Query 030131
Match_columns 182
No_of_seqs 110 out of 218
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y96_A Gemin6, SIP2, GEM-assoc 99.3 3.3E-12 1.1E-16 89.3 8.3 61 13-74 15-75 (86)
2 2vxe_A CG10686-PA; EDC3, CAR-1 97.9 0.0002 6.8E-09 49.8 10.3 73 3-75 1-87 (88)
3 1m5q_A SMAP3, small nuclear ri 97.4 0.0013 4.5E-08 49.0 9.6 104 13-127 8-127 (130)
4 2vc8_A Enhancer of mRNA-decapp 97.4 0.0013 4.6E-08 45.1 8.7 65 12-76 6-73 (84)
5 2fb7_A SM-like protein, LSM-14 97.2 0.0026 9E-08 44.7 8.6 65 10-74 14-92 (95)
6 4a53_A EDC3; RNA binding prote 96.6 0.0086 2.9E-07 44.0 7.3 66 3-74 1-66 (125)
7 2rm4_A CG6311-PB, DM EDC3; enh 96.4 0.036 1.2E-06 38.9 9.5 69 3-74 1-74 (103)
8 3s6n_G Small nuclear ribonucle 96.3 0.017 5.8E-07 38.7 7.3 63 9-71 8-74 (76)
9 1d3b_B Protein (small nuclear 96.1 0.016 5.4E-07 40.0 6.3 66 9-74 8-87 (91)
10 1h64_1 SnRNP SM-like protein; 96.1 0.015 5.1E-07 38.7 5.9 59 13-71 12-74 (75)
11 1th7_A SnRNP-2, small nuclear 96.0 0.025 8.4E-07 38.2 6.9 59 13-71 17-79 (81)
12 1i4k_A Putative snRNP SM-like 96.0 0.023 7.9E-07 37.9 6.5 59 13-71 12-74 (77)
13 1mgq_A SM-like protein; LSM, R 95.5 0.033 1.1E-06 37.9 6.0 55 13-67 23-81 (83)
14 4emk_B U6 snRNA-associated SM- 95.5 0.031 1.1E-06 37.2 5.6 59 13-71 12-74 (75)
15 1ljo_A Archaeal SM-like protei 95.4 0.052 1.8E-06 36.2 6.5 59 13-71 13-76 (77)
16 3s6n_F Small nuclear ribonucle 95.1 0.091 3.1E-06 35.9 7.1 61 13-73 14-78 (86)
17 4emk_C U6 snRNA-associated SM- 94.9 0.14 4.7E-06 36.9 7.9 62 13-74 31-103 (113)
18 1d3b_A Protein (small nuclear 94.6 0.18 6.2E-06 33.5 7.4 57 13-69 13-73 (75)
19 1b34_A Protein (small nuclear 94.5 0.17 5.9E-06 36.6 7.7 59 13-71 10-72 (119)
20 4emk_A U6 snRNA-associated SM- 94.5 0.18 6E-06 35.2 7.4 60 13-72 28-92 (94)
21 3pgw_B SM B; protein-RNA compl 94.5 0.11 3.6E-06 42.2 7.0 63 12-74 11-87 (231)
22 1i8f_A Putative snRNP SM-like 94.3 0.1 3.6E-06 35.1 5.7 58 13-70 19-79 (81)
23 3bw1_A SMX4 protein, U6 snRNA- 94.2 0.061 2.1E-06 37.6 4.5 60 13-72 18-88 (96)
24 4emh_A Probable U6 snRNA-assoc 94.0 0.33 1.1E-05 34.5 8.2 60 13-72 24-88 (105)
25 2y9a_D Small nuclear ribonucle 93.6 0.33 1.1E-05 35.6 7.8 57 13-69 13-73 (126)
26 4emg_A Probable U6 snRNA-assoc 93.3 0.1 3.5E-06 36.2 4.4 31 13-43 17-47 (93)
27 1n9r_A SMF, small nuclear ribo 93.3 0.14 4.7E-06 35.6 5.0 58 13-70 29-91 (93)
28 2fwk_A U6 snRNA-associated SM- 93.2 0.096 3.3E-06 38.1 4.2 61 13-73 36-115 (121)
29 3hfn_A ASL2047 protein; HFQ, S 93.0 0.7 2.4E-05 30.7 7.8 49 15-70 23-71 (72)
30 3hfo_A SSR3341 protein; HFQ, S 92.7 0.89 3E-05 30.0 7.9 48 15-69 21-68 (70)
31 1b34_B Protein (small nuclear 91.0 0.4 1.4E-05 34.6 5.3 57 15-71 39-113 (118)
32 2ylb_A Protein HFQ; RNA-bindin 89.0 2 6.9E-05 28.5 7.1 48 15-71 21-68 (74)
33 3sb2_A Protein HFQ; SM-like, R 88.3 2.3 8E-05 28.6 7.1 48 15-71 20-67 (79)
34 1kq1_A HFQ, HOST factor for Q 86.5 5.3 0.00018 26.7 8.0 47 15-69 19-65 (77)
35 2qtx_A Uncharacterized protein 86.3 4.8 0.00016 26.5 7.5 47 14-68 24-70 (71)
36 3s6n_E Small nuclear ribonucle 82.2 2.7 9.4E-05 28.9 5.3 56 14-69 25-89 (92)
37 2y90_A Protein HFQ; RNA-bindin 82.1 5.9 0.0002 28.0 7.0 48 15-71 21-68 (104)
38 3ahu_A Protein HFQ; SM-like mo 80.5 9 0.00031 25.6 7.1 48 15-70 23-70 (78)
39 2ftc_K 39S ribosomal protein L 80.0 10 0.00036 26.4 7.6 65 10-74 2-74 (98)
40 1u1s_A HFQ protein; SM-like ba 79.1 12 0.00041 25.3 7.5 48 15-71 19-66 (82)
41 3r8s_P 50S ribosomal protein L 77.9 4.2 0.00014 29.3 5.1 72 3-74 10-90 (114)
42 3v2d_T 50S ribosomal protein L 77.3 5.6 0.00019 29.8 5.9 72 3-74 13-93 (146)
43 2equ_A PHD finger protein 20-l 67.9 23 0.00077 23.2 7.1 57 3-65 1-57 (74)
44 2zjr_M 50S ribosomal protein L 65.1 8.7 0.0003 29.3 4.6 68 7-74 22-98 (166)
45 2jpi_A Hypothetical protein; a 62.4 13 0.00043 26.7 4.8 57 114-176 38-105 (118)
46 1y96_B Gemin7, SIP3, GEM-assoc 57.6 41 0.0014 22.7 8.3 55 14-68 28-82 (85)
47 1nz9_A Transcription antitermi 49.8 15 0.00051 22.4 3.1 36 10-45 3-38 (58)
48 1ib8_A Conserved protein SP14. 47.1 61 0.0021 24.2 6.7 54 14-71 103-160 (164)
49 3rux_A BIRA bifunctional prote 46.4 25 0.00085 28.4 4.7 35 11-46 220-254 (270)
50 2pi2_E Replication protein A 1 43.0 34 0.0012 25.2 4.6 39 1-47 22-67 (142)
51 2eqj_A Metal-response element- 41.7 68 0.0023 20.6 6.6 35 11-45 13-47 (66)
52 2fcg_F Cationic, antibacterial 40.4 11 0.00039 19.8 1.1 20 108-127 2-21 (26)
53 2e6z_A Transcription elongatio 40.1 14 0.0005 22.9 1.8 32 7-38 3-34 (59)
54 1zq1_A Glutamyl-tRNA(Gln) amid 35.8 59 0.002 28.4 5.6 58 12-74 12-74 (438)
55 1ycy_A Conserved hypothetical 34.0 93 0.0032 19.9 5.5 53 15-69 16-69 (71)
56 1hks_A Heat-shock transcriptio 33.9 23 0.00078 24.6 2.2 32 108-139 1-37 (106)
57 3p8b_B Transcription antitermi 33.5 1.3E+02 0.0046 21.6 6.7 59 8-68 88-146 (152)
58 3hmu_A Aminotransferase, class 33.0 74 0.0025 27.1 5.9 60 115-182 404-464 (472)
