Query 030130
Match_columns 182
No_of_seqs 204 out of 818
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158 HSP90 co-chaperone p23 100.0 1.7E-42 3.8E-47 277.5 10.8 137 1-140 4-146 (180)
2 cd00237 p23 p23 binds heat sho 100.0 2.7E-35 5.8E-40 221.3 12.8 105 4-111 1-106 (106)
3 cd06465 p23_hB-ind1_like p23_l 100.0 5.4E-30 1.2E-34 191.4 12.9 107 5-113 1-108 (108)
4 cd06489 p23_CS_hSgt1_like p23_ 99.9 3.3E-21 7.3E-26 137.7 9.3 82 8-91 1-84 (84)
5 cd06488 p23_melusin_like p23_l 99.8 1.7E-20 3.7E-25 135.6 10.8 85 5-91 1-87 (87)
6 PLN03088 SGT1, suppressor of 99.8 9.7E-21 2.1E-25 167.4 7.8 125 5-132 157-305 (356)
7 cd06468 p23_CacyBP p23_like do 99.8 1.8E-19 4E-24 130.2 10.8 84 6-91 3-92 (92)
8 cd06466 p23_CS_SGT1_like p23_l 99.8 5.3E-19 1.1E-23 125.0 8.9 82 8-91 1-84 (84)
9 cd06469 p23_DYX1C1_like p23_li 99.7 2.8E-17 6.2E-22 114.9 9.3 76 9-91 1-78 (78)
10 PF04969 CS: CS domain; Inter 99.7 1.1E-16 2.3E-21 110.7 11.6 75 5-81 1-79 (79)
11 cd06463 p23_like Proteins cont 99.7 8.3E-17 1.8E-21 111.9 10.0 81 9-91 1-84 (84)
12 cd06467 p23_NUDC_like p23_like 99.7 7.4E-17 1.6E-21 114.5 9.6 80 7-91 1-85 (85)
13 KOG1309 Suppressor of G2 allel 99.7 7.1E-18 1.5E-22 136.6 3.5 126 4-132 3-147 (196)
14 cd06493 p23_NUDCD1_like p23_NU 99.7 2.8E-16 6.1E-21 112.8 10.0 80 7-91 1-85 (85)
15 cd06492 p23_mNUDC_like p23-lik 99.6 4.4E-15 9.6E-20 107.7 9.4 80 7-91 1-87 (87)
16 cd06495 p23_NUDCD3_like p23-li 99.6 2.7E-14 5.9E-19 106.7 11.7 93 3-97 3-100 (102)
17 cd06490 p23_NCB5OR p23_like do 99.6 3.4E-14 7.3E-19 102.9 10.5 80 7-90 1-86 (87)
18 cd06494 p23_NUDCD2_like p23-li 99.6 3.6E-14 7.8E-19 104.4 10.0 83 3-91 4-93 (93)
19 KOG1667 Zn2+-binding protein M 99.3 4.1E-12 8.8E-17 108.2 7.5 90 3-93 213-304 (320)
20 KOG2265 Nuclear distribution p 99.3 8E-12 1.7E-16 101.0 6.5 97 3-105 17-119 (179)
21 cd00298 ACD_sHsps_p23-like Thi 99.1 7.3E-10 1.6E-14 74.7 8.6 72 9-81 1-80 (80)
22 COG5091 SGT1 Suppressor of G2 98.7 6.1E-09 1.3E-13 90.2 1.2 123 6-132 178-319 (368)
23 KOG3260 Calcyclin-binding prot 98.6 5.2E-08 1.1E-12 79.8 5.8 85 6-92 76-163 (224)
24 KOG4379 Uncharacterized conser 98.0 1.6E-05 3.5E-10 72.9 6.9 88 1-94 286-378 (596)
25 COG0071 IbpA Molecular chapero 97.9 0.00033 7.1E-09 54.9 11.3 81 3-84 39-135 (146)
26 cd06472 ACD_ScHsp26_like Alpha 97.7 0.00056 1.2E-08 49.3 9.7 76 6-81 1-92 (92)
27 cd06471 ACD_LpsHSP_like Group 97.3 0.0039 8.4E-08 44.8 9.8 75 5-81 1-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 97.3 0.0035 7.6E-08 43.4 9.2 72 9-81 2-88 (88)
29 PF00011 HSP20: Hsp20/alpha cr 97.0 0.017 3.7E-07 41.7 10.9 76 8-84 1-90 (102)
30 cd06526 metazoan_ACD Alpha-cry 96.2 0.05 1.1E-06 38.3 8.3 67 14-81 7-83 (83)
31 cd06497 ACD_alphaA-crystallin_ 96.1 0.089 1.9E-06 37.7 9.4 71 10-81 6-86 (86)
32 cd06470 ACD_IbpA-B_like Alpha- 96.1 0.16 3.5E-06 36.4 10.7 74 5-81 1-90 (90)
33 cd06475 ACD_HspB1_like Alpha c 96.0 0.12 2.6E-06 37.0 9.6 71 8-79 4-84 (86)
34 cd06479 ACD_HspB7_like Alpha c 95.9 0.094 2E-06 37.4 8.6 70 11-81 5-81 (81)
35 cd06498 ACD_alphaB-crystallin_ 95.8 0.13 2.7E-06 36.8 9.0 70 12-82 5-84 (84)
36 PRK10743 heat shock protein Ib 95.7 0.27 5.9E-06 38.4 11.2 75 5-82 35-124 (137)
37 cd06478 ACD_HspB4-5-6 Alpha-cr 95.4 0.21 4.6E-06 35.5 8.8 70 11-81 4-83 (83)
38 PRK11597 heat shock chaperone 95.2 0.55 1.2E-05 37.0 11.5 76 4-82 32-122 (142)
39 PF08190 PIH1: pre-RNA process 95.2 0.14 3.1E-06 44.2 9.0 64 12-80 259-327 (328)
40 cd06476 ACD_HspB2_like Alpha c 94.4 0.38 8.3E-06 34.3 8.0 68 13-81 6-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 93.7 0.64 1.4E-05 33.3 8.1 66 13-79 6-85 (87)
42 cd06482 ACD_HspB10 Alpha cryst 89.7 4.1 8.9E-05 29.4 8.5 64 13-77 7-83 (87)
43 cd06477 ACD_HspB3_Like Alpha c 89.4 6.1 0.00013 28.2 9.3 66 12-78 5-80 (83)
44 cd06480 ACD_HspB8_like Alpha-c 78.8 22 0.00049 25.8 8.7 67 12-79 13-89 (91)
45 PF05455 GvpH: GvpH; InterPro 76.1 37 0.0008 27.9 9.5 73 7-84 94-170 (177)
46 KOG3158 HSP90 co-chaperone p23 59.8 8.2 0.00018 31.7 2.5 13 128-140 147-160 (180)
47 KOG3247 Uncharacterized conser 48.9 12 0.00027 34.7 2.1 82 3-90 2-88 (466)
48 PF06543 Lac_bphage_repr: Lact 43.6 6.8 0.00015 25.6 -0.3 11 101-111 16-26 (49)
49 KOG0710 Molecular chaperone (s 42.0 85 0.0018 25.7 5.9 79 6-84 84-182 (196)
50 cd06464 ACD_sHsps-like Alpha-c 40.6 53 0.0012 21.9 3.9 36 48-84 6-41 (88)
51 PF04806 EspF: EspF protein re 39.7 11 0.00024 24.1 0.2 17 160-176 11-27 (47)
52 cd06526 metazoan_ACD Alpha-cry 39.6 50 0.0011 22.8 3.7 34 49-83 7-40 (83)
53 PF09087 Cyc-maltodext_N: Cycl 36.6 1.7E+02 0.0036 21.3 6.8 66 4-71 3-70 (88)
54 KOG4032 Uncharacterized conser 32.2 47 0.001 27.5 2.9 27 143-169 138-164 (184)
55 cd05734 Ig7_DSCAM Seventh immu 31.6 1.4E+02 0.003 19.7 4.8 52 4-55 12-63 (79)
56 cd06471 ACD_LpsHSP_like Group 28.4 1.1E+02 0.0024 21.3 4.0 35 48-83 9-43 (93)
57 PTZ00429 beta-adaptin; Provisi 27.2 59 0.0013 32.3 3.1 6 86-91 540-545 (746)
58 cd05726 Ig4_Robo Fhird immunog 27.0 2.1E+02 0.0045 19.4 5.6 52 4-55 15-66 (90)
59 PF08549 SWI-SNF_Ssr4: Fungal 25.6 45 0.00097 32.7 1.9 36 122-160 611-651 (669)
60 KOG4053 Ataxin-1, involved in 25.5 2.3E+02 0.005 23.9 5.8 73 5-81 78-151 (224)
61 cd05845 Ig2_L1-CAM_like Second 24.0 2.4E+02 0.0052 20.4 5.2 46 4-56 33-79 (95)
62 KOG3591 Alpha crystallins [Pos 23.2 4E+02 0.0088 21.5 7.7 67 16-83 74-150 (173)
63 PF15406 PH_6: Pleckstrin homo 22.8 76 0.0017 24.2 2.3 14 3-16 37-51 (112)
64 TIGR03066 Gem_osc_para_1 Gemma 22.6 2E+02 0.0044 21.8 4.6 44 26-82 34-77 (111)
65 COG4856 Uncharacterized protei 20.3 4.1E+02 0.0089 24.6 6.9 30 55-84 108-137 (403)
66 PF03370 CBM_21: Putative phos 20.2 3.4E+02 0.0074 19.9 5.4 69 13-88 18-103 (113)
No 1
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=277.50 Aligned_cols=137 Identities=43% Similarity=0.771 Sum_probs=121.1
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130 1 MSRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (182)
Q Consensus 1 Ms~~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk 80 (182)
|.++|.|.||||.+.|||||+|.++++++|+|++. +|+|+|+++.+++.|+++|+||++|+|++|++++++|.|.++|+
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~ 82 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR 82 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence 34789999999999999999999999999999984 89999999888899999999999999999999999999999999
Q ss_pred eCCC-ccccccccccCCCCCcceecCCccccccccCCCC---CCCCCCCCCCcccC--CCCCCCCC
Q 030130 81 KAEN-KWWSRLLKQAGKPPVFLKVDWDKWIDEDEEGKDD---KPDMDFGDLDFSKM--NMGGLDAE 140 (182)
Q Consensus 81 Kk~~-~~WprL~k~~~K~~~~lkvDwdkw~DEddeee~~---~~~~~~~~~df~~m--~mgg~~~~ 140 (182)
|++. .+|||||+++.|+| |||+||+||+||+|++++. +++ ..++|+|++| ||||++++
T Consensus 83 K~e~~~~WprLtkeK~K~h-wLkvDFdkW~Dededde~~~~~~~g-~a~g~~~~~~mggmgg~~~~ 146 (180)
T KOG3158|consen 83 KKELGEYWPRLTKEKAKLH-WLKVDFDKWVDEDEDDEAEDADGMG-GAGGMDFSQMMGGMGGAEGV 146 (180)
T ss_pred ccccccccchhhhcccccc-eEEcchhhccccccccchhhccccc-cccccchhhccccCCccccc
Confidence 9887 59999999999997 9999999999999877654 222 3566677776 47776665
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=2.7e-35 Score=221.31 Aligned_cols=105 Identities=37% Similarity=0.638 Sum_probs=98.3
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (182)
Q Consensus 4 ~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~ 83 (182)
+|.+.||||.+.|||||.++++++++|+|++ ++|+|++.++ ++..|+++|+||++|+|++|++++++|+|+|+|+|++
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~-~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEK-SKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK 78 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEec-CEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence 5899999999999999999999999999998 4999999775 5677999999999999999999999999999999997
