ R DR L A +
Sbjct: 67 VMLHDKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMWQRRMRISDAIDRNLAFALSELD 126
Query: 114 TMSDRIGQMRYIR 126
M ++G R IR
Sbjct: 127 RMGSQLGLPRNIR 139
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C +CGLVL +ID EWR+F + D DP R G P D GLST I +G+
Sbjct: 23 ETICEDCGLVLAEDAIDRGPEWRSFDD---DTDPRRTGAPLTRSRHDRGLSTKIGYGSGS 79
Query: 83 SGEFLSSSLGR 93
+ S GR
Sbjct: 80 DSTYSSRVTGR 90
>gi|342319859|gb|EGU11804.1| Transcription initiation factor IIB [Rhodotorula glutinis ATCC
204091]
Length = 417
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 71/179 (39%), Gaps = 62/179 (34%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSE---------------------- 43
C DC +V+ + S+GD VC CGLVL +D SE
Sbjct: 32 CPDCGDAGQVIEEFSSGDLVCGNCGLVLGDKVVDTRSECERALLFSSALQLDSPSMPSCC 91
Query: 44 -----------------------------W--RTFANESGDNDPVRVGGPTNPLL-ADGG 71
W RTFA+ GD DP RVGGP +PLL +
Sbjct: 92 GRRRRRSACTGGQAGVSGGLKDLSWRFCHWERRTFADSDGD-DPSRVGGPADPLLDSTDQ 150
Query: 72 LSTVIAKPNGASG-----EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
LSTVI+ + +G + +S + + GS R L AF+ IATM + I + I
Sbjct: 151 LSTVISFKDNNTGVARALQMAASRVAKDAQGGSG--RDLQGAFREIATMCEAISLPKAI 207
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 50 GEIIHEPTGIVVEEEQIDRGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 108
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G LSS L +WQ R D R L A + M+ +G R +R
Sbjct: 109 DAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEVDRMASALGVPRSVR 164
>gi|448562225|ref|ZP_21635264.1| transcription initiation factor iib (tfiib) [Haloferax prahovense
DSM 18310]
gi|445719429|gb|ELZ71109.1| transcription initiation factor iib (tfiib) [Haloferax prahovense
DSM 18310]
Length = 317
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 25 VCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGAS 83
+C +CGLVL+ ID EWR F N S RVG P + D GL+T I K A
Sbjct: 1 MCDDCGLVLDERQIDRGPEWRAF-NHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAY 59
Query: 84 GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
G LSS L +WQ R D R L A I M+ +G R +R
Sbjct: 60 GRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 112
>gi|408404447|ref|YP_006862430.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365043|gb|AFU58773.1| putative transcription initiation factor IIB [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 313
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C+ C + +VFD + VCS CG+V++ + EWR+++ E ++ R G P++
Sbjct: 21 CALCNSKS-IVFDSETSEAVCSSCGMVIKDNIESMGPEWRSYSGEDIESKS-RTGMPSSL 78
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGSNP---DRGLILAFKTIAT 114
D GLST I+ N A+G +S+ + RW SN R L AF ++T
Sbjct: 79 AFHDMGLSTFISYSNVDANGVAISAEQRSKVQRMRRWNKISSNNRSYHRNLKNAFAILST 138
Query: 115 MSDRIG 120
+ D++
Sbjct: 139 IKDKLS 144
>gi|321260170|ref|XP_003194805.1| transcription initiation factor IIB [Cryptococcus gattii WM276]
gi|317461277|gb|ADV23018.1| Transcription initiation factor IIB, putative [Cryptococcus gattii
WM276]
Length = 438
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C +C+ +V +++ GD +L +D SEWRTFA + +DP RVG
Sbjct: 76 ICPNCRTDPPNIVEEYAKGD--------LLGDRIVDTRSEWRTFAGDENGDDPSRVGDAG 127
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMS---DRIG 120
NPLL L T+I+ +G +G ++ L R Q R + G I ++A +S RIG
Sbjct: 128 NPLLGSNHLDTMISHKDGRTG--IARDLNRAQARANTLSNG-IYGKSSVAQLSAVFSRIG 184
Query: 121 Q 121
+
Sbjct: 185 E 185
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GL+LE ID EWR F N+S RVG P + D GL+T
Sbjct: 80 VVRTAEGELIHEPTGLILEDDQIDRGPEWRAF-NQSERQSKSRVGAPITQTMHDKGLTTQ 138
Query: 76 IA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRY 124
I + A G LSS L +WQ R D R L A I MS +G R
Sbjct: 139 IDWRSKDAYGRSLSSEKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDRMSSALGVPRS 198
Query: 125 IR 126
+R
Sbjct: 199 VR 200
>gi|67607388|ref|XP_666811.1| transcription initiation factor TFIIB [Cryptosporidium hominis
TU502]
gi|54657872|gb|EAL36580.1| transcription initiation factor TFIIB [Cryptosporidium hominis]
Length = 269
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 5 FCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGP 62
FC C ++ VV+D +G +C+ CG+V+E I+E EWR+F+N+ D N R+G
Sbjct: 141 FCKRCGAGNSIVVYDSKSGSEICTRCGVVVEDRVINEEQEWRSFSNDGNDGNSKSRIGSV 200
Query: 63 TNPLLADG 70
+ L DG
Sbjct: 201 NDVWLDDG 208
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K+ ++ D G+ C +CG V+ S + EWR+F + N R G PT+
Sbjct: 11 CPRCAKNA-LLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGN-KARAGAPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS---NPDRGLILAFKTIAT 114
+ D GLST+I N ASG+ L++S L W +R + DR L A +
Sbjct: 69 TMHDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNR 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C V+ D+ + VC++CG VL+ + D EWR F +E RVG P