59 3sd4_A PHD finger protein 20; 31.4 98 0.0034 19.4 6.2 40 3-42 1-43 (69)
60 1qzv_F Plant photosystem I: su 28.0 1.1E+02 0.0038 22.4 5.1 38 87-125 12-49 (154)
61 3kf6_B Protein TEN1; OB fold, 27.3 76 0.0026 22.3 4.0 26 11-46 17-42 (105)
62 1ky9_A Protease DO, DEGP, HTRA 25.9 1.1E+02 0.0038 26.2 5.7 32 16-47 111-142 (448)
63 4a8c_A Periplasmic PH-dependen 24.1 1.1E+02 0.0039 26.0 5.4 31 16-46 88-118 (436)
64 3tjo_A Serine protease HTRA1; 23.8 1.5E+02 0.005 22.7 5.6 33 15-47 86-118 (231)
65 3stj_A Protease DEGQ; serine p 23.7 1.3E+02 0.0043 24.9 5.5 31 16-46 88-118 (345)
66 3kvp_A Uncharacterized protein 23.6 69 0.0024 20.8 2.9 16 31-46 41-56 (72)
67 3sti_A Protease DEGQ; serine p 23.2 1.3E+02 0.0044 23.5 5.3 32 16-47 88-119 (245)
68 2w5e_A Putative serine proteas 22.9 2.1E+02 0.0073 20.9 6.1 30 17-48 44-73 (163)
69 3kf8_B Protein TEN1; OB fold; 22.6 69 0.0024 23.1 3.1 20 28-47 28-47 (123)
70 3lgi_A Protease DEGS; stress-s 22.4 1.5E+02 0.0053 22.6 5.5 32 16-47 77-108 (237)
71 3hts_B Heat shock transcriptio 22.0 1.1E+02 0.0036 21.2 3.9 31 109-139 10-45 (102)
72 1whm_A Cylindromatosis tumor s 21.9 92 0.0031 21.3 3.5 35 3-38 1-35 (92)
73 3qii_A PHD finger protein 20; 21.5 1.9E+02 0.0065 19.4 6.3 53 9-67 19-71 (85)
74 2jvv_A Transcription antitermi 21.1 1.1E+02 0.0039 22.6 4.3 36 9-44 125-160 (181)
75 2eko_A Histone acetyltransfera 21.0 58 0.002 21.9 2.3 35 4-38 2-40 (87)
76 3ga8_A HTH-type transcriptiona 20.8 1.7E+02 0.0058 18.5 5.5 46 125-175 19-67 (78)
77 2ej9_A Putative biotin ligase; 20.1 98 0.0033 24.2 3.9 34 11-46 188-221 (237)
78 3p8d_A Medulloblastoma antigen 20.1 1.8E+02 0.0061 18.5 6.5 53 9-67 4-56 (67)
No 1
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.35 E-value=3.3e-12 Score=89.31 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=55.9
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
-+|++|+|++.+|++++|+||+|||++.+|+|..+ ..+++....+|++++|++|+++++.+
T Consensus 15 li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~-~~~~~~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 15 YIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF-LEDGSMSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp TTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE-CTTSCEEEEEECGGGEEEEEEEECCC
T ss_pred hcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec-ccCCeEEEEEEecceEEEEEEecchh
Confidence 38999999999999999999999999999999887 33678899999999999999998865
No 2
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.88 E-value=0.0002 Score=49.81 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCCCCCCCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec---C-C----------CCCcceEEEEecCCeeEEE
Q 030131 3 GQVGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG---L-K----------SGPRRNIRLLNANYIKDFS 68 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~---~-~----------~~~~~~~~iIn~~~Ik~i~ 68 (182)
|-|+-++...-+|+++.+.+..+=.++|.+|..|+...+|+|+.- . . .....++-+.+++-||++.
T Consensus 1 ~~~~~s~~~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~ 80 (88)
T 2vxe_A 1 GAMAMSGGLPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIR 80 (88)
T ss_dssp CCSSSCSSSCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEE
T ss_pred CcccccCCCcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEE
Confidence 567777778889999999999999999999999999999999652 1 1 1234578899999999999
Q ss_pred EecCCCC
Q 030131 69 FLGQADD 75 (182)
Q Consensus 69 vl~~~~~ 75 (182)
|++..+.
T Consensus 81 V~~~~p~ 87 (88)
T 2vxe_A 81 VVNNHTL 87 (88)
T ss_dssp ECCCCCC
T ss_pred EeccCCC
Confidence 9987653
No 3
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=97.40 E-value=0.0013 Score=48.99 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=69.0
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCCCCCCCCCCCCCHHHHHHH
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAR 92 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~~~~~~~l~~v~~~~l~~r 92 (182)
.+|++|.|.+.+|.++.|.+.+||.--|++.=.+....+..-..-+|+++.|..|...++ .+|...+++.
T Consensus 8 ~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~~~lg~v~IRG~nI~~I~~~d~----------~~d~~~f~~~ 77 (130)
T 1m5q_A 8 LLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIMYRYIVHIDSTER----------RIDMREFAKQ 77 (130)
T ss_dssp TTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTCCEEEEEEECGGGEEEEEECCC----------CCCHHHHHHH
T ss_pred hCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEcCCEeceEEEeCCeEEEEEcCCc----------ccCHHHHHHH
Confidence 479999999999999999999999777665544432223344567999999988764433 1455455543
Q ss_pred HHHHHHHH---------------HHHHHHcC-CCCCHHHHHHHHHHhhhcc
Q 030131 93 EHLAVRQA---------------EADAQRIG-VGVTTEAQNIFDALSKTLP 127 (182)
Q Consensus 93 ~~~ai~~~---------------~~~~~~~g-~gvs~egQ~lFd~L~Kt~p 127 (182)
.++. .-- +.+....| +|..|.||++++.+.+.+.
