Your job contains 1 sequence.
>030131
MEGQVGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLN
ANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFD
ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSS
QG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030131
(182 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2199882 - symbol:AT1G24050 "AT1G24050" species... 506 1.8e-48 1
DICTYBASE|DDB_G0270402 - symbol:DDB_G0270402 "unknown" sp... 201 2.9e-22 2
TAIR|locus:2020648 - symbol:AT1G70220 "AT1G70220" species... 256 5.5e-22 1
ZFIN|ZDB-GENE-040426-2164 - symbol:lsm12b "LSM12 homolog ... 207 8.6e-17 1
ZFIN|ZDB-GENE-040516-12 - symbol:lsm12a "LSM12 homolog a ... 200 4.7e-16 1
MGI|MGI:1919592 - symbol:Lsm12 "LSM12 homolog (S. cerevis... 199 6.0e-16 1
ASPGD|ASPL0000014693 - symbol:AN3955 species:162425 "Emer... 184 2.3e-14 1
SGD|S000001163 - symbol:LSM12 "Protein of unknown functio... 129 4.0e-08 1
FB|FBgn0036057 - symbol:CG14164 species:7227 "Drosophila ... 111 4.1e-05 1
>TAIR|locus:2199882 [details] [associations]
symbol:AT1G24050 "AT1G24050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 InterPro:IPR019181
Pfam:PF09793 SMART:SM00995 EMBL:AY094450 EMBL:AY133572
IPI:IPI00546352 RefSeq:NP_173816.2 UniGene:At.43856
UniGene:At.75005 IntAct:Q8L466 STRING:Q8L466 PRIDE:Q8L466
DNASU:839017 EnsemblPlants:AT1G24050.1 GeneID:839017
KEGG:ath:AT1G24050 TAIR:At1g24050 HOGENOM:HOG000265494
InParanoid:Q8L466 OMA:IVVMNEV PhylomeDB:Q8L466
ProtClustDB:CLSN2918793 Genevestigator:Q8L466 Uniprot:Q8L466
Length = 188
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 102/177 (57%), Positives = 132/177 (74%)
Query: 5 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPR--RNIRLLNAN 62
+GG GE+FAVG + S+K GDEF G VMA+D N + +EG K P +N R++NA+
Sbjct: 12 IGGEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNAS 71
Query: 63 YIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDAL 122
+I S+LG+ +DPLD +DL+ L+A+E LA+RQAEADA+R+GVGVT EAQ+IFDAL
Sbjct: 72 FITGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDAL 131
Query: 123 SKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGS 179
SKTLPV+W+ + I+VM EVRV SPYL + V GGT AAN RVKKVLE ER+RLQ G+
Sbjct: 132 SKTLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFGT 188
>DICTYBASE|DDB_G0270402 [details] [associations]
symbol:DDB_G0270402 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0270402 EMBL:AAFI02000005 eggNOG:NOG324640
InterPro:IPR019181 Pfam:PF09793 SMART:SM00995 OMA:NCTGPEN
RefSeq:XP_646772.1 EnsemblProtists:DDB0233400 GeneID:8617745
KEGG:ddi:DDB_G0270402 InParanoid:Q55BQ9 Uniprot:Q55BQ9
Length = 218
Score = 201 (75.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 43/93 (46%), Positives = 64/93 (68%)
Query: 84 LDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTLPVRWDKTVIVVMNEVRV 143
L++ + ++ +++A A +IGVGVT EAQ IF++LS+TLP W I+V+NEV++
Sbjct: 125 LNVQLIIKKQDEVIKKAAQKAMKIGVGVTPEAQEIFNSLSRTLPCDWSGENIIVLNEVKI 184
Query: 144 SSPYLPESVSGGTAAAN-ERVKKVLEFERKRLQ 175
SSPY E+ +G + ERVKKVLE ERK+L+
Sbjct: 185 SSPYNIENCTGPENCKSIERVKKVLEAERKKLK 217