Sbjct: 39 ICPICGSKN-VIKDYERAEIVCADCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 96
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 97 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 156
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 157 RIASKLGLPRNVR 169
>gi|118577054|ref|YP_876797.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195575|gb|ABK78493.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K + ++ D+ G+ CS+CG V + EWR+F+ + G D R G PT+
Sbjct: 11 CQRCGKGS-MLTDNDTGEMFCSKCGFVATERAEQAGPEWRSFSKDDG-QDRTRTGTPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I N A+G L++S L W +R P DR AF +
Sbjct: 69 AMHDMGLATIINPANKDATGRPLTASMKSTIERLRTWDSRSQVHEPVDRNYRQAFSELDR 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|448388182|ref|ZP_21565122.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445670833|gb|ELZ23430.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 283
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C ECGLV +ID EWR+F E + D R G P D GLST I +G+
Sbjct: 7 ETICEECGLVSSEDAIDRGPEWRSFDGE--ETDRRRTGAPLTRSRHDRGLSTKIGYGSGS 64
Query: 83 SGEFLS----------SSLGRWQNRG---SNPDRGLILAFKTI 112
SG++ S + L R NR S DR + F I
Sbjct: 65 SGKYNSRLTGRKRRQIARLRREHNRARISSKADRNQVYGFTEI 107
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 16 VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTV 75
V + G+ + GLVLE ID EWR F + S RVG PT + D GL+T
Sbjct: 45 VVKTADGELIHEPTGLVLEDEHIDRGPEWRAFTH-SERQSKSRVGAPTTQTMHDKGLTTQ 103
Query: 76 IA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRY 124
I K A G+ +SS L +WQ R D R L A I M+ +G R
Sbjct: 104 IDWKDKDAYGQSISSDKRSQMNRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRS 163
Query: 125 IR 126
+R
Sbjct: 164 VR 165
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
++ D+ + VC +CG VL+ + D EWR F +E RVG P + D GLST
Sbjct: 46 IIKDYEKAEIVCEDCGCVLQDNLFDVGPEWRAFDHEQRVKRS-RVGAPMTYTIHDKGLST 104
Query: 75 VIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMR 123
VI N S G+ +S+ L +WQ R D R L A + ++ ++G R
Sbjct: 105 VIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLPR 164
Query: 124 YIR 126
+R
Sbjct: 165 NVR 167
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C+ T +V D + VC +CGLVL ID EWR F N ++ RVG P
Sbjct: 24 LCPECETDT-IVHDPDRSERVCEQCGLVLTEDPIDYGPEWRAF-NAQEHDELSRVGAPLT 81
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIA 113
+ D GL+T I + A+G +S+ L WQ R + +R L A I
Sbjct: 82 QSMHDRGLTTTIDWRNKDANGRSMSAEKHGQIHRLRVWQERIRTKNAGERNLKYALSEID 141
Query: 114 TMSDRIG 120
M +G
Sbjct: 142 RMVSALG 148
>gi|448444597|ref|ZP_21589887.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445686010|gb|ELZ38351.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 324
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 67/163 (41%), Gaps = 25/163 (15%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 45 CPECGGRTRV----DAAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 98
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
D GLST I + G NR I+T DR
Sbjct: 99 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQ------------ISTKRDRNKVYA 146
Query: 124 YIRRWKIKSLVEA-EIKTHYWLLACTLLVDKKTSHALLRKSAL 165
Y +I+ L A E+ ACTL D +LLR +L
Sbjct: 147 YT---EIRRLTGALELPDSVRDTACTLF-DSAQDESLLRGRSL 185
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C + T +V D + G+ C +CG V+ + EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDANTGENFCGKCGFVITDKVEESGPEWRSFSNE-GENKS-RAGVPTSL 67
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+TVI N A+G+ L+++ L W +R P DR AF +
Sbjct: 68 AMHDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 127
Query: 115 MSDRIG 120
+ D++
Sbjct: 128 LKDKLA 133
>gi|313124866|ref|YP_004035130.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448287275|ref|ZP_21478488.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312291231|gb|ADQ65691.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445572483|gb|ELY27021.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 296
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 19 HSAG-DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA 77
H+ G +TVC +CGLV+ ++ID EWR+FA++ D +P R G P D GLST I
Sbjct: 24 HAEGQETVCGDCGLVVSEYTIDHGPEWRSFADD--DRNPKRTGAPLTQSRHDRGLSTEIG 81
Query: 78 KPNGASG--EFLSSSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
+ G + + + NR + +R + AF I ++ + IR
Sbjct: 82 RSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTEIRRLTSALSLPERIR 135
>gi|71030250|ref|XP_764767.1| transcription initiation factor TFIIB [Theileria parva strain
Muguga]
gi|68351723|gb|EAN32484.1| transcription initiation factor TFIIB, putative [Theileria parva]
Length = 342
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
CS CK + VV DH G+ +C CG VLE+ I E EWR F ES + RV G
Sbjct: 15 CSTCKDSSTVVVDHVEGNQLCLSCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRV-GE 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRI 119
