Query 030129
Match_columns 182
No_of_seqs 139 out of 830
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 6E-48 2.1E-52 330.9 7.2 176 3-179 21-212 (345)
2 3k7a_M Transcription initiatio 100.0 3E-44 1E-48 307.9 1.1 174 3-179 21-212 (345)
3 3k1f_M Transcription initiatio 99.8 5.8E-22 2E-26 152.6 3.5 66 3-68 21-88 (197)
4 1dl6_A Transcription factor II 99.8 6.1E-20 2.1E-24 118.7 4.9 47 3-50 11-57 (58)
5 1pft_A TFIIB, PFTFIIBN; N-term 99.7 4.6E-17 1.6E-21 102.1 4.8 44 4-48 6-49 (50)
6 1ais_B TFB TFIIB, protein (tra 99.6 2.5E-15 8.4E-20 118.7 5.4 81 99-179 3-95 (200)
7 1c9b_A General transcription f 99.4 2.9E-13 9.8E-18 107.4 6.5 79 101-179 1-91 (207)
8 1ais_B TFB TFIIB, protein (tra 99.0 5.9E-10 2E-14 87.6 5.2 72 107-178 107-190 (200)
9 1c9b_A General transcription f 98.8 6.1E-09 2.1E-13 82.3 5.9 72 107-178 101-184 (207)
10 4bbr_M Transcription initiatio 98.6 6.8E-09 2.3E-13 88.6 0.0 71 106-176 233-315 (345)
11 3k7a_M Transcription initiatio 98.4 4.6E-08 1.6E-12 83.3 0.0 69 107-175 234-314 (345)
12 1zp2_A RNA polymerase II holoe 98.0 1.3E-05 4.6E-10 64.2 6.7 71 105-175 28-119 (235)
13 2ivx_A Cyclin-T2; transcriptio 97.4 0.00054 1.8E-08 55.3 7.7 58 106-163 32-101 (257)
14 2i53_A Cyclin K; cell cycle, t 97.3 0.00076 2.6E-08 54.3 8.3 57 106-162 42-110 (258)
15 1jkw_A Cyclin H; cell cycle, c 97.3 0.00088 3E-08 56.2 8.5 64 101-164 52-130 (323)
16 3rgf_B Cyclin-C; protein kinas 97.2 0.0009 3.1E-08 55.1 8.0 55 101-155 38-100 (285)
17 2pk2_A Cyclin-T1, protein TAT; 97.1 0.00073 2.5E-08 57.6 6.4 57 106-162 39-107 (358)
18 2js4_A UPF0434 protein BB2007; 96.8 0.0012 4.1E-08 43.5 4.1 31 2-34 7-37 (70)
19 1qxf_A GR2, 30S ribosomal prot 96.8 0.00058 2E-08 44.2 2.1 30 4-34 8-37 (66)
20 2jr6_A UPF0434 protein NMA0874 96.8 0.0014 4.8E-08 42.9 3.9 31 2-34 7-37 (68)
21 2jny_A Uncharacterized BCR; st 96.8 0.0015 5.1E-08 42.7 4.0 30 3-34 10-39 (67)
22 1vq8_Z 50S ribosomal protein L 96.7 0.00079 2.7E-08 45.8 2.5 30 4-35 28-57 (83)
23 2pk7_A Uncharacterized protein 96.6 0.0015 5E-08 42.9 3.1 30 3-34 8-37 (69)
24 2hf1_A Tetraacyldisaccharide-1 96.6 0.0018 6E-08 42.4 3.4 29 4-34 9-37 (68)
25 3j20_W 30S ribosomal protein S 96.6 0.0012 4.2E-08 42.4 2.5 30 4-34 16-45 (63)
26 2b9r_A Human cyclin B1; cell c 96.5 0.0063 2.1E-07 49.5 7.1 70 106-175 39-123 (269)
27 2xzm_6 RPS27E; ribosome, trans 96.4 0.0013 4.5E-08 44.2 1.9 31 4-35 33-63 (81)
28 3u5c_b RP61, YS20, 40S ribosom 96.2 0.0015 5.2E-08 44.0 1.4 31 4-35 35-65 (82)
29 2cch_B Cyclin A2, cyclin-A; co 96.2 0.011 3.8E-07 47.7 6.7 69 105-173 39-122 (260)
30 2b9r_A Human cyclin B1; cell c 96.1 0.006 2E-07 49.6 4.9 69 107-175 137-217 (269)
31 3rgf_B Cyclin-C; protein kinas 96.0 0.013 4.4E-07 48.1 6.3 65 108-172 157-231 (285)
32 3j20_Y 30S ribosomal protein S 95.8 0.0074 2.5E-07 37.0 3.2 28 4-33 20-47 (50)
33 1zp2_A RNA polymerase II holoe 95.8 0.016 5.4E-07 46.0 5.9 50 108-157 134-190 (235)
34 3iz6_X 40S ribosomal protein S 95.7 0.0035 1.2E-07 42.6 1.5 30 4-34 37-66 (86)
35 2w96_A G1/S-specific cyclin-D1 95.5 0.027 9.3E-07 45.6 6.5 69 105-173 57-140 (271)
36 2w96_A G1/S-specific cyclin-D1 95.1 0.026 8.9E-07 45.7 5.2 68 107-174 156-248 (271)
37 2cch_B Cyclin A2, cyclin-A; co 95.1 0.02 6.9E-07 46.1 4.4 70 107-176 138-221 (260)
38 1g3n_C V-cyclin; cyclin-depend 95.0 0.035 1.2E-06 44.6 5.5 69 105-173 51-134 (257)
39 1w98_B Cyclin E, G1/S-specific 94.6 0.091 3.1E-06 42.9 7.1 69 106-174 51-135 (283)
40 2k4x_A 30S ribosomal protein S 94.4 0.02 6.8E-07 35.8 2.1 28 3-32 18-45 (55)
41 3m03_A ORC6, origin recognitio 94.3 0.15 5E-06 35.4 6.5 58 112-169 6-79 (95)
42 2i53_A Cyclin K; cell cycle, t 94.1 0.063 2.1E-06 42.9 5.0 53 107-159 150-213 (258)
43 2ivx_A Cyclin-T2; transcriptio 94.0 0.15 5.1E-06 40.7 7.1 50 107-156 145-202 (257)
44 2kpi_A Uncharacterized protein 94.0 0.06 2.1E-06 33.6 3.7 26 4-33 11-38 (56)
45 2akl_A PHNA-like protein PA012 93.4 0.2 6.7E-06 36.6 6.1 28 3-33 27-54 (138)
46 2f2c_A Cyclin homolog, V-cycli 93.4 0.059 2E-06 43.2 3.7 67 108-174 152-239 (254)
47 1g3n_C V-cyclin; cyclin-depend 93.4 0.07 2.4E-06 42.8 4.2 68 107-174 150-239 (257)
48 1twf_I B12.6, DNA-directed RNA 93.1 0.058 2E-06 38.9 3.0 34 1-34 2-37 (122)
49 1nui_A DNA primase/helicase; z 92.7 0.062 2.1E-06 43.0 2.9 29 3-32 14-42 (255)
50 2k5r_A Uncharacterized protein 92.6 0.067 2.3E-06 37.2 2.6 31 2-34 7-64 (97)
51 3g33_B CCND3 protein; Ser/Thr 92.5 0.21 7E-06 41.3 5.9 61 104-164 70-143 (306)
52 3h0g_I DNA-directed RNA polyme 92.3 0.13 4.3E-06 36.6 3.7 31 2-34 3-37 (113)
53 2f2c_A Cyclin homolog, V-cycli 92.2 0.22 7.5E-06 39.8 5.5 50 106-155 53-109 (254)
54 3j21_i 50S ribosomal protein L 91.6 0.14 4.7E-06 34.6 3.0 32 3-36 35-66 (83)
55 6rxn_A Rubredoxin; electron tr 91.2 0.057 2E-06 32.4 0.7 18 1-22 2-19 (46)
56 3cc2_Z 50S ribosomal protein L 91.2 0.11 3.8E-06 37.2 2.4 30 4-35 61-90 (116)
57 1ffk_W Ribosomal protein L37AE 91.0 0.12 4.2E-06 34.0 2.3 31 4-36 28-58 (73)
58 1qyp_A RNA polymerase II; tran 91.0 0.25 8.4E-06 30.6 3.6 31 4-35 16-55 (57)
59 4rxn_A Rubredoxin; electron tr 90.9 0.099 3.4E-06 32.4 1.7 18 1-22 1-18 (54)
60 1e8j_A Rubredoxin; iron-sulfur 90.6 0.092 3.2E-06 32.3 1.3 10 1-10 1-10 (52)
61 4a17_Y RPL37A, 60S ribosomal p 90.5 0.16 5.4E-06 35.6 2.6 29 4-34 37-65 (103)
62 3iz5_m 60S ribosomal protein L 90.4 0.17 6E-06 34.7 2.7 29 4-34 37-65 (92)
63 3g33_B CCND3 protein; Ser/Thr 90.3 0.26 9E-06 40.7 4.3 65 109-173 172-257 (306)
64 4ell_A Retinoblastoma-associat 90.2 0.9 3.1E-05 39.3 7.7 51 106-156 280-340 (411)
65 3jyw_9 60S ribosomal protein L 90.1 0.15 5.2E-06 33.5 2.1 30 4-35 27-56 (72)
66 3izc_m 60S ribosomal protein R 89.9 0.2 7E-06 34.4 2.7 29 4-34 37-65 (92)
67 1gh9_A 8.3 kDa protein (gene M 89.8 0.23 8E-06 32.5 2.8 27 4-34 5-31 (71)
68 1w98_B Cyclin E, G1/S-specific 89.6 0.22 7.6E-06 40.6 3.2 65 108-174 151-233 (283)
69 1twf_L ABC10-alpha, DNA-direct 89.6 0.13 4.4E-06 33.6 1.4 26 5-33 30-56 (70)
70 3h4c_A Transcription factor TF 89.1 1 3.5E-05 35.6 6.5 50 107-156 14-73 (260)
71 2r7g_A PP110, retinoblastoma-a 88.6 1.4 4.9E-05 37.2 7.6 53 104-156 214-276 (347)
72 3qt1_I DNA-directed RNA polyme 88.6 0.22 7.4E-06 36.5 2.2 29 3-33 24-56 (133)
73 3ga8_A HTH-type transcriptiona 88.3 0.35 1.2E-05 31.8 2.9 29 3-33 2-46 (78)
74 2pk2_A Cyclin-T1, protein TAT; 88.2 0.22 7.5E-06 42.2 2.3 49 108-156 153-209 (358)
75 1jkw_A Cyclin H; cell cycle, c 88.0 0.84 2.9E-05 37.9 5.8 47 110-156 165-225 (323)
76 1k81_A EIF-2-beta, probable tr 87.9 0.26 8.8E-06 27.9 1.8 28 5-32 2-30 (36)
77 3u50_C Telomerase-associated p 87.2 0.41 1.4E-05 36.5 3.1 25 5-32 44-68 (172)
78 4elj_A Retinoblastoma-associat 85.9 2.8 9.6E-05 38.3 8.3 52 105-156 524-585 (656)
79 1dxg_A Desulforedoxin; non-hem 85.7 0.53 1.8E-05 26.4 2.3 27 4-33 7-33 (36)
80 1wii_A Hypothetical UPF0222 pr 85.7 0.36 1.2E-05 32.7 1.9 31 5-35 25-59 (85)
81 2qdj_A Retinoblastoma-associat 85.3 1.7 5.8E-05 36.1 6.1 57 111-167 5-77 (304)
82 2v3b_B Rubredoxin 2, rubredoxi 85.0 0.31 1.1E-05 30.2 1.2 12 24-35 4-15 (55)
83 3o9x_A Uncharacterized HTH-typ 83.5 0.57 1.9E-05 33.3 2.2 31 3-34 2-47 (133)
84 3j21_g 50S ribosomal protein L 83.5 0.33 1.1E-05 29.7 0.8 23 4-32 15-37 (51)
85 2ct7_A Ring finger protein 31; 83.4 0.89 3.1E-05 30.3 3.0 27 5-33 27-53 (86)
86 1dx8_A Rubredoxin; electron tr 83.0 0.45 1.6E-05 31.0 1.4 13 23-35 7-19 (70)
87 2kn9_A Rubredoxin; metalloprot 82.1 0.47 1.6E-05 31.8 1.2 16 22-37 26-41 (81)
88 2apo_B Ribosome biogenesis pro 81.1 0.52 1.8E-05 29.8 1.1 25 2-34 5-29 (60)
89 1gnf_A Transcription factor GA 80.9 0.48 1.6E-05 28.3 0.8 31 3-33 4-35 (46)
90 1tfi_A Transcriptional elongat 80.7 1.3 4.5E-05 26.7 2.8 29 3-32 9-46 (50)
91 1l1o_C Replication protein A 7 78.4 1.3 4.5E-05 33.6 2.8 27 5-34 45-73 (181)
92 1vk6_A NADH pyrophosphatase; 1 78.3 1.8 6.1E-05 35.0 3.8 30 3-34 107-136 (269)
93 1s24_A Rubredoxin 2; electron 76.8 0.69 2.4E-05 31.4 0.7 16 21-36 33-48 (87)
94 1f5q_B Gamma herpesvirus cycli 75.6 6.5 0.00022 31.3 6.3 50 106-155 50-106 (252)
95 2e9h_A EIF-5, eukaryotic trans 75.3 2.6 8.8E-05 31.6 3.6 29 4-32 104-135 (157)
96 3cng_A Nudix hydrolase; struct 74.0 2.9 0.0001 31.2 3.7 28 3-31 3-33 (189)
97 4e2x_A TCAB9; kijanose, tetron 73.6 1.6 5.5E-05 36.7 2.4 17 24-40 54-70 (416)
98 2vut_I AREA, nitrogen regulato 73.5 0.76 2.6E-05 27.0 0.2 30 4-33 2-32 (43)
99 2jrp_A Putative cytoplasmic pr 73.4 1.6 5.3E-05 29.2 1.7 10 1-11 1-10 (81)
100 2fiy_A Protein FDHE homolog; F 73.1 3.6 0.00012 34.1 4.3 33 2-34 221-264 (309)
101 1d0q_A DNA primase; zinc-bindi 72.2 3.1 0.0001 28.6 3.2 27 5-31 39-66 (103)
102 4gat_A Nitrogen regulatory pro 71.2 1.1 3.8E-05 28.7 0.6 31 4-34 10-41 (66)
103 2g2k_A EIF-5, eukaryotic trans 70.1 2.6 8.9E-05 32.0 2.5 28 5-32 98-128 (170)
104 2jne_A Hypothetical protein YF 69.4 2.8 9.7E-05 28.9 2.4 28 1-33 31-58 (101)
105 2fiy_A Protein FDHE homolog; F 69.3 2.8 9.6E-05 34.8 2.8 30 3-32 182-217 (309)
106 2kdx_A HYPA, hydrogenase/ureas 68.9 2.1 7.1E-05 30.3 1.7 22 13-34 63-84 (119)
107 2aus_D NOP10, ribosome biogene 68.3 1.5 5E-05 27.7 0.7 24 2-33 4-27 (60)
108 2jrp_A Putative cytoplasmic pr 68.1 3.7 0.00013 27.4 2.7 7 5-11 33-39 (81)
109 4esj_A Type-2 restriction enzy 67.8 3.1 0.00011 33.4 2.6 30 4-34 35-67 (257)
110 2kae_A GATA-type transcription 67.5 1.2 4.1E-05 29.0 0.2 9 24-32 9-17 (71)
111 3dfx_A Trans-acting T-cell-spe 67.4 1 3.5E-05 28.7 -0.2 31 4-34 8-39 (63)
112 4gop_C Putative uncharacterize 67.2 4.4 0.00015 34.8 3.8 27 5-34 310-338 (444)
113 2fnf_X Putative RAS effector N 66.5 5.1 0.00018 25.7 3.1 31 2-38 34-64 (72)
114 2jmo_A Parkin; IBR, E3 ligase, 65.7 3.8 0.00013 26.8 2.4 30 2-33 24-60 (80)
115 1twf_I B12.6, DNA-directed RNA 65.6 8.4 0.00029 27.3 4.4 31 4-35 73-112 (122)
116 3h0g_L DNA-directed RNA polyme 64.7 3.2 0.00011 26.4 1.7 26 4-32 22-47 (63)
117 1rfh_A RAS association (ralgds 64.4 5.6 0.00019 24.4 2.9 27 3-35 22-48 (59)
118 1ovx_A ATP-dependent CLP prote 61.3 3.6 0.00012 26.4 1.5 27 3-31 18-48 (67)
119 2con_A RUH-035 protein, NIN on 61.0 3.7 0.00013 27.2 1.6 11 1-11 28-38 (79)
120 1vzi_A Desulfoferrodoxin; ferr 60.8 4.8 0.00016 28.9 2.3 28 4-34 8-35 (126)
121 4elj_A Retinoblastoma-associat 60.7 21 0.0007 32.7 7.0 57 111-167 7-79 (656)
122 3q87_A Putative uncharacterize 59.1 2.1 7.1E-05 31.0 0.1 17 18-34 94-110 (125)
123 2zjr_Z 50S ribosomal protein L 58.0 2.6 8.9E-05 26.4 0.4 21 5-32 32-52 (60)
124 2au3_A DNA primase; zinc ribbo 57.9 6.7 0.00023 33.4 3.2 27 5-31 36-63 (407)
125 1yk4_A Rubredoxin, RD; electro 57.8 8.8 0.0003 23.2 2.8 13 24-36 3-15 (52)
126 2zkr_2 60S ribosomal protein L 57.7 2.9 0.0001 28.8 0.7 24 3-31 16-39 (97)
127 1u5k_A Hypothetical protein; O 56.7 6.6 0.00023 30.7 2.7 28 4-31 151-178 (244)
128 1s24_A Rubredoxin 2; electron 56.6 9.5 0.00032 25.7 3.1 19 1-23 33-51 (87)
129 2ds5_A CLPX, ATP-dependent CLP 56.5 5 0.00017 24.3 1.5 25 3-29 11-39 (51)
130 2riq_A Poly [ADP-ribose] polym 56.3 7 0.00024 29.3 2.6 23 4-32 79-101 (160)
131 2lk0_A RNA-binding protein 5; 54.1 5.6 0.00019 21.5 1.3 13 20-32 2-14 (32)
132 2kv1_A Methionine-R-sulfoxide 51.8 8.3 0.00028 27.7 2.3 31 20-50 17-49 (124)
133 2xzm_9 RPS31E; ribosome, trans 51.6 9.8 0.00033 29.3 2.9 28 4-33 114-141 (189)
134 3a43_A HYPD, hydrogenase nicke 50.0 4.3 0.00015 29.6 0.6 23 13-35 60-82 (139)
135 2k8d_A Peptide methionine sulf 49.4 11 0.00039 27.9 2.8 32 19-50 57-90 (151)
136 2kao_A Methionine-R-sulfoxide 49.3 15 0.00051 26.4 3.3 32 19-50 16-49 (124)
137 1mzb_A Ferric uptake regulatio 49.0 6.7 0.00023 27.9 1.5 12 23-34 91-102 (136)
138 4hc9_A Trans-acting T-cell-spe 48.3 5.2 0.00018 28.3 0.7 31 4-34 6-37 (115)
139 2l1u_A MSRB2, methionine-R-sul 48.2 11 0.00037 27.8 2.5 32 19-50 33-66 (143)
140 3p2a_A Thioredoxin 2, putative 48.0 6.3 0.00022 27.6 1.2 33 4-36 6-38 (148)
141 2w7n_A TRFB transcriptional re 47.7 6.7 0.00023 27.1 1.2 43 131-173 10-54 (101)
142 2i5o_A DNA polymerase ETA; zin 47.6 4.5 0.00015 23.1 0.3 23 22-44 8-30 (39)
143 3mao_A Methionine-R-sulfoxide 46.8 8.5 0.00029 26.9 1.6 32 19-50 9-42 (105)
144 2j6a_A Protein TRM112; transla 46.0 4.2 0.00015 29.9 -0.0 18 17-34 103-120 (141)
145 2fe3_A Peroxide operon regulat 45.9 8 0.00027 27.8 1.5 12 23-34 93-104 (145)
146 3bvo_A CO-chaperone protein HS 45.6 8.6 0.0003 29.8 1.7 28 4-34 11-38 (207)
147 3cxk_A Methionine-R-sulfoxide 45.3 10 0.00035 28.5 2.0 32 19-50 69-102 (164)
148 3p8b_A DNA-directed RNA polyme 45.1 6.1 0.00021 26.3 0.6 10 2-11 22-31 (81)
149 2ctt_A DNAJ homolog subfamily 44.9 12 0.0004 25.5 2.1 9 4-12 46-54 (104)
150 3hcj_A MSRB, peptide methionin 44.8 11 0.00038 28.0 2.1 31 19-49 46-78 (154)
151 3e0o_A Peptide methionine sulf 44.5 12 0.00042 27.5 2.3 32 19-50 38-71 (144)
152 1ryq_A DNA-directed RNA polyme 44.2 5.9 0.0002 25.6 0.5 19 4-30 12-30 (69)
153 1vfy_A Phosphatidylinositol-3- 43.9 20 0.0007 22.7 3.1 29 2-34 10-38 (73)
154 1y07_A Desulfoferrodoxin (RBO) 43.8 11 0.00038 27.0 2.0 29 4-35 8-37 (128)
155 3irb_A Uncharacterized protein 43.7 11 0.00038 27.4 2.0 23 4-32 48-70 (145)
156 1sfu_A 34L protein; protein/Z- 43.6 28 0.00095 22.7 3.7 26 112-137 32-57 (75)
157 2xig_A Ferric uptake regulatio 43.4 9.2 0.00031 27.8 1.5 12 23-34 99-110 (150)
158 2olm_A Nucleoporin-like protei 43.4 8.4 0.00029 28.2 1.2 29 4-32 26-54 (140)
159 3eyy_A Putative iron uptake re 43.4 9.6 0.00033 27.5 1.6 12 23-34 90-101 (145)
160 1vd4_A Transcription initiatio 43.0 7.1 0.00024 23.3 0.7 30 5-34 16-50 (62)
161 2w57_A Ferric uptake regulatio 43.0 9.4 0.00032 27.7 1.5 12 23-34 90-101 (150)
162 3dwd_A ADP-ribosylation factor 42.9 9 0.00031 28.3 1.3 30 4-33 39-68 (147)
163 3v2d_5 50S ribosomal protein L 42.5 12 0.0004 23.4 1.6 22 4-32 31-52 (60)
164 2owa_A Arfgap-like finger doma 42.5 7.9 0.00027 28.3 1.0 29 4-32 37-65 (138)
165 2iqj_A Stromal membrane-associ 42.3 8 0.00027 28.1 1.0 29 4-32 28-56 (134)
166 2k1p_A Zinc finger RAN-binding 42.2 9.6 0.00033 20.7 1.1 13 20-32 3-15 (33)
167 3mwm_A ZUR, putative metal upt 42.1 10 0.00034 27.2 1.5 12 23-34 87-98 (139)
168 2kdx_A HYPA, hydrogenase/ureas 41.7 17 0.00059 25.3 2.7 25 4-32 74-99 (119)
169 2jox_A Churchill protein; zinc 41.2 18 0.00062 25.0 2.6 35 4-38 27-72 (106)
170 1kbe_A Kinase suppressor of RA 41.1 16 0.00055 21.7 2.1 26 4-36 15-40 (49)
171 3hcg_A Peptide methionine sulf 41.0 11 0.00039 27.7 1.7 32 19-50 39-72 (146)
172 2o03_A Probable zinc uptake re 40.8 11 0.00037 26.6 1.5 13 22-34 82-94 (131)
173 2p57_A GTPase-activating prote 40.4 6.9 0.00023 28.9 0.4 29 4-32 38-66 (144)
174 4ets_A Ferric uptake regulatio 40.3 11 0.00037 27.8 1.5 12 23-34 107-118 (162)
175 1f5q_B Gamma herpesvirus cycli 40.2 88 0.003 24.5 7.0 65 108-172 149-231 (252)
176 1ptq_A Protein kinase C delta 39.3 26 0.0009 20.0 2.9 31 2-35 10-40 (50)
177 2enz_A NPKC-theta, protein kin 39.2 30 0.001 21.2 3.3 34 2-39 22-56 (65)
178 2jrr_A Uncharacterized protein 38.9 15 0.00053 23.4 1.8 16 19-34 36-51 (67)
179 2crw_A ARF GAP 3, ADP-ribosyla 38.4 8.9 0.00031 28.4 0.7 29 4-32 30-58 (149)