Q ss_pred Cc-cccccccccCCCCCcceecCCccccc
Q 030130 84 NK-WWSRLLKQAGKPPVFLKVDWDKWIDE 111 (182)
Q Consensus 84 ~~-~WprL~k~~~K~~~~lkvDwdkw~DE 111 (182)
.+ +||||++++.|++ ||++||+||+||
T Consensus 79 ~~~~WprL~k~~~k~~-~lk~DfdkW~D~ 106 (106)
T cd00237 79 EGVAWPRLTKEKAKPN-WLSVDFDNWRDW 106 (106)
T ss_pred CCCCCchhhcCCCCCC-cEECcchhccCC
Confidence 65 9999999999986 999999999986
No 3
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.97 E-value=5.4e-30 Score=191.44 Aligned_cols=107 Identities=51% Similarity=0.939 Sum_probs=100.2
Q ss_pred CCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC-
Q 030130 5 PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE- 83 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~- 83 (182)
|.|.||||.+.|+|+|+++++++++|.|++ ++|+|++.+..+++.|.++++||++|+|++|+|++.+++|+|+|+|++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~-~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEP-TSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEEC-CEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 789999999999999999999999999997 499999876445677999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCcceecCCccccccc
Q 030130 84 NKWWSRLLKQAGKPPVFLKVDWDKWIDEDE 113 (182)
Q Consensus 84 ~~~WprL~k~~~K~~~~lkvDwdkw~DEdd 113 (182)
+++|+||++++.|++ |+++||+||+||||
T Consensus 80 ~~~W~~L~~~~~k~~-~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKGKLP-WLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCCCCC-ceECCchhcccCCC
Confidence 789999999999997 99999999999986
No 4
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.85 E-value=3.3e-21 Score=137.65 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=75.6
Q ss_pred EEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCc
Q 030130 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (182)
Q Consensus 8 ~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~ 85 (182)
+||||.+.|+|+|+++++ ++++|+|++ ++|+|++.+. +++.|.++++||++|+|++|++++++++|+|+|+|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP-SGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC-CCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence 599999999999999998 789999997 5999998863 456799999999999999999999999999999999888
Q ss_pred cccccc
Q 030130 86 WWSRLL 91 (182)
Q Consensus 86 ~WprL~ 91 (182)
+|+||+
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999995
No 5
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.84 E-value=1.7e-20 Score=135.56 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=76.0
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130 5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA 82 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk 82 (182)
+|++||||.+.|+|+|+++++ ++++|.+++ ++|+|++..+ ++..|.+.|+||++|+|+.|++++.+++|+|+|+|+
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~-~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFE-GNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECC-CCceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence 589999999999999999765 578999987 4888887653 456799999999999999999999999999999999
Q ss_pred CCccccccc
Q 030130 83 ENKWWSRLL 91 (182)
Q Consensus 83 ~~~~WprL~ 91 (182)
++++|++|+
T Consensus 79 ~~~~W~~Le 87 (87)
T cd06488 79 EPGSWAKLE 87 (87)
T ss_pred CCCcCccCC
Confidence 988999995
No 6
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.83 E-value=9.7e-21 Score=167.44 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=98.1
Q ss_pred CCeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130 5 PTVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA 82 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk 82 (182)
+|+.|||+.+.|+|+|+++++ .+++|+|+.+ +|+|+... .++..|.|.+.||++|+|+.|++++.+++|+|+|+|+
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEV-PGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEec-CCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 689999999999999999987 4899999874 89998765 3557899999999999999999999999999999999
Q ss_pred CCccccccccccCC--CC------------C-----cceecCCccccccccCC---CCCCCCCCCCCCcccC
Q 030130 83 ENKWWSRLLKQAGK--PP------------V-----FLKVDWDKWIDEDEEGK---DDKPDMDFGDLDFSKM 132 (182)
Q Consensus 83 ~~~~WprL~k~~~K--~~------------~-----~lkvDwdkw~DEddeee---~~~~~~~~~~~df~~m 132 (182)
++..|++|++.... ++ . --++|||||..+.++|+ ...++..+++| |.+|
T Consensus 235 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~-f~~i 305 (356)
T PLN03088 235 EPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKF-FREI 305 (356)
T ss_pred CCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHH-HHHH
Confidence 98899999976432 11 0 12579999976643322 11112246667 8877
No 7
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.81 E-value=1.8e-19 Score=130.24 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=76.0
Q ss_pred CeEEEecCCeEEEEEEcCCC-----CceeEEEecCcEEEEEEeeCCCCCceEEEEe-ccCCcccCCceEEecCCeEEEEE
Q 030130 6 TVKWAQRTDRVYITIDLPDA-----QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLV 79 (182)
Q Consensus 6 ~v~WaQr~d~V~LtI~l~d~-----kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~le-Lf~~IdpeeSk~~v~~rkIei~L 79 (182)
+|.|+||.+.|+|+|+++++ ++++|+|++ ++|.|++.+ .++..|.+.+. ||++|+|++|+|++.+++|+|+|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~-~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHD-LNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEEC-CCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 68999999999999999875 678999987 499999865 35678999997 99999999999999999999999
Q ss_pred EeCCCccccccc
Q 030130 80 KKAENKWWSRLL 91 (182)
Q Consensus 80 kKk~~~~WprL~ 91 (182)
+|+++++|++|+
T Consensus 81 ~K~~~~~W~~L~ 92 (92)
T cd06468 81 AKKKEKKWESLT 92 (92)
T ss_pred EeCCCCccCccC
Confidence 999989999995
No 8
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.79 E-value=5.3e-19 Score=125.02 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=74.9
Q ss_pred EEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCc
Q 030130 8 KWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENK 85 (182)
Q Consensus 8 ~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~ 85 (182)
.|+|+.+.|+|+|+++++ +++.|.+++ ++|.|++.++ +++.|.++++||++|+|++|++++.+++|+|+|+|+.++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-GGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-CCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence 599999999999999998 689999987 5999998763 356899999999999999999999999999999999989
Q ss_pred cccccc
Q 030130 86 WWSRLL 91 (182)
Q Consensus 86 ~WprL~ 91 (182)
+||||+
T Consensus 79 ~W~~L~ 84 (84)
T cd06466 79 SWPSLE 84 (84)
T ss_pred CCccCC
Confidence 999985
No 9
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.73 E-value=2.8e-17 Score=114.92 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=67.2
Q ss_pred EEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCCcc
Q 030130 9 WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAENKW 86 (182)
Q Consensus 9 WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~~~ 86 (182)
|+||.+.|+|+|.+|+++ ++.|+++. +.|.|++ ..|.+.++||++|+|++|++++.+++|+|+|.|+++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~ 73 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI 73 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence 999999999999999985 66777765 3666653 46999999999999999999999999999999998889
Q ss_pred ccccc
Q 030130 87 WSRLL 91 (182)
Q Consensus 87 WprL~ 91 (182)
|+||.