N + DG ST G S + + QN +N DR L +F + T++D +
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 G 120
Sbjct: 126 N 126
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C + D G+ VC++CGLV + ID EWR+F E+ D RVG P
Sbjct: 46 CPECAGR--IRPDSDRGERVCADCGLVSDGDEIDYGPEWRSFEGETSDRS--RVGAPITE 101
Query: 66 LLADGGLSTVI------AKPNGASGEFLS--SSLGRWQNRGSNPD---RGLILAFKTIAT 114
D GLST I A N SGE + + L W R ++ D R L A +
Sbjct: 102 RRHDKGLSTTIGWENRDAYGNTISGEKRAQLNRLRTWNERFTSKDARERNLKQALGELER 161
Query: 115 MSDRIG 120
M+ +G
Sbjct: 162 MASALG 167
>gi|448304757|ref|ZP_21494693.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590138|gb|ELY44359.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 356
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
D C +C + +V D G+TVC +CGLV+E S+D EWR F + + N+ RVG
Sbjct: 26 QNDLACPECAGN--LVVDDEHGETVCEDCGLVVEEDSVDRGPEWRAF-DAAEKNEKSRVG 82
Query: 61 GPTNPLLAD 69
PT + D
Sbjct: 83 APTTNTMHD 91
>gi|448476239|ref|ZP_21603403.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815788|gb|EMA65707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 334
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+++ ID EWR+FA++ D +P R G P
Sbjct: 55 CPECGGRTRV----DSSERVCTDCGLVVDADRIDHGPEWRSFADD--DTNPKRTGAPLTR 108
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 109 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRARISTKRDRNKVYAYTEIRRLTGALG 168
Query: 121 QMRYIR 126
+R
Sbjct: 169 LPNSVR 174
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ ID EWRTF +++ R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVIDEQRIDHGPEWRTF----DEDECKRTGAPLTAARHDRGLSTEIGRR 89
Query: 80 NGASGEFLSSS-------LGRWQNRG 98
A+G LSS L R Q+RG
Sbjct: 90 TDANGNELSSQKQRRLWRLRREQSRG 115
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 16/127 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C + T +V D + + C +CG V+ + +DE+ EWR+F+NE G+N R G PT+
Sbjct: 11 CPRCGQGT-LVTDATTAENFCGKCGFVI-TEKVDESGPEWRSFSNE-GENKS-RAGVPTS 66
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+TVI N A+G+ L+S+ L W +R P DR AF +
Sbjct: 67 LAMHDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 126
Query: 114 TMSDRIG 120
+ D++
Sbjct: 127 RLKDKLA 133
>gi|330926698|ref|XP_003301569.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
gi|311323527|gb|EFQ90325.1| hypothetical protein PTT_13105 [Pyrenophora teres f. teres 0-1]
Length = 357
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
C DCK++ +V + SAGDT+C CG VL +ID G++DP R+G
Sbjct: 37 ICPDCKENPPNLVEEFSAGDTICGSCGRVLAERTID---------THQGNDDPSRIGDAA 87
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD---RGLILAFKTIATMSD 117
NPLL L T I +G L R N+ SN D + L A+ I + D
Sbjct: 88 NPLLHGSQLQTEIGFGDGG---MRVRDLSRAHNK-SNHDKVNKALQAAYGQITALCD 140
>gi|399217725|emb|CCF74612.1| unnamed protein product [Babesia microti strain RI]
Length = 333
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVG 60
C DC V+ DH G+ +C+ CG VLESH I + EWR+F ES +D RVG
Sbjct: 22 CPDCGPMGIVLLDHCEGNQICNNCGRVLESHMISDEQEWRSFNTESSGGAGSDRNRVG 79
>gi|222478511|ref|YP_002564748.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451413|gb|ACM55678.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 330
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DAAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASG 84
D GLST I + G
Sbjct: 105 SRHDRGLSTEIGRSTKVKG 123
>gi|312599295|gb|ADQ91318.1| hypothetical protein BpV2_151 [Bathycoccus sp. RCC1105 virus BpV2]
Length = 311
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGD-NDPVRVGGPT-NPLLADG--GLSTVIA 77
G CSECGLV +S IDE+ EW + ++ G NDP R GGP NP L G T+IA
Sbjct: 43 GMPTCSECGLV-DSMFIDESPEWTSGISDDGKINDPSRCGGPNANPELFSQAWGKGTIIA 101
Query: 78 KPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI-------GQMRYIRRWKI 130
+ ++ E + + ++ DR L A+K+I + +M Y R++ +
Sbjct: 102 TQHASTYENKRMAKINFHQSMNHKDRALFHAYKSIDEACPNLPESVLKDAKMMY-RKFNL 160
Query: 131 KSL----VEAEIKTHYWLLACTL 149
+ L V + IK + L AC L
Sbjct: 161 EKLTRGAVRSGIKGNCVLYACRL 183
>gi|156094983|ref|XP_001613527.1| transcription initiation factor TFIIB [Plasmodium vivax Sal-1]
gi|148802401|gb|EDL43800.1| transcription initiation factor TFIIB, putative [Plasmodium vivax]
Length = 366
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGPT 63
C DCK+ V+ D+S G +C+ CGLVLES + E EWR F + + ND RVG +
Sbjct: 48 CPDCKEKGIVICDNSEGTQICNGCGLVLESRILSEEQEWRNFHSDGQMKSNDRNRVGEVS 107
Query: 64 NPLLADGGLSTVIAK 78
+ + ST K
Sbjct: 108 DIWFENNLTSTTFIK 122
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K ++V D + G+ C+ CG V+ D +EWR+F+ + + R G T+
Sbjct: 38 CPSCGKQ-KIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGD--ETSRSRSGAGTSL 94
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRG---SNPDRGLILAFKTIAT 114
+ D GLSTVI N +G+ LS+S L W +R S+ DR L A +
Sbjct: 95 AMHDMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDK 154