180 3lcz_A YCZA, inhibitor of trap 38.1 13 0.00044 22.5 1.3 21 4-30 10-30 (53)
181 2crr_A Stromal membrane-associ 38.1 9 0.00031 28.0 0.7 29 4-32 30-58 (141)
182 2gnr_A Conserved hypothetical 38.0 17 0.00058 26.5 2.2 23 4-32 48-70 (145)
183 3j21_e 50S ribosomal protein L 37.0 14 0.00047 23.3 1.3 25 2-31 16-40 (62)
184 3c5k_A HD6, histone deacetylas 35.7 24 0.00083 24.5 2.6 25 4-36 25-49 (109)
185 2l8e_A Polyhomeotic-like prote 34.7 14 0.00048 22.1 1.1 21 14-34 9-29 (49)
186 2da7_A Zinc finger homeobox pr 34.3 29 0.001 22.4 2.6 19 110-128 33-51 (71)
187 2w0t_A Lethal(3)malignant brai 34.0 19 0.00065 21.0 1.5 15 19-33 2-16 (43)
188 4ayb_P DNA-directed RNA polyme 33.0 23 0.0008 21.0 1.8 32 1-32 1-32 (48)
189 3sub_A ADP-ribosylation factor 32.9 14 0.00047 27.8 1.0 29 4-32 23-51 (163)
190 1tc3_C Protein (TC3 transposas 32.8 14 0.00047 20.2 0.8 19 156-174 24-42 (51)
191 1wd2_A Ariadne-1 protein homol 32.8 17 0.00058 22.4 1.2 28 4-33 7-36 (60)
192 1vq8_1 50S ribosomal protein L 32.6 15 0.0005 22.8 0.9 24 3-31 17-40 (57)
193 2f9y_B Acetyl-coenzyme A carbo 32.5 12 0.0004 30.8 0.6 27 4-33 25-53 (304)
194 1rqg_A Methionyl-tRNA syntheta 31.9 24 0.00081 32.4 2.6 23 5-34 142-164 (722)
195 2yw8_A RUN and FYVE domain-con 31.7 38 0.0013 21.9 2.9 29 4-36 20-48 (82)
196 3uej_A NPKC-delta, protein kin 30.4 42 0.0014 20.5 2.9 31 3-36 20-50 (65)
197 2jvm_A Uncharacterized protein 30.4 24 0.00081 23.4 1.7 22 13-34 41-64 (80)
198 1wi3_A DNA-binding protein SAT 30.3 91 0.0031 20.0 4.4 25 104-128 21-54 (71)
199 2pmi_B PHO85 cyclin PHO80, ami 30.3 75 0.0026 26.0 5.1 65 108-172 77-157 (293)
200 2bx9_A Anti-trap, AT, tryptoph 30.1 26 0.0009 21.1 1.8 21 4-30 10-30 (53)
201 2m0f_A Zinc finger and BTB dom 29.7 26 0.00091 16.1 1.5 11 23-33 2-12 (29)
202 1j9i_A GPNU1 DBD;, terminase s 29.5 9.2 0.00031 23.7 -0.4 17 157-173 6-22 (68)
203 2ppt_A Thioredoxin-2; thiredox 29.1 14 0.00049 26.3 0.5 29 4-32 15-43 (155)
204 4cpa_I Metallocarboxypeptidase 28.8 12 0.00041 20.8 0.0 22 7-29 6-27 (38)
205 2b5b_A Defensin; antibiotic; N 28.5 23 0.00079 19.1 1.1 19 9-27 12-30 (36)
206 3hug_A RNA polymerase sigma fa 28.0 30 0.001 22.4 1.9 18 156-173 56-73 (92)
207 1dvp_A HRS, hepatocyte growth 27.6 46 0.0016 25.5 3.2 31 3-37 161-191 (220)
208 2qkd_A Zinc finger protein ZPR 27.5 39 0.0013 29.0 3.0 30 4-33 221-259 (404)
209 2yuu_A NPKC-delta, protein kin 27.2 48 0.0017 21.4 2.9 35 3-40 28-62 (83)
210 2gmg_A Hypothetical protein PF 27.2 24 0.00083 24.5 1.4 10 24-33 68-77 (105)
211 2eli_A Protein kinase C alpha 27.0 50 0.0017 21.5 2.9 35 3-40 28-62 (85)
212 1joc_A EEA1, early endosomal a 26.8 44 0.0015 23.5 2.8 29 4-36 70-98 (125)
213 1qbj_A Protein (double-strande 26.8 72 0.0024 20.6 3.6 26 112-137 30-55 (81)
214 3o47_A ADP-ribosylation factor 26.7 18 0.00061 29.5 0.7 29 4-32 38-66 (329)
215 1twf_J DNA-directed RNA polyme 26.7 16 0.00056 23.5 0.4 12 24-35 5-16 (70)
216 1z2q_A LM5-1; membrane protein 26.5 54 0.0018 21.3 3.0 29 4-36 22-50 (84)
217 4glx_A DNA ligase; inhibitor, 26.2 36 0.0012 30.6 2.7 34 4-39 406-442 (586)
218 2owo_A DNA ligase; protein-DNA 25.8 42 0.0014 30.7 3.1 34 4-39 406-442 (671)
219 2g45_A Ubiquitin carboxyl-term 25.8 48 0.0016 23.7 2.8 21 5-33 36-56 (129)
220 2enn_A NPKC-theta, protein kin 25.5 46 0.0016 21.2 2.5 34 3-39 34-67 (77)
221 3v2d_Y 50S ribosomal protein L 25.1 48 0.0017 23.1 2.6 31 4-34 74-107 (110)
222 3t7l_A Zinc finger FYVE domain 24.9 54 0.0018 21.6 2.8 29 4-36 21-49 (90)
223 1qgp_A Protein (double strande 24.5 92 0.0032 19.7 3.8 26 112-137 34-59 (77)
224 3h99_A Methionyl-tRNA syntheta 24.4 23 0.00079 31.2 1.0 10 157-166 513-522 (560)
225 1zbd_B Rabphilin-3A; G protein 24.4 50 0.0017 23.7 2.7 11 23-33 80-90 (134)
226 2x48_A CAG38821; archeal virus 24.4 22 0.00074 20.5 0.6 18 156-173 34-51 (55)
227 1m2k_A Silent information regu 24.4 15 0.00052 29.0 -0.1 34 4-41 122-160 (249)
228 1l8d_A DNA double-strand break 24.4 23 0.00078 24.1 0.8 7 5-11 49-55 (112)
229 1y8f_A UNC-13 homolog A, MUNC1 24.3 49 0.0017 20.3 2.4 32 3-37 24-55 (66)
230 1wge_A Hypothetical protein 26 24.1 44 0.0015 22.1 2.2 27 5-34 32-63 (83)
231 1oyi_A Double-stranded RNA-bin 23.9 90 0.0031 20.4 3.7 28 110-137 31-58 (82)
232 1x4u_A Zinc finger, FYVE domai 23.9 74 0.0025 20.5 3.3 29 4-36 15-43 (84)
233 3e0m_A Peptide methionine sulf 23.7 36 0.0012 28.2 2.0 32 19-50 205-238 (313)
234 2k2d_A Ring finger and CHY zin 23.5 17 0.00059 23.8 0.0 10 24-33 38-47 (79)
235 1jko_C HIN recombinase, DNA-in 23.2 19 0.00063 20.0 0.1 19 156-174 24-42 (52)
236 2l8n_A Transcriptional repress 23.0 13 0.00045 23.3 -0.6 19 156-174 12-30 (67)
237 2qsb_A UPF0147 protein TA0600; 22.9 1.8E+02 0.006 19.5 5.3 61 102-167 9-72 (89)
238 3zyq_A Hepatocyte growth facto 22.6 61 0.0021 25.1 3.1 30 4-37 165-194 (226)
239 1faq_A RAF-1; transferase, ser 22.4 62 0.0021 18.5 2.5 30 3-39 14-43 (52)
240 2f9i_B Acetyl-coenzyme A carbo 21.8 18 0.00063 29.4 -0.1 34 4-41 31-74 (285)
241 1dcq_A PYK2-associated protein 21.7 32 0.0011 26.9 1.3 28 3-30 17-44 (278)
242 3lju_X ARF-GAP with dual PH do 21.7 29 0.00099 29.2 1.1 30 4-33 35-64 (386)
243 3mhs_E SAGA-associated factor 21.6 57 0.002 22.2 2.3 22 20-41 72-93 (96)
244 1uxc_A FRUR (1-57), fructose r 21.3 15 0.00051 22.9 -0.6 18 157-174 4-21 (65)
245 2csz_A Synaptotagmin-like prot 21.2 28 0.00095 22.8 0.7 28 4-33 26-60 (76)
246 1ufm_A COP9 complex subunit 4; 21.2 1.1E+02 0.0036 19.9 3.7 26 112-137 33-58 (84)
247 2jpc_A SSRB; DNA binding prote 20.7 1E+02 0.0035 17.6 3.3 17 112-128 16-32 (61)
248 2lo3_A SAGA-associated factor 20.7 32 0.0011 19.9 0.8 22 18-39 12-33 (44)
249 3jue_A Arfgap with coiled-coil 20.5 35 0.0012 28.3 1.3 29 4-32 46-74 (368)
250 1wfk_A Zinc finger, FYVE domai 20.4 80 0.0028 20.7 2.9 29 4-36 10-38 (88)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=6e-48 Score=330.90 Aligned_cols=176 Identities=27% Similarity=0.445 Sum_probs=157.5
Q ss_pred CCCCCCCCC-CCceeEeCCCCceEeCCCceeeeCCCcccccccccccCCC-CCCCCccccCCCCccccCCCCceEEecCC
Q 030129 3 DAFCSDCKK-HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKPN 80 (182)
Q Consensus 3 ~~~Cp~Cg~-~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~sr~G~~~~~~~~~~gl~T~i~~~~ 80 (182)
..+||+||+ .+++++|+.+|++||++||+||+|++||+|||||+|++++ ++.|++|+|+|.||++||.||+|.|++++
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~ 100 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCS
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCC
Confidence 357999996 4689999999999999999999999999999999999864 46789999999999999999999999765
Q ss_pred CCCCccccccccccccCC--CCchHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHH
Q 030129 81 GASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLV 151 (182)
Q Consensus 81 ~~~~~~l~~~l~~~q~~~--~~~er~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~a 151 (182)
++.+ ....+|++||+++ +++||+|..||++|.+||++|+||+.++++ .||+++.++ + +.++++|||||+|
T Consensus 101 ~~~~-~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiA 179 (345)
T 4bbr_M 101 TTDM-RFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIG 179 (345)
T ss_dssp SCCH-HHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHH
T ss_pred Ccch-hhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence 4331 1234688999864 789999999999999999999999999999 999999887 4 8999999999999
Q ss_pred HhhCC-----HHHHHhcCCCceeeeceeeehhc
Q 030129 152 DKKTS-----HALLRKSALSPMELQRRKLAEQK 179 (182)
Q Consensus 152 cr~~~-----~eia~~~~v~~~~i~r~~~~~~~ 179 (182)
||+++ +||+++++|++++|||.|...++
T Consensus 180 CR~~~~prtl~eI~~~~~v~~keigr~~k~l~~ 212 (345)
T 4bbr_M 180 CRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKN 212 (345)
T ss_dssp HHHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99995 99999999999999999988765
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-44 Score=307.91 Aligned_cols=174 Identities=28% Similarity=0.444 Sum_probs=144.8
Q ss_pred CCCCCCCCCCC-ceeEeCCCCceEeCCCceeeeCCCcccccccccccCCC-CCCCCccccCCCCccccCCCCceEEecC-
Q 030129 3 DAFCSDCKKHT-EVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLADGGLSTVIAKP- 79 (182)
Q Consensus 3 ~~~Cp~Cg~~~-~iv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~sr~G~~~~~~~~~~gl~T~i~~~- 79 (182)
.++||+||+.+ ++++|+.+|++||++||+|++|++||++||||+|++++ ++.+++|+|+|.+|++|+.|++|.|+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~ 100 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGE 100 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTT
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCC
Confidence 46799999832 69999999999999999999999999999999999853 3568999999999999999999999875
Q ss_pred -CCCCCccccccccccccC--CCCchHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHH
Q 030129 80 -NGASGEFLSSSLGRWQNR--GSNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTL 149 (182)
Q Consensus 80 -~~~~~~~l~~~l~~~q~~--~~~~er~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY 149 (182)
+++.| ..+|++||++ .+++||+|.+|++.|.++++.|+||+.++++ .||+++.++ + +.+.++|||||
T Consensus 101 ~~~~~~---~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAcly 177 (345)
T 3k7a_M 101 TTDMRF---TKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177 (345)
T ss_dssp SCCHHH---HHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTT
T ss_pred CCCchh---hhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHH
Confidence 33333 2358899875 4899999999999999999999999999999 999999887 4 89999999999
Q ss_pred HHHhhCC-----HHHHHhcCCCceeeeceeeehhc
Q 030129 150 LVDKKTS-----HALLRKSALSPMELQRRKLAEQK 179 (182)
Q Consensus 150 ~acr~~~-----~eia~~~~v~~~~i~r~~~~~~~ 179 (182)
+|||+++ +||++++++++++||+.|..+.+
T Consensus 178 iAcR~e~~prtl~ei~~~~~v~~keIgr~~~~l~~ 212 (345)
T 3k7a_M 178 IGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKN 212 (345)
T ss_dssp TTSBTTBSSCCHHHHHHSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHcCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999984 99999999999999999987665
No 3
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.8e-22 Score=152.56 Aligned_cols=66 Identities=33% Similarity=0.617 Sum_probs=58.5
Q ss_pred CCCCCCCCCC-CceeEeCCCCceEeCCCceeeeCCCcccccccccccCCC-CCCCCccccCCCCcccc
Q 030129 3 DAFCSDCKKH-TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES-GDNDPVRVGGPTNPLLA 68 (182)
Q Consensus 3 ~~~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~~-~~~~~sr~G~~~~~~~~ 68 (182)
..+||+|++. +++++|+++|++||.+||+||+|++||.|||||+|++++ ++.+++|+|+|.++...
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRVGAPs~~~~~ 88 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXXXXXXXXXXX 88 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCCBCCBCCHHH
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCceeECCCCCcCcCCcccccccccccccccccccc
Confidence 4579999972 479999999999999999999999999999999999864 36789999999987664
No 4
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=99.79 E-value=6.1e-20 Score=118.71 Aligned_cols=47 Identities=45% Similarity=0.834 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCcccccccccccCC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE 50 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~~~ 50 (182)
.+.||+|++ ..+++|+++|++||.+||+|++|++||.|||||+|+++
T Consensus 11 ~~~Cp~C~~-~~lv~D~~~ge~vC~~CGlVl~e~~iD~gpEWR~F~~~ 57 (58)
T 1dl6_A 11 RVTCPNHPD-AILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSND 57 (58)
T ss_dssp CCSBTTBSS-SCCEECSSSCCEECTTTCCEECCSCCCCCCSCCCSCCC
T ss_pred cccCcCCCC-CceeEeCCCCeEEeCCCCCEEeccccccCCcccccCCC
Confidence 357999998 57999999999999999999999999999999999975
No 5
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=99.67 E-value=4.6e-17 Score=102.09 Aligned_cols=44 Identities=39% Similarity=0.989 Sum_probs=41.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCccccccccccc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFA 48 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~ewr~f~ 48 (182)
..||.|++ ..+++|+++|++||..||+|++++.||.+||||+|+
T Consensus 6 ~~CP~C~~-~~l~~d~~~gelvC~~CG~v~~e~~id~~~ewr~f~ 49 (50)
T 1pft_A 6 KVCPACES-AELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFD 49 (50)
T ss_dssp CSCTTTSC-CCEEEETTTTEEEESSSCCBCCCCCCCCCSSSSCCC
T ss_pred EeCcCCCC-cceEEcCCCCeEECcccCCcccccccccCCcccccC
Confidence 57999997 589999999999999999999999999999999997
No 6
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.56 E-value=2.5e-15 Score=118.65 Aligned_cols=81 Identities=10% Similarity=0.153 Sum_probs=70.9
Q ss_pred CCchHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHHHhhCC-----HHHHHhcCCC
Q 030129 99 SNPDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTS-----HALLRKSALS 166 (182)
Q Consensus 99 ~~~er~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~acr~~~-----~eia~~~~v~ 166 (182)
+++||+|.+|++.|.++|++|+||+.+.+. .+|+++.++ + ++..++|||||+|||+++ +||+++++++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~ 82 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCC
Confidence 578999999999999999999999999999 999999887 3 999999999999999984 9999999999
Q ss_pred ceeeeceeeehhc
Q 030129 167 PMELQRRKLAEQK 179 (182)
Q Consensus 167 ~~~i~r~~~~~~~ 179 (182)
+++||+.|....+
T Consensus 83 ~~~i~~~~~~l~~ 95 (200)
T 1ais_B 83 KKEIGRSYRFIAR 95 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876554
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.40 E-value=2.9e-13 Score=107.36 Aligned_cols=79 Identities=27% Similarity=0.294 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCce
Q 030129 101 PDRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-----HALLRKSALSPM 168 (182)
Q Consensus 101 ~er~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~-----~eia~~~~v~~~ 168 (182)
+||+|.+|++.|.++|.+|+||+.+.++ .+|+++.++ + ++..++|||||+|||.++ +||+.+++++++
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 80 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHH
Confidence 4899999999999999999999999999 999999876 4 999999999999999984 999999999999
Q ss_pred eeeceeeehhc
Q 030129 169 ELQRRKLAEQK 179 (182)
Q Consensus 169 ~i~r~~~~~~~ 179 (182)
+|++.|..+-+
T Consensus 81 ~i~~~~~~ll~ 91 (207)
T 1c9b_A 81 EIGRCFKLILK 91 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.95 E-value=5.9e-10 Score=87.59 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCceeeecee
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTS-----HALLRKSALSPMELQRRK 174 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~i~r~~ 174 (182)
....+|.++++.|+|++.+.+. .|++.+.+. + +|..+||||||+||+..+ +||+++++|++.||.++|
T Consensus 107 ~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~ 186 (200)
T 1ais_B 107 KPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRY 186 (200)
T ss_dssp CGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 3668999999999999998888 999999876 3 999999999999999984 899999999999999887
Q ss_pred eehh
Q 030129 175 LAEQ 178 (182)
Q Consensus 175 ~~~~ 178 (182)
-...
