BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030129
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 123/126 (97%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DR+G
Sbjct: 61 GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>sp|Q8W0W3|TF2B_ORYSJ Transcription initiation factor IIB OS=Oryza sativa subsp. japonica
GN=TFIIB PE=1 SV=1
Length = 312
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 106/126 (84%), Positives = 116/126 (92%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DR+G
Sbjct: 61 GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2
SV=1
Length = 313
Score = 233 bits (594), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/127 (86%), Positives = 116/127 (91%), Gaps = 1/127 (0%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPN-GASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRI 119
GP+NPLL DGGLSTVIAKPN G GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDR+
Sbjct: 61 GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120
Query: 120 GQMRYIR 126
G + I+
Sbjct: 121 GLVATIK 127
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 OS=Arabidopsis thaliana
GN=TFIIB1 PE=1 SV=1
Length = 312
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 114/126 (90%)
Query: 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60
Query: 61 GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIG 120
GPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+R+G
Sbjct: 61 GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120
Query: 121 QMRYIR 126
+ I+
Sbjct: 121 LVATIK 126
>sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster
GN=TfIIB PE=2 SV=1
Length = 315
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPL 73
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DRI +
Sbjct: 74 LSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKT 132
Query: 125 I 125
I
Sbjct: 133 I 133
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2
SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1
SV=1
Length = 316
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Query: 9 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPL 74
Query: 67 LADGGLSTVIAKPNGASG--EFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQM 122
L+DG LST+I K GA+ EF +S ++QNR S+ DR ++ AFK I TM+DRI
Sbjct: 75 LSDGDLSTMIGKGTGAASFDEFGNS---KYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 123 RYI 125
R I
Sbjct: 132 RNI 134
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H + +V D+ AGD +CSECGLV+ ID SEWRTF+N+ DP RVG NPL
Sbjct: 15 CPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQNPL 74
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRY 124
L+ G L+T+I K G S F ++QNR S+ DR ++ AFK I MSDRI R
Sbjct: 75 LSGGDLTTMIGKGTG-SASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLPRN 133
Query: 125 I 125
I
Sbjct: 134 I 134
>sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum
GN=gtf2b PE=3 SV=1
Length = 325
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Query: 6 CSDCK-KHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGPT 63
C C+ + +++ D++ GD +C CG+V+ +DE SEWRTF+N ES DP RVGGP
Sbjct: 23 CMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTGADPNRVGGPI 82
Query: 64 NPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRI 119
NPLL D LST + K + SG +L R QN+ + DR L+ AFK I M+D +
Sbjct: 83 NPLLRDSALSTTVGKGSKDSG-----TLTRLQNKSALGTGDRNLLAAFKEIGRMADHM 135
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 9 CKKHTEV--VFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H +V + DH AGD VC CGLV+ +D +EWR+F+NE NDP RVG P NPL
Sbjct: 7 CPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPL 66
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRG-SNPDRGLILAFKTIATMSDRIGQMRYI 125
L+ G LST IA G G +SL Q + +N DR + A I MS+RI R I
Sbjct: 67 LSGGDLSTTIAV--GFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLPRNI 124
Query: 126 R 126
+
Sbjct: 125 Q 125
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN-ESGDNDPVRVGGP 62
CS+C++ +V + S+GDTVC CGLVL ID SEWRTF+N + DP RVG
Sbjct: 19 ICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKV 78
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGR-WQNRGSNPDRGLILAFKTIATMSDRIGQ 121
NPLL L T I+ +GA G L+ + GR Q RG ++ L+ A+K I M D I
Sbjct: 79 ANPLLNGSQLDTTISSYDGA-GAMLAKAQGRSVQVRG---EKNLLTAYKEIGAMCDAISL 134
Query: 122 MRYI 125
+ I
Sbjct: 135 PKVI 138
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFAN--ESGDNDPVRVGGP 62
C +CK + +VV S GD VC+ CGLVL +D SEWRTF+N ++GD DP RVG