T Consensus 78 ~~r~-~pg~vk~~~e~~~v~v~~~~~v~~~gveg~g~~a~r~~~~~~~~~~ 127 (130)
T 1m5q_A 78 AEKI-FPGMVKYIEETNVVLIGDKVRVSEIGVEGVGPVAERAKRLFEEFLK 127 (130)
T ss_dssp HHHH-STTCEEEETTTTEEEETTTEEEETTEEECCSHHHHHHHHHHHHHC-
T ss_pred Hhhc-CCCceeeeeccceEEEeeeEEeeccccccCChHHHHHHHHHHHHHH
Confidence 3332 000 00111234 8899999999999988764
No 4
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=97.38 E-value=0.0013 Score=45.11 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=53.1
Q ss_pred eeeccEEEEEecCCC-EEEEEEEEEeCCCCeEEEEecCCCCCcc--eEEEEecCCeeEEEEecCCCCC
Q 030131 12 FAVGCLLSIKTTLGD-EFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYIKDFSFLGQADDP 76 (182)
Q Consensus 12 ~~vG~~V~vtt~~~~-~~~G~V~~~D~~~~~lvL~~~~~~~~~~--~~~iIn~~~Ik~i~vl~~~~~~ 76 (182)
.-+|+.|++.+.++- +|+|.|+.+|+..++|+|...-.+|-++ .--.+...-|+++++++-+.++
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~NG~~~~s~eVtls~~DI~~L~ii~~~~~~ 73 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITELKILEIPGPG 73 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEETTEECSSSEEEEEGGGCSEEEEEECCCSS
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhhCCCCCCCcEEEEEecChhheEEEecCCCC
Confidence 458999999999996 9999999999999999998875554322 3456788999999999875543
No 5
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.19 E-value=0.0026 Score=44.70 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=52.8
Q ss_pred CceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC--------------CCCcceEEEEecCCeeEEEEecCCC
Q 030131 10 EEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK--------------SGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 10 ~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~--------------~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
...-+|+++.+.+..+=.|+|.+|..|+...+|+|+.-.+ .....++-+.+++-||++.|+..+.
T Consensus 14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p~ 92 (95)
T 2fb7_A 14 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 92 (95)
T ss_dssp --CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCCSC
T ss_pred cCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecCCC
Confidence 3456999999999999999999999999999999966211 1234578899999999999987543
No 6
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.56 E-value=0.0086 Score=43.96 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=50.6
Q ss_pred CCCCCCCCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCC
Q 030131 3 GQVGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
|.|+-+...| +|..|.|++.+|.+++|.|-.+|+.+-+|-|..... +.--|+.+.|++++|++-+.
T Consensus 1 ~~~~~~~sqF-lGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~-----s~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 1 GAMGMSVADF-YGSNVEVLLNNDSKARGVITNFDSSNSILQLRLAND-----STKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp CCCCCCHHHH-TTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTT-----EEEEEEGGGEEEEEECCSCC
T ss_pred CCccccHHHh-cCceEEEEECCCCEeeEEEEeecCCeeEEecccccc-----ccceeecccccceeeeeccc
Confidence 3444443333 799999999999999999999998776665576532 22289999999999998654
No 7
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=96.43 E-value=0.036 Score=38.91 Aligned_cols=69 Identities=19% Similarity=0.420 Sum_probs=52.0
Q ss_pred CCCCCCCCceeeccEEEEEecCC-CEEEEEEEEEeCCCCeEEEEecCCCCC----cceEEEEecCCeeEEEEecCCC
Q 030131 3 GQVGGSGEEFAVGCLLSIKTTLG-DEFDGQVMAFDRFTNMLVIQEGLKSGP----RRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~~~-~~~~G~V~~~D~~~~~lvL~~~~~~~~----~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
|.|+-..++| +|+.|+|...++ ..|+|.|-..|+.+ |+|..+-.||- ...--.+...-|+++++++...
T Consensus 1 ~~~~~~~edw-iG~~VSI~C~d~LGVyQG~I~~V~~~~--ItL~kaFrNGiplk~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 1 GAMGPTDQDW-IGCAVSIACDEVLGVFQGLIKQISAEE--ITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp CCSSCCSGGG-TTCEEEEEECTTTCEEEEEEEEEETTE--EEEEEEEETTEECSCSSSCEEEETTTEEEEEEEECCC
T ss_pred CCcCccccce-eceEEEEeeCCcceEeeEEEEEcccce--eEEhhhhhcCcCcCCCCceEEEEecchhheeeecccc
Confidence 5677666654 899999998877 59999999999644 88877655442 2234466778899999998654
No 8
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=96.33 E-value=0.017 Score=38.67 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecC--CC--CCcceEEEEecCCeeEEEEec
Q 030131 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL--KS--GPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 9 ~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~--~~--~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
.....+|++|.|++.+|.++.|.+.+||.--|++.=.+.. .. ...-..-+|+++.|..+..++
T Consensus 8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d 74 (76)
T 3s6n_G 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALE 74 (76)
T ss_dssp ------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC--
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEecc
Confidence 3445689999999999999999999999766655433321 11 122345789999998887654
No 9
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=96.09 E-value=0.016 Score=40.03 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecC------C-----CCC---cceEEEEecCCeeEEEEecCCC
Q 030131 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL------K-----SGP---RRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 9 ~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~------~-----~~~---~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
.....+|++|.|++.+|..+.|.+.+||.--|++.=.+.. . .+. .-..-+|+++.|..|.+.++++
T Consensus 8 ~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~~~ 87 (91)
T 1d3b_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 87 (91)
T ss_dssp CCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEECCC
T ss_pred HHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCCCC
Confidence 3445689999999999999999999999877766443321 0 000 1134589999999998876654
No 10
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=96.07 E-value=0.015 Score=38.67 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=42.2
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC-CC---CcceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK-SG---PRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~-~~---~~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|++.+|.++.|.+.+||.--|++.=.+... .+ ..-..-+|+++.|..+...+
T Consensus 12 ~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 12 SLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp TTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred HCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCC
Confidence 4799999999999999999999997776654443211 11 11234688999998876543
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=96.02 E-value=0.025 Score=38.23 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=43.0
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecC--CCCC--cceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL--KSGP--RRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~--~~~~--~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|++.+|.++.|.+.+||.--|++.=.+.. ..+. .-..-+|+++.|..|...+
T Consensus 17 ~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 17 SLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp HTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC-
T ss_pred hCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecC
Confidence 489999999999999999999999877665544321 1111 1234689999998887654
No 12
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=95.96 E-value=0.023 Score=37.89 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=42.9
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecC--CCC--CcceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL--KSG--PRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~--~~~--~~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|++.+|.++.|.+.+||.--|++.=.+.. ..+ ..-..-+|+++.|..|...+
T Consensus 12 ~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 12 SLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp TTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC
T ss_pred hCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCC
Confidence 479999999999999999999999877665443321 111 11245689999998887654
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=95.54 E-value=0.033 Score=37.85 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=38.9
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC-CC---CcceEEEEecCCeeEE
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK-SG---PRRNIRLLNANYIKDF 67 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~-~~---~~~~~~iIn~~~Ik~i 67 (182)
.+|++|.|++.+|.++.|.+.+||.--|++.=.+... .+ ..-..-+|+++.|..|
T Consensus 23 ~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i 81 (83)
T 1mgq_A 23 SLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYI 81 (83)
T ss_dssp TTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEE
T ss_pred hCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEE
Confidence 3799999999999999999999998776654433211 11 1123457888887655
No 14
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=95.50 E-value=0.031 Score=37.21 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC-CC---CcceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK-SG---PRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~-~~---~~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|++.+|.++.|++.+||.--|++.=.+... .+ ..-..-+|+++.|..+..++
T Consensus 12 ~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 12 VIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp TTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred hCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 3799999999999999999999998665543333211 11 11235688888888776553
No 15
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=95.37 E-value=0.052 Score=36.20 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=42.0
Q ss_pred eeccEEEEEecCC-CEEEEEEEEEeCCCCeEEEEecCC-CCC---cceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLG-DEFDGQVMAFDRFTNMLVIQEGLK-SGP---RRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~-~~~~G~V~~~D~~~~~lvL~~~~~-~~~---~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|++.+| .+++|.+.+||.--|++.=.+... .+. .-..-+|+++.|..+...+
T Consensus 13 ~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 13 MVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp TTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred HCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCC
Confidence 4789999999999 999999999998776654443211 111 1234588999988876543
No 16
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=95.08 E-value=0.091 Score=35.95 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=43.3
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC-CCC---cceEEEEecCCeeEEEEecCC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK-SGP---RRNIRLLNANYIKDFSFLGQA 73 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~-~~~---~~~~~iIn~~~Ik~i~vl~~~ 73 (182)
.+|++|.|++.+|.++.|++.+||.--|++.=.+... .+. .-..-+|+++.|..+...++.