Score = 72 (30.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 14 VGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP-----RRNIRLLNANYIKDFS 68
VG + IKTT ++F+G+V +D T ++I +S P +R +R++ + IK+
Sbjct: 17 VGLKVRIKTTSDEQFEGEVFNYDPVTTCIIILSD-ESTPAVVTQKRTVRIILESSIKEIK 75
Query: 69 FL 70
L
Sbjct: 76 CL 77
>TAIR|locus:2020648 [details] [associations]
symbol:AT1G70220 "AT1G70220" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR019181 Pfam:PF09793
SMART:SM00995 IPI:IPI00540648 RefSeq:NP_177179.2 UniGene:At.52461
PRIDE:F4I5D2 DNASU:843358 EnsemblPlants:AT1G70220.1 GeneID:843358
KEGG:ath:AT1G70220 OMA:KTLPIRW Uniprot:F4I5D2
Length = 224
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 58/137 (42%), Positives = 84/137 (61%)
Query: 41 MLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVR 98
++++QEG K P +++R++N NYI + LG+ + L K ++L L +E+ A+
Sbjct: 89 LVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AKNTLVNLDGLIEKENHAIS 147
Query: 99 QAEADAQRIGVGVTTEAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTAA 158
E +IG GVT E Q IFDA+SKTLP+RW ++VM +V + SPY + V GG
Sbjct: 148 NVE----KIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGDVFIRSPYHSDCVYGGPRM 203
Query: 159 ANERVKKVLEFERKRLQ 175
NERVK VL ERK+LQ
Sbjct: 204 VNERVKHVLGQERKKLQ 220
>ZFIN|ZDB-GENE-040426-2164 [details] [associations]
symbol:lsm12b "LSM12 homolog b (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-040426-2164 EMBL:BC059805 IPI:IPI00501954
RefSeq:NP_998313.1 UniGene:Dr.76714 Ensembl:ENSDART00000067526
GeneID:406422 KEGG:dre:406422 CTD:406422 eggNOG:NOG324640
GeneTree:ENSGT00390000006956 HOGENOM:HOG000006611
HOVERGEN:HBG057351 NextBio:20818024 Bgee:Q6PBA2 InterPro:IPR019181
Pfam:PF09793 SMART:SM00995 Uniprot:Q6PBA2
Length = 196
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 51/178 (28%), Positives = 91/178 (51%)
Query: 7 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PR-RNIRLLNANYI 64
G GE F+VG +S T LG G+V+AFD + ML ++ SG P ++ L+N Y+
Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64
Query: 65 KDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSK 124
+ + + P L++S+L R + A I GV+ E Q +F + K
Sbjct: 65 SEVDIINDRTET-PPPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHK 123
Query: 125 TLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 181
T+ +W + I+VM++V +S PY E+ G +A ++K++E + ++++ + Q
Sbjct: 124 TIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVEKHFRDVESQKTMQ 181
>ZFIN|ZDB-GENE-040516-12 [details] [associations]
symbol:lsm12a "LSM12 homolog a (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-040516-12 eggNOG:NOG324640
GeneTree:ENSGT00390000006956 HOGENOM:HOG000006611
HOVERGEN:HBG057351 InterPro:IPR019181 Pfam:PF09793 SMART:SM00995
EMBL:BC070015 IPI:IPI00485080 RefSeq:NP_999982.1 UniGene:Dr.16617
PRIDE:Q6NSN1 Ensembl:ENSDART00000043190 GeneID:407986
KEGG:dre:407986 CTD:407986 InParanoid:Q6NSN1 OMA:LAFDHNT
OrthoDB:EOG4CJVJ4 NextBio:20818611 ArrayExpress:Q6NSN1 Bgee:Q6NSN1
Uniprot:Q6NSN1
Length = 196
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 52/179 (29%), Positives = 93/179 (51%)
Query: 7 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PR-RNIRLLNANYI 64