Query: 115 MSDR-------IGQMRYIRRWKIKSLVEAEIKTHYWLLAC 147
M D+ I + YI R ++ + H + AC
Sbjct: 155 MKDKLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAAC 194
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C D + G+ +C ECG V++ IDE++EWR F E + R G P
Sbjct: 58 CPECGSQR-FEEDSAKGELICIECGFVMDEDRIDESAEWRAFNAEEKEKK-ARAGQPLTY 115
Query: 66 LLADGGLSTVIAKPNGASGEFLSSS---------LGRWQNR-GSNPDRGLILAFKTIATM 115
D G+ST I K SGE S L +W R + DR L A + +M
Sbjct: 116 TKHDMGVSTEIGK---GSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSM 172
>gi|448620718|ref|ZP_21667965.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445756679|gb|EMA08045.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 312
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
DA C +C +V+ D AG+ C CGL+++ H ID EW++F ++ RVG P
Sbjct: 21 DASCPECGG--QVITD--AGERRCQSCGLIIDGHGIDRGPEWQSFER----DERKRVGAP 72
Query: 63 TNPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 73 RTPTRHDHGLATEIGRHVDANG 94
>gi|354609997|ref|ZP_09027953.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353194817|gb|EHB60319.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 285
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C E V + VC++CGLV+ ID EWR+F ++ D +P R G P
Sbjct: 5 ANCPEC----EGVVRKQETERVCTDCGLVVCEDRIDRGPEWRSFDDD--DTNPERTGAPL 58
Query: 64 NPLLADGGLSTVIAKPNGASGEFLS--SSLGRWQNR---GSNPDRGLILAFKTIATMSDR 118
D GLST I + G + L R R GS DR + F I +
Sbjct: 59 TRSRHDRGLSTEIGRSTRLKGRKRRKFARLRRQHKRASIGSKADRNQVYGFTEIRRIVGA 118
Query: 119 IGQMRYIR 126
+G R +R
Sbjct: 119 LGLPRSVR 126
>gi|284163612|ref|YP_003401891.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284013267|gb|ADB59218.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 299
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C ECGLV +ID EWR+F E + D R G P D GLST I +G+
Sbjct: 23 ETICEECGLVSSEDAIDRGPEWRSFDGE--ETDQRRTGAPLTRSRHDRGLSTKIGYGSGS 80
Query: 83 SGEFLS----------SSLGRWQNRG---SNPDRGLILAFKTI 112
SG++ + + L R NR S DR + F I
Sbjct: 81 SGKYSARLTGRKRRQIARLRREHNRARISSKADRNQVYGFTEI 123
>gi|433424511|ref|ZP_20406506.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198064|gb|ELK54389.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 308
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V+ D AG+ C CGL+++ HSID EWR+F ++ RVG P
Sbjct: 22 ASCPECGG--QVITD--AGERRCDSCGLIIDGHSIDRGPEWRSFER----DERKRVGMPR 73
Query: 64 NPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 74 TPTRHDHGLATEIGRHVDANG 94
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETS-EWRTFANESGDNDPVRVGGPTN 64
C C K +V D+S+G+ C CG V+ + I+ET EWR F+ E + D R G PT+
Sbjct: 12 CPRCGKGP-MVTDNSSGEMFCGNCGFVV-TERIEETGPEWRAFSKEEHE-DRSRAGIPTS 68
Query: 65 PLLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIA 113
+ D GL+T+I + ASG+ LS+S L W +R P DR AF +
Sbjct: 69 LAMHDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD 128
Query: 114 TMSDRIG 120
+ D++
Sbjct: 129 RLKDKLA 135
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D +TVC++C LV+E ID EWR F + + ++ RVG PT
Sbjct: 47 CPECGGR--LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAF-DAAEKDEKSRVGAPTTN 103
Query: 66 LLADGGLSTVI 76
++ D GLST I
Sbjct: 104 MMHDQGLSTNI 114
>gi|448621485|ref|ZP_21668382.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445755510|gb|EMA06896.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 311
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A CS+C +V+ D AG+ C CG +++ H ID EWR+F ++ RVG P
Sbjct: 24 NASCSECGG--QVITD--AGERRCESCGFIIDGHGIDRGPEWRSFER----DECKRVGAP 75
Query: 63 TNPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 76 RTPTRHDHGLATEIGRHVDANG 97
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C H +A +TVC +CGLV+ ID EWR+F ++ G+ + R G P
Sbjct: 24 CPECSGHVAT----NAVETVCEDCGLVIADQQIDHGPEWRSFEDDDGNCE--RTGAPLTA 77
Query: 66 LLADGGLSTVIAKPNGASGEFLSS-------------SLGRWQNRGSNPDRGLILAFKTI 112
D GLST I A LSS S GR+Q S +R L +
Sbjct: 78 ARHDRGLSTEIGCRTDARNNALSSQKRRQLARMRREHSRGRFQ---SKAERNLAHGLGEV 134
Query: 113 ATMSDRIGQMRYIR 126
++ +G IR
Sbjct: 135 RRITSALGLADSIR 148
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D G+ C+ECGLVL++ +D EWR +E D + RVG P
Sbjct: 35 ATCPECSGR--IVHDAEHGEHACAECGLVLDADELDYGPEWRAGDDEDAD-ERRRVGAPL 91
Query: 64 NPLLADGGLSTVIA-KPNGASGEFLS----SSLGR---WQNR---GSNPDRGLILAFKTI 112
D GLST I + A G LS S L R W R + +R L AF +
Sbjct: 92 TERRHDKGLSTTIGWRNQDAYGNELSARKRSQLRRLRTWNERFTAKTAQERNLKHAFGEL 151
Query: 113 ATMS 116
M+
Sbjct: 152 ERMA 155
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T C +C V D T C +CGLV++ ID EWR F N + N+ RVG
Sbjct: 33 TTTTCPECDGRLIVRNDQ----THCEDCGLVVDEDRIDHGPEWRAF-NATEKNEKSRVGA 87
Query: 62 PTNPLLADGGLSTVI 76
PT +L D GLST I
Sbjct: 88 PTTNMLHDRGLSTTI 102
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 48 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 106