T Consensus 14 ~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 14 LTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp HTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC--
T ss_pred hCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 3799999999999999999999998776654433211 111 123468999999988776543
No 17
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=94.90 E-value=0.14 Score=36.95 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=43.3
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec---CCC-C-------CcceEEEEecCCeeEEEEecCCC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG---LKS-G-------PRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~---~~~-~-------~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
.+|++|.|++.+|..+.|.+.+||.-.|++.=.+. ..+ + ..-..-+|+++.|..|..++...
T Consensus 31 ~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~e 103 (113)
T 4emk_C 31 YQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSE 103 (113)
T ss_dssp -CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC---
T ss_pred HcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccc
Confidence 38999999999999999999999987776543332 110 0 11235689999999988776443
No 18
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=94.57 E-value=0.18 Score=33.47 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=40.5
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--CCCCCc--ceEEEEecCCeeEEEE
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--LKSGPR--RNIRLLNANYIKDFSF 69 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~~~~~~--~~~~iIn~~~Ik~i~v 69 (182)
.+|++|.|++.+|.+++|++.+||.--|+..=.+. ...+.. -.--+|+++.|.-+.+
T Consensus 13 ~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~l 73 (75)
T 1d3b_A 13 AEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLIL 73 (75)
T ss_dssp TTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEE
T ss_pred hCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEc
Confidence 47999999999999999999999987765543332 111221 2335888888887753
No 19
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=94.51 E-value=0.17 Score=36.65 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=43.2
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--CCCCC--cceEEEEecCCeeEEEEec
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--LKSGP--RRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~~~~~--~~~~~iIn~~~Ik~i~vl~ 71 (182)
.+|++|.|.+.+|.++.|++.+||.--|++.=.+. ...+. .-..-+|+++.|..|.+.+
T Consensus 10 ~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd 72 (119)
T 1b34_A 10 LSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPD 72 (119)
T ss_dssp CTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCT
T ss_pred hCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEecc
Confidence 47899999999999999999999987776544332 11111 2245689999998876443
No 20
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=94.50 E-value=0.18 Score=35.23 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=42.4
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--C-CCCC--cceEEEEecCCeeEEEEecC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--L-KSGP--RRNIRLLNANYIKDFSFLGQ 72 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~-~~~~--~~~~~iIn~~~Ik~i~vl~~ 72 (182)
.+|++|.|++.+|.++.|++.+||.--|++.=.+. . +.+. .-..-+|+++.|.-|...++
T Consensus 28 ~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~~ 92 (94)
T 4emk_A 28 CIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGGK 92 (94)
T ss_dssp TTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC-
T ss_pred HcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCCC
Confidence 37899999999999999999999987665543321 1 1111 22456899999988765533
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=94.47 E-value=0.11 Score=42.17 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=45.4
Q ss_pred eeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--C----CC--------CCcceEEEEecCCeeEEEEecCCC
Q 030131 12 FAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--L----KS--------GPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 12 ~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~----~~--------~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
..+|++|+|++.+|.+|.|++.+||.-.|++.=.+. . ++ ...-..-+|+++.|..|.+-+...
T Consensus 11 klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~pPp 87 (231)
T 3pgw_B 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 87 (231)
T ss_pred HhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCCCC
Confidence 358999999999999999999999987765532221 0 00 011245689999999998776543
No 22
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=94.27 E-value=0.1 Score=35.07 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=41.7
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCC---cceEEEEecCCeeEEEEe
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP---RRNIRLLNANYIKDFSFL 70 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~---~~~~~iIn~~~Ik~i~vl 70 (182)
.+|++|.|++.+|.++.|.+.+||.--|++.=.+....+. .-..-+|+++.|..|...
T Consensus 19 ~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~lg~v~iRG~~I~~i~~~ 79 (81)
T 1i8f_A 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGENVLFISPV 79 (81)
T ss_dssp TTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECGGGEEEEEEC
T ss_pred HCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEEcCCcccCCCEEEECCCEEEEEEeC
Confidence 4789999999999999999999998776654433211111 123468899988877643
No 23
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.061 Score=37.59 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=42.4
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec----CCC----CC---cceEEEEecCCeeEEEEecC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG----LKS----GP---RRNIRLLNANYIKDFSFLGQ 72 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~----~~~----~~---~~~~~iIn~~~Ik~i~vl~~ 72 (182)
.+|++|.|++.+|..+.|.+.+||.--|++.=.+. ..+ +. .-..-+|+++.|..|...++
T Consensus 18 ~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 18 NLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp GTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred HCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 48999999999999999999999987776544332 100 10 11345889999988875543
No 24
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=94.00 E-value=0.33 Score=34.46 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=41.1
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--CCCCC---cceEEEEecCCeeEEEEecC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--LKSGP---RRNIRLLNANYIKDFSFLGQ 72 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~~~~~---~~~~~iIn~~~Ik~i~vl~~ 72 (182)
.+|++|.|++.+|.++.|++.+||.--|++.=.+. ...+. .-..-+|+++.|.-|.+.++
T Consensus 24 ~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~ 88 (105)
T 4emh_A 24 TQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 88 (105)
T ss_dssp --CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---
T ss_pred hCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHH
Confidence 48999999999999999999999987765543332 11121 22456899999988765443
No 25
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=93.63 E-value=0.33 Score=35.64 Aligned_cols=57 Identities=14% Similarity=0.263 Sum_probs=42.7
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec--CCCCC--cceEEEEecCCeeEEEE
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG--LKSGP--RRNIRLLNANYIKDFSF 69 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~--~~~~~--~~~~~iIn~~~Ik~i~v 69 (182)
.+|+.|.|++.+|.++.|++.+||.--|+..=.+. ...+. ...--+|+++.|..|.+
T Consensus 13 ~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~l 73 (126)
T 2y9a_D 13 AEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLIL 73 (126)
T ss_dssp CSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEEC
T ss_pred hCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEc
Confidence 58999999999999999999999987665544332 11222 22446899999998874
No 26
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=93.34 E-value=0.1 Score=36.24 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=27.5
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEE
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLV 43 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lv 43 (182)
.+|++|.|++.+|..+.|.+.+||.--|++.