T Consensus 74 W~~L~ 78 (78)
T cd06469 74 WEALC 78 (78)
T ss_pred ccccC
Confidence 99995
No 10
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.72 E-value=1.1e-16 Score=110.71 Aligned_cols=75 Identities=31% Similarity=0.455 Sum_probs=66.4
Q ss_pred CCeEEEecCCeEEEEEEcCCC----CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130 5 PTVKWAQRTDRVYITIDLPDA----QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~----kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk 80 (182)
|+|.|+|+.+.|+|+|.+++. ++++|+|++ ++|.|++..+ ++..|.++++||++|+|++|+|++.+++|+|+|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSG-DGKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEET-TSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEcc-CCceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 899999999999999999654 689999998 5999998864 3389999999999999999999999999999999
Q ss_pred e
Q 030130 81 K 81 (182)
Q Consensus 81 K 81 (182)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 11
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.71 E-value=8.3e-17 Score=111.86 Aligned_cols=81 Identities=38% Similarity=0.621 Sum_probs=74.2
Q ss_pred EEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCC-c
Q 030130 9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN-K 85 (182)
Q Consensus 9 WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~-~ 85 (182)
|+|+.+.|+|+|.+|++ +++.|.|+. ++|+|++.+. ++..|.++++||++|+|++|+|++.+++|+|+|+|+.+ .
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~-~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG-GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC-CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence 99999999999999997 799999987 5999998752 35789999999999999999999999999999999998 6
Q ss_pred cccccc
Q 030130 86 WWSRLL 91 (182)
Q Consensus 86 ~WprL~ 91 (182)
+|++|+
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999985
No 12
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.71 E-value=7.4e-17 Score=114.54 Aligned_cols=80 Identities=30% Similarity=0.557 Sum_probs=71.8
Q ss_pred eEEEecCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEEEEEeC
Q 030130 7 VKWAQRTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKA 82 (182)
Q Consensus 7 v~WaQr~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~LkKk 82 (182)
|.|+||.+.|+|+|.+++. ++++|+|++ ++|+|+..+ ..+.+.+.||++|+|++|+|++.+ ++|+|+|+|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~----~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG----GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC----CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 6899999999999999864 799999998 599998753 357889999999999999999999 9999999999
Q ss_pred CC-ccccccc
Q 030130 83 EN-KWWSRLL 91 (182)
Q Consensus 83 ~~-~~WprL~ 91 (182)
++ .+|++|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06467 76 NEGEWWPSLV 85 (85)
T ss_pred CCCccccccC
Confidence 98 5999985
No 13
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.70 E-value=7.1e-18 Score=136.64 Aligned_cols=126 Identities=25% Similarity=0.372 Sum_probs=99.9
Q ss_pred CCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEe
Q 030130 4 HPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK 81 (182)
Q Consensus 4 ~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkK 81 (182)
.++|+|||+...|.|||+.+++. ++.|.|.. +.|++..... ++..|.|.+.||++|.|+.|++++.+.+|+|+|.|
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~-~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K 80 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLP-SGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAK 80 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecC-CchhhhhhHHhcccccccceeeEeeeeeEEEEecc
Confidence 57999999999999999999984 78888875 5888887763 67789999999999999999999999999999999
Q ss_pred CCCccccccccccCCC--------------C-CcceecCCccccccccCCCC--CCCCCCCCCCcccC
Q 030130 82 AENKWWSRLLKQAGKP--------------P-VFLKVDWDKWIDEDEEGKDD--KPDMDFGDLDFSKM 132 (182)
Q Consensus 82 k~~~~WprL~k~~~K~--------------~-~~lkvDwdkw~DEddeee~~--~~~~~~~~~df~~m 132 (182)
.+...|..|+++++.. | .-.+.||++...|++.+|+. ..+.-++.| |++|
T Consensus 81 ~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~l-F~ki 147 (196)
T KOG1309|consen 81 AEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKL-FQKI 147 (196)
T ss_pred ccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHH-HHHH
Confidence 8888999999654311 0 11378999999877644432 222234555 7776
No 14
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.68 E-value=2.8e-16 Score=112.79 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=68.2
Q ss_pred eEEEecCCeEEEEEEcCC-C--CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec-CCeEEEEEEeC
Q 030130 7 VKWAQRTDRVYITIDLPD-A--QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKKA 82 (182)
Q Consensus 7 v~WaQr~d~V~LtI~l~d-~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkKk 82 (182)
|.|+||.+.|+|+|.+|. + ++++|+|+++ +|.|...+ ....++++||+.|+|++|+|++. +++|+|+|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~~----~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALKD----QAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeCC----CCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 689999999999999974 3 7999999984 99997642 23458889999999999999985 56899999999
Q ss_pred CCc-cccccc
Q 030130 83 ENK-WWSRLL 91 (182)
Q Consensus 83 ~~~-~WprL~ 91 (182)
+++ +||+|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06493 76 DEGPTWPELV 85 (85)
T ss_pred CCCccccccC
Confidence 876 999984
No 15
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.61 E-value=4.4e-15 Score=107.73 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=69.8
Q ss_pred eEEEecCCeEEEEEEcCC-----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEEEEE
Q 030130 7 VKWAQRTDRVYITIDLPD-----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVK 80 (182)
Q Consensus 7 v~WaQr~d~V~LtI~l~d-----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~Lk 80 (182)
|.|.||.+.|+|+|.+|. +++++|+|+++ +|++..++ +.+.++.+||++|++++|+|++.+ +.|.|+|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~g----~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLKG----QPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEECC----CceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 689999999999999953 47999999985 99998753 467899999999999999999976 67999999
Q ss_pred eCCC-ccccccc
Q 030130 81 KAEN-KWWSRLL 91 (182)
Q Consensus 81 Kk~~-~~WprL~ 91 (182)
|... .|||+|+
T Consensus 76 K~~~~~wW~~l~ 87 (87)
T cd06492 76 KINKMEWWSRLV 87 (87)
T ss_pred ECCCCccccccC
Confidence 9976 4999985
No 16
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.58 E-value=2.7e-14 Score=106.73 Aligned_cols=93 Identities=17% Similarity=0.330 Sum_probs=78.2
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEEE
Q 030130 3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIHY 77 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei 77 (182)
.++.|.|.|+.+.|.|+|.+|. +++++|+|++ ++|.+..+++. +..-.++.+||+.|++++|.|++.+ +.|.|
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~-~~~~~i~G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG-GEKVLMEGEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC-CCceEEeCcccCcccCccceEEEeCCCEEEE
Confidence 3578999999999999999995 3689999998 49999987422 2234589999999999999999987 55899
Q ss_pred EEEeCCCccccccccccCCC
Q 030130 78 LVKKAENKWWSRLLKQAGKP 97 (182)
Q Consensus 78 ~LkKk~~~~WprL~k~~~K~ 97 (182)