Sbjct: 28 CPECKVYPPKVVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGD-DPSRVGEA 86
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL L+T I + G+ ++ L R Q++ D L A+ I M D
Sbjct: 87 SNPLLDGNHLTTRIGQAQGSDAR-VTRDLNRAQSKSIVDKKDNELQAAYAKITMMCD 142
>sp|Q8SRP3|TF2B_ENCCU Transcription initiation factor IIB OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU06_1100i PE=3 SV=1
Length = 312
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
CSDC + +V D+ G VC CG ++ + IDE SEWR+F +S DP R+G +NP
Sbjct: 14 CSDCGETQNIVEDYKNGYHVCGRCGCIVGNRIIDEGSEWRSFG-DSNKVDPCRIGSASNP 72
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYI 125
L L T+I+ G + LS + RG P+R L I +R R I
Sbjct: 73 YLESEQLDTMISTGGGMNSYVLSKIQMKNSMRG--PERALKHGMNLITAFCERSNLSRTI 130
>sp|P29055|TF2B_YEAST Transcription initiation factor IIB OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SUA7 PE=1 SV=1
Length = 345
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 CSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGGP 62
C +CK + ++V S GD VC+ CGLVL +D SEWRTF+N+ +GD DP RVG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGD-DPSRVGEA 82
Query: 63 TNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSD 117
+NPLL LST I K F + L + Q + D + AF I + D
Sbjct: 83 SNPLLDGNNLSTRIGKGETTDMRF-TKELNKAQGKNVMDKKDNEVQAAFAKITMLCD 138
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB
PE=3 SV=1
Length = 293
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 27/121 (22%)
Query: 9 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPL 66
C H E ++ D+ AGD +CSECGLV+ GD GGP NPL
Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVV------------------GDA----FGGPENPL 51
Query: 67 LADGGLSTVIAKPNGASGEFLSSSLGRWQNRGS--NPDRGLILAFKTIATMSDRIGQMRY 124
L+ G LST+I P S F + ++ NR + + DR LI AFK I++M+DRI +
Sbjct: 52 LSGGHLSTIIG-PGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADRINLPKT 110
Query: 125 I 125
I
Sbjct: 111 I 111
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V+ D G++VC +CGLV+E + ID EWR F N + ++ RVG PT
Sbjct: 32 CPECGG--QVIDDEEHGESVCVDCGLVVEENGIDRGPEWRAF-NSTEKDEKSRVGAPTTN 88
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
++ D GLST I + A G LSS+ L +W R ++ +R L A I
Sbjct: 89 MMHDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGEIER 148
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 149 MASALGLPKEVR 160
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C V+ D S + VC +CGLVLE ID EWR F N S + RVG PT
Sbjct: 25 CPECN-SANVITDQS--ERVCEDCGLVLEDDQIDHGPEWRAF-NSSERDQKSRVGAPTTK 80
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G L + L +WQ R D R L A I
Sbjct: 81 TMHDKGLTTQIDWKDKDAYGRSLDAKKRNQMNRLRKWQERIRTKDAGERNLQFALSEIDR 140
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 141 MASALGVPRSVR 152
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 13 TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL 72
T++VF+ G+ VC+ CG ++ +D+ EWR F E + R G P +P L D GL
Sbjct: 17 TDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRG-RTGAPLSPTLHDHGL 75
Query: 73 STVI-AKPNGASGEFLS-------SSLGRWQNRG---SNPDRGLILAFKTIATMSD 117
STVI + A G+ LS L +WQ R + DR L +A + M++
Sbjct: 76 STVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDRMAN 131
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C H +V D G+T+C +CGLV+E +D EWR F + D+ RVG PT
Sbjct: 36 VCPECSGH--LVTDEEHGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKS-RVGAPTT 92
Query: 65 PLLADGGLSTVIAKPN-GASGEFLS-------SSLGRWQNRGSNPD---RGLILAFKTIA 113
++ D GLST I N A G+ LS L W R D R L A I
Sbjct: 93 KMMHDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNERFRTRDSKERNLKQALGEID 152
Query: 114 TMSDRIGQMRYIR 126
M+ +G +R
Sbjct: 153 RMASALGLPENVR 165
>sp|Q975S1|TF2B_SULTO Transcription initiation factor IIB OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=tfb PE=3
SV=1
Length = 308
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
++VFD G+ +C+E G V+E +ID+ EWR F E + RVGGP N + D G+S
Sbjct: 18 KIVFDEERGEYICTETGEVIEERAIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 76
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 77 TVIDWKDKDAMGRTLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 132
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V + VC++CGLV+E ID EWR F N + RVG PT
Sbjct: 29 CPECGSDN-LVKSSDRAELVCNDCGLVVEEEQIDPGPEWRAF-NHQERQEKSRVGAPTTQ 86
Query: 66 LLADGGLSTVIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIAT 114
+ D GL+T I K A G +SS L +WQ R D R L A I