T Consensus 17 ~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL 47 (93)
T 4emg_A 17 SLDEIVYVKLRGDRELNGRLHAYDEHLNMVL 47 (93)
T ss_dssp TTTSEEEEEETTTEEEEEEEEEECTTCCEEE
T ss_pred hCCCEEEEEECCCcEEEEEEEEECCcccEEe
Confidence 4899999999999999999999998776553
No 27
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=93.28 E-value=0.14 Score=35.65 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=41.2
Q ss_pred eeccEEEEEecCC-CEEEEEEEEEeCCCCeEEEEecCC-CCC---cceEEEEecCCeeEEEEe
Q 030131 13 AVGCLLSIKTTLG-DEFDGQVMAFDRFTNMLVIQEGLK-SGP---RRNIRLLNANYIKDFSFL 70 (182)
Q Consensus 13 ~vG~~V~vtt~~~-~~~~G~V~~~D~~~~~lvL~~~~~-~~~---~~~~~iIn~~~Ik~i~vl 70 (182)
.+|++|.|++.+| .++.|.+.+||.--+++.=.+... .+. .-..-+|+++.|.-|...
T Consensus 29 ~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~ 91 (93)
T 1n9r_A 29 LVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIREL 91 (93)
T ss_dssp GTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEEC
T ss_pred hCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeC
Confidence 4799999999999 999999999998776654433211 111 112468888888877543
No 28
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=93.15 E-value=0.096 Score=38.13 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=43.1
Q ss_pred eeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec---CC--------CC--------CcceEEEEecCCeeEEEEecCC
Q 030131 13 AVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG---LK--------SG--------PRRNIRLLNANYIKDFSFLGQA 73 (182)
Q Consensus 13 ~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~---~~--------~~--------~~~~~~iIn~~~Ik~i~vl~~~ 73 (182)
.+|++|.|++.+|..+.|.+.+||.--|++.=.+- .. .+ ..-..-+|+++.|..|...+++
T Consensus 36 ~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~~~ 115 (121)
T 2fwk_A 36 CIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDP 115 (121)
T ss_dssp TBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSSCC
T ss_pred HcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecCCC
Confidence 37999999999999999999999977766543221 00 01 1124569999999888765543
No 29
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.00 E-value=0.7 Score=30.70 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=38.4
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEe
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFL 70 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl 70 (182)
...|+|...+|+.++|.|.-+|| ++|.|....+ .--+|+-++|.-|..+
T Consensus 23 k~~V~I~L~tGd~l~G~i~WQD~--~cl~L~~~~~-----~~~LI~R~AI~~Ikp~ 71 (72)
T 3hfn_A 23 AAPVEIKLVTGDAITGRVLWQDP--TCVCIADENS-----RQTTIWKQAIAYLQPK 71 (72)
T ss_dssp CCEEEEEETTSCEEEEEEEEECS--SEEEEEC--------CEEEEEGGGEEEEEEC
T ss_pred CceEEEEecCCCEEEEEEEEECC--CEEEEEcCCC-----CeEEEEeeeeEEEEeC
Confidence 35799999999999999999999 7888885421 2378888998877643
No 30
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=92.66 E-value=0.89 Score=30.02 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=37.9
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEE
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSF 69 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~v 69 (182)
...|+|...+|+.++|.|.-+|| .+|.|+... + .--+|+-++|.-|..
T Consensus 21 k~~V~I~L~tG~~l~G~i~WQD~--~cl~L~~~~--~---~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 21 QTPVEIKLLTGDSLFGTIRWQDT--DGLGLVDDS--E---RSTIVRLAAIAYITP 68 (70)
T ss_dssp TCEEEEEETTSCEEEEEEEEECS--SEEEEECTT--C---CEEEEEGGGEEEEEE
T ss_pred CceEEEEecCCCEEEEEEEEeCC--CEEEEEcCC--C---CeEEEEeeeeEEEee
Confidence 35799999999999999999999 788887532 1 124888888887653
No 31
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=91.03 E-value=0.4 Score=34.58 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=40.3
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecC------CC--CC----------cceEEEEecCCeeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL------KS--GP----------RRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~------~~--~~----------~~~~~iIn~~~Ik~i~vl~ 71 (182)
|++|.|.+.+|..+.|.+.+||.--|++.=.+-. .. +. .-..-+|+++.|..|...+
T Consensus 39 ~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~ 113 (118)
T 1b34_B 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113 (118)
T ss_dssp TCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECC
T ss_pred CcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCc
Confidence 5999999999999999999999877766543321 10 00 1235688999988776543
No 32
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=89.05 E-value=2 Score=28.54 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
+..|.|-..+|..++|.|..||+ -+|.|.. + .-.+|.-++|+-|.-..
T Consensus 21 k~~Vti~L~nG~~l~G~I~~fD~--f~vlL~~----~---~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 21 RVPVSIYLVNGIKLQGQIESFDQ--FVILLKN----T---VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp TCCEEEEETTSCEEEEEEEEECS--SEEEEES----S---SEEEEEGGGEEEEEESS
T ss_pred CCcEEEEEeCCCEEEEEEEEECC--cEEEEEC----C---ceEEEEeeeEEEEeEcc
Confidence 56799999999999999999997 5666663 2 22589999999887544
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=88.35 E-value=2.3 Score=28.61 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=37.1
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
...|.|-..+|..++|.|.+||. -+|.|.. + . -.+|.-++|+-|.--.
T Consensus 20 k~~VtI~LvnG~~L~G~I~~fD~--f~VlL~~----g-~--~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 20 HVPVSIYLVNGIKLQGHVESFDQ--YVVLLRN----T-V--TQMVYKHAISTVVPAR 67 (79)
T ss_dssp TCCEEEEETTSCEEEEEEEEECS--SEEEEES----S-S--EEEEEGGGEEEEEESS
T ss_pred CCeEEEEEeCCCEEEEEEEEECC--cEEEEEC----C-c--eEEEEeeeEEEEeecC
Confidence 45799999999999999999997 4555541 2 2 2589999999887443
No 34
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=86.50 E-value=5.3 Score=26.66 Aligned_cols=47 Identities=13% Similarity=0.296 Sum_probs=37.4
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEE
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSF 69 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~v 69 (182)
+..|.|-..+|..++|.|.+||. -+|.|... + .-.+|.-++|+-|..