+|.|....||++|.++..++
T Consensus 81 ~L~K~~~~wW~~v~~g~~~i 100 (102)
T cd06495 81 SLSKCSEVWWNAVLKGEEEI 100 (102)
T ss_pred EEEECCCcccchhhCCCCcC
Confidence 99999877999999887543
No 17
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.57 E-value=3.4e-14 Score=102.89 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=65.6
Q ss_pred eEEEecCCeEEEEEEcCC--CCc--eeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec--CCeEEEEEE
Q 030130 7 VKWAQRTDRVYITIDLPD--AQD--VKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG--LRNIHYLVK 80 (182)
Q Consensus 7 v~WaQr~d~V~LtI~l~d--~kd--vkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~--~rkIei~Lk 80 (182)
++|||+.+.|+|+|+.+. ..+ +.+.++. ++|+++...+ +..|.++++||++|+|+. ++++. ++||||+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~--~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG--DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC--CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 589999999999999874 344 4455555 4888887653 567999999999998765 88877 569999999
Q ss_pred eCCCcccccc
Q 030130 81 KAENKWWSRL 90 (182)
Q Consensus 81 Kk~~~~WprL 90 (182)
|+++..|++|
T Consensus 77 K~e~~~W~~L 86 (87)
T cd06490 77 KKEPEKWTSL 86 (87)
T ss_pred cCCCCccccC
Confidence 9999999998
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.56 E-value=3.6e-14 Score=104.37 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=71.7
Q ss_pred CCCCeEEEecCCeEEEEEEcCC---CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCe-EEEE
Q 030130 3 RHPTVKWAQRTDRVYITIDLPD---AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRN-IHYL 78 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d---~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rk-Iei~ 78 (182)
.++.|.|+|+.+.|.|+|.+|. .++++|.|+++ +|.+..++ .. .++.+||+.|+|++|.|++.+.+ |+|.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~g----~~-~l~G~L~~~I~~destWtled~k~l~I~ 77 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVKG----QE-VLKGKLFDSVVADECTWTLEDRKLIRIV 77 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEECC----EE-EEcCcccCccCcccCEEEEECCcEEEEE
Confidence 4689999999999999999885 36999999984 99998753 33 68889999999999999999988 6999
Q ss_pred EEeCCCc---cccccc
Q 030130 79 VKKAENK---WWSRLL 91 (182)
Q Consensus 79 LkKk~~~---~WprL~ 91 (182)
|.|.+.. +|++|+
T Consensus 78 L~K~~~~~~~~W~sl~ 93 (93)
T cd06494 78 LTKSNRDAGNCWKSLL 93 (93)
T ss_pred EEeCCCCCCccccccC
Confidence 9998644 999984
No 19
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.32 E-value=4.1e-12 Score=108.22 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=78.2
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130 3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk 80 (182)
...|++|.|+...|+|+|+.+..- .-.|+.+. ..|+++...+.++..|.++++|++.|++++|.+.+..++|+|+|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 357999999999999999998753 44566665 378888776667789999999999999999999999999999999
Q ss_pred eCCCccccccccc
Q 030130 81 KAENKWWSRLLKQ 93 (182)
Q Consensus 81 Kk~~~~WprL~k~ 93 (182)
|++++.|+||.-.
T Consensus 292 k~ep~sWa~Le~p 304 (320)
T KOG1667|consen 292 KAEPGSWARLEFP 304 (320)
T ss_pred ccCCCCcccccCC
Confidence 9999999999865
No 20
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.27 E-value=8e-12 Score=101.01 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=77.9
Q ss_pred CCCCeEEEecCCeEEEEEEcCC----CCceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEE
Q 030130 3 RHPTVKWAQRTDRVYITIDLPD----AQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYL 78 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d----~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~ 78 (182)
..+.|.|+|+-..|.|.|.+|. +++++|.|.. .+|.+..++ ....++.+||++|++++|.|+|.++++.++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg----~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKG----QPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCC----CCceecCccccccccccceEEecCCEEEEE
Confidence 3578999999999999999884 3689999987 488888764 446799999999999999999998776555
Q ss_pred EEeCCC--ccccccccccCCCCCcceecC
Q 030130 79 VKKAEN--KWWSRLLKQAGKPPVFLKVDW 105 (182)
Q Consensus 79 LkKk~~--~~WprL~k~~~K~~~~lkvDw 105 (182)
+.|+.. .||.||+++...+. --+++-
T Consensus 92 ~l~K~~~~eWW~~ll~gep~ID-~~ki~~ 119 (179)
T KOG2265|consen 92 LLKKSNKMEWWDSLLEGEPEID-TKKIEP 119 (179)
T ss_pred EeeccchHHHHHHHHcCCCCCC-ccccCh
Confidence 544443 59999999886664 456666
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.10 E-value=7.3e-10 Score=74.68 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=64.5
Q ss_pred EEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCC------CCCceEEEEeccCCcccCCceEEecCCeEEEEEE
Q 030130 9 WAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGP------DKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVK 80 (182)
Q Consensus 9 WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~------~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~Lk 80 (182)
|+|+.+.|+|+|.+|+. +++.|.++. +.|.|++.... ....|.+.+.|++.|+++++++++....|+|+|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 89999999999999997 689999987 59999987632 2468999999999999999999999999999998
Q ss_pred e
Q 030130 81 K 81 (182)
Q Consensus 81 K 81 (182)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.67 E-value=6.1e-09 Score=90.17 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=92.4
Q ss_pred CeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130 6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (182)
Q Consensus 6 ~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~ 83 (182)
+|.|+|++..+.|-|+.+.+. +|.+-++. +.|+++.+....+..+.+.+.||++|.|+.+.+++.+.++++.|+|.+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecC-CcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhh
Confidence 577888888888888878776 45666776 589999887555667888899999999999999999988999999999
Q ss_pred CccccccccccC----------CCC-------CcceecCCccccccccCCCCCCCCCCCCCCcccC
Q 030130 84 NKWWSRLLKQAG----------KPP-------VFLKVDWDKWIDEDEEGKDDKPDMDFGDLDFSKM 132 (182)
Q Consensus 84 ~~~WprL~k~~~----------K~~-------~~lkvDwdkw~DEddeee~~~~~~~~~~~df~~m 132 (182)
...|..|.+... +.+ ..-+.||++...+++-+|+.+- .|.+| |++|
T Consensus 257 ~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps--~~dsl-Fqkl 319 (368)
T COG5091 257 MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPS--VMDSL-FQKL 319 (368)
T ss_pred hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCch--HHHHH-HHHH
Confidence 889999986321 111 1368899999987775554222 12334 7777
No 23
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=98.64 E-value=5.2e-08 Score=79.77 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=75.0
Q ss_pred CeEEEecCCeEEEEEEcCCC--CceeEEEecCcEEEEEEeeCCCCCceEEEEe-ccCCcccCCceEEecCCeEEEEEEeC
Q 030130 6 TVKWAQRTDRVYITIDLPDA--QDVKLKLEPEGKFFFSATSGPDKIPYEVDID-LYDKVDVNESKASVGLRNIHYLVKKA 82 (182)
Q Consensus 6 ~v~WaQr~d~V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~le-Lf~~IdpeeSk~~v~~rkIei~LkKk 82 (182)
.|-|-|+..+|-|-|.|.++ .+|+|.|++. +|.+.... -+++.|.+.+. |+++|.|+.|+.++....|.|.++|-
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~d-lqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHD-LQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeee-cCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 37899999999998888887 5899999984 98888775 47789999996 99999999999999999999999888
Q ss_pred CCcccccccc
Q 030130 83 ENKWWSRLLK 92 (182)
Q Consensus 83 ~~~~WprL~k 92 (182)
+..+|.-|+.