T Consensus 187 ~~l~ 190 (200)
T 1ais_B 187 KELV 190 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 9
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.79 E-value=6.1e-09 Score=82.25 Aligned_cols=72 Identities=3% Similarity=-0.027 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCceeeecee
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTS-----HALLRKSALSPMELQRRK 174 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~i~r~~ 174 (182)
..+++|.++++.|++++.+.+. .+++.+.+. + +|..+||||||+||+..+ .||+++++|++.||.++|
T Consensus 101 ~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~ 180 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSY 180 (207)
T ss_dssp CTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 4678999999999999988777 999988766 2 999999999999999874 799999999999999987
Q ss_pred eehh
Q 030129 175 LAEQ 178 (182)
Q Consensus 175 ~~~~ 178 (182)
-...
T Consensus 181 ~~l~ 184 (207)
T 1c9b_A 181 RLIY 184 (207)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 5543
No 10
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.57 E-value=6.8e-09 Score=88.60 Aligned_cols=71 Identities=4% Similarity=-0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCceeeece
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTS-----HALLRKSALSPMELQRR 173 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~i~r~ 173 (182)
.....+|.++|+.|+|+..+... +|.+.+.+. + +|..|||||||+||+.++ +|||++++|++.||..+
T Consensus 233 ~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~r 312 (345)
T 4bbr_M 233 AQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 35667999999999999988777 888888776 4 999999999999999884 89999999999999998
Q ss_pred eee
Q 030129 174 KLA 176 (182)
Q Consensus 174 ~~~ 176 (182)
|--
T Consensus 313 yke 315 (345)
T 4bbr_M 313 YKI 315 (345)
T ss_dssp ---
T ss_pred HHH
Confidence 843
No 11
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.6e-08 Score=83.30 Aligned_cols=69 Identities=4% Similarity=-0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-c----CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCceeeecee
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-I----KTHYWLLACTLLVDKKTS-----HALLRKSALSPMELQRRK 174 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l----~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~i~r~~ 174 (182)
....+|.++|+.|+|+..+... .|.+.+.+. + +|..|||||||+|++..+ +||+++++|++.||..+|
T Consensus 234 ~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3467788999999999888777 888888665 3 999999999999999873 899999999999999876
Q ss_pred e
Q 030129 175 L 175 (182)
Q Consensus 175 ~ 175 (182)
-
T Consensus 314 k 314 (345)
T 3k7a_M 314 K 314 (345)
T ss_dssp -
T ss_pred H
Confidence 4
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.97 E-value=1.3e-05 Score=64.16 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c----CHHHHHHHHHHHHHhhCC-----HHHHHhc--------
Q 030129 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I----KTHYWLLACTLLVDKKTS-----HALLRKS-------- 163 (182)
Q Consensus 105 L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l----~~~~v~AAclY~acr~~~-----~eia~~~-------- 163 (182)
...+.+.|.+++..|+||+.+... .+|++.... + ++..+++||||+|||.+. +||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 567999999999999999999988 999998765 3 689999999999999883 7777655
Q ss_pred CCCceeeeceee
Q 030129 164 ALSPMELQRRKL 175 (182)
Q Consensus 164 ~v~~~~i~r~~~ 175 (182)
..+.++|++..+
T Consensus 108 ~~~~~~I~~~E~ 119 (235)
T 1zp2_A 108 KLSRSNISEIEF 119 (235)
T ss_dssp CCCHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 456666665543
No 13
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.36 E-value=0.00054 Score=55.32 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC-----HHHHHhc
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-----HALLRKS 163 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~-----~eia~~~ 163 (182)
..+.+.|.+++..|+||+.+... .+|++.... + ++..+++||||+||+.+. .||..++
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 45899999999999999999888 999998765 4 999999999999999884 6776544
No 14
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.33 E-value=0.00076 Score=54.33 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC-----HHHHHh
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-----HALLRK 162 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~-----~eia~~ 162 (182)
..+.+.|.+++..|+||+.+... .+|++.... + ++..+++||||+||+.+. +||..+
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~ 110 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKT 110 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHH
Confidence 46899999999999999999888 999998765 4 899999999999999883 666654
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.29 E-value=0.00088 Score=56.24 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=52.7
Q ss_pred chHHHHH-HHHHHHHHHHHhC--ChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC-----HHHHHhcC
Q 030129 101 PDRGLIL-AFKTIATMSDRIG--QMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-----HALLRKSA 164 (182)
Q Consensus 101 ~er~L~~-a~~~I~~i~~~L~--L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~-----~eia~~~~ 164 (182)
.|+.+.. +.+.|.+++..|+ ||+.+... .+|++.... + ++..|++||||+||+.+. .||+.++.
T Consensus 52 eE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~ 130 (323)
T 1jkw_A 52 EEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR 130 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc
Confidence 3566644 6799999999999 99999888 999998765 4 999999999999999884 56665543
No 16
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.25 E-value=0.0009 Score=55.12 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred chHHH-HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhC
Q 030129 101 PDRGL-ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKT 155 (182)
Q Consensus 101 ~er~L-~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~ 155 (182)
.++.+ ..+.+.|.+++..|+||+.+... .+|++.... + ++..|++||||+||+.+
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~E 100 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVE 100 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhh
Confidence 34444 45899999999999999999888 899998765 4 99999999999999987
No 17
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.12 E-value=0.00073 Score=57.58 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC-----HHHHHh
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS-----HALLRK 162 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~-----~eia~~ 162 (182)
..+.+.|.+++..|+||+.+... .+|++.... + ++..|++||||+||+.+. +||..+
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v 107 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKV 107 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 45899999999999999999888 899998765 4 999999999999999884 566544
No 18
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=96.85 E-value=0.0012 Score=43.46 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
....||.|++ .+.++...|.++|..||++..
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKG--RLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCC--BEEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCC--cCEEeCCCCEEEcCCCCceec
Confidence 3457999996 688898999999999999864
No 19
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=96.77 E-value=0.00058 Score=44.23 Aligned_cols=30 Identities=33% Similarity=0.801 Sum_probs=27.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.+||.|+. ..+|+++++-...|..||.+|-
T Consensus 8 VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 8 VKCPDCEH-EQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EECTTTCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-ceEEEecCceEEEcccCCCEEe
Confidence 57999997 6899999999999999999995
No 20
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=96.76 E-value=0.0014 Score=42.89 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
....||.|++ .+.++...|.++|..||++..
T Consensus 7 ~iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKG--RLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCC--BCEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 3457999996 688898999999999999863
No 21
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=96.75 E-value=0.0015 Score=42.67 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
...||.|++ .+.++..+|.++|..||+...
T Consensus 10 iL~CP~ck~--~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACPKDKG--PLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCTTTCC--BCEEETTTTEEEETTTTEEEE
T ss_pred HhCCCCCCC--cCeEeCCCCEEEcCCCCcccc
Confidence 357999996 688899999999999999863
No 22
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.71 E-value=0.00079 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=26.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
..||.||+ +.++++..|...|..||.++.-
T Consensus 28 y~Cp~CG~--~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 28 HACPNCGE--DRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp EECSSSCC--EEEEEEETTEEEETTTCCEEEC
T ss_pred CcCCCCCC--cceeccCCCeEECCCCCCEecC
Confidence 46999996 5789999999999999999753
No 23
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=96.59 E-value=0.0015 Score=42.95 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
...||.|++ .+.++...|.++|..||++..
T Consensus 8 iL~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 8 ILACPICKG--PLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp TCCCTTTCC--CCEECTTSSEEEETTTTEEEE
T ss_pred heeCCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 357999996 578888899999999999864
No 24
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=96.58 E-value=0.0018 Score=42.44 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=25.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..||.|++ .+.++...|.++|..||++..
T Consensus 9 L~CP~ck~--~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKG--PLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCC--BCEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCC--cCeEeCCCCEEEcCCCCcEec
Confidence 57999996 688888999999999999863
No 25
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.57 E-value=0.0012 Score=42.36 Aligned_cols=30 Identities=37% Similarity=0.777 Sum_probs=27.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.+||.|+. ..+|+++.+-...|..||.+|-
T Consensus 16 VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 16 VKCIDCGN-EQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EECSSSCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccCcCCEEe
Confidence 47999997 6899999999999999999995
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.51 E-value=0.0063 Score=49.51 Aligned_cols=70 Identities=3% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC------HHHHHhcC--CCceee
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS------HALLRKSA--LSPMEL 170 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~------~eia~~~~--v~~~~i 170 (182)
....+.|.+++..++|++.+... .++++.... + +...+++||||+||+.+. .||...++ .+..+|
T Consensus 39 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 39 AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 45788999999999999888777 888888776 4 899999999999999862 67777664 466666
Q ss_pred eceee
Q 030129 171 QRRKL 175 (182)
Q Consensus 171 ~r~~~ 175 (182)
.+..+
T Consensus 119 ~~mE~ 123 (269)
T 2b9r_A 119 RQMEM 123 (269)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 27
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=96.37 E-value=0.0013 Score=44.23 Aligned_cols=31 Identities=19% Similarity=0.755 Sum_probs=27.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
.+||.|+. ..+|+++++-...|..||.||-+
T Consensus 33 VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCAQCQN-IQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EECSSSCC-EEEEETTCSSCEECSSSCCEEEE
T ss_pred eECCCCCC-eeEEEecCccEEEccCCCCEEee
Confidence 47999997 68999999999999999999953
No 28
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=96.20 E-value=0.0015 Score=44.03 Aligned_cols=31 Identities=26% Similarity=0.675 Sum_probs=28.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
.+||.|+. ..+|+.+++-.+.|..||.||-+
T Consensus 35 VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCPGCLN-ITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp EECTTSCS-CEEEESBCSSCCCCSSSCCCCEE
T ss_pred EECCCCCC-eeEEEecCCeEEEccccCCEEec
Confidence 47999997 78999999999999999999953
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.17 E-value=0.011 Score=47.69 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC------HHHHHhcC--CCcee
Q 030129 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS------HALLRKSA--LSPME 169 (182)
Q Consensus 105 L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~------~eia~~~~--v~~~~ 169 (182)
-..+.+.|-+++..++|+..+.-. .++++.... + +...+++||||+||+.+. .||..+.+ .+..+
T Consensus 39 R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 356889999999999999887777 888887665 4 889999999999999873 67776654 45555
Q ss_pred eece
Q 030129 170 LQRR 173 (182)
Q Consensus 170 i~r~ 173 (182)
|.+.
T Consensus 119 i~~m 122 (260)
T 2cch_B 119 VLRM 122 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.12 E-value=0.006 Score=49.62 Aligned_cols=69 Identities=10% Similarity=-0.116 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHHh-c-c---CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCceeeecee
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEA-E-I---KTHYWLLACTLLVDKKTS-----HALLRKSALSPMELQRRK 174 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~-~-l---~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~i~r~~ 174 (182)
..++.|.+++..++++..+... .+...+.. . + +|..+||||||+|++..+ .+++.++|+++.+|-..+
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~ 216 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVM 216 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 3567889999999988776655 55565543 2 3 999999999999998753 788999999998887654
Q ss_pred e
Q 030129 175 L 175 (182)
Q Consensus 175 ~ 175 (182)
-
T Consensus 217 ~ 217 (269)
T 2b9r_A 217 Q 217 (269)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.98 E-value=0.013 Score=48.11 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCChHHHHHH--HHHHHHHhc---c--CHHHHHHHHHHHHHhhCC---HHHHHhcCCCceeeec
Q 030129 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTS---HALLRKSALSPMELQR 172 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~---l--~~~~v~AAclY~acr~~~---~eia~~~~v~~~~i~r 172 (182)
.++.|.+++..|+++..+... .+...+... + .|..|||||||+|++..+ ...-+.++++..+|..
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~~~~~~~~~l~~ 231 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILE 231 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHTSCSCHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChhhHHHHHCCCHHHHHH
Confidence 467899999999998877666 665555433 2 999999999999999875 4556677777666543
No 32
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.83 E-value=0.0074 Score=37.01 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=21.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
..||.||+ ..+..+ ......|..||.+.
T Consensus 20 k~CP~CG~-~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGP-GVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCS-SCEEEE-CSSEEECSSSCCEE
T ss_pred ccCCCCCC-ceEEec-CCCeEECCCCCCEE
Confidence 46999997 555554 45789999999874
No 33
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=95.77 E-value=0.016 Score=46.01 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCChHHHHHH--HHHHHHHhc---c--CHHHHHHHHHHHHHhhCCH
Q 030129 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTSH 157 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~---l--~~~~v~AAclY~acr~~~~ 157 (182)
.++.|.+++..++++..+... .+...+... + +|..|||||||+|++..+.
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 567889999999998877666 666666433 2 9999999999999998864
No 34
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.71 E-value=0.0035 Score=42.62 Aligned_cols=30 Identities=37% Similarity=0.666 Sum_probs=27.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.+||.|+. ..+|+.+++-.+.|..||.||-
T Consensus 37 VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 37 VKCQGCFN-ITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp EECTTTCC-EEEEETTCSSCCCCSSSCCCCS
T ss_pred EECCCCCC-eeEEEecCCcEEEccCCCCEee
Confidence 57999997 6899999999999999999995
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=95.53 E-value=0.027 Score=45.63 Aligned_cols=69 Identities=9% Similarity=0.051 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC------HHHHHhcC--CCcee
Q 030129 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS------HALLRKSA--LSPME 169 (182)
Q Consensus 105 L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~------~eia~~~~--v~~~~ 169 (182)
-..+.+.|.+++..++|+..+.-. .++++.... + +...+++||||+||+.+. .|++..++ .+..+
T Consensus 57 R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 57 RKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 346788899999999998776655 888887765 4 899999999999999873 57776654 45555
Q ss_pred eece
Q 030129 170 LQRR 173 (182)
Q Consensus 170 i~r~ 173 (182)
|.+.
T Consensus 137 I~~m 140 (271)
T 2w96_A 137 LLQM 140 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=95.12 E-value=0.026 Score=45.74 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCChHHHHH----H--HHHHHHH-hc-c---CHHHHHHHHHHHHHhhCC--------------HHHHH
Q 030129 107 LAFKTIATMSDRIGQMRYIRR----W--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTS--------------HALLR 161 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~----~--~i~k~a~-~~-l---~~~~v~AAclY~acr~~~--------------~eia~ 161 (182)
..+++|.++...++++....+ . .+...+. +. + +|..+||||||+|++..+ .+++.
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 366788899999999876532 2 4444443 22 3 999999999999987531 46888
Q ss_pred hcCCCceeeecee
Q 030129 162 KSALSPMELQRRK 174 (182)
Q Consensus 162 ~~~v~~~~i~r~~ 174 (182)
++|+++.+|-..+
T Consensus 236 ~~~v~~~~l~~c~ 248 (271)
T 2w96_A 236 VIKCDPDCLRACQ 248 (271)
T ss_dssp HHTSCHHHHHHHH
T ss_pred HHCcCHHHHHHHH
Confidence 9999988876544
No 37
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=95.08 E-value=0.02 Score=46.12 Aligned_cols=70 Identities=10% Similarity=-0.036 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCChH-HHHHH--HHHHHHH-hc--c---CHHHHHHHHHHHHHhhC-----CHHHHHhcCCCceeeec
Q 030129 107 LAFKTIATMSDRIGQMR-YIRRW--KIKSLVE-AE--I---KTHYWLLACTLLVDKKT-----SHALLRKSALSPMELQR 172 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~-~v~~~--~i~k~a~-~~--l---~~~~v~AAclY~acr~~-----~~eia~~~~v~~~~i~r 172 (182)
..++.|.+++..++++. .+... .+...+. +. + +|..+||||||+|++.. ..+++.++|+++.+|-.
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~ 217 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKP 217 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHH
Confidence 46788999999999876 55444 5555543 32 2 99999999999999865 37889999999888766
Q ss_pred eeee
Q 030129 173 RKLA 176 (182)
Q Consensus 173 ~~~~ 176 (182)
.+-.
T Consensus 218 ~~~~ 221 (260)
T 2cch_B 218 CLMD 221 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5533
No 38
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.99 E-value=0.035 Score=44.63 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhCC------HHHHHhcC--CCcee
Q 030129 105 LILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKTS------HALLRKSA--LSPME 169 (182)
Q Consensus 105 L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~~------~eia~~~~--v~~~~ 169 (182)
-....+.|-+++..++|+..+.-. .++++.... + +...+++||+|+||+.+. .|++...+ .+..+
T Consensus 51 R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 51 RKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 345789999999999999887766 888888665 4 889999999999999652 67776654 35555
Q ss_pred eece
Q 030129 170 LQRR 173 (182)
Q Consensus 170 i~r~ 173 (182)
|.+.
T Consensus 131 i~~m 134 (257)
T 1g3n_C 131 LIDQ 134 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 39
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.58 E-value=0.091 Score=42.91 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc---c---CHHHHHHHHHHHHHhhCC------HHHHHhcC--CCcee
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE---I---KTHYWLLACTLLVDKKTS------HALLRKSA--LSPME 169 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~---l---~~~~v~AAclY~acr~~~------~eia~~~~--v~~~~ 169 (182)
....+.|.+++..++|+..+.-. .++++.... + +...+++||+|+||+.+. .|++.+.+ .+..+
T Consensus 51 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 51 AILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 45778899999999998877666 777776542 3 889999999999999872 67776653 45555
Q ss_pred eecee
Q 030129 170 LQRRK 174 (182)
Q Consensus 170 i~r~~ 174 (182)
|.+..
T Consensus 131 i~~mE 135 (283)
T 1w98_B 131 ILTME 135 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 40
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.40 E-value=0.02 Score=35.77 Aligned_cols=28 Identities=25% Similarity=0.651 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
+..||.||+ ..++. ...+...|..||+.
T Consensus 18 ~~fCPkCG~-~~~ma-~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGP-GVFLA-EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTT-TCCCE-ECSSEEECTTTCCC
T ss_pred cccCcCCCC-ceeEe-ccCCEEECCCCCCE
Confidence 467999997 44433 44578999999998
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=94.31 E-value=0.15 Score=35.35 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=40.9
Q ss_pred HHHHHHHhCChHHHHHH----HHHHHHH---hc----cCHHHHHHHHHHHHHhhCC-----HHHHHhcCCCcee
Q 030129 112 IATMSDRIGQMRYIRRW----KIKSLVE---AE----IKTHYWLLACTLLVDKKTS-----HALLRKSALSPME 169 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~----~i~k~a~---~~----l~~~~v~AAclY~acr~~~-----~eia~~~~v~~~~ 169 (182)
|+.+|-+||+++-+... ..|+... .. |+....+||++|.+||... .-+.+.+++++.+
T Consensus 6 v~dLcVqfgc~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~ 79 (95)
T 3m03_A 6 IRDLAVQFSCIEAVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAI 79 (95)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHH
Confidence 78899999999854333 6666531 11 4667899999999999983 3566667766543
No 42
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.06 E-value=0.063 Score=42.89 Aligned_cols=53 Identities=4% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCChHH----HHHH--HHHHHHHhc---c--CHHHHHHHHHHHHHhhCCHHH
Q 030129 107 LAFKTIATMSDRIGQMRY----IRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTSHAL 159 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~----v~~~--~i~k~a~~~---l--~~~~v~AAclY~acr~~~~ei 159 (182)
..+++|.+++..|+++.. +... .+...+... + +|..|||||||+|++..+.++
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~ 213 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEI 213 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCC
Confidence 356788899999988763 3333 444444322 2 999999999999999876443
No 43
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=93.99 E-value=0.15 Score=40.72 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHH-h-c--c--CHHHHHHHHHHHHHhhCC
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVE-A-E--I--KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~-~-~--l--~~~~v~AAclY~acr~~~ 156 (182)
..+++|.+++..++++..+... .+..... . . + .|..|||||||+|++..+
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~ 202 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 202 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhC
Confidence 4567899999999998887766 5665554 2 2 3 999999999999999764
No 44
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=93.97 E-value=0.06 Score=33.64 Aligned_cols=26 Identities=23% Similarity=0.747 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeC--CCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCS--ECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~--~CG~Vl 33 (182)
..||.|++ .+..+. |+++|. +||+..