G GE F+VG +S T LG G+V+AFD + ML ++ SG P ++ L+N Y+
Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64
Query: 65 KDFSFL-GQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALS 123
+ + +A+ P P L+ ++L R + A + GV+ E Q +F +
Sbjct: 65 SEVDIITDRAETP--PPLASLNFNKLVNRARAEKEDKLSLAYAVSAGVSVEGQQLFQTIH 122
Query: 124 KTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 181
KT+ +W + I+VM++V +S PY ++ G +A V+K++E + ++++ S Q
Sbjct: 123 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVEKHFRDVESQISVQ 181
>MGI|MGI:1919592 [details] [associations]
symbol:Lsm12 "LSM12 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] MGI:MGI:1919592 EMBL:AL954730
eggNOG:NOG324640 GeneTree:ENSGT00390000006956 HOGENOM:HOG000006611
HOVERGEN:HBG057351 InterPro:IPR019181 Pfam:PF09793 SMART:SM00995
OrthoDB:EOG4CJVJ4 EMBL:AK011126 EMBL:AK075668 EMBL:AK132889
EMBL:AK151118 EMBL:BX323852 EMBL:BC027784 IPI:IPI00132973
RefSeq:NP_766535.1 UniGene:Mm.259079 ProteinModelPortal:Q9D0R8
STRING:Q9D0R8 PhosphoSite:Q9D0R8 PaxDb:Q9D0R8 PRIDE:Q9D0R8
DNASU:268490 Ensembl:ENSMUST00000021297 Ensembl:ENSMUST00000107156
GeneID:268490 KEGG:mmu:268490 UCSC:uc007lqs.1 CTD:124801
InParanoid:Q9D0R8 OMA:TLKCASS NextBio:392331 Bgee:Q9D0R8
CleanEx:MM_LSM12 Genevestigator:Q9D0R8 Uniprot:Q9D0R8
Length = 195
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 49/163 (30%), Positives = 83/163 (50%)
Query: 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNANYIKD 66
GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N Y+ +
Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65
Query: 67 FSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL 126
+ + P L++S+L ++ + + A I GV+ E Q +F + KT+
Sbjct: 66 VEIINDRTET-PPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTI 124
Query: 127 P-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
+W + IVVM EV ++ PY E+ G +A V+K++E
Sbjct: 125 KDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
>ASPGD|ASPL0000014693 [details] [associations]
symbol:AN3955 species:162425 "Emericella nidulans"
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] EMBL:BN001302 InterPro:IPR019181
Pfam:PF09793 SMART:SM00995 EnsemblFungi:CADANIAT00004738
HOGENOM:HOG000215398 OMA:NCTGPEN Uniprot:C8V620
Length = 247
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 62/186 (33%), Positives = 98/186 (52%)
Query: 14 VGCLLSIKTTLGDE-FDGQVMAFDRFTNMLVIQ--EGLKSGPRRNIRLLNANYIKDFSFL 70
VG + I T +G V D TN++ + +G ++G N ++ + I+ F L
Sbjct: 39 VGARVRITTNPATSTIEGIVFTADPITNLVAVNTADGKQTGAG-NYHVIPISRIQSFELL 97
Query: 71 --------GQADDPLD--PKKCFLDLSRLQAREHLAVRQAE-ADAQRIGVGVTTEAQNIF 119
G A D P LD+ L+ RE AV + + A+A+R G GVT EAQ++F
Sbjct: 98 SLPPSAQSGGATSFSDAQPSLHALDIRALKKREADAVVEMQNAEARR-GKGVTREAQDLF 156
Query: 120 DALSKTLPV-RWDKTVIVVMNEVRVSSPYLPES----VSGGTAAANERVKKVLEFERKRL 174
+A +T+P RWD I+V + V ++ PY + V+G TAA R++KVLE ER+++
Sbjct: 157 NAFIRTMPTTRWDGANIIVADAVSIAPPYRVDDCRPLVAGDTAAL-ARIRKVLEMERQKI 215
Query: 175 QARGSS 180
+ R +S
Sbjct: 216 EFRNAS 221
>SGD|S000001163 [details] [associations]
symbol:LSM12 "Protein of unknown function that may function
in RNA processing" species:4932 "Saccharomyces cerevisiae"