Query: 81 GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 107 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 162
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + G+V+E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 55 GELIHEPTGIVVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTQTMHDKGLTTTIDWKDK 113
Query: 81 GASGEFLSS-------SLGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 114 DAYGRSISSRKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 169
>gi|448586651|ref|ZP_21648524.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724636|gb|ELZ76267.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 308
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C +V+ D AG+ C CGL+++ H ID EWR+F ++ RVG P
Sbjct: 21 NASCPECGG--QVITD--AGERRCESCGLIIDDHGIDHGPEWRSFER----DERKRVGAP 72
Query: 63 TNPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 73 RTPTRHDHGLATEIGRHVDANG 94
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 42 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 100
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
A G +SS L +WQ R D R L A I M+ +G R +R
Sbjct: 101 DAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMASALGVPRSVR 156
>gi|84995592|ref|XP_952518.1| transcription initiation factor tfiib [Theileria annulata strain
Ankara]
gi|65302679|emb|CAI74786.1| transcription initiation factor tfiib, putative [Theileria
annulata]
Length = 341
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
C+ CK + VV DH G+ +C CG VLE+ I E EWR F ES + RV G
Sbjct: 15 CTTCKDSSTVVVDHVEGNQLCLNCGRVLENVLISEQQEWRNFNTESLGQAGAEKSRV-GE 73
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSDRI 119
N + DG ST G S + + QN +N DR L +F + T++D +
Sbjct: 74 LNDVWLDGTSSTTFI---GGSKK-----MQHLQNLMTNYDSSDRALKTSFTLLRTIADSL 125
Query: 120 G 120
Sbjct: 126 N 126
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C + ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKS-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C+ D + G+ VC ECG +++ ID+++E+R F NE+ R G P
Sbjct: 61 CPECESQR-FEEDSAQGELVCVECGTIIDEDRIDDSAEYRAF-NEAEREKKARAGQPLTY 118
Query: 66 LLADGGLSTVIAKPNG----ASGEFLSS--SLGRWQNR-GSNPDRGLILAFKTIATM 115
D G+ST I K +G SGE + L +W R + DR L A + +M
Sbjct: 119 TKHDMGVSTEIGKGSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSM 175
>gi|448564338|ref|ZP_21636019.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445716889|gb|ELZ68619.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 312
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGA 82
+T+C ECGL+++ + ID EWR E + R G P P D GLS+ I A
Sbjct: 36 ETLCEECGLIIDEYQIDHGPEWRI--TERDEESRRRTGAPLTPTRHDRGLSSEIGYKRDA 93
Query: 83 SGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
SG LS + + R Q+RG S +R L L + ++ +G IR
Sbjct: 94 SGRTLSGKKRQQVARMRREQSRGRFQSKAERNLALGLGEVRRIAGALGFSDSIR 147
>gi|403221784|dbj|BAM39916.1| transcription initiation factor TFIIb [Theileria orientalis strain
Shintoku]
Length = 339
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES---GDNDPVRVGGP 62
CS CK+ + VV DH G+ +C CG VLE I E EWR F ES + RVG
Sbjct: 15 CSACKEASVVVVDHVEGNQLCLNCGRVLEDVLISEQQEWRNFNTESLGQAGAEKSRVGEV 74
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSN---PDRGLILAFKTIATMSD 117
+ L +T I S + + QN SN DR L +F + T+ D
Sbjct: 75 NDVWLDATSSTTFIGG---------SKKMQQLQNLMSNFESSDRSLKTSFGILRTICD 123
>gi|448466721|ref|ZP_21599226.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445813581|gb|EMA63558.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 336
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V A + VC +CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DAAERVCDDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTDIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGAMG 170
Query: 121 QMRYIR 126
+R
Sbjct: 171 LPDSVR 176
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C + ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKS-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++V+D + G+ VC + G V+E IDE EWR F E R GGP + D G +
Sbjct: 28 KIVYDAAHGEYVCQDTGEVIEEKVIDERPEWRAFTPEERGRR-ARTGGPVTAAVHDMGFA 86
Query: 74 TVIAKPN-GASGEFLSS------SLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMR 123
T I + A+G L+ L +WQ R ++ +R L A + ++D +
Sbjct: 87 TSIDYTDRDAAGRRLTEKKHELVKLRKWQARTRILTSVERNLAQAMNELDRLADVLNLPS 146
Query: 124 YIRRWKIKSLVEA 136
Y++ + EA
Sbjct: 147 YVKEEAARIYREA 159
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C + ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKS-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGG 71
H ++V+D G+ VC + G V+E IDE EWR F E R GGP + D G
Sbjct: 15 HDKLVYDSEHGEYVCLDTGEVVEEKIIDERPEWRAFTPEERGRR-ARTGGPLTTTVHDMG 73
Query: 72 LSTVIAKPN-GASGEFLSS------SLGRWQNRG---SNPDRGLILAFKTIATMSD 117
+T I N A+G L L +WQ R ++ DR L A + + D
Sbjct: 74 FATAIDYSNKDAAGRKLMGKRQELVKLRKWQARTRILTSMDRNLAQAMNELERLGD 129
