BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030131
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GP89|LSM12_XENLA Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1
Length = 194
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 5 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNAN 62
+ G GE FA+G +S +T G+V+AFD + ML ++ SG +I LLN +
Sbjct: 1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKANHADILLLNLD 60
Query: 63 YIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDAL 122
Y+ D + + P L++++L +R L + + A I GV+ + Q +F +
Sbjct: 61 YVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTI 119
Query: 123 SKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
KT+ +W + IVVM+EV +S PY E+ G A V K++E
Sbjct: 120 HKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166
>sp|Q6P833|LSM12_XENTR Protein LSM12 homolog OS=Xenopus tropicalis GN=lsm12 PE=2 SV=2
Length = 194
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 5 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNAN 62
+ G GE FA+G +S +T G+V+AFD + ML ++ SG P +I LLN +
Sbjct: 1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLLNLD 60
Query: 63 YIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDAL 122
Y+ D + + P L++++L +R L + + A I GV+ + Q +F +
Sbjct: 61 YVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTI 119
Query: 123 SKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
KT+ +W + IVVM E +S PY E+ G A V K++E
Sbjct: 120 HKTIKDCKWQEKNIVVMEEAVISPPYQVENCKGKEGRALCHVCKIVE 166
>sp|Q6PBA2|LS12A_DANRE Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1
Length = 196
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 7 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYI 64
G GE F+VG +S T LG G+V+AFD + ML ++ SG ++ L+N Y+
Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64
Query: 65 KDFSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALS 123
+ + + + P P L++S+L R + A I GV+ E Q +F +
Sbjct: 65 SEVDIINDRTETP--PPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIH 122
Query: 124 KTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 181
KT+ +W + I+VM++V +S PY E+ G +A ++K++E + ++++ + Q
Sbjct: 123 KTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVEKHFRDVESQKTMQ 181
>sp|Q6NSN1|LS12B_DANRE Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1
Length = 196
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 7 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYI 64
G GE F+VG +S T LG G+V+AFD + ML ++ SG ++ L+N Y+
Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64
Query: 65 KDFSFL-GQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALS 123
+ + +A+ P P L+ ++L R + A + GV+ E Q +F +
Sbjct: 65 SEVDIITDRAETP--PPLASLNFNKLVNRARAEKEDKLSLAYAVSAGVSVEGQQLFQTIH 122
Query: 124 KTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 181
KT+ +W + I+VM++V +S PY ++ G +A V+K++E + ++++ S Q
Sbjct: 123 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVEKHFRDVESQISVQ 181
>sp|Q5RAT5|LSM12_PONAB Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=2 SV=1
Length = 195
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNANYIKD 66
GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N Y+ +
Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65
Query: 67 FSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
+ + + P P L++S+L ++ + + A I GV+ E Q +F + KT
Sbjct: 66 VEIINDRTETP--PPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 123
Query: 126 LP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
+ +W + IVVM EV ++ PY E+ G +A V+K++E
Sbjct: 124 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
>sp|Q9D0R8|LSM12_MOUSE Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=1 SV=1
Length = 195
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNANYIKD 66
GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N Y+ +
Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65
Query: 67 FSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
+ + + P P L++S+L ++ + + A I GV+ E Q +F + KT
Sbjct: 66 VEIINDRTETP--PPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 123
Query: 126 LP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
+ +W + IVVM EV ++ PY E+ G +A V+K++E
Sbjct: 124 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
>sp|Q3MHD2|LSM12_HUMAN Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2
Length = 195
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNANYIKD 66
GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N Y+ +
Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65
Query: 67 FSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
+ + + P P L++S+L ++ + + A I GV+ E Q +F + KT
Sbjct: 66 VEIINDRTETP--PPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 123
Query: 126 LP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
+ +W + IVVM EV ++ PY E+ G +A V+K++E
Sbjct: 124 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
>sp|Q0VCF9|LSM12_BOVIN Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2
Length = 195
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNANYIKD 66
GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N Y+ +
Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65
Query: 67 FSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125
+ + + P P L++S+L ++ + + A I GV+ E Q +F + KT
Sbjct: 66 VEIINDRTETP--PPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 123
Query: 126 LP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 168
+ +W + IVVM EV ++ PY E+ G +A V+K++E
Sbjct: 124 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
>sp|Q5ZML5|LSM12_CHICK Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1
Length = 194
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 11/186 (5%)
Query: 5 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-PRR-NIRLLNAN 62
+ GE F+VG +S +T G+V+AFD + ML ++ SG P +I L+N
Sbjct: 1 MAAPGECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQ 60
Query: 63 YIKDFSFLG-QADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDA 121
Y+ + + + + P P L++S+L + + + + A I GV+ E Q +F
Sbjct: 61 YVSEVEIINDRTETP--PPLASLNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQT 118
Query: 122 LSKTLP-VRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLE-----FERKRLQ 175
+ KT+ +W + IVVM EV ++ PY E+ G +A V+K++E E +++
Sbjct: 119 IHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVEKHFRDVESQKVM 178
Query: 176 ARGSSQ 181
R +Q
Sbjct: 179 QRSQAQ 184
>sp|Q9VYR0|LS12A_DROME Protein LSM12 homolog A OS=Drosophila melanogaster GN=CG15735 PE=2
SV=2
Length = 217
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 9/164 (5%)
Query: 12 FAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPR-RNIRLLNANYIKDFSFL 70
F++G + T +E +G+V+AFD T ML+++ KS +I +N + + +
Sbjct: 16 FSIGSTVVCTTCFNEEVEGEVLAFDHNTKMLILKCRSKSTEELSDIYAMNLSLCSNVQVI 75
Query: 71 GQADDPL-DPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL--- 126
+ + DP+K L+ +++ R+ + RQ ++ V+ EAQ ++ A++K
Sbjct: 76 KECNGNFDDPQKLNLEQVKMRLRKTVERRQDYLKSK--NADVSPEAQELYRAIAKQYGYN 133
Query: 127 PVRWDKTVIVVMNEVRVSSPYLPESV--SGGTAAANERVKKVLE 168
V W I ++NEV +S PY ++V S + +K++++
Sbjct: 134 EVSWQGLNIQILNEVTISPPYRVDNVVSSSNNETSCNYIKRIIK 177
>sp|P38828|LSM12_YEAST Protein LSM12 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=LSM12 PE=1 SV=1
Length = 187
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Query: 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFL 70
E +G + + L +G++ +F+ N L IQ K+ +N +++ +IK +
Sbjct: 6 EQTLGFRIKVTNVLDVVTEGRLYSFNSSNNTLTIQTTKKNQSPQNFKVIKCTFIKHLEVI 65
Query: 71 GQADDP-------LDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALS 123
G D P K ++++ R++ +V ++ G GV+ E Q IFD +
Sbjct: 66 G--DKPSFNSFKKQQIKPSYVNVERVEKLLKESVIASKKKELLRGKGVSAEGQFIFDQIF 123
Query: 124 KTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERV 163
KT+ +W I+++++V+V PY E + +N+ +
Sbjct: 124 KTIGDTKWVAKDIIILDDVKVQPPYKVEDIKVLHEGSNQSI 164
>sp|Q9VT67|LS12B_DROME Protein LSM12 homolog B OS=Drosophila melanogaster GN=CG14164 PE=2
SV=1
Length = 186
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 12 FAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSG-----PRRNIRLLNANYIKD 66
F VG ++ KT GD G+V+AFD ML+++ +G N+ ++N + D
Sbjct: 8 FTVGSIVRCKTCFGDNISGEVVAFDLGVKMLIMKCPSSNGGGDEQTTCNVTIVNLSLCMD 67
Query: 67 FSFLGQADDPLD---PKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALS 123
+ +A P + P+ +DL ++ R A + + Q +F L
Sbjct: 68 IEIVKEAIPPAEVQQPEP--IDLPMIRERYRYATEHRTLSCRSYHPNASPFGQALFRLLV 125
Query: 124 KTL---PVRW----DKTVIVVMNEVRVSSPYLPESV 152
K + W D+ I ++ +V + +PY E++
Sbjct: 126 KRFGDPAIIWQNKGDQVAINILRQVVIDAPYATENI 161
>sp|Q9LF50|MEX1_ARATH Maltose excess protein 1, chloroplastic OS=Arabidopsis thaliana
GN=MEX1 PE=1 SV=2
Length = 415
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 86 LSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTLPVRWDKTVIV----VMNEV 141
L++L E + ++ A + + +G+ F LSKT+ W+ + + V+ ++
Sbjct: 185 LAQLTMAEAMPIQYFVATSAVVTIGLIVNCLYYFGKLSKTVWQLWEDVITIGGLSVLPQI 244
Query: 142 RVSS--PYLPESVSGGTAAANERVKKVLEFERKRLQARG 178
S+ P +P S+ GT A V ++ +L +G
Sbjct: 245 MWSTFVPLVPNSILPGTTAFGIAVAAIIMARTGKLSEKG 283
>sp|Q8LIY0|CSLC1_ORYSJ Probable xyloglucan glycosyltransferase 1 OS=Oryza sativa subsp.
japonica GN=CSLC1 PE=2 SV=1
Length = 690
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 43 VIQEGLKSGPRRNIRLLNANYIKDFSFLGQADDPLDPKKCFLD--LSRLQAREHLAVRQA 100
VI++G K+G ++ +N +Y+KD+ F+ D P+ FL + + E + + QA
Sbjct: 302 VIRDGYKAGNLKSA--MNCSYVKDYEFVVIFDADFQPQADFLKRTVPHFKGNEDVGLVQA 359
Query: 101 EADAQRIGVGVTTEAQNI 118
+ T QNI
Sbjct: 360 RWSFVNKDENLLTRLQNI 377
>sp|A7HLG3|RL9_FERNB 50S ribosomal protein L9 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplI PE=3 SV=1
Length = 149
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 115 AQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPY-----LPESVSG 154
+ NI D +SKTL +DK IV+ N ++ Y LP VSG
Sbjct: 95 SANISDVISKTLSKEFDKKWIVLDNPIKALGTYDVTVKLPGGVSG 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,964,966
Number of Sequences: 539616
Number of extensions: 2252761
Number of successful extensions: 5441
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5409
Number of HSP's gapped (non-prelim): 20
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)