T Consensus 11 L~CP~c~~--~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHA--PLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCS--CEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCC--cceecC--CEEEcCCcCCCcEE
Confidence 47999997 466664 999999 999886
No 45
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=93.44 E-value=0.2 Score=36.63 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
...||.|++ .-.-.| ...+||.+||.--
T Consensus 27 lP~CP~C~s-eytYeD--g~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNS-EYTYED--GALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCC-CCCEEC--SSSEEETTTTEEE
T ss_pred CCCCCCCCC-cceEec--CCeEECCcccccc
Confidence 457999998 333333 4579999999865
No 46
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=93.44 E-value=0.059 Score=43.21 Aligned_cols=67 Identities=9% Similarity=-0.060 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCChHHHH----HH--HHHHHHH-hc-c---CHHHHHHHHHHHHHhhC----------CHHHHHhcCCC
Q 030129 108 AFKTIATMSDRIGQMRYIR----RW--KIKSLVE-AE-I---KTHYWLLACTLLVDKKT----------SHALLRKSALS 166 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~----~~--~i~k~a~-~~-l---~~~~v~AAclY~acr~~----------~~eia~~~~v~ 166 (182)
.++.+.++...++++.... .. .+...+. +. + +|..+||||||+|.+.. ..+++.++|++
T Consensus 152 p~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~ 231 (254)
T 2f2c_A 152 ATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFS 231 (254)
T ss_dssp GGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcC
Confidence 3467888899998876432 22 3334332 22 2 99999999999999875 25678889998
Q ss_pred ceeeecee
Q 030129 167 PMELQRRK 174 (182)
Q Consensus 167 ~~~i~r~~ 174 (182)
+.+|-..+
T Consensus 232 ~~~l~~c~ 239 (254)
T 2f2c_A 232 TNTVRTVK 239 (254)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87775543
No 47
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=93.42 E-value=0.07 Score=42.82 Aligned_cols=68 Identities=10% Similarity=-0.116 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhCChHHH----HHH--HHHHHHH-hc-c---CHHHHHHHHHHHHHhhCC-----------HHHHHhcC
Q 030129 107 LAFKTIATMSDRIGQMRYI----RRW--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTS-----------HALLRKSA 164 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v----~~~--~i~k~a~-~~-l---~~~~v~AAclY~acr~~~-----------~eia~~~~ 164 (182)
..++.|.++...++++... ... .+...+. +. + +|..+||||||+|.+..+ .+++.++|
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~ 229 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILG 229 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHC
Confidence 3677899999999987543 222 3444443 22 2 999999999999987542 56777889
Q ss_pred CCceeeecee
Q 030129 165 LSPMELQRRK 174 (182)
Q Consensus 165 v~~~~i~r~~ 174 (182)
+++.+|-..+
T Consensus 230 ~~~~~l~~c~ 239 (257)
T 1g3n_C 230 CDVSVLQAAV 239 (257)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9887775543
No 48
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=93.14 E-value=0.058 Score=38.93 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCceeEe--CCCCceEeCCCceeee
Q 030129 1 MTDAFCSDCKKHTEVVFD--HSAGDTVCSECGLVLE 34 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D--~~~G~~vC~~CG~Vl~ 34 (182)
|.+..||+||+-=.+..| ...+.+.|..||+...
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 566799999962122233 3356799999999865
No 49
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=92.70 E-value=0.062 Score=43.04 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
+..||.||+...+-++ ..|...|..||.-
T Consensus 14 ~~~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred CCcCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 3579999984456555 4688999999975
No 50
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=92.63 E-value=0.067 Score=37.22 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCceeEeCC---------------------------CCceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHS---------------------------AGDTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~---------------------------~G~~vC~~CG~Vl~ 34 (182)
....||.|+. .+..+.. +|.++|..||+...
T Consensus 7 dILaCP~cK~--pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YP 64 (97)
T 2k5r_A 7 HLLCSPDTRQ--PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFR 64 (97)
T ss_dssp SSCCCCTTSS--CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEE
T ss_pred hheECCCCCC--cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCcc
Confidence 4467999996 4555554 78999999999863
No 51
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=92.55 E-value=0.21 Score=41.33 Aligned_cols=61 Identities=8% Similarity=-0.087 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhC------CHHHHHhcC
Q 030129 104 GLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKT------SHALLRKSA 164 (182)
Q Consensus 104 ~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~------~~eia~~~~ 164 (182)
.-..+.+.|-+++..++|+..+.-. .++++.... + ....+++||+|+||+.+ ..|+....+
T Consensus 70 ~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~ 143 (306)
T 3g33_B 70 MRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTD 143 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc
Confidence 3356889999999999999887776 888887665 4 88999999999999974 256665544
No 52
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.28 E-value=0.13 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCceeEeCCCC----ceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAG----DTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G----~~vC~~CG~Vl~ 34 (182)
.+.+||+||+- +......| .++|..||++..
T Consensus 3 ~m~FCp~Cgn~--L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNM--LYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCC--CEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCE--eeEcccCCCCeeEEECCCCCCeEE
Confidence 35789999972 33332222 699999999864
No 53
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=92.19 E-value=0.22 Score=39.77 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhC
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKT 155 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~ 155 (182)
....+.|-+++..++|+..+.-. .++++.... + +...+++||+|+||+.+
T Consensus 53 ~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~e 109 (254)
T 2f2c_A 53 TILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIR 109 (254)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhc
Confidence 45789999999999998877666 888888665 4 88999999999999985
No 54
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.55 E-value=0.14 Score=34.62 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
...||.||+ .. +.....|-.-|..||.++.-.
T Consensus 35 ky~CpfCGk-~~-vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGR-KA-VKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCS-SC-EEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCC-ce-eEecCcCeEEcCCCCCEEeCC
Confidence 357999998 44 566789999999999998643
No 55
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=91.20 E-value=0.057 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030129 1 MTDAFCSDCKKHTEVVFDHSAG 22 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G 22 (182)
|....|+.||- |+|++.|
T Consensus 2 m~~y~C~vCGy----vyd~~~G 19 (46)
T 6rxn_A 2 MQKYVCNVCGY----EYDPAEH 19 (46)
T ss_dssp CCCEEETTTCC----EECGGGG
T ss_pred CCEEECCCCCe----EEeCCcC
Confidence 44445666652 4555444
No 56
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=91.20 E-value=0.11 Score=37.18 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=24.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
..||.||+ .. +.-...|-.-|..||.++.-
T Consensus 61 ytCPfCGk-~~-vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 61 HACPNCGE-DR-VDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp EECSSSCC-EE-EEEEETTEEEETTTCCEEEC
T ss_pred CcCCCCCC-ce-eEecCceeEECCCCCCEEEC
Confidence 46999997 34 55667899999999999853
No 57
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=90.98 E-value=0.12 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=24.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..||.||+ .. +.....|-..|..||.++.-.
T Consensus 28 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 28 YKCPVCGF-PK-LKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred ccCCCCCC-ce-eEEEEeEEEECCCCCcEEECC
Confidence 47999997 44 556678999999999998543
No 58
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=90.98 E-value=0.25 Score=30.60 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCCCCCCCCCceeEeC------CCC---ceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDH------SAG---DTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~------~~G---~~vC~~CG~Vl~e 35 (182)
..||.||. ...++.. +++ .++|.+||....+
T Consensus 16 ~~Cp~Cg~-~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 16 ITCPKCGN-DTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCCTTTCC-SEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eECCCCCC-CEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46999997 5555432 233 4899999987654
No 59
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=90.92 E-value=0.099 Score=32.44 Aligned_cols=18 Identities=28% Similarity=0.689 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCceeEeCCCC
Q 030129 1 MTDAFCSDCKKHTEVVFDHSAG 22 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G 22 (182)
|....|+.||- |+|++.|
T Consensus 1 m~~y~C~vCGy----vYd~~~G 18 (54)
T 4rxn_A 1 MKKYTCTVCGY----IYDPEDG 18 (54)
T ss_dssp CCCEEETTTCC----EECTTTC
T ss_pred CCceECCCCCe----EECCCcC
Confidence 44445555552 4555444
No 60
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=90.59 E-value=0.092 Score=32.29 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q 030129 1 MTDAFCSDCK 10 (182)
Q Consensus 1 m~~~~Cp~Cg 10 (182)
|....|+.||
T Consensus 1 m~~y~C~~CG 10 (52)
T 1e8j_A 1 MDIYVCTVCG 10 (52)
T ss_dssp CCCEECSSSC
T ss_pred CCcEEeCCCC
Confidence 3344455554
No 61
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.49 E-value=0.16 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..||.||+ .. +.....|-.-|..||.++.
T Consensus 37 y~CpfCgk-~~-vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGK-VA-VKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp EECTTTCC-EE-EEEEETTEEEETTTTEEEE
T ss_pred CCCCCCCC-ce-eeecCcceEEcCCCCCEEe
Confidence 46999997 44 5677899999999999984
No 62
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=90.43 E-value=0.17 Score=34.73 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=24.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..||.||+ .. +.....|-.-|..||.++.
T Consensus 37 y~CpfCgk-~~-vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 37 YFCEFCGK-FA-VKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp BCCTTTCS-SC-BEEEETTEEECSSSCCEEE
T ss_pred ccCcccCC-Ce-eEecCcceEEcCCCCCEEe
Confidence 47999998 44 5667899999999999984
No 63
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=90.33 E-value=0.26 Score=40.67 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCChHH----HHHH--HHHHHHH-hc-c---CHHHHHHHHHHHHHhhCC----------HHHHHhcCCCc
Q 030129 109 FKTIATMSDRIGQMRY----IRRW--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTS----------HALLRKSALSP 167 (182)
Q Consensus 109 ~~~I~~i~~~L~L~~~----v~~~--~i~k~a~-~~-l---~~~~v~AAclY~acr~~~----------~eia~~~~v~~ 167 (182)
++.|..+...++++.. +... .+...+. +. | +|..+||||||+|.+..+ ..++.++|+++
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4577888888877643 2222 3344332 22 3 999999999999998663 45678889888
Q ss_pred eeeece
Q 030129 168 MELQRR 173 (182)
Q Consensus 168 ~~i~r~ 173 (182)
.+|-..
T Consensus 252 ~~l~~c 257 (306)
T 3g33_B 252 DCLRAC 257 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 64
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=90.21 E-value=0.9 Score=39.28 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCChH-HHHHH--HHHHHHHhc---c----CHHHHHHHHHHHHHhhCC
Q 030129 106 ILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~-~v~~~--~i~k~a~~~---l----~~~~v~AAclY~acr~~~ 156 (182)
.-|...|..+|.+|+++. .+.+. .+|+.+..+ | ..+.++-+|+|+.|+...
T Consensus 280 ~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~ 340 (411)
T 4ell_A 280 RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKN 340 (411)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhcc
Confidence 459999999999999875 56655 778776544 3 899999999999999874
No 65
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=90.08 E-value=0.15 Score=33.45 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
..||.||+ .. +.....|-.-|..||.++.-
T Consensus 27 y~C~fCgk-~~-vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGK-KT-VKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCS-SC-BSBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCC-ce-eEecCCCeEECCCCCCEEeC
Confidence 47999997 44 56678999999999999753
No 66
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=89.90 E-value=0.2 Score=34.37 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=24.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..||.||+ .. +.....|-.-|..||.++.
T Consensus 37 y~CpfCgk-~~-vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 37 YDCSFCGK-KT-VKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCCSSSCS-SC-CEEEETTEEECTTTCCEEE
T ss_pred CcCCCCCC-ce-eeecccceEEcCCCCCEEe
Confidence 57999997 44 5567899999999999984
No 67
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=89.80 E-value=0.23 Score=32.46 Aligned_cols=27 Identities=22% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..|| |+. -.+.+...-..-|. ||.++.
T Consensus 5 v~C~-C~~--~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGR--ALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSC--CEEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCC--EEEEcCCCcEEECC-CCCeee
Confidence 3599 997 35677777889999 999986
No 68
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.60 E-value=0.22 Score=40.57 Aligned_cols=65 Identities=5% Similarity=-0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCChHHH------------HHH-HHHHHHH-hc-c---CHHHHHHHHHHHHHhhCCHHHHHhcCCCcee
Q 030129 108 AFKTIATMSDRIGQMRYI------------RRW-KIKSLVE-AE-I---KTHYWLLACTLLVDKKTSHALLRKSALSPME 169 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v------------~~~-~i~k~a~-~~-l---~~~~v~AAclY~acr~~~~eia~~~~v~~~~ 169 (182)
.++.|.+++..+++++.. ... .+...+. +. + +|..+||||||+|+. ..+++.++|+++.+
T Consensus 151 p~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~--~~~l~~~tg~~~~~ 228 (283)
T 1w98_B 151 IVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS--SELMQKVSGYQWCD 228 (283)
T ss_dssp HHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC--HHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC--hHHHHHHhCCCHHH
Confidence 567888888888775321 111 3444443 33 2 999999999999974 46778888888877
Q ss_pred eecee
Q 030129 170 LQRRK 174 (182)
Q Consensus 170 i~r~~ 174 (182)
|...+
T Consensus 229 i~~c~ 233 (283)
T 1w98_B 229 IENCV 233 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 69
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.58 E-value=0.13 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.875 Sum_probs=15.2
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCce-ee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGL-VL 33 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~-Vl 33 (182)
.|++||. .+..+ ....+.|..||. ||
T Consensus 30 ~C~~CG~--~~e~~-~~d~irCp~CG~RIL 56 (70)
T 1twf_L 30 ICAECSS--KLSLS-RTDAVRCKDCGHRIL 56 (70)
T ss_dssp ECSSSCC--EECCC-TTSTTCCSSSCCCCC
T ss_pred ECCCCCC--cceeC-CCCCccCCCCCceEe
Confidence 5888885 22222 334466888887 54
No 70
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=89.14 E-value=1 Score=35.58 Aligned_cols=50 Identities=4% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-------c-CHHHHHHHHHHHHHhhCC
Q 030129 107 LAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-------I-KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 107 ~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-------l-~~~~v~AAclY~acr~~~ 156 (182)
...+.|.++..+-.+|+.|.+. ++.+..... . ++..|+|||+.+|..+.+
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~ 73 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQ 73 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcC
Confidence 4668889999999999999888 888776543 2 999999999999998873
No 71
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=88.64 E-value=1.4 Score=37.16 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCChH-HHHHH--HHHHHHHhc---c----CHHHHHHHHHHHHHhhCC
Q 030129 104 GLILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 104 ~L~~a~~~I~~i~~~L~L~~-~v~~~--~i~k~a~~~---l----~~~~v~AAclY~acr~~~ 156 (182)
.+.-|...|..+|+.|+++. .+.+. .+|+.+..+ | ..+.++-+|+|+.||.+.
T Consensus 214 vy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~ 276 (347)
T 2r7g_A 214 VYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKN 276 (347)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcC
Confidence 34558899999999999875 46665 777776443 3 899999999999999884
No 72
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=88.56 E-value=0.22 Score=36.53 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCceeE--eCC--CCceEeCCCceee
Q 030129 3 DAFCSDCKKHTEVVF--DHS--AGDTVCSECGLVL 33 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~--D~~--~G~~vC~~CG~Vl 33 (182)
+.+||+|++ -+.. |.+ ...++|..||++.
T Consensus 24 ~~FCPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 24 FRFCRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCBCTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred CeeCCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 468999996 2222 211 2259999999975
No 73
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=88.27 E-value=0.35 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.637 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCcee-------EeCCCCc---------eEeCCCceee
Q 030129 3 DAFCSDCKKHTEVV-------FDHSAGD---------TVCSECGLVL 33 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv-------~D~~~G~---------~vC~~CG~Vl 33 (182)
+|+||.||+ ..++ +++ .|. .+|..||.++
T Consensus 2 ~m~Cp~Cg~-~~l~~~~~~~~~~~-~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 2 HMKCPVCHQ-GEMVSGIKDIPYTF-RGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp -CBCTTTSS-SBEEEEEEEEEEEE-TTEEEEEEEEEEEEETTTCCEE
T ss_pred ceECCCCCC-CeeEeEEEEEEEEE-CCEEEEEcCceeEECCCCCCEE
Confidence 588999996 3332 222 232 6799999886
No 74
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=88.22 E-value=0.22 Score=42.17 Aligned_cols=49 Identities=6% Similarity=0.023 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCChHHHHHH--HHHHHHH-h-c--c--CHHHHHHHHHHHHHhhCC
Q 030129 108 AFKTIATMSDRIGQMRYIRRW--KIKSLVE-A-E--I--KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~~~--~i~k~a~-~-~--l--~~~~v~AAclY~acr~~~ 156 (182)
.+++|.+++..|+++..+... .|...+. . . + .|..|||||||+|++..+
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~ 209 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSN 209 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhC
Confidence 457889999999998877666 5665654 2 2 2 999999999999999765
No 75
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=88.03 E-value=0.84 Score=37.87 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=29.4
Q ss_pred HHHHHHHHHh-------CChHHHHHH--HHHHHHHhc---c--CHHHHHHHHHHHHHhhCC
Q 030129 110 KTIATMSDRI-------GQMRYIRRW--KIKSLVEAE---I--KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 110 ~~I~~i~~~L-------~L~~~v~~~--~i~k~a~~~---l--~~~~v~AAclY~acr~~~ 156 (182)
+.|.+++..| +.++.+... .+...+... + .|..|||||||+|++..+
T Consensus 165 ~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~ 225 (323)
T 1jkw_A 165 RPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAG 225 (323)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcC
Confidence 4455555443 344444444 555544332 2 999999999999999765
No 76
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=87.94 E-value=0.26 Score=27.87 Aligned_cols=28 Identities=21% Similarity=0.649 Sum_probs=17.7
Q ss_pred CCCCCCCCC-ceeEeCCCCceEeCCCcee
Q 030129 5 FCSDCKKHT-EVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 5 ~Cp~Cg~~~-~iv~D~~~G~~vC~~CG~V 32 (182)
.||.|++.. .++.+...=.+-|..||..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 599999832 2333323333669999986
No 77
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=87.17 E-value=0.41 Score=36.54 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
.||.|++ .+ ++...|.+.|..||..
T Consensus 44 ACp~CnK--KV-~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGK--SV-LKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCC--CE-EEETTTEEEETTTTEE
T ss_pred hchhhCC--Ee-eeCCCCeEECCCCCCC
Confidence 4999997 23 4678899999999998
No 78
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=85.87 E-value=2.8 Score=38.31 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCChH-HHHHH--HHHHHHHhc---c----CHHHHHHHHHHHHHhhCC
Q 030129 105 LILAFKTIATMSDRIGQMR-YIRRW--KIKSLVEAE---I----KTHYWLLACTLLVDKKTS 156 (182)
Q Consensus 105 L~~a~~~I~~i~~~L~L~~-~v~~~--~i~k~a~~~---l----~~~~v~AAclY~acr~~~ 156 (182)
+.-|...|..+|+.|+++. .+.+. .+|+.+..+ | ..+.++-+|+|+.||...
T Consensus 524 y~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~ 585 (656)
T 4elj_A 524 YRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKN 585 (656)
T ss_dssp HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 3559999999999998874 56655 777776443 3 999999999999999884
No 79
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=85.73 E-value=0.53 Score=26.42 Aligned_cols=27 Identities=30% Similarity=0.683 Sum_probs=15.6
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
.+|+.||. --.+.....|.++| ||.=+
T Consensus 7 Y~C~~CGn-ivev~~~g~~~l~C--CG~~M 33 (36)
T 1dxg_A 7 YKCELCGQ-VVKVLEEGGGTLVC--CGEDM 33 (36)
T ss_dssp EECTTTCC-EEEEEECCSSCEEE--TTEEC
T ss_pred EEcCCCCc-EEEEEeCCCcCEEe--CCccc
Confidence 46888875 22233346677777 66543
No 80
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=85.70 E-value=0.36 Score=32.66 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCCCCCCCC--ceeEeC--CCCceEeCCCceeeeC
Q 030129 5 FCSDCKKHT--EVVFDH--SAGDTVCSECGLVLES 35 (182)
Q Consensus 5 ~Cp~Cg~~~--~iv~D~--~~G~~vC~~CG~Vl~e 35 (182)
.||.|+... .+..|. ..|.+.|..||.-.+-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 599999642 334444 4678999999988763
No 81
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=85.29 E-value=1.7 Score=36.06 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=41.9
Q ss_pred HHHHHHHHhCChHHHHHH--HHHHHHHhc-------c-CHHHHHHHHHHHHHhhC------CHHHHHhcCCCc
Q 030129 111 TIATMSDRIGQMRYIRRW--KIKSLVEAE-------I-KTHYWLLACTLLVDKKT------SHALLRKSALSP 167 (182)
Q Consensus 111 ~I~~i~~~L~L~~~v~~~--~i~k~a~~~-------l-~~~~v~AAclY~acr~~------~~eia~~~~v~~ 167 (182)
....+|..|+|++.+.++ .+|+.+... . ..+..-.||||+||... .-.|.+.++++.