>gi|448580812|ref|ZP_21644934.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445735341|gb|ELZ86891.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 311
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+A C +C +V+ D AG+ C CGL+++ H ID EWR+F + RVG P
Sbjct: 24 NASCPECGG--QVITD--AGEQRCESCGLIIDGHGIDRGPEWRSFER----TERKRVGAP 75
Query: 63 TNPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 76 RTPTRHDHGLATEIGRHVDANG 97
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V D T C +CGLV++ ID EWR F N + N+ RVG PT
Sbjct: 35 CPECDGRLIVRDDQ----THCEDCGLVVDEDRIDHGPEWRAF-NATEKNEKSRVGAPTTN 89
Query: 66 LLADGGLSTVI 76
+L D GLST I
Sbjct: 90 MLHDRGLSTTI 100
>gi|307594882|ref|YP_003901199.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550083|gb|ADN50148.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 311
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPV-RVGGPT 63
C +C+ T++VFD G+ VC CGLV+E H +D EWR F SGD + P
Sbjct: 14 VCPNCES-TDIVFDPERGELVCRHCGLVIEEHVMDLGPEWRAF---SGDEVLIHERAKPI 69
Query: 64 NPLLADGGL 72
+P L GL
Sbjct: 70 SPALPGQGL 78
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++ +D G+ VCS CG V++ + +DE EWR F + R G P ++ D GLS
Sbjct: 14 KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMTLMIHDKGLS 72
Query: 74 TVI------AKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
T I N +G + + L WQ R +R L A + M+ QM
Sbjct: 73 TDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDRMA---AQM 129
Query: 123 RYIRRWK 129
R RR K
Sbjct: 130 RLPRRVK 136
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C ++ +D G+ VCS CG V++ + +DE EWR F + R G P
Sbjct: 1 MCPICGSD-KLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAF-DPDQRAKRARTGAPMT 58
Query: 65 PLLADGGLSTVI------AKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIA 113
++ D GLST I N +G + + L WQ R +R L A +
Sbjct: 59 LMIHDKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELD 118
Query: 114 TMSDRIGQMRYIRRWK 129
M+ QMR RR K
Sbjct: 119 RMA---AQMRLPRRVK 131
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 26 CSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPNGASG 84
C +CGL+LE ID +WR F ++ RVG PT + D GL+T I K A G
Sbjct: 46 CEDCGLLLEEKRIDHGPDWRAFTHQE-QQKKSRVGAPTTRTMHDKGLTTSIDWKNKDAHG 104
Query: 85 EFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQMRYIR 126
LS+ L +WQ R D R L A M+ +G R +R
Sbjct: 105 RSLSADKRSQMNRLRKWQTRIRTSDAGERNLQFALSETDRMASGLGIPRSVR 156
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ + VC +CGLV++ + +D EWR F +E D RVG P
Sbjct: 14 CPECGSE-DLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 71
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 72 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 131
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 132 DSSRLGLPRSVR 143
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM
9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM
9790]
Length = 304
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CG+V+E SID+ EWR F ++ D R G P +
Sbjct: 9 CPECG-SGHLIRDYERGEVLCGDCGIVIEETSIDQGPEWRAFDSDQ-DEKRARTGSPMSF 66
Query: 66 LLADGGLSTVIA 77
L D GL+T I+
Sbjct: 67 LSHDKGLATEIS 78
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB
2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 6 CSDCKKHTE-VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H+E ++ D+ G+ +C++CG V+E ID+ EWR F ++ D R G P
Sbjct: 17 CPEC--HSEHLIRDYEHGELICADCGAVIEDSFIDQGPEWRAFDSDQ-DERRARTGSPMT 73
Query: 65 PLLADGGLSTVIA 77
L D GL+T I+
Sbjct: 74 YLSHDKGLATEIS 86
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C ++ D+ + +C CG VL+ + D EWR F +E RVG P
Sbjct: 40 ICPVCNSKN-IIKDYERAEIICEVCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 97
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 98 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 157
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 158 RIASKLGLPRNVR 170
>gi|167533145|ref|XP_001748253.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773373|gb|EDQ87014.1| predicted protein [Monosiga brevicollis MX1]
Length = 392
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 12 HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN---ESGDNDPVRVGGPTNPLLA 68
H + + S G VCS CG L + ID+ +EWR F N + DP RVG + L
Sbjct: 2 HPDSIPIQSEGFVVCSSCGRAL-AEVIDQGTEWRNFGNSDKNKSNADPSRVGAAEDKLYQ 60
Query: 69 DGGLSTVIAKPNGASGEFLSSSLGRWQNR-GSNPDRGLILAFKTIATMSDRIG 120
DG LST++ + +WQ+R + + L + I T++ RIG
Sbjct: 61 DGQLSTMVGHSK------VELPWAQWQHRTQATNQKTLSKVYGMIQTLASRIG 107
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKN-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C DC+ T VV D + VC ECGLVL ID EWR F + + RVG P
Sbjct: 21 CPDCETET-VVHDPDRRELVCEECGLVLSDEPIDYGPEWRAF-DAREHEELSRVGAPLTQ 78
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GL+T I + A+G + + L WQ R + +R L A I