Sbjct: 87 TMHDKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 146
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 147 MASALGVPRSVR 158
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T++ C +CK ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TESVCPECKSR-QLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 152 ELDRMASALGLPRNVR 167
>sp|Q9HR45|TF2B4_HALSA Transcription initiation factor IIB 4 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbD PE=3
SV=1
Length = 328
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
D C +C + ++V D G+T C ECGLV+E ID EWR F N ++ RVG P
Sbjct: 29 DHGCPEC--NGDLVTDEDRGETTCGECGLVVEEDGIDHGPEWRAF-NAQEQDEKSRVGAP 85
Query: 63 TNPLLADGGLSTVIA-KPNGASGEFLS-------SSLGRWQNR---GSNPDRGLILAFKT 111
T ++ D GLST I + A G LS L +W R ++ +R L A
Sbjct: 86 TTNMMHDKGLSTNIGWQDKDAYGNTLSGRQRRKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 112 IATMSDRIG 120
I M+ G
Sbjct: 146 IERMASAFG 154
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C +V D+ + VCSECGLV++ + ID+ EWR F ++ RVG P
Sbjct: 41 CPECGSRA-LVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRS-RVGAPMTY 98
Query: 66 LLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 99 TIHDKGLSTMIDWRNRDSYGKTISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDR 158
Query: 115 MSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 159 MASALGLSRNVR 170
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLST 74
VV D G++VC++CGLV+E ID EWR F ++ D + RVG PT + D GLST
Sbjct: 32 VVNDEEHGESVCADCGLVVEEDGIDRGPEWRAFDSKEKD-EKSRVGAPTTNTMHDKGLST 90
Query: 75 VIA-KPNGASGEFLSSS-------LGRWQNRGSNPD---RGLILAFKTIATMSDRIG 120
I + A G LSS+ L +W R D R L A I M+ +G
Sbjct: 91 NIDWRDKDAYGNSLSSNQRQKMQRLRKWNERFRTRDAKERNLKQALGEIDRMASALG 147
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +CSE G VLE ID+ EWR F E + RVGGP N + D GLS
Sbjct: 19 KIIFDAERGEYICSETGEVLEDKIIDQGPEWRAFTPEEKEKRS-RVGGPLNNTIHDRGLS 77
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNRG---SNPDRGLILAFKTIATMSDRIGQM 122
T+I K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 78 TLIDWKDKDAMGRTLDPKRRLEALRWRKWQIRARIQSSIDRNLAQAMNEL----ERIGNL 133
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPTN 64
C C TE ++D S G+ VC CG V+E + +DE EWR F + G + RVG P +
Sbjct: 7 CPVCG-STEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAF--DPGQREKRARVGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 64 ILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPT 63
A C +C +V D+ + VC +CGLV+++ +DE EWR F ++ RVG P
Sbjct: 39 AVCPECGSRN-LVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRS-RVGAPM 96
Query: 64 NPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFKTI 112
+ D GLST+I N S G+ +SS L +WQ R + +R L A +
Sbjct: 97 TYTIHDKGLSTMIDWRNRDSYGKSISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSEL 156
Query: 113 ATMSDRIGQMRYIR 126
M+ +G R +R
Sbjct: 157 DRMASALGLPRTVR 170
>sp|Q9UWN6|TF2B_SULAC Transcription initiation factor IIB OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=tfb PE=3 SV=2
Length = 307
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 14 EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLS 73
+++FD G+ +C+E G V+E ID+ EWR F E + RVGGP N + D G+S
Sbjct: 17 KIIFDEERGEYICTETGEVIEERIIDQGPEWRAFTPEEKEKRS-RVGGPLNQTIHDMGIS 75
Query: 74 TVIA-KPNGASGEFLSSSL-------GRWQNR---GSNPDRGLILAFKTIATMSDRIGQM 122
TVI K A G L +WQ R S+ DR L A + +RIG +
Sbjct: 76 TVIDWKDKDAMGRSLDPKRRLEVLRWRKWQIRTRIQSSIDRNLAQAMNEL----ERIGNL 131
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 6 VCPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRI 119
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 64 ILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQL 123
Query: 120 GQMRYI 125
R++
Sbjct: 124 KLPRHV 129
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C C+ E+++D G+ VC++CG V+E + ID EWR F + S R G P +
Sbjct: 6 VCPACE-SAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAF-DASQRERRSRTGAPES 63
Query: 65 PLLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR---GSNPDRGLILAFKTIATMSDRI 119
LL D GLST I SG L +WQ+R +R L A + ++ ++
Sbjct: 64 ILLHDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQL 123
Query: 120 GQMRYI 125
R++
Sbjct: 124 KLPRHV 129
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T+++ DH G+ VC CGLV++ + +D EWR F +E D RVG P
Sbjct: 15 CPECG-STKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKR-TRVGAPITY 72