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi 77 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISV 77 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCH
Confidence 456789999999999888 999998662 2 67777777799999743 145555555554
No 82
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=85.00 E-value=0.31 Score=30.21 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=6.6
Q ss_pred eEeCCCceeeeC
Q 030129 24 TVCSECGLVLES 35 (182)
Q Consensus 24 ~vC~~CG~Vl~e 35 (182)
++|+.||.|.++
T Consensus 4 y~C~~CGyvYd~ 15 (55)
T 2v3b_B 4 WQCVVCGFIYDE 15 (55)
T ss_dssp EEETTTCCEEET
T ss_pred EEeCCCCeEECC
Confidence 455555555554
No 83
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=83.54 E-value=0.57 Score=33.28 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCceeE-------eC-------CC-CceEeCCCceeee
Q 030129 3 DAFCSDCKKHTEVVF-------DH-------SA-GDTVCSECGLVLE 34 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~-------D~-------~~-G~~vC~~CG~Vl~ 34 (182)
.|+||.||+ ...+. ++ .. --.+|..||.++-
T Consensus 2 ~M~Cp~Cg~-~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 2 HMKCPVCHQ-GEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CCBCTTTSS-SBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred CcCCCcCCC-CceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 578999996 32221 11 11 2478999999874
No 84
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.49 E-value=0.33 Score=29.71 Aligned_cols=23 Identities=26% Similarity=0.700 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..||.|+.. ...|-.-|..||..
T Consensus 15 ~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE------ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc------CCCCceecCCCCCc
Confidence 469999972 35788999999987
No 85
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=83.37 E-value=0.89 Score=30.35 Aligned_cols=27 Identities=15% Similarity=0.731 Sum_probs=20.2
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
+||.|+. .++.++......|..||..+
T Consensus 27 wCP~C~~--~~~~~~~~~~v~C~~C~~~F 53 (86)
T 2ct7_A 27 WCAQCSF--GFIYEREQLEATCPQCHQTF 53 (86)
T ss_dssp CCSSSCC--CEECCCSCSCEECTTTCCEE
T ss_pred ECcCCCc--hheecCCCCceEeCCCCCcc
Confidence 5999985 45556666668899999876
No 86
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=83.03 E-value=0.45 Score=30.96 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=7.8
Q ss_pred ceEeCCCceeeeC
Q 030129 23 DTVCSECGLVLES 35 (182)
Q Consensus 23 ~~vC~~CG~Vl~e 35 (182)
.++|+.||.|.++
T Consensus 7 ~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 7 KYECEACGYIYEP 19 (70)
T ss_dssp CEEETTTCCEECT
T ss_pred eEEeCCCCEEEcC
Confidence 4566666666653
No 87
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=82.06 E-value=0.47 Score=31.81 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=12.7
Q ss_pred CceEeCCCceeeeCCC
Q 030129 22 GDTVCSECGLVLESHS 37 (182)
Q Consensus 22 G~~vC~~CG~Vl~e~~ 37 (182)
..++|..||.|.++..
T Consensus 26 ~~y~C~vCGyvYD~~~ 41 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEAL 41 (81)
T ss_dssp CEEEETTTCCEEETTT
T ss_pred ceEEeCCCCEEEcCCc
Confidence 4699999999988643
No 88
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=81.14 E-value=0.52 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.+.+||.|+. ..+ ..+|..||....
T Consensus 5 ~mr~C~~Cgv-YTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 5 RMKKCPKCGL-YTL-------KEICPKCGEKTV 29 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCSSSCSBCB
T ss_pred hceeCCCCCC-Eec-------cccCcCCCCcCC
Confidence 3568999996 333 568999998853
No 89
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=80.93 E-value=0.48 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCcee-EeCCCCceEeCCCceee
Q 030129 3 DAFCSDCKKHTEVV-FDHSAGDTVCSECGLVL 33 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv-~D~~~G~~vC~~CG~Vl 33 (182)
...|.+|+...... -....|.++|..||+-.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 35 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYH 35 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHH
Confidence 35688887632211 12246778888888753
No 90
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=80.72 E-value=1.3 Score=26.71 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCceeE-e-----CCCC---ceEeCCCcee
Q 030129 3 DAFCSDCKKHTEVVF-D-----HSAG---DTVCSECGLV 32 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~-D-----~~~G---~~vC~~CG~V 32 (182)
...||.||. .+.++ . .++| .++|.+||..
T Consensus 9 ~~~Cp~Cg~-~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 9 LFTCGKCKK-KNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp CSCCSSSCS-SCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred ccCCCCCCC-CEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 357999997 44433 1 1223 3799999964
No 91
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=78.38 E-value=1.3 Score=33.64 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=21.3
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCceeee
Q 030129 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 5 ~Cp~--Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.||. |++. +.+...|.+.|..|+...+
T Consensus 45 aC~~~~CnKK---v~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKK---VIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCB---CEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCc---cccCCCCeEECCCCCCcCC
Confidence 5999 9972 3466789999999998753
No 92
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=78.35 E-value=1.8 Score=35.00 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..+||.||+ . .......-..+|..||.+.-
T Consensus 107 ~~fC~~CG~-~-~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGH-E-MYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCC-B-EEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCC-c-CccCCCceeeeCCCCCCEec
Confidence 568999997 3 33334445689999998753
No 93
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=76.80 E-value=0.69 Score=31.40 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=12.8
Q ss_pred CCceEeCCCceeeeCC
Q 030129 21 AGDTVCSECGLVLESH 36 (182)
Q Consensus 21 ~G~~vC~~CG~Vl~e~ 36 (182)
...++|..||+|.++.
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 3469999999999864
No 94
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=75.57 E-value=6.5 Score=31.31 Aligned_cols=50 Identities=6% Similarity=-0.090 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc--c---CHHHHHHHHHHHHHhhC
Q 030129 106 ILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE--I---KTHYWLLACTLLVDKKT 155 (182)
Q Consensus 106 ~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~--l---~~~~v~AAclY~acr~~ 155 (182)
....+.|-+++..++|+..+.-. .++.+.... + ....+++||+++|++.+
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~e 106 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVR 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999998766555 777777554 3 88999999999999965
No 95
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.30 E-value=2.6 Score=31.64 Aligned_cols=29 Identities=21% Similarity=0.705 Sum_probs=19.4
Q ss_pred CCCCCCCCC-CceeEeCCCC--ceEeCCCcee
Q 030129 4 AFCSDCKKH-TEVVFDHSAG--DTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~-~~iv~D~~~G--~~vC~~CG~V 32 (182)
..||.|++. +.++.|.+.+ .+.|..||..
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 469999984 3344433333 3779999987
No 96
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=73.95 E-value=2.9 Score=31.19 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCceeEeC--CC-CceEeCCCce
Q 030129 3 DAFCSDCKKHTEVVFDH--SA-GDTVCSECGL 31 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~--~~-G~~vC~~CG~ 31 (182)
..+||.||.. ..+..+ .. -..+|..||.
T Consensus 3 ~~~C~~CG~~-~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE-VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB-CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc-cccccccCCCCcceECCCCCC
Confidence 3689999973 223222 12 2479999993
No 97
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=73.59 E-value=1.6 Score=36.66 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=13.3
Q ss_pred eEeCCCceeeeCCCccc
Q 030129 24 TVCSECGLVLESHSIDE 40 (182)
Q Consensus 24 ~vC~~CG~Vl~e~~id~ 40 (182)
..|.+||.|.-+...+.
T Consensus 54 ~~C~~Cg~v~~~~~~~~ 70 (416)
T 4e2x_A 54 GRCDSCEMVQLTEEVPR 70 (416)
T ss_dssp EEETTTCCEEESSCCCH
T ss_pred EECCCCCceeecCcCCH
Confidence 57999999987766543
No 98
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=73.47 E-value=0.76 Score=26.99 Aligned_cols=30 Identities=30% Similarity=0.786 Sum_probs=18.7
Q ss_pred CCCCCCCCCCc-eeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTE-VVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~-iv~D~~~G~~vC~~CG~Vl 33 (182)
..|-+|+.... .--.-..|.++|..||+-.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~ 32 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFL 32 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHH
Confidence 35888886322 2223356788888888754
No 99
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=73.41 E-value=1.6 Score=29.23 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 030129 1 MTDAFCSDCKK 11 (182)
Q Consensus 1 m~~~~Cp~Cg~ 11 (182)
|+ ..||.|..
T Consensus 1 M~-~~CP~C~~ 10 (81)
T 2jrp_A 1 ME-ITCPVCHH 10 (81)
T ss_dssp CC-CCCSSSCS
T ss_pred CC-CCCCCCCC
Confidence 44 55777764
No 100
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=73.06 E-value=3.6 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCceeEeCCCC-----------ceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAG-----------DTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G-----------~~vC~~CG~Vl~ 34 (182)
...+||+||....+.+=.-.| -.+|..||.-+.
T Consensus 221 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 346899999854443321222 379999998773
No 101
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=72.24 E-value=3.1 Score=28.58 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCCCCCC-CCceeEeCCCCceEeCCCce
Q 030129 5 FCSDCKK-HTEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 5 ~Cp~Cg~-~~~iv~D~~~G~~vC~~CG~ 31 (182)
.||.|+. ++.+.+++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 5999975 34688888999999999993
No 102
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=71.23 E-value=1.1 Score=28.75 Aligned_cols=31 Identities=29% Similarity=0.774 Sum_probs=19.1
Q ss_pred CCCCCCCCCCc-eeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTE-VVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~-iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..|-+|+.... .--.-..|.++|..||+-..
T Consensus 10 ~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 10 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 56888886322 11222467788888888754
No 103
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=70.06 E-value=2.6 Score=32.03 Aligned_cols=28 Identities=21% Similarity=0.727 Sum_probs=18.5
Q ss_pred CCCCCCCC-CceeEeCCCCc--eEeCCCcee
Q 030129 5 FCSDCKKH-TEVVFDHSAGD--TVCSECGLV 32 (182)
Q Consensus 5 ~Cp~Cg~~-~~iv~D~~~G~--~vC~~CG~V 32 (182)
.||.|++. +.++.|.+.+. +.|..||..
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 59999984 23344323333 779999976
No 104
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=69.40 E-value=2.8 Score=28.95 Aligned_cols=28 Identities=25% Similarity=0.705 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
|+ ..||.|.. ++.. ..|...|..|+.-+
T Consensus 31 M~-~~CP~Cq~--eL~~--~g~~~hC~~C~~~f 58 (101)
T 2jne_A 31 ME-LHCPQCQH--VLDQ--DNGHARCRSCGEFI 58 (101)
T ss_dssp CC-CBCSSSCS--BEEE--ETTEEEETTTCCEE
T ss_pred cc-ccCccCCC--ccee--cCCEEECccccchh
Confidence 45 67999995 4544 35666699998754
No 105
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=69.33 E-value=2.8 Score=34.76 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCce-eEeC---CCC--ceEeCCCcee
Q 030129 3 DAFCSDCKKHTEV-VFDH---SAG--DTVCSECGLV 32 (182)
Q Consensus 3 ~~~Cp~Cg~~~~i-v~D~---~~G--~~vC~~CG~V 32 (182)
...||.||+.+.+ +... ..| ...|.-||.-
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~ 217 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACE 217 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCE
Confidence 4679999985322 2221 356 4899999875
No 106
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=68.92 E-value=2.1 Score=30.25 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=16.8
Q ss_pred CceeEeCCCCceEeCCCceeee
Q 030129 13 TEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 13 ~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..+......+.+.|.+||...+
T Consensus 63 a~L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 63 AILDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp CCEEEEEECCEEECSSSSCEEC
T ss_pred cEEEEEeccceEEcCCCCCEEe
Confidence 3556666778899999998875
No 107
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=68.29 E-value=1.5 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
.+.+||.||. -.+ ..+|..||...
T Consensus 4 ~mr~C~~Cg~-YTL-------k~~CP~CG~~t 27 (60)
T 2aus_D 4 RIRKCPKCGR-YTL-------KETCPVCGEKT 27 (60)
T ss_dssp CCEECTTTCC-EES-------SSBCTTTCSBC
T ss_pred cceECCCCCC-EEc-------cccCcCCCCcc
Confidence 3568999996 232 46799999775
No 108
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=68.06 E-value=3.7 Score=27.37 Aligned_cols=7 Identities=43% Similarity=1.630 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 030129 5 FCSDCKK 11 (182)
Q Consensus 5 ~Cp~Cg~ 11 (182)
.||+||.
T Consensus 33 fCPeCgq 39 (81)
T 2jrp_A 33 LCPDCRQ 39 (81)
T ss_dssp ECSSSCS
T ss_pred cCcchhh
Confidence 3555553
No 109
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=67.82 E-value=3.1 Score=33.39 Aligned_cols=30 Identities=20% Similarity=0.654 Sum_probs=19.9
Q ss_pred CCCCCCCCCCcee---EeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVV---FDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv---~D~~~G~~vC~~CG~Vl~ 34 (182)
++||+||+ ..+- -+.--.+..|.+|+.-.|
T Consensus 35 ~yCPnCG~-~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 35 SYCPNCGN-NPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp CCCTTTCC-SSCEEC----CCCEEECTTTCCEEE
T ss_pred CcCCCCCC-hhhhhccCCCcccccccCCcchhhe
Confidence 68999997 3331 122445699999987765
No 110
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=67.55 E-value=1.2 Score=29.02 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=4.2
Q ss_pred eEeCCCcee
Q 030129 24 TVCSECGLV 32 (182)
Q Consensus 24 ~vC~~CG~V 32 (182)
.+|.+||..
T Consensus 9 ~~C~nC~tt 17 (71)
T 2kae_A 9 FQCSNCSVT 17 (71)
T ss_dssp CCCSSSCCS
T ss_pred CcCCccCCC
Confidence 445555443
No 111
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=67.40 E-value=1 Score=28.65 Aligned_cols=31 Identities=32% Similarity=0.906 Sum_probs=15.8
Q ss_pred CCCCCCCCCCceeE-eCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVF-DHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~-D~~~G~~vC~~CG~Vl~ 34 (182)
..|-+|+....... .-..|.++|..||+-..
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 35666765221111 22446666777776654
No 112
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.21 E-value=4.4 Score=34.80 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=21.3
Q ss_pred CCCC--CCCCCceeEeCCCCceEeCCCceeee
Q 030129 5 FCSD--CKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 5 ~Cp~--Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.||. |++ . +.+...|.+.|..||...+
T Consensus 310 aC~~~~C~k--k-v~~~~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 310 ACASEGCNK--K-VNLDHENNWRCEKCDRSYA 338 (444)
T ss_dssp ECCSTTCCC--B-EEECTTSCEEETTTTEEES
T ss_pred cCCcccCCC--c-cccCCCccEECCCCCCcCc
Confidence 5999 997 2 4456789999999998853
No 113
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=66.52 E-value=5.1 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCc
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSI 38 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~i 38 (182)
...+|-.|++ ++ ...| +.|.+||++.-.+-.
T Consensus 34 ~pt~C~~C~~---~l--~~qG-~kC~~C~~~cHkkC~ 64 (72)
T 2fnf_X 34 GPGWCDLCGR---EV--LRQA-LRCANCKFTCHSECR 64 (72)
T ss_dssp SCCBCTTTSS---BC--SSCC-EECTTSSCEECTGGG
T ss_pred CCcchhhhhH---HH--HhCc-CccCCCCCeechhhh
Confidence 3468999986 33 4555 679999999865443
No 114
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.65 E-value=3.8 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.625 Sum_probs=21.6
Q ss_pred CCCCCCC--CCCCCceeEeCCCCceEeC-----CCceee
Q 030129 2 TDAFCSD--CKKHTEVVFDHSAGDTVCS-----ECGLVL 33 (182)
Q Consensus 2 ~~~~Cp~--Cg~~~~iv~D~~~G~~vC~-----~CG~Vl 33 (182)
...+||. |+. .++.+++.....|. .||..+
T Consensus 24 ~~~~CP~p~C~~--~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGA--GLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCC--CCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCc--ccEECCCCCcCCCCCCCCCCCCCee
Confidence 3467998 985 45556666778887 888765
No 115
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.63 E-value=8.4 Score=27.31 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceeE-e--------CCCCceEeCCCceeeeC
Q 030129 4 AFCSDCKKHTEVVF-D--------HSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~-D--------~~~G~~vC~~CG~Vl~e 35 (182)
..||.||. ...++ . +-+=.++|.+||..-.+
T Consensus 73 ~~Cp~C~~-~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 73 RECPKCHS-RENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp CCCTTTCC-CCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred CCCCCCCC-CEEEEEEecCccCCCCceEEEEeCCCCCEecc
Confidence 57999997 44433 2 12223899999986433
No 116
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=64.66 E-value=3.2 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=14.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|.+||.. +..+ ....+-|.+||.=
T Consensus 22 Y~C~~Cg~~--~~l~-~~~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGAR--NTIQ-AKEVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCB--CCCC-SSSCCCCSSSCCC
T ss_pred EECCCCCCe--eecC-CCCceECCCCCcE
Confidence 357777752 2222 2344777777753
No 117
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=64.37 E-value=5.6 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
..+|..|++ ++ ...| +-|.+||++.-.
T Consensus 22 pt~C~~C~~---~i--~kqg-~kC~~C~~~cH~ 48 (59)
T 1rfh_A 22 PGWCDLCGR---EV--LRQA-LRCANCKFTCHS 48 (59)
T ss_dssp CEECTTTCS---EE--CSCC-EECTTTSCEECH
T ss_pred CeEchhcch---hh--hhCc-cEeCCCCCeEeh
Confidence 467999986 33 4555 679999998753
No 118
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=61.29 E-value=3.6 Score=26.44 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=17.6
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCCce
Q 030129 3 DAFCSDCKKHT----EVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~D~~~G~~vC~~CG~ 31 (182)
+.+|.-||+.. .+|. ..|-+||.+|=.
T Consensus 18 ~~~CSFCGK~e~eV~~LIa--GpgvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIA--GPSVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEE--CSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCC--CCCCChhHHHHH
Confidence 45799999742 2333 246789998843
No 119
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=60.99 E-value=3.7 Score=27.24 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=8.9
Q ss_pred CCCCCCCCCCC
Q 030129 1 MTDAFCSDCKK 11 (182)
Q Consensus 1 m~~~~Cp~Cg~ 11 (182)
|...+||.||.
T Consensus 28 ~~k~FCp~CGn 38 (79)
T 2con_A 28 MNRVFCGHCGN 38 (79)
T ss_dssp SSCCSCSSSCC
T ss_pred cccccccccCc
Confidence 56678999997
No 120
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=60.78 E-value=4.8 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=18.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.+|+.||.. -.+.....|.++| ||.-++
T Consensus 8 YkC~~CGni-vev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 8 YKCEVCGNI-VEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp EECTTTCCE-EEEEECCSSCEEE--TTEECE
T ss_pred EEcCCCCeE-EEEEcCCCcceec--CCcccc
Confidence 469999862 2233556777888 887654
No 121
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=60.74 E-value=21 Score=32.67 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=39.6
Q ss_pred HHHHHHHHhCChHHHHHH--HHHHHHHh-c------c--CHHHHHHHHHHHHHhhCC-----HHHHHhcCCCc
Q 030129 111 TIATMSDRIGQMRYIRRW--KIKSLVEA-E------I--KTHYWLLACTLLVDKKTS-----HALLRKSALSP 167 (182)
Q Consensus 111 ~I~~i~~~L~L~~~v~~~--~i~k~a~~-~------l--~~~~v~AAclY~acr~~~-----~eia~~~~v~~ 167 (182)
....+|..|++++.+.++ +.|+.+.. . + ....+.|+.+|.||+.++ -.|-+..+++.
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl 79 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISV 79 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcCCH
Confidence 457889999999999888 99998864 1 2 667777777777776553 34444444443
No 122
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=59.12 E-value=2.1 Score=30.96 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=13.9
Q ss_pred eCCCCceEeCCCceeee
Q 030129 18 DHSAGDTVCSECGLVLE 34 (182)
Q Consensus 18 D~~~G~~vC~~CG~Vl~ 34 (182)
+-.+|.++|.+||.+..
T Consensus 94 ~V~EG~L~Cp~cgr~yp 110 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYP 110 (125)
T ss_dssp EEEEEEEEETTTCCEEE
T ss_pred EEEEEEEECCCCCCEee
Confidence 34579999999999963
No 123
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=58.01 E-value=2.6 Score=26.42 Aligned_cols=21 Identities=24% Similarity=0.847 Sum_probs=12.6
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
.||+||. .. .--.+|..||.-
T Consensus 32 ~c~~cG~-~~------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 32 ECPQCHG-KK------LSHHICPNCGYY 52 (60)
T ss_dssp ECTTTCC-EE------CTTBCCTTTCBS
T ss_pred ECCCCCC-Ee------CCceEcCCCCcC
Confidence 5777775 21 123678888854
No 124
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=57.94 E-value=6.7 Score=33.36 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred CCCCCCCC-CceeEeCCCCceEeCCCce
Q 030129 5 FCSDCKKH-TEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 5 ~Cp~Cg~~-~~iv~D~~~G~~vC~~CG~ 31 (182)
.||.|+.. +.+.+++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 59999853 4588899999999999994
No 125
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=57.82 E-value=8.8 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=10.1
Q ss_pred eEeCCCceeeeCC
Q 030129 24 TVCSECGLVLESH 36 (182)
Q Consensus 24 ~vC~~CG~Vl~e~ 36 (182)
++|..||.|.++.