Sbjct: 79 SMHDRGLTTTIDWRNRDANGHSMDAGKHGQLHRLRVWQERIRTKNAGERNLKYALSEIDR 138
Query: 115 MSDRIG 120
M +G
Sbjct: 139 MVSALG 144
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKN-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 42 ICPVCGSKN-IIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGAPMT 99
Query: 65 PLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIA 113
+ D GLSTVI N S G+ +S+ L +WQ R D R L A +
Sbjct: 100 YTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSELD 159
Query: 114 TMSDRIGQMRYIR 126
++ ++G R +R
Sbjct: 160 RIASKLGLPRNVR 172
>gi|292653697|ref|YP_003533595.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448290941|ref|ZP_21482083.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291369595|gb|ADE01823.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445577732|gb|ELY32159.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 308
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V+ D AG+ C CGL+++ H ID EWR+F + + RVG P
Sbjct: 22 ASCPECGG--QVITD--AGERRCQSCGLIIDGHGIDHGPEWRSFERK----ERKRVGAPR 73
Query: 64 NPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 74 TPTRHDHGLATNIGRHVDANG 94
>gi|448595201|ref|ZP_21653126.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742958|gb|ELZ94446.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 308
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V+ D AG+ C CGL+++ H ID EWR+F + + RVG P
Sbjct: 22 ASCPECGG--QVITD--AGERRCQSCGLIIDGHGIDHGPEWRSFERK----ERKRVGAPR 73
Query: 64 NPLLADGGLSTVIAKPNGASG 84
P D GL+T I + A+G
Sbjct: 74 TPTRHDHGLATNIGRHVDANG 94
>gi|448736943|ref|ZP_21719012.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445804993|gb|EMA55221.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 329
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C E DH G+T C +CG +++ + ID EWR + + RVG T
Sbjct: 31 VCPECDGRLE--HDHKHGETACVKCGFIVDENEIDHGPEWRAHTADEREQRS-RVGSSTT 87
Query: 65 PLLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNRG---SNPDRGLILAFKTIA 113
+L D G+ST I + A G LSS L W R S +R L A I
Sbjct: 88 KMLHDEGVSTEIDWRNEDAYGNSLSSRQRKKMNRLRTWHTRSQTVSAQERNLKHALGEIE 147
Query: 114 TMSDRIG 120
M+ +G
Sbjct: 148 RMASALG 154
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ + VC +CGLV++ + +D EWR F +E D RVG P
Sbjct: 14 CPECGSD-DLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKR-TRVGAPITY 71
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 72 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 131
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 132 DSSRLGLPRSVR 143
>gi|448494476|ref|ZP_21609463.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445689311|gb|ELZ41551.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 336
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 57 CPECGGRTRV----DGAERVCTDCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 110
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRG---SNPDRGLILAFKTIATMSDRIG 120
D GLST I + G NR + DR + A+ I ++ +G
Sbjct: 111 SRHDRGLSTEIGRSTKVKGRKRRRLARMRTQHNRAQISTKRDRNKVYAYTEIRRLTGVMG 170
Query: 121 QMRYIR 126
+R
Sbjct: 171 LPDSVR 176
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
+++D G+ VC+ CG V+ + ID EWR F + RVG P ++ D GL
Sbjct: 16 VRLIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRG-RVGAPMTMMIHDKGL 74
Query: 73 STVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIATMSDRIGQ 121
S+ I K G +S + L +WQ R +R L A + M+ ++G
Sbjct: 75 SSTIDWKNKDIHGHDISGTMRAKMYRLRKWQRRIRVSDAAERNLAFALSELDRMASQLGL 134
Query: 122 MRYIR 126
R I+
Sbjct: 135 PRNIK 139
>gi|448457245|ref|ZP_21595740.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445810826|gb|EMA60841.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 330
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 51 CPECGGRTRV----DSAERVCADCGLVVEADRIDHGPEWRSFDDD--DANPKRTGAPLTR 104
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGR--WQNRGSNPDRGLILAFKTIATMSDRIGQMR 123
D GLST I + G NR I+T DR
Sbjct: 105 SRHDRGLSTEIGRSTRVKGRKRRRLARMRTQHNRAQ------------ISTKRDRNKVYA 152
Query: 124 YIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKSAL 165
Y ++ ++ E+ ACTL D +LLR +L
Sbjct: 153 YTEIRRLTGVL--ELPDSVRDTACTLF-DSAQDESLLRGRSL 191
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
E+V D S + VC++CG V++ D EWR F +E RVG P + D GLS
Sbjct: 33 EIVSDSS--EIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKR-CRVGAPMTYTIHDKGLS 89
Query: 74 TVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIGQM 122
TVI + A G+ +S++ L +WQ R D R L A + ++ ++G
Sbjct: 90 TVIDWRNKDAYGKDISANKRAELYRLRKWQRRIRVSDASERNLAFALSELDRIASKLGLP 149
Query: 123 RYIR 126
++++
Sbjct: 150 KHVK 153
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C +++++D+ G+ C+ CG ++ +D EWR F + S R G P +
Sbjct: 10 CPSCG-SSKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAF-DASQREKRSRTGAPESI 67
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRIG 120