T Consensus 154 e~~rwd~Lt~ 163 (224)
T KOG3260|consen 154 ENTRWDYLTQ 163 (224)
T ss_pred hcccchHHHH
Confidence 8889999974
No 24
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.99 E-value=1.6e-05 Score=72.95 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=70.4
Q ss_pred CCCCCCeEEEecCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecC-CeEE
Q 030130 1 MSRHPTVKWAQRTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGL-RNIH 76 (182)
Q Consensus 1 Ms~~P~v~WaQr~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~-rkIe 76 (182)
|-.+|.|.|.|+.+.+.+++.+|.. +++.|.+-. ++|.+... -.-.|+..||+.|.-+.|.+.+.. .+++
T Consensus 286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~-~~v~v~~~-----dh~~~~g~lyasv~he~s~~ii~ean~Le 359 (596)
T KOG4379|consen 286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSK-TTVVVKHL-----DHVIFDGELYASVGHELSAFIIAEANGLE 359 (596)
T ss_pred ccCCccceeeeccCcceEEEecccccccceEEEEecC-ceEEEEee-----eeEEeccchhhhccccchhhhhhhhccce
Confidence 4578999999999999999999863 466777765 36655532 245688899999999999999864 8999
Q ss_pred EEEEeCCCc-ccccccccc
Q 030130 77 YLVKKAENK-WWSRLLKQA 94 (182)
Q Consensus 77 i~LkKk~~~-~WprL~k~~ 94 (182)
+.|.|++.. .||||..++
T Consensus 360 ~sl~K~de~~twprL~~~d 378 (596)
T KOG4379|consen 360 LSLTKADEIQTWPRLFAQD 378 (596)
T ss_pred EEEeecccccccchheeec
Confidence 999999654 899998654
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00033 Score=54.85 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC--------------CCceEEEEeccCCcccCCc
Q 030130 3 RHPTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD--------------KIPYEVDIDLYDKVDVNES 66 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~--------------~~~Y~l~leLf~~IdpeeS 66 (182)
..|.|..+++.+.+.|++.||+++ +++|.++. +.|++++..... ...|+-.+.|...|+++..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 469999999999999999999984 78999986 589999886321 2568889999999999987
Q ss_pred eEEecCCeEEEEEEeCCC
Q 030130 67 KASVGLRNIHYLVKKAEN 84 (182)
Q Consensus 67 k~~v~~rkIei~LkKk~~ 84 (182)
+.++...-+.|+|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 888888889999999765
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.70 E-value=0.00056 Score=49.30 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=60.9
Q ss_pred CeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--------------CCCceEEEEeccCCcccCCceEE
Q 030130 6 TVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--------------DKIPYEVDIDLYDKVDVNESKAS 69 (182)
Q Consensus 6 ~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--------------~~~~Y~l~leLf~~IdpeeSk~~ 69 (182)
++.|+++.+.+.|.+.||+++ +++|.+..++.|++++.... ....|.-.+.|-..|+++..+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 578999999999999999985 78888864237899886411 02367778899999999988888
Q ss_pred ecCCeEEEEEEe
Q 030130 70 VGLRNIHYLVKK 81 (182)
Q Consensus 70 v~~rkIei~LkK 81 (182)
+...-+.|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 888888998876
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.31 E-value=0.0039 Score=44.77 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCeEEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC----------------CCceEEEEeccCCcccCCc
Q 030130 5 PTVKWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD----------------KIPYEVDIDLYDKVDVNES 66 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~----------------~~~Y~l~leLf~~IdpeeS 66 (182)
|++.++++.+.+.|.+.||+++ +++|.+.. +.|.+++..... ...|.-.+.|- .|+++..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 5789999999999999999984 78888876 589998765210 01345556664 7888888
Q ss_pred eEEecCCeEEEEEEe
Q 030130 67 KASVGLRNIHYLVKK 81 (182)
Q Consensus 67 k~~v~~rkIei~LkK 81 (182)
+.++...-+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 888888888888876
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.29 E-value=0.0035 Score=43.41 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=60.1
Q ss_pred EEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------------CCceEEEEeccCCcccCCceEEecCC
Q 030130 9 WAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------------KIPYEVDIDLYDKVDVNESKASVGLR 73 (182)
Q Consensus 9 WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------------~~~Y~l~leLf~~IdpeeSk~~v~~r 73 (182)
++++.+.+.|.|.+|++. +++|.+.. +.|.+++..... ...|...+.|-..|+++..+.++...
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 678899999999999984 78888876 589998775211 35789999999999999999998888
Q ss_pred eEEEEEEe
Q 030130 74 NIHYLVKK 81 (182)
Q Consensus 74 kIei~LkK 81 (182)
-+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 88888875
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.02 E-value=0.017 Score=41.71 Aligned_cols=76 Identities=28% Similarity=0.374 Sum_probs=58.5
Q ss_pred EEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeC---CC---------CCceEEEEeccCCcccCCceEEecCC
Q 030130 8 KWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSG---PD---------KIPYEVDIDLYDKVDVNESKASVGLR 73 (182)
Q Consensus 8 ~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~---~~---------~~~Y~l~leLf~~IdpeeSk~~v~~r 73 (182)
+|.++.+.+.|.+.+|+.. +++|.+.. +.|.+++... .+ ...|.-.+.|-..|+++..+.++...
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 5889999999999999974 88999986 5899988753 11 13577788999999999999999888
Q ss_pred eEEEEEEeCCC
Q 030130 74 NIHYLVKKAEN 84 (182)
Q Consensus 74 kIei~LkKk~~ 84 (182)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 89999999764
No 30
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.18 E-value=0.05 Score=38.32 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=54.2
Q ss_pred CeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------CCceEEEEeccCCcccCCceEEecC-CeEEEEEEe
Q 030130 14 DRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------KIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKK 81 (182)
Q Consensus 14 d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~LkK 81 (182)
+.+.|++.+|+.+ +++|.+.. +.|.+++..... ...|.-.+.|-..|+++..+.++.. .-+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 4789999999975 78999986 699999875221 1368888999999999998888887 778888865
No 31
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.11 E-value=0.089 Score=37.74 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=55.9
Q ss_pred EecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEe-cCCeEEEEE
Q 030130 10 AQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASV-GLRNIHYLV 79 (182)
Q Consensus 10 aQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~L 79 (182)
+.+.+.+.|++.+|+++ +++|++.. +.|++++.... .. .+|.-.+.|-..|+++..+.++ ...-+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 45778899999999985 78999986 69999987521 11 2366678899999999999998 577788888
Q ss_pred Ee
Q 030130 80 KK 81 (182)
Q Consensus 80 kK 81 (182)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 32
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.10 E-value=0.16 Score=36.42 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCeEEEecC-CeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------------CCceEEEEeccCCcccCCceE
Q 030130 5 PTVKWAQRT-DRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------------KIPYEVDIDLYDKVDVNESKA 68 (182)
Q Consensus 5 P~v~WaQr~-d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------------~~~Y~l~leLf~~IdpeeSk~ 68 (182)
|.+.=+++. +.+.|++.||+++ +++|.+.. +.|.+++..... ...|.-.+.|-..|+.. +.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 556667775 8999999999985 78888875 589999764211 13577788898888885 55
Q ss_pred EecCCeEEEEEEe
Q 030130 69 SVGLRNIHYLVKK 81 (182)
Q Consensus 69 ~v~~rkIei~LkK 81 (182)
+....-+.|+|.+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 6667777777753
No 33
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.01 E-value=0.12 Score=37.04 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred EEEecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC---C----CceEEEEeccCCcccCCceEEec-CCeEEE
Q 030130 8 KWAQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD---K----IPYEVDIDLYDKVDVNESKASVG-LRNIHY 77 (182)
Q Consensus 8 ~WaQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~---~----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei 77 (182)
.++.+.+.+.|++.+|+++ +++|++.. +.|.+++..... . ..|.-.+.|-..|++++.+-++. ..-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 5788999999999999985 78899976 599999876311 1 24777888999999999888886 666666
Q ss_pred EE
Q 030130 78 LV 79 (182)
Q Consensus 78 ~L 79 (182)
.|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 65
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=95.90 E-value=0.094 Score=37.43 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=55.5
Q ss_pred ecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC-CC---CceEEEEeccCCcccCCceEEe-cCCeEEEEEEe
Q 030130 11 QRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP-DK---IPYEVDIDLYDKVDVNESKASV-GLRNIHYLVKK 81 (182)
Q Consensus 11 Qr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~-~~---~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~LkK 81 (182)