T Consensus 3 ~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 3 LSCKICGYIYDED 15 (52)
T ss_dssp EEESSSSCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 6888888887654
No 126
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=57.71 E-value=2.9 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.773 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCce
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (182)
+..||.||+ ..+=. -...|..||+
T Consensus 16 H~lCrRCG~-~sfH~----qK~~CgkCGY 39 (97)
T 2zkr_2 16 HTLCRRCGS-KAYHL----QKSTCGKCGY 39 (97)
T ss_dssp EECCTTTCS-SCEET----TSCCBTTTCT
T ss_pred CCcCCCCCC-ccCcC----ccccCcccCC
Confidence 347999997 44321 2579999998
No 127
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=56.69 E-value=6.6 Score=30.75 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=21.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCce
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (182)
..|-.||......+++..|-.+|..|..
T Consensus 151 ~~C~~cg~~~~~~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 151 ARCARCGAPDPEHPDPLGGQLLCSKCAA 178 (244)
T ss_dssp SBCTTTCCBSCCEECTTTSSEECTTTCS
T ss_pred CccccCCCCCCCcEecccCEEECcccCC
Confidence 3688898743456788999999999863
No 128
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=56.63 E-value=9.5 Score=25.69 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCceeEeCCCCc
Q 030129 1 MTDAFCSDCKKHTEVVFDHSAGD 23 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~ 23 (182)
|....|+.||- |+|++.|+
T Consensus 33 m~~y~C~vCGy----vYD~~~Gd 51 (87)
T 1s24_A 33 YLKWICITCGH----IYDEALGD 51 (87)
T ss_dssp CCEEEETTTTE----EEETTSCC
T ss_pred CceEECCCCCe----EecCCcCC
Confidence 44567999993 68887765
No 129
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=56.52 E-value=5 Score=24.28 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=15.5
Q ss_pred CCCCCCCCCCC----ceeEeCCCCceEeCCC
Q 030129 3 DAFCSDCKKHT----EVVFDHSAGDTVCSEC 29 (182)
Q Consensus 3 ~~~Cp~Cg~~~----~iv~D~~~G~~vC~~C 29 (182)
+.+|.-||+.. .++. ..|-+||.+|
T Consensus 11 ~~~CSFCGk~~~ev~~LIa--Gpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIA--GPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEE--CSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCC--CCCCEehHHH
Confidence 35799998632 2232 2366888887
No 130
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=56.26 E-value=7 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..||.|++ .++++. |.+.|+ |.+
T Consensus 79 ~~CP~C~G--~l~y~~--~~Y~C~--G~i 101 (160)
T 2riq_A 79 LPCEECSG--QLVFKS--DAYYCT--GDV 101 (160)
T ss_dssp CCCTTTCC--CEEEET--TEEEEC--CEE
T ss_pred CCCCCCCC--EEEEeC--CeEEEC--CCC
Confidence 46999995 578764 899998 555
No 131
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=54.14 E-value=5.6 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=11.0
Q ss_pred CCCceEeCCCcee
Q 030129 20 SAGDTVCSECGLV 32 (182)
Q Consensus 20 ~~G~~vC~~CG~V 32 (182)
..|+.+|..||.+
T Consensus 2 k~gDW~C~~C~~~ 14 (32)
T 2lk0_A 2 KFEDWLCNKCCLN 14 (32)
T ss_dssp CCSEEECTTTCCE
T ss_pred CCCCCCcCcCcCC
Confidence 4688999999887
No 132
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=51.85 E-value=8.3 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=25.7
Q ss_pred CCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 20 SAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 20 ~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
+.|.++|..||.-|= +.-.|.|.-|.+|.+.
T Consensus 17 e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~ 49 (124)
T 2kv1_A 17 EPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCC
T ss_pred CCEEEEecCCCCcccccCCcccCCCCCceeecc
Confidence 779999999999874 4457889999999754
No 133
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=51.65 E-value=9.8 Score=29.26 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
..||.||. ..++-.+.. ...|..||+..
T Consensus 114 ~~Cp~Cg~-g~fma~h~d-R~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGP-GIFMAKHYD-RHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCS-SCEEEECSS-CEEETTTCCCB
T ss_pred ccCCccCC-CccccCccC-CCccCCceeEE
Confidence 46999995 556666554 56999999986
No 134
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=50.01 E-value=4.3 Score=29.55 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.1
Q ss_pred CceeEeCCCCceEeCCCceeeeC
Q 030129 13 TEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 13 ~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
..+......+...|.+||...+-
T Consensus 60 A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 60 AEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp CEEEEEEECCEEEETTTCCEEEG
T ss_pred CEEEEEecCCcEECCCCCCEEec
Confidence 35666677889999999999763
No 135
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=49.39 E-value=11 Score=27.93 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.0
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-+|.|.-|.+|.+.
T Consensus 57 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 90 (151)
T 2k8d_A 57 HDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDV 90 (151)
T ss_dssp CSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCC
T ss_pred CCCEEEEecCCCCcccCCcccccCCCCCcccCcc
Confidence 4789999999998874 4457888999999864
No 136
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=49.30 E-value=15 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=25.9
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+.
T Consensus 16 ~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~p 49 (124)
T 2kao_A 16 FEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTET 49 (124)
T ss_dssp CCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCC
T ss_pred CCCEEEEeCCCCCccccCcccccCCCCChhhCcc
Confidence 3789999999999875 3446888999999863
No 137
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=49.05 E-value=6.7 Score=27.89 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=10.8
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 91 HliC~~Cg~v~~ 102 (136)
T 1mzb_A 91 HMVCVDTGEVIE 102 (136)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999986
No 138
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=48.26 E-value=5.2 Score=28.30 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=21.7
Q ss_pred CCCCCCCCCC-ceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHT-EVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~-~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..|.+|+... ..--...+|.++|..||+...
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 5799999632 222234678999999999764
No 139
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=48.22 E-value=11 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-+|.|.-|.+|.+.
T Consensus 33 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 66 (143)
T 2l1u_A 33 KETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 66 (143)
T ss_dssp CCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSC
T ss_pred cCCeEEEeCCCCCeeecCcccccCCCCChhhchh
Confidence 4789999999998774 4457888899999764
No 140
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=47.98 E-value=6.3 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.474 Sum_probs=20.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..||.|+..+.+-.........|..||.-+.+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~ 38 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDG 38 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCC
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccC
Confidence 459999974333223344456789998876443
No 141
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=47.68 E-value=6.7 Score=27.09 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHhc--cCHHHHHHHHHHHHHhhCCHHHHHhcCCCceeeece
Q 030129 131 KSLVEAE--IKTHYWLLACTLLVDKKTSHALLRKSALSPMELQRR 173 (182)
Q Consensus 131 ~k~a~~~--l~~~~v~AAclY~acr~~~~eia~~~~v~~~~i~r~ 173 (182)
|+.+... |+...+-+|-+|+.--....|||+.+|+|..++.|-
T Consensus 10 Fe~~~~~l~~~~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~Vsrl 54 (101)
T 2w7n_A 10 FQEAIQGLEVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHccCChHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 4444444 466778888888877777799999999999887763
No 142
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=47.63 E-value=4.5 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.586 Sum_probs=14.8
Q ss_pred CceEeCCCceeeeCCCccccccc
Q 030129 22 GDTVCSECGLVLESHSIDETSEW 44 (182)
Q Consensus 22 G~~vC~~CG~Vl~e~~id~~~ew 44 (182)
....|..||..|...-..+..+|
T Consensus 8 ~~~~C~~C~~~i~~~~~~EH~D~ 30 (39)
T 2i5o_A 8 DQVPCEKCGSLVPVWDMPEHMDY 30 (39)
T ss_dssp CEEECTTTCCEEEGGGHHHHHHH
T ss_pred CCcccccccCcCCcccccchhhH
Confidence 34789999999875444443444
No 143
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=46.80 E-value=8.5 Score=26.86 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=25.6
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+.
T Consensus 9 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 42 (105)
T 3mao_A 9 FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTET 42 (105)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESCC
T ss_pred CCCEEEEcCCCCCccccCCcccCCCCCChhhccc
Confidence 3689999999998874 4446888899999863
No 144
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=46.00 E-value=4.2 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=14.9
Q ss_pred EeCCCCceEeCCCceeee
Q 030129 17 FDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 17 ~D~~~G~~vC~~CG~Vl~ 34 (182)
+|..+|.++|..||....
T Consensus 103 ~~v~eg~L~C~~cg~~YP 120 (141)
T 2j6a_A 103 TSIAEGEMKCRNCGHIYY 120 (141)
T ss_dssp EEEEEEEEECTTTCCEEE
T ss_pred eeccCCEEECCCCCCccc
Confidence 456789999999999863
No 145
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.93 E-value=8 Score=27.84 Aligned_cols=12 Identities=25% Similarity=1.118 Sum_probs=10.7
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 93 HliC~~Cg~v~~ 104 (145)
T 2fe3_A 93 HAICENCGKIVD 104 (145)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEEE
Confidence 489999999986
No 146
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=45.58 E-value=8.6 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=19.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
..|+.|+.... .......+|..||.+..
T Consensus 11 ~~Cw~C~~~~~---~~~~~~~fC~~c~~~q~ 38 (207)
T 3bvo_A 11 PRCWNCGGPWG---PGREDRFFCPQCRALQA 38 (207)
T ss_dssp CBCSSSCCBCC---SSCSCCCBCTTTCCBCC
T ss_pred CCCCCCCCCcc---cccccccccccccccCC
Confidence 56999996211 12456799999998864
No 147
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=45.34 E-value=10 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=25.7
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-+|.|--|.+|.+.
T Consensus 69 ~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~p 102 (164)
T 3cxk_A 69 EDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKP 102 (164)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEccCCCccccCCchhccCCCCCcccCcc
Confidence 4679999999998874 4446888999999864
No 148
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=45.12 E-value=6.1 Score=26.29 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=5.5
Q ss_pred CCCCCCCCCC
Q 030129 2 TDAFCSDCKK 11 (182)
Q Consensus 2 ~~~~Cp~Cg~ 11 (182)
...-|.+|+.
T Consensus 22 ~~rAC~~C~~ 31 (81)
T 3p8b_A 22 SEKACRHCHY 31 (81)
T ss_dssp CCEEETTTCB
T ss_pred hHHHHhhCCC
Confidence 3345666663
No 149
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.89 E-value=12 Score=25.47 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 030129 4 AFCSDCKKH 12 (182)
Q Consensus 4 ~~Cp~Cg~~ 12 (182)
..||.|+..
T Consensus 46 ~~C~~C~G~ 54 (104)
T 2ctt_A 46 QHCHYCGGS 54 (104)
T ss_dssp EECSSSSSS
T ss_pred ccCCCCCCC
Confidence 457777763
No 150
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=44.80 E-value=11 Score=28.03 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=25.7
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFAN 49 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~ 49 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+
T Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (154)
T 3hcj_A 46 KLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFA 78 (154)
T ss_dssp CSSEEEEETTTCCEEEEECTTCCCCTTSSTTEE
T ss_pred CCCEEEEccCCCCccccCcccccCCCCCccccc
Confidence 4789999999998774 556788899999975
No 151
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=44.49 E-value=12 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+.
T Consensus 38 ~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~p 71 (144)
T 3e0o_A 38 KEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKP 71 (144)
T ss_dssp CCSEEEEETTTCCEEEETTTBCCCTTSSCEESCC
T ss_pred CCCEEEEeCCCCcccccCcccccCCCCCcccCch
Confidence 4789999999998875 4456888999999863
No 152
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=44.21 E-value=5.9 Score=25.56 Aligned_cols=19 Identities=26% Similarity=0.899 Sum_probs=11.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (182)
.-|.+|.. ++ .+..|.+||
T Consensus 12 ~AC~~C~~---~~-----~~~~CPnC~ 30 (69)
T 1ryq_A 12 KACRHCHY---IT-----SEDRCPVCG 30 (69)
T ss_dssp EEETTTCB---EE-----SSSSCTTTC
T ss_pred hhHHhCCc---cc-----cCCcCCCcc
Confidence 45777774 33 245688887
No 153
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=43.95 E-value=20 Score=22.72 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
....|..|+.. +..-.-.--|..||.|+=
T Consensus 10 ~~~~C~~C~~~----F~~~~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 10 DSDACMICSKK----FSLLNRKHHCRSCGGVFC 38 (73)
T ss_dssp CCSBCTTTCCB----CBTTBCCEECTTTCCEEC
T ss_pred cCCcccCCCCc----cCCccccccCCCCCEEEc
Confidence 34579999862 233455678888888874
No 154
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=43.76 E-value=11 Score=26.98 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=13.8
Q ss_pred CCCCC-CCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 4 AFCSD-CKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 4 ~~Cp~-Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
.+|+. ||.. -.+.....|.++| ||.-++.
T Consensus 8 YkC~~~CGni-vev~~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 8 FLQKESAGFF-LGMDAPAGSSVAC--GSEVLRA 37 (128)
T ss_dssp ECC-----CE-EEESCCTTCEEEE--TTEEEEC
T ss_pred EECCCCCCCE-EEEEcCCCcceee--cCccccc
Confidence 36999 9852 1122245566677 8887654
No 155
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=43.69 E-value=11 Score=27.42 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=16.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
.+|+.||. +.+-+. .+|..||.-
T Consensus 48 ~rC~~CG~---~~~PPr---~~Cp~C~s~ 70 (145)
T 3irb_A 48 SKCSKCGR---IFVPAR---SYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESCC---SEETTTTEE
T ss_pred EEeCCCCc---EEcCch---hhCcCCCCC
Confidence 47999996 344433 689999964
No 156
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=43.60 E-value=28 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHhc
Q 030129 112 IATMSDRIGQMRYIRRWKIKSLVEAE 137 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~~i~k~a~~~ 137 (182)
...||.+||++...+.+.||++..++
T Consensus 32 a~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 32 AISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 46789999999988888999888776
No 157
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.44 E-value=9.2 Score=27.75 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=10.8
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 99 HliC~~Cg~v~~ 110 (150)
T 2xig_A 99 HIICLHCGKIIE 110 (150)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999986
No 158
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=43.39 E-value=8.4 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=18.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||....--....-|-.+|.+|.-|
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~Csgi 54 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSCSGS 54 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHHHHH
T ss_pred CcCCCCCCCCCCceeeccCEEEchhccch
Confidence 45777876333233446677777777665
No 159
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.35 E-value=9.6 Score=27.49 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.7
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 90 HliC~~Cg~v~~ 101 (145)
T 3eyy_A 90 HLVCRDCTNVIE 101 (145)
T ss_dssp EEEESSSSCEEE
T ss_pred EEEECCCCCEEE
Confidence 499999999985
No 160
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=43.00 E-value=7.1 Score=23.33 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=18.0
Q ss_pred CCCCCCCCC----ce-eEeCCCCceEeCCCceeee
Q 030129 5 FCSDCKKHT----EV-VFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 5 ~Cp~Cg~~~----~i-v~D~~~G~~vC~~CG~Vl~ 34 (182)
.|+.|+..- .+ ........+.|..||..+.
T Consensus 16 ~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred cCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 589998510 00 1233445688999998764
No 161
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.99 E-value=9.4 Score=27.69 Aligned_cols=12 Identities=50% Similarity=1.102 Sum_probs=10.7
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 90 HliC~~Cg~v~~ 101 (150)
T 2w57_A 90 HLVCLDCGEVIE 101 (150)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 489999999986
No 162
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.88 E-value=9 Score=28.35 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
..|-+|+...+--....-|-.+|.+|.-|-
T Consensus 39 ~~CaDCga~~P~WaS~nlGvfiC~~CSgiH 68 (147)
T 3dwd_A 39 NVCFECGAFNPQWVSVTYGIWICLECSGRH 68 (147)
T ss_dssp TBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CccCCCCCCCCCeEEecccEeEhHhhChHH
Confidence 468888864333345567888888887653
No 163
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=42.50 E-value=12 Score=23.39 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=12.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..||+||. . .. --.+|.+||.-
T Consensus 31 ~~c~~cGe-~--~~----~H~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKA-M--KP----PHTVCPECGYY 52 (60)
T ss_dssp EECTTTCC-E--EC----TTSCCTTTCEE
T ss_pred eECCCCCC-e--ec----ceEEcCCCCcC
Confidence 35777775 1 11 12578888854
No 164
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=42.45 E-value=7.9 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=16.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 37 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 65 (138)
T 2owa_A 37 RTCFDCESRNPTWLSLSFAVFICLNCSSD 65 (138)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHH
T ss_pred CcCCCCcCCCCCeEEecCCEEEhHhhhHH
Confidence 35777775322223345677777777655
No 165
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=42.26 E-value=8 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.625 Sum_probs=17.9
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 28 ~~CaDCg~~~P~WaS~n~GvfiC~~Csgi 56 (134)
T 2iqj_A 28 KFCADCQSKGPRWASWNIGVFICIRCAGI 56 (134)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHH
T ss_pred CcCCcCcCCCCCeEEecCCEEEhHhhhHH
Confidence 35777876332233446777777777665
No 166
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=42.22 E-value=9.6 Score=20.66 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=10.7
Q ss_pred CCCceEeCCCcee
Q 030129 20 SAGDTVCSECGLV 32 (182)
Q Consensus 20 ~~G~~vC~~CG~V 32 (182)
..|+-+|..||.+
T Consensus 3 ~~gDW~C~~C~~~ 15 (33)
T 2k1p_A 3 SANDWQCKTCSNV 15 (33)
T ss_dssp SSSSCBCSSSCCB
T ss_pred CCCCcccCCCCCc
Confidence 4688999999877
No 167
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.09 E-value=10 Score=27.17 Aligned_cols=12 Identities=42% Similarity=0.980 Sum_probs=10.7
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 87 HliC~~Cg~v~~ 98 (139)
T 3mwm_A 87 HLVCRACGKAVE 98 (139)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEee
Confidence 399999999986
No 168
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.66 E-value=17 Score=25.31 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=17.1
Q ss_pred CCCCCCCCCCceeEeCCCCce-EeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDT-VCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~-vC~~CG~V 32 (182)
.+|++||. .+ ....-.. .|+.||.-
T Consensus 74 ~~C~~CG~--~~--e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSH--VF--KPNALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSC--EE--CSCCSTTCCCSSSSSC
T ss_pred EEcCCCCC--EE--eCCCCCCCcCccccCC
Confidence 46999996 22 2233456 89999977
No 169
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=41.17 E-value=18 Score=24.98 Aligned_cols=35 Identities=23% Similarity=0.618 Sum_probs=22.9
Q ss_pred CCCCCCCCCCceeE-----eCCCCc------eEeCCCceeeeCCCc
Q 030129 4 AFCSDCKKHTEVVF-----DHSAGD------TVCSECGLVLESHSI 38 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~-----D~~~G~------~vC~~CG~Vl~e~~i 38 (182)
.-|..|++..-+.+ ..+.|+ -+|.+|+-||.++-.
T Consensus 27 ~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~HvIA~HeY 72 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEY 72 (106)
T ss_dssp CCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEE
T ss_pred hhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceEeeeeeE
Confidence 35999997432222 123344 579999999998754
No 170
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=41.09 E-value=16 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.721 Sum_probs=19.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|++ .| . .| +-|.+|+...-.+
T Consensus 15 t~C~~C~k--~i-~---~G-~kC~~Ck~~cH~k 40 (49)
T 1kbe_A 15 QVCNVCQK--SM-I---FG-VKCKHCRLKCHNK 40 (49)
T ss_dssp CCCSSSCC--SS-C---CE-EEETTTTEEESSS
T ss_pred cCccccCc--ee-E---Cc-CCCCCCCCccchh
Confidence 67999986 23 3 56 7899999886433
No 171
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=41.04 E-value=11 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.7
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+.