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005840 "ribosome" evidence=IDA] [GO:0016070
"RNA metabolic process" evidence=ISS;IPI] [GO:0003723 "RNA binding"
evidence=ISS] SGD:S000001163 GO:GO:0005634 EMBL:BK006934
GO:GO:0003723 GO:GO:0016070 GO:GO:0010494 EMBL:U00059
eggNOG:NOG324640 GeneTree:ENSGT00390000006956 InterPro:IPR019181
Pfam:PF09793 SMART:SM00995 EMBL:AY557853 PIR:S48963
RefSeq:NP_011989.1 ProteinModelPortal:P38828 SMR:P38828
DIP:DIP-5545N IntAct:P38828 MINT:MINT-541881 STRING:P38828
PaxDb:P38828 PeptideAtlas:P38828 EnsemblFungi:YHR121W GeneID:856521
KEGG:sce:YHR121W CYGD:YHR121w HOGENOM:HOG000000885 OMA:RIVERSW
OrthoDB:EOG4B01ZW NextBio:982281 Genevestigator:P38828
GermOnline:YHR121W InterPro:IPR016521 PIRSF:PIRSF007783
Uniprot:P38828
Length = 187
Score = 129 (50.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 39/181 (21%), Positives = 85/181 (46%)
Query: 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFL 70
E +G + + L +G++ +F+ N L IQ K+ +N +++ +IK +
Sbjct: 6 EQTLGFRIKVTNVLDVVTEGRLYSFNSSNNTLTIQTTKKNQSPQNFKVIKCTFIKHLEVI 65
Query: 71 GQADDPLDPKK-----CFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
G KK ++++ R++ +V ++ G GV+ E Q IFD + KT
Sbjct: 66 GDKPSFNSFKKQQIKPSYVNVERVEKLLKESVIASKKKELLRGKGVSAEGQFIFDQIFKT 125
Query: 126 L-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERV---KKVLEFERKRLQARGSSQ 181
+ +W I+++++V+V PY E + +N+ + ++++E ++L+ +
Sbjct: 126 IGDTKWVAKDIIILDDVKVQPPYKVEDIKVLHEGSNQSITLIQRIVERSWEQLEQDDGRK 185
Query: 182 G 182
G
Sbjct: 186 G 186
>FB|FBgn0036057 [details] [associations]
symbol:CG14164 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] EMBL:AE014296 GeneTree:ENSGT00390000006956
InterPro:IPR019181 Pfam:PF09793 SMART:SM00995 EMBL:BT022530
EMBL:BT022554 EMBL:BT022589 RefSeq:NP_001097566.1
RefSeq:NP_648371.1 UniGene:Dm.29628 IntAct:Q9VT67 MINT:MINT-982870
PRIDE:Q9VT67 EnsemblMetazoa:FBtr0076359 EnsemblMetazoa:FBtr0113157
GeneID:39167 KEGG:dme:Dmel_CG14164 UCSC:CG14164-RA
FlyBase:FBgn0036057 eggNOG:NOG256283 InParanoid:Q9VT67 OMA:TIAPPYR
OrthoDB:EOG40VT5P PhylomeDB:Q9VT67 NextBio:812300 Uniprot:Q9VT67
Length = 186
Score = 111 (44.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 12 FAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-----PRRNIRLLNANYIKD 66
F VG ++ KT GD G+V+AFD ML+++ +G N+ ++N + D
Sbjct: 8 FTVGSIVRCKTCFGDNISGEVVAFDLGVKMLIMKCPSSNGGGDEQTTCNVTIVNLSLCMD 67
Query: 67 FSFLGQADDPLDPKKCF-LDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
+ +A P + ++ +DL ++ R A + + Q +F L K
Sbjct: 68 IEIVKEAIPPAEVQQPEPIDLPMIRERYRYATEHRTLSCRSYHPNASPFGQALFRLLVKR 127
Query: 126 L--P-VRW----DKTVIVVMNEVRVSSPYLPESV 152
P + W D+ I ++ +V + +PY E++
Sbjct: 128 FGDPAIIWQNKGDQVAINILRQVVIDAPYATENI 161
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 182 182 0.00098 109 3 11 22 0.44 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 573 (61 KB)
Total size of DFA: 133 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.11u 0.10s 16.21t Elapsed: 00:00:01
Total cpu time: 16.11u 0.10s 16.21t Elapsed: 00:00:01
Start: Fri May 10 09:53:20 2013 End: Fri May 10 09:53:21 2013