.+.+.+.|++.+|+.+ +++|++.. +.|++++.-.. .+ ..|.-.+.|-..|+++..+.++ ....+.|+|++
T Consensus 5 e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 5 TLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4677899999999975 78999986 69999986411 11 3677788999999999999987 67778888864
No 35
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=95.83 E-value=0.13 Score=36.84 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=55.4
Q ss_pred cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEec-CCeEEEEEEe
Q 030130 12 RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK 81 (182)
Q Consensus 12 r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkK 81 (182)
+.+.+.|++.+|+.+ +++|++.. +.|++++.... .. ..|.-.+.|-..|+++..+.++. ..-+.|+|.|
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 467889999999985 78999986 59999986421 01 23667788999999999999996 7888999987
Q ss_pred C
Q 030130 82 A 82 (182)
Q Consensus 82 k 82 (182)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 5
No 36
>PRK10743 heat shock protein IbpA; Provisional
Probab=95.68 E-value=0.27 Score=38.41 Aligned_cols=75 Identities=9% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCeEEEe-cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC----------CceEEEEeccCCcccCCceEE
Q 030130 5 PTVKWAQ-RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK----------IPYEVDIDLYDKVDVNESKAS 69 (182)
Q Consensus 5 P~v~WaQ-r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~----------~~Y~l~leLf~~IdpeeSk~~ 69 (182)
|.+.-++ +.+.+.|++.||+++ +++|.++. +.|++++.... .. ..|.-.+.|-..|++++ -+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7889985 899999999999984 78999975 69999986421 11 24666788999999984 55
Q ss_pred ecCCeEEEEEEeC
Q 030130 70 VGLRNIHYLVKKA 82 (182)
Q Consensus 70 v~~rkIei~LkKk 82 (182)
....-+.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 6667789999986
No 37
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.36 E-value=0.21 Score=35.46 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=53.8
Q ss_pred ecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC-----CceEEEEeccCCcccCCceEEec-CCeEEEEEE
Q 030130 11 QRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK-----IPYEVDIDLYDKVDVNESKASVG-LRNIHYLVK 80 (182)
Q Consensus 11 Qr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~-----~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~Lk 80 (182)
.+.+.+.|++.+|+.+ +++|++.. +.|++++.... .. ..|.-.+.|-..|+++..+.++. ..-+.|+|.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 4567899999999975 78999986 59999986521 11 23666788999999999888884 677888886
Q ss_pred e
Q 030130 81 K 81 (182)
Q Consensus 81 K 81 (182)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 38
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.20 E-value=0.55 Score=37.02 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCeEEEec-CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--CC----------CceEEEEeccCCcccCCceE
Q 030130 4 HPTVKWAQR-TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--DK----------IPYEVDIDLYDKVDVNESKA 68 (182)
Q Consensus 4 ~P~v~WaQr-~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~~----------~~Y~l~leLf~~IdpeeSk~ 68 (182)
.|.+.=+++ .+.+.|++.||+++ ++.|.++. +.|++++.... .+ ..|.-.+.|-..|+++ +-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 477888874 67899999999985 78899975 68999986411 11 2466778898999997 45
Q ss_pred EecCCeEEEEEEeC
Q 030130 69 SVGLRNIHYLVKKA 82 (182)
Q Consensus 69 ~v~~rkIei~LkKk 82 (182)
++...-+.|+|.|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 66677789999986
No 39
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.20 E-value=0.14 Score=44.22 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=51.3
Q ss_pred cCCeEEEEEEcCCC---CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEec--CCeEEEEEE
Q 030130 12 RTDRVYITIDLPDA---QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVG--LRNIHYLVK 80 (182)
Q Consensus 12 r~d~V~LtI~l~d~---kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~--~rkIei~Lk 80 (182)
+...|.|+|.||++ +++.+++.. ..|.+.... ..|.|+|.|-.+|+++..+-++. .+.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~----~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSE-DRLSLSSPK----PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeC-CEEEEEeCC----CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 35689999999986 578999987 488888653 28999999999999999766654 477888873
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=94.40 E-value=0.38 Score=34.31 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC--C-----CCceEEEEeccCCcccCCceEEec-CCeEEEEEEe
Q 030130 13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP--D-----KIPYEVDIDLYDKVDVNESKASVG-LRNIHYLVKK 81 (182)
Q Consensus 13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~--~-----~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~LkK 81 (182)
.+...|++.+|+.+ +++|++.. +.|.+++.... . ...|.-.+.|-..|+++.-+-++. ..-+.|+|.|
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 45778999999975 78999986 59999987521 1 124666788999999999999996 7778888764
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=93.75 E-value=0.64 Score=33.34 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=48.7
Q ss_pred CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC----C-C------CceEEEEeccCCcccCCceEEe-cCCeEEEE
Q 030130 13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP----D-K------IPYEVDIDLYDKVDVNESKASV-GLRNIHYL 78 (182)
Q Consensus 13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~----~-~------~~Y~l~leLf~~IdpeeSk~~v-~~rkIei~ 78 (182)
.+.+.|++.+|+.+ +++|+++. +.|.+++.... . . ..|.-.+.|-..|+++..+..+ ...-+.|.
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 46788999999974 78999985 69999987421 1 1 2466678899999999888888 44555665
Q ss_pred E
Q 030130 79 V 79 (182)
Q Consensus 79 L 79 (182)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 4
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=89.72 E-value=4.1 Score=29.38 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=46.4
Q ss_pred CCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC-----CC-----CceEEEEeccCCcccCCceEEecCC-eEEE
Q 030130 13 TDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP-----DK-----IPYEVDIDLYDKVDVNESKASVGLR-NIHY 77 (182)
Q Consensus 13 ~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~-----~~-----~~Y~l~leLf~~IdpeeSk~~v~~r-kIei 77 (182)
.+.++|++.||+.+ +++|++.. +.|++++.... .. ..|.-.+.|-..|++++.+-++... .+.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 56799999999985 78999985 69999987521 11 1244567888899999887777654 4444
No 43
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=89.40 E-value=6.1 Score=28.18 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=47.4
Q ss_pred cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCC----CC---CceEEEEeccCCcccCCceEEec-CCeEEEE
Q 030130 12 RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGP----DK---IPYEVDIDLYDKVDVNESKASVG-LRNIHYL 78 (182)
Q Consensus 12 r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~----~~---~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~ 78 (182)
+.+.+.|++.||+.+ +++|++.. +.|++++.... .+ ..|.-.+.|-..|+++..+-++. ..-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 456788999999975 78999986 69999987521 11 24555677889999988887764 3434443
No 44
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=78.79 E-value=22 Score=25.80 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred cCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC-------CCceEEEEeccCCcccCCceEEec-CCeEEEEE
Q 030130 12 RTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD-------KIPYEVDIDLYDKVDVNESKASVG-LRNIHYLV 79 (182)
Q Consensus 12 r~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~-------~~~Y~l~leLf~~IdpeeSk~~v~-~rkIei~L 79 (182)
+.+.-.|++.+.+.+ +++|++.. +.|.++++.... ...|.-.+.|-..|+++.-+.++. ...+.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 344566888888864 88999986 699999886311 134666788999999999888887 44555543
No 45
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=76.08 E-value=37 Score=27.92 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=50.1
Q ss_pred eEEEecCC-eEEEEEEcCCCC--c-eeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130 7 VKWAQRTD-RVYITIDLPDAQ--D-VKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA 82 (182)
Q Consensus 7 v~WaQr~d-~V~LtI~l~d~k--d-vkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk 82 (182)
+.=.++.+ .|.|...||++. + +.|.|..+ ...+.+.. +..|.-.+.|-.+ .++..++++...-++|.|+|.
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~~---~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~ 168 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIRV---GEKYLKRVALPWP-DPEITSATFNNGILEIRIRRT 168 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEec---CCceEeeEecCCC-ccceeeEEEeCceEEEEEeec
Confidence 33445566 688999999984 4 67888753 44444432 2346667888877 466667788888899999987
Q ss_pred CC
Q 030130 83 EN 84 (182)
Q Consensus 83 ~~ 84 (182)
+.