Query: 66 LLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 73 TIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDR 132
Query: 115 MSDRIGQMRYIR 126
S R+G R +R
Sbjct: 133 DSSRLGLPRSVR 144
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C ++ D+ G+ +C +CGLV+E ID EWR F +E D RVG P
Sbjct: 30 CPECG-SPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRS-RVGAPVTY 87
Query: 66 LLADGGLSTVIAKPN-GASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST+I N G+ +S L +WQ R + +R L A +
Sbjct: 88 TIHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDR 147
Query: 115 MSDRIGQMRYIR 126
M+ +G + +R
Sbjct: 148 MASALGLPKSVR 159
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
+ C +C ++V D+ + VC CGLVL+ ID EWR F ++ RVG
Sbjct: 37 VQSVCPECGSR-QLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRS-RVGA 94
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 95 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 154
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 155 ELDRMASALGLPRNVR 170
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGG 61
T+ C +C ++V D+ + VC CGLV++ ID EWR F ++ RVG
Sbjct: 34 TETVCPECGGR-QLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRS-RVGA 91
Query: 62 PTNPLLADGGLSTVIAKPNGAS-GEFLSSS-------LGRWQNR---GSNPDRGLILAFK 110
P + D GLST+I N S G +SS L +WQ R + +R L A
Sbjct: 92 PMTFTIHDKGLSTMIDWRNRDSYGRAISSKNRAQLYRLRKWQRRIRVSNATERNLAFALS 151
Query: 111 TIATMSDRIGQMRYIR 126
+ M+ +G R +R
Sbjct: 152 ELDRMASALGLPRNVR 167
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTN 64
C +C TE++ D+ + VC+ CGLV++ + +D EWR F +E D RVG P
Sbjct: 13 VCPECG-STELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKR-TRVGAPIT 70
Query: 65 PLLADGGLSTVIAKPNG--------ASGEFLSSSLGRWQNR---GSNPDRGLILAFKTIA 113
+ D GLST+I N A L +WQ + +R L A +
Sbjct: 71 YTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELD 130
Query: 114 TMSDRIGQMRYIR 126
S R+G R +R
Sbjct: 131 RDSSRLGLPRSVR 143
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC+ CG V+E + ID EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C C TE ++D G+ VC+ CG V+E + +D EWR F + S R G P +
Sbjct: 7 CPVCG-STEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAF-DASQREKRSRTGAPESI 64
Query: 66 LLADGGLSTVIAKPNGASGEFLSS--SLGRWQNR 97
LL D GLST I +G L +WQ+R
Sbjct: 65 LLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSR 98
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESR-ARAGSPMTY 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ K + G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MS 116
M+
Sbjct: 134 MA 135
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP-VRVGGPT 63
C C TE ++D G+ VC++CG V+E + +DE EWR F E G + R G P
Sbjct: 9 VCPICG-STEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAF--EPGQREKRARTGAPM 65
Query: 64 NPLLADGGLSTVI 76
++ D GLST I
Sbjct: 66 TLMIHDKGLSTDI 78
>sp|P58110|TF2B2_SULSO Transcription initiation factor IIB 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbB
PE=3 SV=1
Length = 293
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C CK + +D G VC+ C V+E ++D +WR + N N+ RVG P+ P
Sbjct: 3 CPYCKTDNAITYDVEKGMYVCTNCASVIEDSAVDPGPDWRAY-NAKDRNEKERVGSPSTP 61
Query: 66 LLADGGLSTVIAKPNGASGEFLSSSLGRWQN--RGSNPDRGLI 106
+ D G T+I A + + R QN R S D+ L+
Sbjct: 62 KVHDWGFHTIIGY-GRAKDRLKTLKMQRMQNKIRVSPKDKKLV 103
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 6 CSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
C +C T ++ D+ G+ VC ECG V+E ID+ EWR F +E ++ R G P
Sbjct: 16 CPECG-STNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESR-ARAGSPMTF 73
Query: 66 LLADGGLSTVIA-KPNGASGEFLSS-------SLGRWQNR---GSNPDRGLILAFKTIAT 114
+ D GLST I+ K + G + + L +WQ R + +R L A + +
Sbjct: 74 TIHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELER 133
Query: 115 MS 116
M+
Sbjct: 134 MA 135
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=tfb PE=3 SV=1
Length = 307
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 2 TDAFCSDCKK--HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRV 59
T F +C E+VFD G+ VC+ CGLV E ID EWR F N R
Sbjct: 8 TGKFTEECPACGSAEIVFDEERGEYVCANCGLVTEDPVIDPGPEWRHF-NPDQRQRRSRT 66
Query: 60 GGPTNPLLADGGLSTVI 76
G P L D G+ST+I
Sbjct: 67 GEPVKLRLPDKGISTII 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,300,259
Number of Sequences: 539616
Number of extensions: 2818942
Number of successful extensions: 6325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 6183
Number of HSP's gapped (non-prelim): 120
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)