Citrus Sinensis ID: 030129

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKSALSPMELQRRKLAEQKNTL
ccccccccccccccEEECcccccEEcccccEEECcccccccccccccccccccccccccccccccccccccccEEECccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHccc
****FCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDET**W*********************LLADGGLSTVIAKP***********************RGLILAFKTIATMSDRIGQMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKSALSPMELQRRKLAE*****
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MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRIGQMRYIRRWKIKSLVEAEIKTHYWLLACTLLVDKKTSHALLRKSALSPMELQRRKLAEQKNTL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transcription initiation factor IIB-2 General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II.probableQ9SS44
Transcription initiation factor IIB General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II.probableP48513
Transcription initiation factor IIB General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II.probableQ8W0W3

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3K7A, chain M
Confidence level:very confident
Coverage over the Query: 3-47,61-179
View the alignment between query and template
View the model in PyMOL