T Consensus 169 ~~ 170 (177)
T PF05455_consen 169 EE 170 (177)
T ss_pred CC
Confidence 53
No 46
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=59.75 E-value=8.2 Score=31.74 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=6.2
Q ss_pred CcccCC-CCCCCCC
Q 030130 128 DFSKMN-MGGLDAE 140 (182)
Q Consensus 128 df~~m~-mgg~~~~ 140 (182)
||++++ +|++++|
T Consensus 147 Df~~~~~~~~~~d~ 160 (180)
T KOG3158|consen 147 DFGVLEGDGADDDM 160 (180)
T ss_pred ccccccccccCCCC
Confidence 555552 4444444
No 47
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=12 Score=34.69 Aligned_cols=82 Identities=22% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCeEEEecCCeEEEEEEcCCCCceeEEEec-CcEEEEEEeeCCCCCceEEEEeccCCcccCCc---eEEecCCeEEEE
Q 030130 3 RHPTVKWAQRTDRVYITIDLPDAQDVKLKLEP-EGKFFFSATSGPDKIPYEVDIDLYDKVDVNES---KASVGLRNIHYL 78 (182)
Q Consensus 3 ~~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~-~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeS---k~~v~~rkIei~ 78 (182)
++|++.-.|..+.++|.|..|-.+-.++++.. ++-+.|++. +|-+.+.+-+.+..+.. .+-..+..+.|+
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~------pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK 75 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAG------PYFLRLAGPGMVEDDARPNASYDAKDGYAHVK 75 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccc------hhHHhhcCcchhhhhccccCccccccceeEEe
Confidence 78999999999999999999855444444421 134666642 67788888888776653 344566889999
Q ss_pred EEeCCCc-ccccc
Q 030130 79 VKKAENK-WWSRL 90 (182)
Q Consensus 79 LkKk~~~-~WprL 90 (182)
+.|..++ +.+-|
T Consensus 76 ~~K~~~~e~F~~L 88 (466)
T KOG3247|consen 76 VPKFHPGEHFSDL 88 (466)
T ss_pred ecCCCccccccch
Confidence 9997765 66654
No 48
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=43.61 E-value=6.8 Score=25.56 Aligned_cols=11 Identities=64% Similarity=1.362 Sum_probs=8.7
Q ss_pred ceecCCccccc
Q 030130 101 LKVDWDKWIDE 111 (182)
Q Consensus 101 lkvDwdkw~DE 111 (182)
-++||++|+--
T Consensus 16 ~kvdWd~wvSf 26 (49)
T PF06543_consen 16 PKVDWDKWVSF 26 (49)
T ss_pred cccchHHheee
Confidence 36999999943
No 49
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=41.99 E-value=85 Score=25.71 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=56.2
Q ss_pred CeEE--EecCCeEEEEEEcCCCC--ceeEEEecCcEEEEEEeeCCC----------------CCceEEEEeccCCcccCC
Q 030130 6 TVKW--AQRTDRVYITIDLPDAQ--DVKLKLEPEGKFFFSATSGPD----------------KIPYEVDIDLYDKVDVNE 65 (182)
Q Consensus 6 ~v~W--aQr~d~V~LtI~l~d~k--dvkV~i~~~~~l~fs~~~~~~----------------~~~Y~l~leLf~~Idpee 65 (182)
++.| ..+.+...+.+.+|+.+ +++|.+++.+.+.+++..... ...|.-.+.|-..|+.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 4567 68888888999999874 789999864348887654110 113555677888887777
Q ss_pred ceEEecCCeEEEEEEeCCC
Q 030130 66 SKASVGLRNIHYLVKKAEN 84 (182)
Q Consensus 66 Sk~~v~~rkIei~LkKk~~ 84 (182)
-+..+...-+.|++.|..+
T Consensus 164 ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhhCCeEEEEEecccc
Confidence 7777777777888888665
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=40.56 E-value=53 Score=21.93 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCceEEEEeccCCcccCCceEEecCCeEEEEEEeCCC
Q 030130 48 KIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAEN 84 (182)
Q Consensus 48 ~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~~ 84 (182)
...|.+.++|-+ +.+++-.+++.++.|.|+-++...
T Consensus 6 ~~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 6 DDAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEecc
Confidence 357999999999 899999999999999999888654
No 51
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=39.72 E-value=11 Score=24.14 Aligned_cols=17 Identities=47% Similarity=0.866 Sum_probs=1.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 030130 160 TTPAGNREAPPPSTSSE 176 (182)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (182)
-.|+.++.||||.|+++
T Consensus 11 ipp~P~rPAPpPPtQNn 27 (47)
T PF04806_consen 11 IPPTPNRPAPPPPTQNN 27 (47)
T ss_dssp -----SS----------
T ss_pred CCCCCCCCCCCCCCccc
Confidence 35788999999999754
No 52
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=39.58 E-value=50 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=30.4
Q ss_pred CceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130 49 IPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (182)
Q Consensus 49 ~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~ 83 (182)
..|.+.++|-+ +.|++-++.+.++.+.|.-++..
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 57999999998 99999999999999999988754
No 53
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=36.58 E-value=1.7e+02 Score=21.28 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCCeEEEecCC-eEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEE-EEeccCCcccCCceEEec
Q 030130 4 HPTVKWAQRTD-RVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEV-DIDLYDKVDVNESKASVG 71 (182)
Q Consensus 4 ~P~v~WaQr~d-~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l-~leLf~~IdpeeSk~~v~ 71 (182)
.|..-|+-=.+ .|-|-|.=+++...+|.++.. .+++......++..|.| .|++- ...|..-++++.
T Consensus 3 eP~~WW~GMk~~~LQLmvyG~nI~~~~v~i~~~-gV~i~~v~~~~npNYLFv~L~i~-~akpg~~~i~~~ 70 (88)
T PF09087_consen 3 EPPNWWVGMKNPELQLMVYGKNIASAEVSISYP-GVTIKKVVKTDNPNYLFVYLDIS-DAKPGTFTINFK 70 (88)
T ss_dssp ESSEEETT-SS-EEEEEEESTTGGGSEEEE-BT-TEEEEEEEE-SSTTEEEEEEEE--T--SEEEEEEEE
T ss_pred CCCchhcCCCCCcEEEEEecCCcccCEEEEeCC-CeEEEEEEecCCCCEEEEEEecC-CCCCcEEEEEEE
Confidence 36666663332 577777777888888888753 67776554345566755 56665 666655555443
No 54
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.22 E-value=47 Score=27.47 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=16.3
Q ss_pred CCCCCCCcchhhhcccCCCCCCCCCCC
Q 030130 143 GGDENDESDTEEENEVGTTPAGNREAP 169 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (182)
++|.|.++|++..+.-+.+|+|.-..+
T Consensus 138 dedvd~~dd~evdae~~~~~~~~~~~~ 164 (184)
T KOG4032|consen 138 DEDVDEEDDEEVDAEDDEAPSGPVRMQ 164 (184)
T ss_pred ccccccchhhhhcccCCCCCCCCCCCC
Confidence 345556666666666666666655443
No 55
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=31.62 E-value=1.4e+02 Score=19.73 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEE
Q 030130 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDI 55 (182)
Q Consensus 4 ~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~l 55 (182)
.|.+.|+..................++.+...++|.|......+.-.|.+..
T Consensus 12 ~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a 63 (79)
T cd05734 12 PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKV 63 (79)
T ss_pred CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEE
Confidence 5889998754432111100101122333323346666543322334566654
No 56
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=28.44 E-value=1.1e+02 Score=21.31 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCceEEEEeccCCcccCCceEEecCCeEEEEEEeCC
Q 030130 48 KIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKAE 83 (182)
Q Consensus 48 ~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk~ 83 (182)
+..|.+.++|-+ |.+++-.+.+.++.+.|.-.+..
T Consensus 9 ~~~~~i~~~lPG-v~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 9 DDEYIVEADLPG-FKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEcc
Confidence 467999999998 89999999998898888887753
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=27.20 E-value=59 Score=32.29 Aligned_cols=6 Identities=33% Similarity=0.988 Sum_probs=3.1
Q ss_pred cccccc
Q 030130 86 WWSRLL 91 (182)
Q Consensus 86 ~WprL~ 91 (182)
||.-|.