T Consensus 19 k~~VtI~L~nG~~l~G~I~~fD~--f~VlL~~~---g---~~qLIYKhAISTI~p 65 (77)
T 1kq1_A 19 QTEVTVFFLNGFQMKGVIEEYDK--YVVSLNSQ---G---KQHLIYKHAISTYTV 65 (77)
T ss_dssp TCEEEEEETTSCEEEEEEEEECS--SEEEEEET---T---EEEEEEGGGEEEEEC
T ss_pred CCeEEEEEeCCCEEEEEEEEECC--cEEEEEEC---C---eeEEEEeeeEEEEeE
Confidence 56899999999999999999997 56666642 2 225899999998863
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=86.31 E-value=4.8 Score=26.53 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.1
Q ss_pred eccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEE
Q 030131 14 VGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFS 68 (182)
Q Consensus 14 vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~ 68 (182)
-+..|.|-..+|..++|.|.+||. -+|.|... + .-.+|.-++|+.|.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~--ftVll~~~---g---~qqliYKhAISTI~ 70 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSN--YEIMVKVG---D---RNLLVFKHAIDYIE 70 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECS--SEEEEEET---T---EEEEEEGGGEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcc--eEEEEEeC---C---ceEEEEeeeeEeec
Confidence 466899999999999999999996 45555542 1 23688999998774
No 36
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=82.20 E-value=2.7 Score=28.86 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=37.8
Q ss_pred eccEEEEEe----cCCCEEEEEEEEEeCCCCeEEEEec--C-CCCC--cceEEEEecCCeeEEEE
Q 030131 14 VGCLLSIKT----TLGDEFDGQVMAFDRFTNMLVIQEG--L-KSGP--RRNIRLLNANYIKDFSF 69 (182)
Q Consensus 14 vG~~V~vtt----~~~~~~~G~V~~~D~~~~~lvL~~~--~-~~~~--~~~~~iIn~~~Ik~i~v 69 (182)
+|.+|+|+. .+|.+++|.+-+||.--|++.=.+. . +... .-..-+|+++.|..+.-
T Consensus 25 l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~ 89 (92)
T 3s6n_E 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89 (92)
T ss_dssp HHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEE
T ss_pred hCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEe
Confidence 677777776 8999999999999986665443332 1 1111 12456888888877653
No 37
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=82.07 E-value=5.9 Score=28.00 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=37.6
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
...|.|-+.+|..++|.|..||. -+|.|.. + .-.+|.-++|+-|....
T Consensus 21 k~~VtI~LvNG~~L~G~I~~fD~--f~VlL~~----~---kqqLIYKHAISTI~p~~ 68 (104)
T 2y90_A 21 RVPVSIYLVNGIKLQGQIESFDQ--FVILLKN----T---VSQMVYKHAISTVVPSR 68 (104)
T ss_dssp TCCEEEEETTSCEEEEEEEEECS--SEEEEES----S---SEEEEEGGGEEEEEESS
T ss_pred CCcEEEEEeCCCEEEEEEEEECC--cEEEEEC----C---ceEEEEeeeeEEEeecc
Confidence 34789999999999999999996 5566653 1 23689999999887554
No 38
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=80.49 E-value=9 Score=25.63 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=36.5
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEe
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFL 70 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl 70 (182)
+..|.|-..+|..++|.|-+||. -+|.|... + . -.+|.-++|+.|..-
T Consensus 23 ~~~Vtv~L~nG~~l~G~I~~fD~--f~VlL~~~---g-~--qqlIYKhAISTI~p~ 70 (78)
T 3ahu_A 23 NTYVTVFLLNGFQLRGQVKGFDN--FTVLLESE---G-K--QQLIYKHAISTFAPQ 70 (78)
T ss_dssp TCCEEEEETTSCEEEEEEEEECS--SEEEEESS---S-C--EEEEEGGGEEEEEES
T ss_pred CCcEEEEEeCCeEEEEEEEEEcc--eEEEEEEC---C-e--eEEEEcceEEEEeec
Confidence 45788999999999999999995 45555532 2 2 258999999988643
No 39
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=79.98 E-value=10 Score=26.40 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=44.5
Q ss_pred CceeeccEEEEEecCC------CEEEEEEEEEeC--CCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCC
Q 030131 10 EEFAVGCLLSIKTTLG------DEFDGQVMAFDR--FTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 10 ~~~~vG~~V~vtt~~~------~~~~G~V~~~D~--~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
++|.+|..|+|+...- +.|+|.|.+-.- .+.+.+|+.-+..-+---.--++...|.+|+|+....
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gk 74 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEK 74 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCc
Confidence 4688999998886432 579999999874 4566777665432222223346778999999997653
No 40
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=79.15 E-value=12 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=36.6
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
+..|.|-..+|..++|.|.+||. -+|.|.. + .-.+|.-++|+.|....
T Consensus 19 ~~~Vtv~L~NG~~l~G~I~~fD~--ftVlL~~----~---~qqLVYKHAISTI~p~~ 66 (82)
T 1u1s_A 19 RVPVSIYLVNGIKLQGQIESFDQ--FVILLKN----T---VSQMVYKHAISTVVPSR 66 (82)
T ss_dssp TCCEEEEETTSCEEEEEEEEECS--SEEEEES----S---SCEEEEGGGEEEEEESS
T ss_pred CCcEEEEEeCCcEEEEEEEEEcc--eEEEEec----C---ceEEEEeeeeEEEeecc
Confidence 45788899999999999999995 4455542 2 12689999999987544
No 41
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=77.88 E-value=4.2 Score=29.27 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=50.5
Q ss_pred CCCCCCCCceeeccEEEEEec--CCC-----EEEEEEEEEeC--CCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCC
Q 030131 3 GQVGGSGEEFAVGCLLSIKTT--LGD-----EFDGQVMAFDR--FTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQA 73 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~--~~~-----~~~G~V~~~D~--~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~ 73 (182)
.||...-++|.+|..|+|+.. .|+ .|+|.|.+-.- ...+++|+.-+..-+---.--++...|.+|+|+...
T Consensus 10 ~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~g 89 (114)
T 3r8s_P 10 EQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRG 89 (114)
T ss_dssp GGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECE
T ss_pred HHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEEcc
Confidence 478778899999999999975 343 79999999874 345677765433112222223567889999999765
Q ss_pred C
Q 030131 74 D 74 (182)
Q Consensus 74 ~ 74 (182)
.
T Consensus 90 k 90 (114)
T 3r8s_P 90 A 90 (114)
T ss_dssp E
T ss_pred c
Confidence 3
No 42
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=77.30 E-value=5.6 Score=29.76 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred CCCCCCCCceeeccEEEEEec--CC-----CEEEEEEEEEeC--CCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCC
Q 030131 3 GQVGGSGEEFAVGCLLSIKTT--LG-----DEFDGQVMAFDR--FTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQA 73 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~--~~-----~~~~G~V~~~D~--~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~ 73 (182)
.||...-+.|.+|..|+|+.. .| +.|+|.|.+..- ...+++|+.-+..-+---.--++...|.+|+|+...
T Consensus 13 ~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrrg 92 (146)
T 3v2d_T 13 RYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRG 92 (146)
T ss_dssp TTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECE
T ss_pred HHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEecC
Confidence 367777889999999999985 34 379999999874 345677766443112222233577899999999865
Q ss_pred C
Q 030131 74 D 74 (182)
Q Consensus 74 ~ 74 (182)
.