LL D GLST I +G L +WQ+R +R L A + ++ ++
Sbjct: 68 LLHDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLK 127
Query: 121 QMRYI 125
R++
Sbjct: 128 LPRHV 132
>gi|335436552|ref|ZP_08559345.1| transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897515|gb|EGM35646.1| transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 332
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPN- 80
G+ VC +CGLV + ID EWR F N+ + RVG PT L D GLST I N
Sbjct: 48 GEIVCEDCGLVTSENRIDRGPEWRAF-NQQEREEKSRVGAPTTDKLHDKGLSTNIDWQNR 106
Query: 81 GASGEFLSSS-------LGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYIRRWKIKSL 133
ASG LS S L W R AT +DR Q ++ S
Sbjct: 107 DASGTPLSKSKQEQMDRLREWNTRSK------------TATSADRTKQTGLAEVQRMASA 154
Query: 134 VEAEIKTHYWLLACTLLVDKKTSHALLRKSALSPM 168
+ + H AC +L + + L+R ++ M
Sbjct: 155 L--GLPEHVEETACVML-KQCVTQDLMRGRSIEGM 186
>gi|448340111|ref|ZP_21529093.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
gi|445631166|gb|ELY84406.1| transcription initiation factor TFB [Natrinema gari JCM 14663]
Length = 308
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 20 SAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKP 79
+A +TVC +CGLV++ H ID EWR F + + R G P D GLST I +
Sbjct: 34 NAVETVCEDCGLVVDEHQIDHGPEWRGFDADERE----RTGAPLTATRHDRGLSTEIGRG 89
Query: 80 NGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSDRIGQMRYIR 126
A+G LS + + R Q+RG S +R L + + R+ IR
Sbjct: 90 ADANGNELSGQKRQRLARMRREQSRGRFQSKAERNLAHGLSEVRRIVSRLELSESIR 146
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C K T +V D + G+ C +CG V+ + EWR+F+ E + R G PT+
Sbjct: 11 CPRCGKAT-LVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRS-RAGVPTSL 68
Query: 66 LLADGGLSTVIAKPN-GASGEFLSSS-------LGRWQNRGS--NP-DRGLILAFKTIAT 114
+ D GL+T+I + A+G+ LS+S L W +R P DR AF +
Sbjct: 69 AMHDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDR 128
Query: 115 MSDRIG 120
+ D++
Sbjct: 129 LKDKLA 134
>gi|389848542|ref|YP_006350780.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448618694|ref|ZP_21666806.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388245848|gb|AFK20793.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445746072|gb|ELZ97535.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 319
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 23 DTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTNPLLADGGLSTVIAKPNG 81
+TVC +CGLV++ ID EWRT D D R G P D GLST I +
Sbjct: 50 ETVCEDCGLVIDEQRIDHGPEWRTH-----DQDQRKRTGAPLTAARHDRGLSTEIGRRKD 104
Query: 82 ASGEFLS-------SSLGRWQNRG 98
A+G LS S + R QNRG
Sbjct: 105 ANGNELSGQKRQRLSRMRREQNRG 128
>gi|297805826|ref|XP_002870797.1| hypothetical protein ARALYDRAFT_916400 [Arabidopsis lyrata subsp.
lyrata]
gi|297316633|gb|EFH47056.1| hypothetical protein ARALYDRAFT_916400 [Arabidopsis lyrata subsp.
lyrata]
Length = 112
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38
C DCKK T+ V D+ +GDT+C+ECGL+L+SH I
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLILDSHYI 38
>gi|448497537|ref|ZP_21610490.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445699768|gb|ELZ51788.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 340
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T V + VC++CGLV+E+ ID EWR+F ++ D +P R G P
Sbjct: 61 CPECGGRTRV----DGAERVCADCGLVVEADRIDHGPEWRSFDDD--DTNPKRTGAPLTR 114
Query: 66 LLADGGLSTVIAKPNGASG 84
D GLST I + G
Sbjct: 115 SRHDRGLSTEIGRSTKVKG 133
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 22 GDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIA-KPN 80
G+ + E GL++E ID EWR F N S RVG PT + D GL+T I K
Sbjct: 39 GELIHEETGLIVEEEQIDPGPEWRAF-NHSERQSKSRVGAPTTKTMHDKGLTTTIDWKDK 97
Query: 81 GASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMS 116
A G +S+ L +WQ R D R L A I M+
Sbjct: 98 DAYGRSISAKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDRMA 143
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
+ C C ++ D+ + VC CG VL+ + D EWR F +E RVG P
Sbjct: 40 ELICPMCGSKN-IIKDYERAEIVCETCGCVLQQNLFDVGPEWRAFDHEQRVKRS-RVGPP 97
Query: 63 TNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNRGSNPD---RGLILAFKT 111
+ D GLSTVI N S G+ +S+ L +WQ R D R L A
Sbjct: 98 MTYTIHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASERNLAFALSE 157
Query: 112 IATMSDRIGQMRYIR 126
+ ++ ++G R +R
Sbjct: 158 LDRIASKLGLPRNVR 172
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,945,221,997
Number of Sequences: 23463169
Number of extensions: 120135051
Number of successful extensions: 277058
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 274873
Number of HSP's gapped (non-prelim): 1334
length of query: 182
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 49
effective length of database: 9,238,593,890
effective search space: 452691100610
effective search space used: 452691100610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)