T Consensus 39 ~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 72 (146)
T 3hcg_A 39 FKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRP 72 (146)
T ss_dssp CCSEEEEETTTCCEEEEGGGEECCSSSSCEESSC
T ss_pred CCCEEEEecCCCcccccCcccccCCCCChhhccc
Confidence 4789999999998874 3446888899999853
No 172
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.83 E-value=11 Score=26.58 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.1
Q ss_pred CceEeCCCceeee
Q 030129 22 GDTVCSECGLVLE 34 (182)
Q Consensus 22 G~~vC~~CG~Vl~ 34 (182)
.-.+|..||.|++
T Consensus 82 ~HliC~~Cg~v~~ 94 (131)
T 2o03_A 82 HHLVCRSCGSTIE 94 (131)
T ss_dssp EEEEETTTCCEEE
T ss_pred CEEEeCCCCCEEE
Confidence 3589999999986
No 173
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=40.43 E-value=6.9 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=16.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 38 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 66 (144)
T 2p57_A 38 KACFDCGAKNPSWASITYGVFLCIDCSGV 66 (144)
T ss_dssp GBCTTTCCBSCCEEEGGGTEEECHHHHHH
T ss_pred CcCCCCcCCCCCeEEeccCEEEhhhchHH
Confidence 35777776322223445677777777655
No 174
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=40.31 E-value=11 Score=27.81 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=10.6
Q ss_pred ceEeCCCceeee
Q 030129 23 DTVCSECGLVLE 34 (182)
Q Consensus 23 ~~vC~~CG~Vl~ 34 (182)
-.+|..||.|++
T Consensus 107 HliC~~CG~v~e 118 (162)
T 4ets_A 107 HMICKNCGKIIE 118 (162)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 399999999986
No 175
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=40.15 E-value=88 Score=24.55 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCChHHHH----HH--HHHHHHH-hc-c---CHHHHHHHHHHHHHhhCC-------HHHHHhcCCCcee
Q 030129 108 AFKTIATMSDRIGQMRYIR----RW--KIKSLVE-AE-I---KTHYWLLACTLLVDKKTS-------HALLRKSALSPME 169 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~----~~--~i~k~a~-~~-l---~~~~v~AAclY~acr~~~-------~eia~~~~v~~~~ 169 (182)
++..+..+...++++.... .. .+...+. +. | +|..+||||+..+..... ..++..+|+++.+
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~~~~~~L~~~t~~~~~~ 228 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRIDGVCKSLYITKEE 228 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchhhHHHHHHHHHCcCHHH
Confidence 6778888888888875421 22 2223332 22 3 999999999766653321 3456778887765
Q ss_pred eec
Q 030129 170 LQR 172 (182)
Q Consensus 170 i~r 172 (182)
+-.
T Consensus 229 l~~ 231 (252)
T 1f5q_B 229 LHQ 231 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 176
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=39.34 E-value=26 Score=20.05 Aligned_cols=31 Identities=19% Similarity=0.715 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCceeeeC
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLES 35 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e 35 (182)
....|..|++ ++.-...--+.|.+|++++-.
T Consensus 10 ~pt~C~~C~~---~l~g~~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 10 SPTFCDHCGS---LLWGLVKQGLKCEDCGMNVHH 40 (50)
T ss_dssp SCCBCTTTCC---BCCSSSSCEEEETTTCCEECH
T ss_pred CCCCcCCCCc---eeeccCCccCEeCCCCCeECH
Confidence 3467999986 233211223789999988753
No 177
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=39.17 E-value=30 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.697 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCceeEeC-CCCceEeCCCceeeeCCCcc
Q 030129 2 TDAFCSDCKKHTEVVFDH-SAGDTVCSECGLVLESHSID 39 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~-~~G~~vC~~CG~Vl~e~~id 39 (182)
...+|..|++ ++.-. ..| +.|.+|++++-.+-..
T Consensus 22 ~pt~C~~C~~---~l~Gl~~qg-~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 22 SPTFCEHCGT---LLWGLARQG-LKCDACGMNVHHRCQT 56 (65)
T ss_dssp SCCBCSSSCC---BCCCSSSCS-EEESSSCCEECTTTTT
T ss_pred CCcCchhcCh---hheecCCcc-cccCCCCCccCHhHHh
Confidence 3467999986 23322 334 7899999998655543
No 178
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=38.89 E-value=15 Score=23.41 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=13.7
Q ss_pred CCCCceEeCCCceeee
Q 030129 19 HSAGDTVCSECGLVLE 34 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~ 34 (182)
.+.|...|.-||+.+.
T Consensus 36 ~~~g~~~CpYCg~~f~ 51 (67)
T 2jrr_A 36 EDTGWVECPYCDCKYV 51 (67)
T ss_dssp TTTSEEEETTTTEEEE
T ss_pred CCCCeEECCCCCCEEE
Confidence 3579999999999874
No 179
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.38 E-value=8.9 Score=28.38 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=15.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+|+...+--....-|-.+|.+|.-|
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 58 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFLCIDCSGS 58 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEECCHHHHHH
T ss_pred CcCCCCcCCCCCcEEeccCEEEchhcchh
Confidence 35666665322222335566666666554
No 180
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=38.09 E-value=13 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (182)
..||.|++...++. -.|..|+
T Consensus 10 ~~C~~C~GsG~~i~------~~C~~C~ 30 (53)
T 3lcz_A 10 TTCPNCNGSGREEP------EPCPKCL 30 (53)
T ss_dssp EECTTTTTSCEETT------EECTTTT
T ss_pred ccCcCCcccccCCC------CcCCCCC
Confidence 46999987555442 5677774
No 181
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.08 E-value=9 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=17.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~Csgi 58 (141)
T 2crr_A 30 KYCADCEAKGPRWASWNIGVFICIRCAGI 58 (141)
T ss_dssp SSCSSSCCSSCCSEETTTTEECCHHHHHH
T ss_pred CcCCCCCCCCCCeEEeccCeEEhhhhhHh
Confidence 35777776322223446677777777655
No 182
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=38.01 E-value=17 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.661 Sum_probs=16.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
.+|+.||. +.+-+. .+|..||.-
T Consensus 48 ~rC~~CG~---~~fPPr---~~Cp~C~s~ 70 (145)
T 2gnr_A 48 SKCSKCGR---IFVPAR---SYCEHCFVK 70 (145)
T ss_dssp EECTTTCC---EEESCC---SEETTTTEE
T ss_pred EEECCCCc---EEeCCC---CCCCCCCCC
Confidence 46999996 344433 589999975
No 183
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.95 E-value=14 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.697 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCceeEeCCCCceEeCCCce
Q 030129 2 TDAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 2 ~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (182)
.+..|..||+. .. . --.-.|..||.
T Consensus 16 tH~lCrRCG~~-sy--H--~qK~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRV-SY--N--VKKGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSB-CE--E--TTTTEETTTCT
T ss_pred ceeeecccCcc-hh--c--cccccccccCC
Confidence 35678888873 22 2 23578888886
No 184
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.65 E-value=24 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=17.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|.+|+.. .+..+|-.||.|.=.+
T Consensus 25 ~~C~~C~~~--------~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 25 QPCGDCGTI--------QENWVCLSCYQVYCGR 49 (109)
T ss_dssp CCCTTTCCC--------SSEEEETTTCCEEECT
T ss_pred CcCccccCC--------CCeeeeeecCccccCC
Confidence 358888863 2357899999997433
No 185
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=34.74 E-value=14 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.2
Q ss_pred ceeEeCCCCceEeCCCceeee
Q 030129 14 EVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 14 ~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
++-.|...+...|..||..+.
T Consensus 9 ~~~~~~~~~~~~C~~CG~~i~ 29 (49)
T 2l8e_A 9 SAELDKKANLLKCEYCGKYAP 29 (49)
T ss_dssp TGGGGGGCSEEECTTTCCEEE
T ss_pred cccccccCCCCcChhccCccc
Confidence 344455667788999999885
No 186
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.33 E-value=29 Score=22.36 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCChHHHHHH
Q 030129 110 KTIATMSDRIGQMRYIRRW 128 (182)
Q Consensus 110 ~~I~~i~~~L~L~~~v~~~ 128 (182)
..|.+||..+|||..|+..
T Consensus 33 eei~~LA~~lgL~~~VVrV 51 (71)
T 2da7_A 33 DELLKISIAVGLPQEFVKE 51 (71)
T ss_dssp HHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 5699999999999988765
No 187
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=34.00 E-value=19 Score=20.96 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=11.7
Q ss_pred CCCCceEeCCCceee
Q 030129 19 HSAGDTVCSECGLVL 33 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl 33 (182)
...+...|..||.|=
T Consensus 2 ~~~~~~~CE~CG~~g 16 (43)
T 2w0t_A 2 SGSEPAVCEMCGIVG 16 (43)
T ss_dssp CSCCEEECTTTCCEE
T ss_pred CCCceehhhhhcCcc
Confidence 345678999999884
No 188
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=32.97 E-value=23 Score=20.99 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 1 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 1 m~~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
|...+|-.||..-+-.+=.---.+-|.-||.=
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcE
Confidence 45566777775211000002234667777753
No 189
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=32.88 E-value=14 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+|+...+--....-|-.+|.+|.-|
T Consensus 23 ~~CaDCga~~P~WaS~nlGvflCi~CSGi 51 (163)
T 3sub_A 23 NKCFDCGISNPDWVSVNHGIFLCINCSGV 51 (163)
T ss_dssp GBCTTTCCBSCCEEETTTTEEECHHHHHH
T ss_pred CccccCCCCCCCeEEecCCeeEHHhhhHH
Confidence 45777776322233446677777777655
No 190
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.82 E-value=14 Score=20.21 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.1
Q ss_pred CHHHHHhcCCCceeeecee
Q 030129 156 SHALLRKSALSPMELQRRK 174 (182)
Q Consensus 156 ~~eia~~~~v~~~~i~r~~ 174 (182)
..+||+.++++..+|-++.
T Consensus 24 ~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4899999999999887764
No 191
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.81 E-value=17 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.543 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC--Cceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSE--CGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~--CG~Vl 33 (182)
..||.|+. .|..+..-.-+.|.. ||.-+
T Consensus 7 k~CP~C~~--~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 7 KECPKCHV--TIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCTTTCC--CCSSCCSCCSSSCCSSGGGSCC
T ss_pred eECcCCCC--eeEeCCCCCcEEECCCCcCCEE
Confidence 57999996 455565556688887 87654
No 192
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=32.59 E-value=15 Score=22.77 Aligned_cols=24 Identities=29% Similarity=0.883 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCce
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGL 31 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~ 31 (182)
+..|..||+ .. +. --.-.|..||.
T Consensus 17 H~~CrRCG~-~s--yH--~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGE-KS--YH--TKKKVCSSCGF 40 (57)
T ss_dssp EEECTTTCS-EE--EE--TTTTEETTTCT
T ss_pred cccccccCC-hh--hh--ccccccccccC
Confidence 346888886 22 22 23578888886
No 193
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=32.53 E-value=12 Score=30.79 Aligned_cols=27 Identities=22% Similarity=0.664 Sum_probs=19.7
Q ss_pred CCCCCCCCCCceeEeCC--CCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHS--AGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~--~G~~vC~~CG~Vl 33 (182)
.+||.|+. .++..+ .-..||..||.=.
T Consensus 25 ~kc~~~~~---~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 25 TKCDSCGQ---VLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp ECCTTTCC---CEETTHHHHTTTBCTTTCCBC
T ss_pred Hhhhhccc---hhhHHHHHHHhCCCCCCCCCC
Confidence 47999996 345443 5679999999754
No 194
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=31.86 E-value=24 Score=32.36 Aligned_cols=23 Identities=35% Similarity=0.791 Sum_probs=12.9
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCceeee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVLE 34 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~ 34 (182)
.||.|+. . ...|+ .|..||.+++
T Consensus 142 tcP~c~~-~-----~~~Gd-~c~~~G~~l~ 164 (722)
T 1rqg_A 142 TCPYCGA-E-----DQKGD-QCEVCGRPLT 164 (722)
T ss_dssp BCSSSCC-S-----CCCTT-TCSSSCCCCC
T ss_pred ccCccCC-c-----cCCcc-hhhhcccccC
Confidence 4788875 1 23454 3666666653
No 195
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=31.65 E-value=38 Score=21.93 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=19.1
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 20 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKE----FSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCB----CBTTBCCEECTTTCCEECSG
T ss_pred CcccCcCCc----ccCccccccCCCCCCEEChH
Confidence 368999862 33445567788888887543
No 196
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=30.44 E-value=42 Score=20.51 Aligned_cols=31 Identities=19% Similarity=0.706 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
...|..|+. ++.-...--+.|.+|++.+-.+
T Consensus 20 pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~ 50 (65)
T 3uej_A 20 PTFCDHCGS---LLWGLVKQGLKCEDCGMNVHHK 50 (65)
T ss_dssp CCBCTTTCC---BCCSSSSCEEEETTTCCEECHH
T ss_pred CCcccccCh---hhhccCceeeECCCCCCeEchh
Confidence 467999985 2322222347899999887543
No 197
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=30.39 E-value=24 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.4
Q ss_pred CceeEeC--CCCceEeCCCceeee
Q 030129 13 TEVVFDH--SAGDTVCSECGLVLE 34 (182)
Q Consensus 13 ~~iv~D~--~~G~~vC~~CG~Vl~ 34 (182)
+.+-.+- ..|...|.-||+.+.
T Consensus 41 PrVyL~ld~~~g~~~CpYCg~~f~ 64 (80)
T 2jvm_A 41 PRVWLSIPHETGFVECGYCDRRYI 64 (80)
T ss_dssp CCEEEECCTTTCEEECSSSSCEEE
T ss_pred CEEEEEccCCCCeEECCCCCCEEE
Confidence 4444454 579999999999873
No 198
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.29 E-value=91 Score=20.00 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=18.9
Q ss_pred HHHHHHHH---------HHHHHHHhCChHHHHHH
Q 030129 104 GLILAFKT---------IATMSDRIGQMRYIRRW 128 (182)
Q Consensus 104 ~L~~a~~~---------I~~i~~~L~L~~~v~~~ 128 (182)
.|..+|.. +..++..||||..++..
T Consensus 21 ~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 21 ILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 44556655 88999999999977654
No 199
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=30.25 E-value=75 Score=25.99 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCChHHHHHH---HHHHHHHhc--c-----CHHHHHHHHHHHHHhhC------CHHHHHhcCCCceeee
Q 030129 108 AFKTIATMSDRIGQMRYIRRW---KIKSLVEAE--I-----KTHYWLLACTLLVDKKT------SHALLRKSALSPMELQ 171 (182)
Q Consensus 108 a~~~I~~i~~~L~L~~~v~~~---~i~k~a~~~--l-----~~~~v~AAclY~acr~~------~~eia~~~~v~~~~i~ 171 (182)
..++|.+|...-.++..+.-. .|.|..... + +..-+..+||-+|.+.. ++..|++.|++..+|.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHH
Confidence 456777887777887766543 444444422 2 78889999999999865 3888999999887765
Q ss_pred c
Q 030129 172 R 172 (182)
Q Consensus 172 r 172 (182)
+
T Consensus 157 ~ 157 (293)
T 2pmi_B 157 I 157 (293)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=30.10 E-value=26 Score=21.06 Aligned_cols=21 Identities=29% Similarity=0.843 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECG 30 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (182)
..||.|+....++ ...|..|+
T Consensus 10 ~~C~~C~GsG~~~------~~~C~~C~ 30 (53)
T 2bx9_A 10 VACPKCERAGEIE------GTPCPACS 30 (53)
T ss_dssp EECTTTTTSSEET------TEECTTTT
T ss_pred ccCCCCcceeccC------CCCCccCC
Confidence 3699998844332 25677774
No 201
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.73 E-value=26 Score=16.08 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=7.8
Q ss_pred ceEeCCCceee
Q 030129 23 DTVCSECGLVL 33 (182)
Q Consensus 23 ~~vC~~CG~Vl 33 (182)
.+.|..||..+
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2m0f_A 2 PLKCRECGKQF 12 (29)
T ss_dssp CEECTTTSCEE
T ss_pred CccCCCCCCcc
Confidence 36788888765
No 202
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=29.53 E-value=9.2 Score=23.72 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=14.6
Q ss_pred HHHHHhcCCCceeeece
Q 030129 157 HALLRKSALSPMELQRR 173 (182)
Q Consensus 157 ~eia~~~~v~~~~i~r~ 173 (182)
.|+|+.+|||..||-++
T Consensus 6 ~e~a~~LgvS~~Tl~rw 22 (68)
T 1j9i_A 6 KQLADIFGASIRTIQNW 22 (68)
T ss_dssp HHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHH
Confidence 68999999999998654
No 203
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=29.05 E-value=14 Score=26.33 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=13.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..||+|+..+.+-.+.-.....|..|+.-
T Consensus 15 ~~c~~c~~~~~~~~~r~~~~~~~~~~~~~ 43 (155)
T 2ppt_A 15 LTCLACGQANKVPSDRLAAGPKCGICGAG 43 (155)
T ss_dssp EECTTTCCEEEEEGGGTTSCCBCTTTCCB
T ss_pred EECccccccccCCcccccCCCCCCcCCcc
Confidence 35677765322211222334456666544
No 204
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=28.81 E-value=12 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=15.4
Q ss_pred CCCCCCCceeEeCCCCceEeCCC
Q 030129 7 SDCKKHTEVVFDHSAGDTVCSEC 29 (182)
Q Consensus 7 p~Cg~~~~iv~D~~~G~~vC~~C 29 (182)
|.|++ +--..|.-+|-..|+.|
T Consensus 6 ~~C~K-PC~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 6 PICNK-PCKTHDDCSGAWFCQAC 27 (38)
T ss_dssp TTTTC-BCSSSSSSCCCSSCCEE
T ss_pred cccCC-CccCccccccchHHHHH
Confidence 56776 33345778888999887
No 205
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=28.54 E-value=23 Score=19.08 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=12.0
Q ss_pred CCCCCceeEeCCCCceEeC
Q 030129 9 CKKHTEVVFDHSAGDTVCS 27 (182)
Q Consensus 9 Cg~~~~iv~D~~~G~~vC~ 27 (182)
||+.......+.-|.++|-
T Consensus 12 cgkherptlpyncgkyicc 30 (36)
T 2b5b_A 12 CGKHERPTLPYNCGKYICC 30 (36)
T ss_dssp CCSSCCSSCSSSBCCSSCS
T ss_pred ccCcCCCCcCccCCceEEe
Confidence 7775444556677777773
No 206
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.04 E-value=30 Score=22.39 Aligned_cols=18 Identities=6% Similarity=0.158 Sum_probs=14.5
Q ss_pred CHHHHHhcCCCceeeece
Q 030129 156 SHALLRKSALSPMELQRR 173 (182)
Q Consensus 156 ~~eia~~~~v~~~~i~r~ 173 (182)
..|||+.+|+++.++.++
T Consensus 56 ~~eIA~~lgis~~tV~~~ 73 (92)
T 3hug_A 56 TAQIATDLGIAEGTVKSR 73 (92)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 489999999998877654
No 207
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.59 E-value=46 Score=25.54 Aligned_cols=31 Identities=26% Similarity=0.697 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~ 37 (182)
...|+.|+. . +..-.-.--|..||.|+=..-
T Consensus 161 ~~~C~~C~~--~--F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRV--E--FTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCC--B--CCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCC--c--cCCcccccccCCcCCEEChHH
Confidence 357999986 2 233456688999999985443
No 208
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=27.52 E-value=39 Score=28.98 Aligned_cols=30 Identities=20% Similarity=0.576 Sum_probs=18.8
Q ss_pred CCCCCCCCCCce---eEe-CCCCc-----eEeCCCceee
Q 030129 4 AFCSDCKKHTEV---VFD-HSAGD-----TVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~i---v~D-~~~G~-----~vC~~CG~Vl 33 (182)
..||.|+..... .++ |--++ ..|..||.=-
T Consensus 221 s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 221 TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp ECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 369999974221 112 34555 6799999853
No 209
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.24 E-value=48 Score=21.37 Aligned_cols=35 Identities=29% Similarity=0.685 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCccc
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDE 40 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~ 40 (182)
..+|..|+. ++.-...--+.|.+|++++-..-.+.
T Consensus 28 pt~C~~C~~---~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 28 PTFCSVCKD---FVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp CCCCSSSCC---CCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CcChhhcCh---hhccccccccccCCcCCeeChhhhhh
Confidence 467999986 23322122378999999987666543
No 210
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.22 E-value=24 Score=24.51 Aligned_cols=10 Identities=40% Similarity=1.235 Sum_probs=6.3
Q ss_pred eEeCCCceee
Q 030129 24 TVCSECGLVL 33 (182)
Q Consensus 24 ~vC~~CG~Vl 33 (182)
..|.+||.++
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 5566666665
No 211
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.95 E-value=50 Score=21.49 Aligned_cols=35 Identities=14% Similarity=0.561 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCccc
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDE 40 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~ 40 (182)
..+|..|++ ++.-...--+.|.+|++++-..-.+.
T Consensus 28 pt~C~~C~~---~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 28 PTFCDHCGS---LLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp CCBCSSSCC---BCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CcCCcccCc---cccccccCCCcCCCcCCccCHhHHhh
Confidence 467999986 23322122377999999987666543
No 212
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.85 E-value=44 Score=23.53 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 70 ~~C~~C~~~----Fs~~~RrHHCR~CG~vfC~~ 98 (125)
T 1joc_A 70 QNCMACGKG----FSVTVRRHHCRQCGNIFCAE 98 (125)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CCCcCcCCc----cccccccccCCCCCeEEChH
Confidence 469999862 23334557788888887443
No 213
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.77 E-value=72 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHhc
Q 030129 112 IATMSDRIGQMRYIRRWKIKSLVEAE 137 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~~i~k~a~~~ 137 (182)
..+||..||++...++..||++..+.