T Consensus 93 k 93 (146)
T 3v2d_T 93 R 93 (146)
T ss_dssp E
T ss_pred c
Confidence 3
No 43
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.92 E-value=23 Score=23.21 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCCCCCCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCee
Q 030131 3 GQVGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIK 65 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik 65 (182)
|+-+++...|.+|..|.-+=.+|.-+.++|-.++......|+... - +...+..+.|+
T Consensus 1 ~~~~~~~~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~D-----y-n~e~v~~~~lr 57 (74)
T 2equ_A 1 GSSGSSGFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYD-----G-VIRCLKRMHIK 57 (74)
T ss_dssp CCSCCSCCCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETT-----S-CEEEECGGGEE
T ss_pred CCcccCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEec-----C-CeEEecHHHCe
Confidence 566778889999999999977999999999999876445555431 1 55666666554
No 44
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=65.06 E-value=8.7 Score=29.34 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=47.6
Q ss_pred CCCCceeeccEEEEEecC--CC-----EEEEEEEEEeC--CCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCC
Q 030131 7 GSGEEFAVGCLLSIKTTL--GD-----EFDGQVMAFDR--FTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 7 ~~~~~~~vG~~V~vtt~~--~~-----~~~G~V~~~D~--~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
..-++|.+|..|+|+... |. .|+|.|.+..- .+.+++|+.-+..-+---.--++...|.+|+|+....
T Consensus 22 ~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrrGK 98 (166)
T 2zjr_M 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGK 98 (166)
T ss_dssp CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECCC
T ss_pred cCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecCCCccceEEEEeccc
Confidence 467889999999999863 43 89999999874 3456777654331122223345778999999998754
No 45
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=62.39 E-value=13 Score=26.68 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhcceEEcCCcEEEeeeEEEcCCCCCCCc-----------cCCChhHHHHHHHHHHHHHHHHhh
Q 030131 114 EAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESV-----------SGGTAAANERVKKVLEFERKRLQA 176 (182)
Q Consensus 114 egQ~lFd~L~Kt~pv~W~~~~IvV~d~V~I~pPY~~~n~-----------~~~~~~~l~rV~kIl~~~~~~~~~ 176 (182)
..++|-..++..+++.|++... .|.-||+.... .+.+...|.++|.||..+..+..-
T Consensus 38 yl~qLc~H~~hK~~ve~d~~~g------~i~fp~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~rFa~ 105 (118)
T 2jpi_A 38 YVNRLCKHWGHKFEVELTPERG------FIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRMAN 105 (118)
T ss_dssp HHHHHHHHTTTSSEEEECSSEE------EEECSSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhhCCceEcCCce------EEEeCCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 4455556777678899999765 55567764321 235678999999999999887743
No 46
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=57.56 E-value=41 Score=22.74 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=43.8
Q ss_pred eccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEE
Q 030131 14 VGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFS 68 (182)
Q Consensus 14 vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~ 68 (182)
.|..|.+++..+.++.|+.-++|.....+....-..+-+..+--+++++-|-++.
T Consensus 28 ~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~TPiGv~~eAlLR~~Dii~~s 82 (85)
T 1y96_B 28 VGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLRCSDIISYT 82 (85)
T ss_dssp TTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECCTTCCEEEEEEEGGGEEEEE
T ss_pred CCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCCCcccchhhhhhcCCEEEEE
Confidence 5899999999999999999999998777776655444455666788887777664
No 47
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=49.78 E-value=15 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=29.0
Q ss_pred CceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEE
Q 030131 10 EEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQ 45 (182)
Q Consensus 10 ~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~ 45 (182)
.++.+|..|+|+.-.-.-++|.|..+|+....+.+.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 457789999999777688999999999987555443
No 48
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=47.11 E-value=61 Score=24.19 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=36.2
Q ss_pred eccEEEEEec---CC-CEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEEEec
Q 030131 14 VGCLLSIKTT---LG-DEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLG 71 (182)
Q Consensus 14 vG~~V~vtt~---~~-~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~ 71 (182)
+|..|+|+|. .| ..++|.+.++|.. .++|....+ . ...-.-|..+.|+...+.-
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~~--~v~l~~~~k-~-~~~~~~i~~~~I~ka~l~~ 160 (164)
T 1ib8_A 103 VGKYIHVGLYQAIDKQKVFEGTLLAFEED--ELTMEYMDK-T-RKKTVQIPYSLVSKARLAV 160 (164)
T ss_dssp CSEEEEEECSSCSSSCSEEEEEEEEEETT--EEEEEEECS-S-CEEEEEECSSCCSSCEEEC
T ss_pred CCcEEEEEEecccCCceEEEEEEEEEeCC--EEEEEEecc-c-CCeEEEEEHHHCcEEEEEE
Confidence 8999999993 45 8999999999975 455543221 1 1123446777777766543
No 49
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=46.41 E-value=25 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.7
Q ss_pred ceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEe
Q 030131 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQE 46 (182)
Q Consensus 11 ~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~ 46 (182)
++..|..|++.+..|++++|.+...|+. +.|+|++
T Consensus 220 ~~~~g~~V~v~~~~~~~~~G~~~gId~~-G~L~v~~ 254 (270)
T 3rux_A 220 SLTIGSRVRVELPGGQDVVGIARDIDDQ-GRLCLDV 254 (270)
T ss_dssp BSSTTSEEEEECTTSCEEEEEEEEECTT-SCEEEEE
T ss_pred hcccCCEEEEEECCCeEEEEEEEEECCC-CeEEEEE
Confidence 4568999999988889999999999976 5555555
No 50
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=42.98 E-value=34 Score=25.22 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=26.8
Q ss_pred CCCCCCCCCC-------ceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec
Q 030131 1 MEGQVGGSGE-------EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 1 ~~~~m~~~~~-------~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~ 47 (182)
|+++|....+ .+-+|..|++. |.|-.++|..+.++|.++
T Consensus 22 ~~~~m~~~~pRVN~s~L~~fvGk~VriV--------GkV~~~~~~G~~~~l~s~ 67 (142)
T 2pi2_E 22 MVDMMDLPRSRINAGMLAQFIDKPVCFV--------GRLEKIHPTGKMFILSDG 67 (142)
T ss_dssp -CCGGGSCCEEECGGGGGGSTTCEEEEE--------EEEEEECTTSSEEEEECT
T ss_pred ccccccCCcceECHHHHHhhCCCEEEEE--------EEEeEEcCCCCEEEEEeC
Confidence 5666655421 22266777654 999999999999999986
No 51
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=41.73 E-value=68 Score=20.61 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=30.7
Q ss_pred ceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEE
Q 030131 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQ 45 (182)
Q Consensus 11 ~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~ 45 (182)
.|.+|.-|..+=.+|.-+.|+|...|...++=+++
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~ 47 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFII 47 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEE
Confidence 68999999999999999999999999876665554
No 52
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=40.36 E-value=11 Score=19.81 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHhhhcc
Q 030131 108 GVGVTTEAQNIFDALSKTLP 127 (182)
Q Consensus 108 g~gvs~egQ~lFd~L~Kt~p 127 (182)
|.+.-..||+|-|.|.++-|
T Consensus 2 g~~~kkIgQkIkdFf~~l~p 21 (26)
T 2fcg_F 2 GKEFKRIVQRIKDFLRNLVP 21 (26)
T ss_dssp CCSHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHHhcCc
Confidence 44556689999999999876
No 53
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.12 E-value=14 Score=22.88 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=27.6
Q ss_pred CCCCceeeccEEEEEecCCCEEEEEEEEEeCC
Q 030131 7 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRF 38 (182)
Q Consensus 7 ~~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~ 38 (182)
+....|.+|..|+|+.-.-.-++|.|..+|..