T Consensus 540 Y~rLLs 545 (746)
T PTZ00429 540 YWRLLS 545 (746)
T ss_pred HHHHHc
Confidence 575443
No 58
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=26.95 E-value=2.1e+02 Score=19.43 Aligned_cols=52 Identities=12% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCCceEEEE
Q 030130 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDI 55 (182)
Q Consensus 4 ~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~l 55 (182)
.|.+.|+.....+.+...-......++.+...++|.|......+.-.|.+..
T Consensus 15 ~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a 66 (90)
T cd05726 15 QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQT 66 (90)
T ss_pred CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEE
Confidence 4779998765443222110011223444433346777644323334676665
No 59
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=25.63 E-value=45 Score=32.71 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCCCCCCcccCC-----CCCCCCCCCCCCCCCCcchhhhcccCC
Q 030130 122 MDFGDLDFSKMN-----MGGLDAEAAGGDENDESDTEEENEVGT 160 (182)
Q Consensus 122 ~~~~~~df~~m~-----mgg~~~~~~~~~~~~~~~~~~~~~~~~ 160 (182)
++.++|||++|. +-|.++..+|+|-. |++++|=.+|
T Consensus 611 ldt~nfDFsnLDTAGDALA~Y~~~~dGLDL~---dldDSAFGDA 651 (669)
T PF08549_consen 611 LDTSNFDFSNLDTAGDALAAYGEQNDGLDLG---DLDDSAFGDA 651 (669)
T ss_pred cccCCCccccccchhhHhhhccCcccCCCcc---ccchhhhhhh
Confidence 467889999993 44444444444443 4555555444
No 60
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=25.50 E-value=2.3e+02 Score=23.91 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=44.0
Q ss_pred CCeEEEecCCeEEEEEEcCCC-CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEe
Q 030130 5 PTVKWAQRTDRVYITIDLPDA-QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKK 81 (182)
Q Consensus 5 P~v~WaQr~d~V~LtI~l~d~-kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkK 81 (182)
-+++|.|....|+|++.+-.- ..+.+++..+--+.+-+.|.. .=.-...+.||+.= ..+..+.+-+|.++|+-
T Consensus 78 vrI~~S~~pg~vti~F~~g~h~akv~levq~ehPfFVyGqGWs-SC~P~rs~qly~L~---C~~LqVgDVCisLt~ne 151 (224)
T KOG4053|consen 78 VRIKSSGCPGSVTIIFEVGEHKAKVSLEVQVEHPFFVYGQGWS-SCNPRRSGQLYGLP---CEILQVGDVCISLTLNE 151 (224)
T ss_pred EEeeccCCCceEEEEEEeccccccceeeccCCCceEEeccccc-ccCccccccccCCc---ceeeeecCEEEEeeecc
Confidence 478999999999999877432 245555555422444444421 12234556666541 23566777888888764
No 61
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=24.00 E-value=2.4e+02 Score=20.37 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=27.1
Q ss_pred CCCeEEEecCCeEEEEEEcCCCCceeEEEecCcEEEEEEeeCCCCC-ceEEEEe
Q 030130 4 HPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKI-PYEVDID 56 (182)
Q Consensus 4 ~P~v~WaQr~d~V~LtI~l~d~kdvkV~i~~~~~l~fs~~~~~~~~-~Y~l~le 56 (182)
.|.|.|. ......|+ .+..+.+..++.|.|+-....+.. .|.+...
T Consensus 33 ~P~i~W~-~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 33 PLRIYWM-NSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CCEEEEE-CCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence 3789998 44333222 244566655688999866433333 5877654
No 62
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=4e+02 Score=21.48 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=45.8
Q ss_pred EEEEEEcCCC--CceeEEEecCcEEEEEEeeCCC-------CCceEEEEeccCCcccCCceEEecC-CeEEEEEEeCC
Q 030130 16 VYITIDLPDA--QDVKLKLEPEGKFFFSATSGPD-------KIPYEVDIDLYDKVDVNESKASVGL-RNIHYLVKKAE 83 (182)
Q Consensus 16 V~LtI~l~d~--kdvkV~i~~~~~l~fs~~~~~~-------~~~Y~l~leLf~~IdpeeSk~~v~~-rkIei~LkKk~ 83 (182)
.-|.+.+..- ..++|++.. +.|.+.++.... ...|.-.+.|-.-|+|+.-+.++.. ..+.|...|..
T Consensus 74 F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 74 FEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 3344444443 478888875 489999886311 1356667889999999998888876 55667776654
No 63
>PF15406 PH_6: Pleckstrin homology domain
Probab=22.80 E-value=76 Score=24.22 Aligned_cols=14 Identities=43% Similarity=0.821 Sum_probs=9.0
Q ss_pred CCCCeEEE-ecCCeE
Q 030130 3 RHPTVKWA-QRTDRV 16 (182)
Q Consensus 3 ~~P~v~Wa-Qr~d~V 16 (182)
-||.+.|| |+..-+
T Consensus 37 ah~~~AwAsqTGKGL 51 (112)
T PF15406_consen 37 AHPTAAWASQTGKGL 51 (112)
T ss_pred ccchhhhhhccCceE
Confidence 36777887 666543
No 64
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=22.63 E-value=2e+02 Score=21.81 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=25.9
Q ss_pred CceeEEEecCcEEEEEEeeCCCCCceEEEEeccCCcccCCceEEecCCeEEEEEEeC
Q 030130 26 QDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVNESKASVGLRNIHYLVKKA 82 (182)
Q Consensus 26 kdvkV~i~~~~~l~fs~~~~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei~LkKk 82 (182)
..+.++|..+++|.++... ++. +..+ ..+|++.+++|.++|+=.
T Consensus 34 ~~~~leF~~dGKL~v~~gn--ng~----~~~~-------~Gty~L~G~kLtL~~~p~ 77 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGE--KGK----EVKA-------DGTYKLDGNKLTLTLKAG 77 (111)
T ss_pred CceEEEEcCCCeEEEecCC--CCc----Eecc-------CceEEEECCEEEEEEcCC
Confidence 4667888777778777542 221 1111 457777777776665543
No 65
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.31 E-value=4.1e+02 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=21.1
Q ss_pred EeccCCcccCCceEEecCCeEEEEEEeCCC
Q 030130 55 IDLYDKVDVNESKASVGLRNIHYLVKKAEN 84 (182)
Q Consensus 55 leLf~~IdpeeSk~~v~~rkIei~LkKk~~ 84 (182)
.+|-.+.-|..-++++.++++.++|.|+..
T Consensus 108 vkl~ve~l~~~ltvsV~P~~~~Vti~kk~t 137 (403)
T COG4856 108 VKLQVEGLPDGLTVSVNPEKATVTIEKKVT 137 (403)
T ss_pred eeeEeecCCCCceEEEccceeEEEEeeeeE
Confidence 344556667777788888888888877653
No 66
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=20.15 E-value=3.4e+02 Score=19.93 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCeEEEEEEcCCC---CceeEEEecC---cEEEEEEe--------e-CCCCCceEEEEeccCCcccCCceEEecCCeEEE
Q 030130 13 TDRVYITIDLPDA---QDVKLKLEPE---GKFFFSAT--------S-GPDKIPYEVDIDLYDKVDVNESKASVGLRNIHY 77 (182)
Q Consensus 13 ~d~V~LtI~l~d~---kdvkV~i~~~---~~l~fs~~--------~-~~~~~~Y~l~leLf~~IdpeeSk~~v~~rkIei 77 (182)
...|..+|.+.+. |.|.|.++.+ ....+.|. . +..--.|.|.|.|-..+.+ ..++|+|
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~-------~~~~lef 90 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPP-------EGGRLEF 90 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T--------TS-SEE
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCccccc-------CCceEEE
Confidence 4577788888875 5678887643 11222221 1 1112357778877666655 4567888
Q ss_pred EEEeCCC--cccc
Q 030130 78 LVKKAEN--KWWS 88 (182)
Q Consensus 78 ~LkKk~~--~~Wp 88 (182)
+|+=... ++|.
T Consensus 91 ~I~Y~~~g~eyWD 103 (113)
T PF03370_consen 91 CIRYEVNGQEYWD 103 (113)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEeCCCEEec
Confidence 8765332 3785
Done!