BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030131
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CW5|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein From
           Thermus Thermophilus Hb8
 pdb|2CW5|B Chain B, Crystal Structure Of A Conserved Hypothetical Protein From
           Thermus Thermophilus Hb8
 pdb|2CW5|C Chain C, Crystal Structure Of A Conserved Hypothetical Protein From
           Thermus Thermophilus Hb8
          Length = 255

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 7   GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNML 42
           G G E  V  L  +   L +  +G+V+ FDRF N +
Sbjct: 153 GLGPEVPVETLARLPLALTEGPEGEVLTFDRFGNAI 188


>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
           Reductoisomerase From Zymomonas Mobilis
 pdb|1R0K|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
           Reductoisomerase From Zymomonas Mobilis
 pdb|1R0K|C Chain C, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
           Reductoisomerase From Zymomonas Mobilis
 pdb|1R0K|D Chain D, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
           Reductoisomerase From Zymomonas Mobilis
 pdb|1R0L|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
           Zymomonas Mobilis In Complex With Nadph
 pdb|1R0L|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
           Zymomonas Mobilis In Complex With Nadph
 pdb|1R0L|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
           Zymomonas Mobilis In Complex With Nadph
 pdb|1R0L|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
           Zymomonas Mobilis In Complex With Nadph
          Length = 388

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 27  EFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDL 86
           + D +   ++RF  + +  E +KSG  R   +  AN I   +F       LD K  FLD+
Sbjct: 294 QMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAF-------LDKKIGFLDI 346

Query: 87  SRL 89
           +++
Sbjct: 347 AKI 349


>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
 pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
 pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
 pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
 pdb|3S51|A Chain A, Structure Of Fanci
 pdb|3S51|B Chain B, Structure Of Fanci
 pdb|3S51|C Chain C, Structure Of Fanci
 pdb|3S51|D Chain D, Structure Of Fanci
          Length = 1308

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 8   SGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDF 67
           + E F +  + S+K +LG + D ++M +D F ++L          RRN +L ++     F
Sbjct: 578 ANETFCLEIIDSLKRSLGQQADIRLMLYDGFYDVL----------RRNSQLASSIMQTLF 627

Query: 68  SFLGQADDP 76
           S L Q  +P
Sbjct: 628 SQLKQFYEP 636


>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
           Methyltransferase (Asmt) In Complex With Sam
 pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
           Methyltransferase (Asmt) In Complex With Sam And
           N-Acetylserotonin
          Length = 353

 Score = 26.6 bits (57), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 15  GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSF 69
           G +L I++ L ++  G ++      NMLV  EG +  P     LL++   +DF F
Sbjct: 277 GGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,867,351
Number of Sequences: 62578
Number of extensions: 171159
Number of successful extensions: 303
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 7
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)