T Consensus 30 ~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45789999999987777888887766
No 214
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=26.67 E-value=18 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+||...+--....-|-.+|.+|.-|
T Consensus 38 ~~c~dc~~~~~~~~~~~~~~~~c~~c~~~ 66 (329)
T 3o47_A 38 NVCFECGAFNPQWVSVTYGIWICLECSGR 66 (329)
T ss_dssp TBCTTTCCBSCCEEEGGGTEEECHHHHHH
T ss_pred CcCCCCCCCCCCeEEecCCEEEChhhhhh
Confidence 57999997433344557899999998754
No 215
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=26.66 E-value=16 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.9
Q ss_pred eEeCCCceeeeC
Q 030129 24 TVCSECGLVLES 35 (182)
Q Consensus 24 ~vC~~CG~Vl~e 35 (182)
+.|-.||.|+.+
T Consensus 5 VRCFTCGkvi~~ 16 (70)
T 1twf_J 5 VRCFSCGKVVGD 16 (70)
T ss_dssp SBCTTTCCBCTT
T ss_pred eecCCCCCChHH
Confidence 579999999854
No 216
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.46 E-value=54 Score=21.26 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=19.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 22 ~~C~~C~~~----Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 22 PACNGCGCV----FTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp CBCTTTCCB----CCTTSCCEECTTTCCEECTG
T ss_pred CCCcCcCCc----cccchhcccccCCCcEEChH
Confidence 468899862 33344567788888887433
No 217
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.24 E-value=36 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC---CceeeeCCCcc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~---CG~Vl~e~~id 39 (182)
..||.||+ .++.....-...|++ |-.-+-++++.
T Consensus 406 ~~CP~Cgs--~~~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (586)
T 4glx_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (586)
T ss_dssp SBCTTTCC--BEECCTTCSCCEESCGGGCHHHHHHHHHH
T ss_pred CcCCCCCC--chhhhhcccccEeCCCcCcHHHHHhHHHh
Confidence 57999996 455555556688985 87776666543
No 218
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=25.85 E-value=42 Score=30.68 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCC---CceeeeCCCcc
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSE---CGLVLESHSID 39 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~---CG~Vl~e~~id 39 (182)
..||.||+ .++.....-.+.|.+ |-.-+-++++.
T Consensus 406 ~~CP~Cgs--~l~~~~~~~~~rC~n~~~Cpaq~~~~l~h 442 (671)
T 2owo_A 406 THCPVCGS--DVERVEGEAVARCTGGLICGAQRKESLKH 442 (671)
T ss_dssp SBCTTTCC--BEEECTTCSCEEECCGGGCHHHHHHHHHH
T ss_pred CCCCCCCC--EeEEecCCEEEECCCCCCCHHHHHHHHHH
Confidence 46999997 455544445678993 87776666653
No 219
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=25.84 E-value=48 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=12.9
Q ss_pred CCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 5 FCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
.|..|+.. ....+|-.||.|-
T Consensus 36 ~C~~C~~~--------~~LwlCL~CG~vg 56 (129)
T 2g45_A 36 KCSKCDMR--------ENLWLNLTDGSIL 56 (129)
T ss_dssp CCSSSSCC--------SSEEEETTTCCEE
T ss_pred cCccccCc--------CceEEeccCCccc
Confidence 46666642 1357777777774
No 220
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.54 E-value=46 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.677 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCcc
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (182)
..+|..|++ ++.-...--+.|.+|++++-..-.+
T Consensus 34 pt~C~~C~~---~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 34 PTFCSVCHE---FVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp CEECSSSCC---EECCTTCCEEECSSSCCEEESGGGS
T ss_pred CcCccccCh---hhccccccccCcCCCCCcCCHhHHh
Confidence 457999985 3432222337899999998765544
No 221
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=25.06 E-value=48 Score=23.07 Aligned_cols=31 Identities=35% Similarity=0.767 Sum_probs=20.5
Q ss_pred CCCCCCCCCCceeEeC-CCCc--eEeCCCceeee
Q 030129 4 AFCSDCKKHTEVVFDH-SAGD--TVCSECGLVLE 34 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~-~~G~--~vC~~CG~Vl~ 34 (182)
..||.|+..+.+-+-. +.|. -+|..||.+|+
T Consensus 74 lv~p~~~k~tRvg~~~~edG~kvRv~kk~g~~i~ 107 (110)
T 3v2d_Y 74 PICPACGKPTRVRKKFLENGKKIRVCAKCGGALD 107 (110)
T ss_dssp EBCTTTCSBCCEEEEECSSCCEEEEESSSCCBCC
T ss_pred EEcCcCCCccEEEEEECCCCcEEEEEecCCCccC
Confidence 3588888755554433 5564 57888888874
No 222
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.95 E-value=54 Score=21.62 Aligned_cols=29 Identities=24% Similarity=0.620 Sum_probs=19.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 21 ~~C~~C~~~----F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 21 PNCMNCQVK----FTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CBCTTTCCB----CCSSSCCEECTTTCCEECGG
T ss_pred CcCcCCCCc----ccchhhCccccCCCCEECCc
Confidence 358999862 23344567888998887543
No 223
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.50 E-value=92 Score=19.68 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHhc
Q 030129 112 IATMSDRIGQMRYIRRWKIKSLVEAE 137 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~~i~k~a~~~ 137 (182)
..+||..||++...+...|+++-.+.
T Consensus 34 ~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 34 AHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 46899999999987777888877665
No 224
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=24.40 E-value=23 Score=31.17 Aligned_cols=10 Identities=0% Similarity=-0.383 Sum_probs=6.9
Q ss_pred HHHHHhcCCC
Q 030129 157 HALLRKSALS 166 (182)
Q Consensus 157 ~eia~~~~v~ 166 (182)
.+|-+.++++
T Consensus 513 eei~~~L~~~ 522 (560)
T 3h99_A 513 ERAEAFLNTE 522 (560)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHcCCC
Confidence 6677777765
No 225
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.40 E-value=50 Score=23.70 Aligned_cols=11 Identities=36% Similarity=1.069 Sum_probs=8.7
Q ss_pred ceEeCCCceee
Q 030129 23 DTVCSECGLVL 33 (182)
Q Consensus 23 ~~vC~~CG~Vl 33 (182)
..||..||..+
T Consensus 80 ~~VC~~C~~~~ 90 (134)
T 1zbd_B 80 KNVCTKCGVET 90 (134)
T ss_dssp CEEETTSEEEC
T ss_pred cccccccCCcc
Confidence 47888898876
No 226
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=24.36 E-value=22 Score=20.53 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.1
Q ss_pred CHHHHHhcCCCceeeece
Q 030129 156 SHALLRKSALSPMELQRR 173 (182)
Q Consensus 156 ~~eia~~~~v~~~~i~r~ 173 (182)
..|||+.+|++..++.++
T Consensus 34 ~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 34 VQQIANALGVSERKVRRY 51 (55)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 489999999999888664
No 227
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=24.35 E-value=15 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=23.2
Q ss_pred CCCCCCCCCCceeEeC----CCC-ceEeCCCceeeeCCCcccc
Q 030129 4 AFCSDCKKHTEVVFDH----SAG-DTVCSECGLVLESHSIDET 41 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~----~~G-~~vC~~CG~Vl~e~~id~~ 41 (182)
..|..|+. . ++. ..+ ...|..||-++..+++..|
T Consensus 122 ~~C~~C~~-~---~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~Fg 160 (249)
T 1m2k_A 122 VRCTSCNN-S---FEVESAPKIPPLPKCDKCGSLLRPGVVWAG 160 (249)
T ss_dssp EEESSSSC-E---EECSSCCCSSSCCBCSSSSSBEEEEECCTT
T ss_pred eEeCCCCC-c---ccchhhccCCCCCCCCCCCCCcCCeEEecC
Confidence 46999985 1 221 223 3689999999988877554
No 228
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.35 E-value=23 Score=24.12 Aligned_cols=7 Identities=29% Similarity=0.895 Sum_probs=5.2
Q ss_pred CCCCCCC
Q 030129 5 FCSDCKK 11 (182)
Q Consensus 5 ~Cp~Cg~ 11 (182)
.||.||+
T Consensus 49 ~CPvCgs 55 (112)
T 1l8d_A 49 KCPVCGR 55 (112)
T ss_dssp ECTTTCC
T ss_pred CCCCCCC
Confidence 5888876
No 229
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=24.29 E-value=49 Score=20.32 Aligned_cols=32 Identities=19% Similarity=0.684 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCC
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~ 37 (182)
..+|..|++ ++.-...--+.|.+|++++-..-
T Consensus 24 pt~C~~C~~---~l~Gl~~qg~~C~~C~~~~Hk~C 55 (66)
T 1y8f_A 24 PTYCYECEG---LLWGIARQGMRCTECGVKCHEKC 55 (66)
T ss_dssp CCCCTTTCC---CCCSSCCEEEEETTTCCEECTTH
T ss_pred CcChhhcCh---hhcccCcceeEcCCCCCeeCHHH
Confidence 467999986 23221122378999999875543
No 230
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=24.11 E-value=44 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.822 Sum_probs=18.9
Q ss_pred CCCCCCCCCceeEeC---CCCc--eEeCCCceeee
Q 030129 5 FCSDCKKHTEVVFDH---SAGD--TVCSECGLVLE 34 (182)
Q Consensus 5 ~Cp~Cg~~~~iv~D~---~~G~--~vC~~CG~Vl~ 34 (182)
.|| ||. .+.+.. ..|+ ..|..|-++|.
T Consensus 32 ~Cr-CGd--~F~it~edL~~ge~iv~C~sCSL~I~ 63 (83)
T 1wge_A 32 PCP-CGD--NFAITKEDLENGEDVATCPSCSLIIK 63 (83)
T ss_dssp CCS-SSS--CEEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred eCC-CCC--EEEECHHHHhCCCEEEECCCCceEEE
Confidence 598 996 344432 4554 78999999984
No 231
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.90 E-value=90 Score=20.45 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhc
Q 030129 110 KTIATMSDRIGQMRYIRRWKIKSLVEAE 137 (182)
Q Consensus 110 ~~I~~i~~~L~L~~~v~~~~i~k~a~~~ 137 (182)
-...+|+..||++...+.+.||++..++
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3457899999999988888888888776
No 232
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.86 E-value=74 Score=20.53 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=17.4
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. + ..-.-.--|..||.|+=..
T Consensus 15 ~~C~~C~~~--F--~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSAT--F--SVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCC--C--CSSSCCEECSSSCCEECTT
T ss_pred CcCcCcCCc--c--ccchhhhhhcCCCcEEChh
Confidence 469999862 2 2234456677777776443
No 233
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=23.72 E-value=36 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCCCceEeCCCceeee--CCCcccccccccccCC
Q 030129 19 HSAGDTVCSECGLVLE--SHSIDETSEWRTFANE 50 (182)
Q Consensus 19 ~~~G~~vC~~CG~Vl~--e~~id~~~ewr~f~~~ 50 (182)
.+.|.++|..||.-|= +.-.|.|--|.+|.+.
T Consensus 205 ~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~ 238 (313)
T 3e0m_A 205 FEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRP 238 (313)
T ss_dssp CCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSC
T ss_pred CCCeEEEecCCCccccCCCccccCCCCCcccCcc
Confidence 4689999999998874 4446888999999863
No 234
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.50 E-value=17 Score=23.81 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=5.8
Q ss_pred eEeCCCceee
Q 030129 24 TVCSECGLVL 33 (182)
Q Consensus 24 ~vC~~CG~Vl 33 (182)
+.|.+||..-
T Consensus 38 I~CnDC~~~s 47 (79)
T 2k2d_A 38 ILCNDCNGRS 47 (79)
T ss_dssp EEESSSCCEE
T ss_pred EECCCCCCCc
Confidence 4566666553
No 235
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.16 E-value=19 Score=19.99 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=15.6
Q ss_pred CHHHHHhcCCCceeeecee
Q 030129 156 SHALLRKSALSPMELQRRK 174 (182)
Q Consensus 156 ~~eia~~~~v~~~~i~r~~ 174 (182)
..+||+.+||+..+|-++.
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 4899999999998887653
No 236
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.95 E-value=13 Score=23.30 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.0
Q ss_pred CHHHHHhcCCCceeeecee
Q 030129 156 SHALLRKSALSPMELQRRK 174 (182)
Q Consensus 156 ~~eia~~~~v~~~~i~r~~ 174 (182)
..|||+.+||+..++.|++
T Consensus 12 ~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 4899999999999987753
No 237
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=22.89 E-value=1.8e+02 Score=19.48 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHhc-cCHHHHHHHHHHHHHhhCCHHHHHhcCCCc
Q 030129 102 DRGLILAFKTIATMSDRIGQMRYIRRW--KIKSLVEAE-IKTHYWLLACTLLVDKKTSHALLRKSALSP 167 (182)
Q Consensus 102 er~L~~a~~~I~~i~~~L~L~~~v~~~--~i~k~a~~~-l~~~~v~AAclY~acr~~~~eia~~~~v~~ 167 (182)
|..+.++...+.+|.+.-.+|.+|+.. +......+. .++..=||.++++ +.||+.-=+++.
T Consensus 9 e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAA~aIs~-----LDeISnDPNmP~ 72 (89)
T 2qsb_A 9 QNLFNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSM-----LDEMANDPNVPA 72 (89)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH-----HHHHHTCTTSCH
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHH-----HHHhhcCCCCCh
Confidence 667788888999999999999999887 555555444 4555555555553 355555444443
No 238
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.61 E-value=61 Score=25.08 Aligned_cols=30 Identities=20% Similarity=0.593 Sum_probs=20.0
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHS 37 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~ 37 (182)
..|..|+.. +..-.-.--|..||.|+=..-
T Consensus 165 ~~C~~C~~~----F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 165 EECHRCRVQ----FGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp SBCTTTCCB----CBTTBCCEECTTTCCEECTTT
T ss_pred CCCcCcCCC----CCccccccccCCCcCEeChhh
Confidence 469999862 233445678888888875443
No 239
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.40 E-value=62 Score=18.55 Aligned_cols=30 Identities=30% Similarity=0.713 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCceeeeCCCcc
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSID 39 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 39 (182)
..+|..|++ ++. . -+.|.+||+.+-..-.+
T Consensus 14 pt~C~~C~~---~l~---q-G~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 14 LAFCDICQK---FLL---N-GFRCQTCGYKFHEHCST 43 (52)
T ss_dssp CEECTTSSS---EEC---S-EEECTTTTCCBCSTTSS
T ss_pred CcCCCCccc---ccc---c-CCEeCCCCCeEChhHHh
Confidence 357999985 343 3 47999999988655443
No 240
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=21.82 E-value=18 Score=29.35 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=24.2
Q ss_pred CCCCCCCCCCceeEeC--CCCceEeCCCce--------eeeCCCcccc
Q 030129 4 AFCSDCKKHTEVVFDH--SAGDTVCSECGL--------VLESHSIDET 41 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~--~~G~~vC~~CG~--------Vl~e~~id~~ 41 (182)
.+||.|+. .+++. +....||..|+. +| +.++|.+
T Consensus 31 ~kc~~~~~---~~y~~~l~~~~~v~p~~~~~~r~~arerI-~~L~D~g 74 (285)
T 2f9i_B 31 TKCPKCKK---IMYTKELAENLNVCFNCDHHIALTAYKRI-EAISDEG 74 (285)
T ss_dssp EECTTTCC---EEEHHHHHHTTTBCTTTCCBCCCCHHHHH-HHTSCTT
T ss_pred HhhHhhCC---ccchhhhHHhcCcCCCCCCCCCCCHHHHH-HHHccCC
Confidence 47999996 34553 566789999999 33 4567765
No 241
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=21.74 E-value=32 Score=26.92 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceeEeCCCCceEeCCCc
Q 030129 3 DAFCSDCKKHTEVVFDHSAGDTVCSECG 30 (182)
Q Consensus 3 ~~~Cp~Cg~~~~iv~D~~~G~~vC~~CG 30 (182)
...|-+||+...--....-|-.+|.+|-
T Consensus 17 n~~c~dc~~~~p~w~s~~~g~~~c~~c~ 44 (278)
T 1dcq_A 17 NDVCCDCGAPDPTWLSTNLGILTCIECS 44 (278)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCeEEcHHHH
Confidence 3579999984332334578999999993
No 242
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=21.70 E-value=29 Score=29.19 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl 33 (182)
..|-+||...+--....-|-.+|.+|.-|-
T Consensus 35 ~~C~dC~~~~p~w~s~~~g~~~C~~Csg~h 64 (386)
T 3lju_X 35 ARCADCGAPDPDWASYTLGVFICLSCSGIH 64 (386)
T ss_dssp SBCTTTCCBSCCEEETTTTEEECHHHHHHH
T ss_pred CcCccCCCCCCCeEEecccEEEhhhhchHh
Confidence 469999984333445588999999998653
No 243
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=21.59 E-value=57 Score=22.21 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCceEeCCCceeeeCCCcccc
Q 030129 20 SAGDTVCSECGLVLESHSIDET 41 (182)
Q Consensus 20 ~~G~~vC~~CG~Vl~e~~id~~ 41 (182)
..-.-||..||.=|.=..|++.
T Consensus 72 ~~~YRvCn~CGkPI~l~AIvDH 93 (96)
T 3mhs_E 72 PIQYRVCEKCGKPLALTAIVDH 93 (96)
T ss_dssp SCCCEEETTTCCEECGGGTTTC
T ss_pred cccchhhhccCCceeHHHHHHH
Confidence 4667899999998875555543
No 244
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.31 E-value=15 Score=22.88 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHhcCCCceeeecee
Q 030129 157 HALLRKSALSPMELQRRK 174 (182)
Q Consensus 157 ~eia~~~~v~~~~i~r~~ 174 (182)
.|||+.+|||..++.|+.
T Consensus 4 ~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVI 21 (65)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHH
Confidence 689999999998887753
No 245
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.24 E-value=28 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCCCCCCCCceeEeCCCCc-------eEeCCCceee
Q 030129 4 AFCSDCKKHTEVVFDHSAGD-------TVCSECGLVL 33 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~-------~vC~~CG~Vl 33 (182)
..|-.|+..--+++ .+|. -||++|+.+.
T Consensus 26 r~CarC~~~LG~l~--~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 26 RTCARCQESLGRLS--PKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp CBCSSSCCBCSSSC--TTTSEETTTTEECCTTSEEEC
T ss_pred cchhhhCccccccc--cCCCcCcccChhhcccccccC
Confidence 35666765222232 2443 5788898875
No 246
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.23 E-value=1.1e+02 Score=19.93 Aligned_cols=26 Identities=0% Similarity=-0.086 Sum_probs=21.4
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHhc
Q 030129 112 IATMSDRIGQMRYIRRWKIKSLVEAE 137 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~~i~k~a~~~ 137 (182)
|.+++..|+||..-.+..+-+++.++
T Consensus 33 l~~La~ll~ls~~~vE~~ls~mI~~~ 58 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQMITEG 58 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 68899999999877777777777766
No 247
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.74 E-value=1e+02 Score=17.65 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=12.4
Q ss_pred HHHHHHHhCChHHHHHH
Q 030129 112 IATMSDRIGQMRYIRRW 128 (182)
Q Consensus 112 I~~i~~~L~L~~~v~~~ 128 (182)
..+||..||++...+..
T Consensus 16 ~~eIA~~l~is~~tV~~ 32 (61)
T 2jpc_A 16 NHGISEKLHISIKTVET 32 (61)
T ss_dssp SHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 35788899998766555
No 248
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.73 E-value=32 Score=19.95 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=15.3
Q ss_pred eCCCCceEeCCCceeeeCCCcc
Q 030129 18 DHSAGDTVCSECGLVLESHSID 39 (182)
Q Consensus 18 D~~~G~~vC~~CG~Vl~e~~id 39 (182)
|.....-||..||.=+.=..|.
T Consensus 12 e~~~~YRvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 12 DKPIQYRVCEKCGKPLALTAIV 33 (44)
T ss_dssp CCCCCEEECTTTCCEEETTTHH
T ss_pred CccccchhhcccCCcchHHHHH
Confidence 3456678999999877644443
No 249
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=20.52 E-value=35 Score=28.33 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCcee
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLV 32 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~V 32 (182)
..|-+|+....--....-|-.+|.+|.-|
T Consensus 46 ~~c~dc~~~~p~w~s~~~g~~~c~~c~~~ 74 (368)
T 3jue_A 46 AQCCDCREPAPEWASINLGVTLCIQCSGI 74 (368)
T ss_dssp TBCTTTCCBSCCEEETTTTEEECHHHHHH
T ss_pred CcCCCCCCCCCCeEEecCCeEEcHhHHHH
Confidence 57999998433344558899999999633
No 250
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.35 E-value=80 Score=20.71 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=16.5
Q ss_pred CCCCCCCCCCceeEeCCCCceEeCCCceeeeCC
Q 030129 4 AFCSDCKKHTEVVFDHSAGDTVCSECGLVLESH 36 (182)
Q Consensus 4 ~~Cp~Cg~~~~iv~D~~~G~~vC~~CG~Vl~e~ 36 (182)
..|..|+.. +..-.-.--|..||.|+=..
T Consensus 10 ~~C~~C~~~----F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 10 SRCYGCAVK----FTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp SBCTTTCCB----CCSSSCEEECSSSCCEEETT
T ss_pred CCCcCcCCc----ccCccccccCCCCCCEEChh
Confidence 469999862 22234445666666665433
Done!