T Consensus 3 ~~~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e 34 (59)
T 2e6z_A 3 SGSSGFQPGDNVEVCEGELINLQGKILSVDGN 34 (59)
T ss_dssp CCCSSCCTTSEEEECSSTTTTCEEEECCCBTT
T ss_pred cccccCCCCCEEEEeecCCCCCEEEEEEEeCC
Confidence 34567899999999987778999999999985
No 54
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=35.75 E-value=59 Score=28.36 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=41.9
Q ss_pred eeeccEEEEEecCC---CEEEEEEEE-Ee-CCCCeEEEEecCCCCCcceEEEEecCCeeEEEEecCCC
Q 030131 12 FAVGCLLSIKTTLG---DEFDGQVMA-FD-RFTNMLVIQEGLKSGPRRNIRLLNANYIKDFSFLGQAD 74 (182)
Q Consensus 12 ~~vG~~V~vtt~~~---~~~~G~V~~-~D-~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~vl~~~~ 74 (182)
..+|..|+|++.+| .+++|.+.- ++ ...+.|||+-. +.+|+= |..+.|+++++++...
T Consensus 12 ~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~----~gyn~g-~~~~~~~~~~~~~~~~ 74 (438)
T 1zq1_A 12 INVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLE----NGYNIG-IALEKIRRIEVLERAK 74 (438)
T ss_dssp CCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEET----TSCEEE-EEGGGEEEEEEEECCC
T ss_pred CCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEcc----CCceee-echhhcceEEEeccCC
Confidence 45799999999887 799999993 33 13578999863 234543 4557788888888654
No 55
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=34.05 E-value=93 Score=19.92 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=34.1
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCC-CCCcceEEEEecCCeeEEEE
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLK-SGPRRNIRLLNANYIKDFSF 69 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~-~~~~~~~~iIn~~~Ik~i~v 69 (182)
|++|.+.-..+..|+|.+--||. ..|.|+.-.. .|++..-.|+..+-|.-|-.
T Consensus 16 g~rvAv~vg~ehSFtGiledFDe--EviLL~dV~D~~GNk~k~liv~idDinWimL 69 (71)
T 1ycy_A 16 GHKVAVSVGGDHSFTGTLEDFDE--EVILLKDVVDVIGNRGKQMLIGLEDINWIML 69 (71)
T ss_dssp TSEEEEEEC----CEEEEEEECS--SEEEEEEEEETTEEEEEEEEEEGGGEEEEEE
T ss_pred CcEEEEEecCcceeeeehhhcCc--ceeehhhHHHHhccccceeEEEeccceEEEe
Confidence 78999998888999999999997 5677765322 23444556777666665543
No 56
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=33.86 E-value=23 Score=24.57 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHhh-hc-c-eEE--cCCcEEEee
Q 030131 108 GVGVTTEAQNIFDALSK-TL-P-VRW--DKTVIVVMN 139 (182)
Q Consensus 108 g~gvs~egQ~lFd~L~K-t~-p-v~W--~~~~IvV~d 139 (182)
|.|+++--++||+.|.. .. . ++| +|+.++|.|
T Consensus 1 g~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d 37 (106)
T 1hks_A 1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQN 37 (106)
T ss_dssp CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSC
T ss_pred CCCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECC
Confidence 56788888999999986 33 4 899 456777776
No 57
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=33.49 E-value=1.3e+02 Score=21.59 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=41.7
Q ss_pred CCCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEEE
Q 030131 8 SGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDFS 68 (182)
Q Consensus 8 ~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i~ 68 (182)
....+.+|..|+|+.-.-.-++|.|..+|...+.+.+.-..- +..+--=|..+.|+.++
T Consensus 88 ~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~--gr~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 88 AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA--IVPIPVTIKGDYVRLIS 146 (152)
T ss_dssp TTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC--SSCCEEEEEGGGEEEEE
T ss_pred ccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec--ceeEEEEECHHHEEEec
Confidence 346788999999997666889999999999888877665432 23333345556665553
No 58
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=32.95 E-value=74 Score=27.11 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHHHHHHHhh-hcceEEcCCcEEEeeeEEEcCCCCCCCccCCChhHHHHHHHHHHHHHHHHhhhcCCCC
Q 030131 115 AQNIFDALSK-TLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQG 182 (182)
Q Consensus 115 gQ~lFd~L~K-t~pv~W~~~~IvV~d~V~I~pPY~~~n~~~~~~~~l~rV~kIl~~~~~~~~~~~~~~~ 182 (182)
+++++..|.+ -+=++..| +.++|.|||.... .....++++++++|+....++..+.+.+|
T Consensus 404 ~~~~~~~l~~~Gv~v~~~g------~~iRi~p~~~~t~--e~i~~~l~~l~~~l~~~~~~~~~~~~~~~ 464 (472)
T 3hmu_A 404 GYICRERCFANNLIMRHVG------DRMIISPPLVITP--AEIDEMFVRIRKSLDEAQAEIEKQGLMKS 464 (472)
T ss_dssp HHHHHHHHHHTTBCCEEET------TEEEECCCTTCCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCCB
T ss_pred HHHHHHHHHHCCcEEEecC------CEEEEECCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6677776554 33344434 6899999994321 12247889999999998888887777664
No 59
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=31.40 E-value=98 Score=19.41 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=30.3
Q ss_pred CCCCC---CCCceeeccEEEEEecCCCEEEEEEEEEeCCCCeE
Q 030131 3 GQVGG---SGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNML 42 (182)
Q Consensus 3 ~~m~~---~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~l 42 (182)
|-|+. ....|.+|.++.+.-..+..+..+|...|-....+
T Consensus 1 ~~~~p~~~~~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~ 43 (69)
T 3sd4_A 1 GHMHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKV 43 (69)
T ss_dssp CCCCCCCCTTCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEE
T ss_pred CCcCCCCCCCCCcCCCCEEEEEECCCCccccEEEEEeccCCEE
Confidence 45666 44589999999999877877889999987444444
No 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=28.01 E-value=1.1e+02 Score=22.42 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Q 030131 87 SRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKT 125 (182)
Q Consensus 87 ~~l~~r~~~ai~~~~~~~~~~g~gvs~egQ~lFd~L~Kt 125 (182)
.+.++|++..++..+.++..+-+|..| +-+|=..|.||
T Consensus 12 ~AFaKRlk~sVKKLE~RLkKYepgSpP-ALALqqqIeKT 49 (154)
T 1qzv_F 12 XXXXXXEKQALKKLQASLKLYADDSAP-ALAIKATMEXX 49 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHH
Confidence 367899999999999999888777554 44454444444
No 61
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=27.28 E-value=76 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.9
Q ss_pred ceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEe
Q 030131 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQE 46 (182)
Q Consensus 11 ~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~ 46 (182)
..++|.||+ |-|.|-+|| ++.|+|..
T Consensus 17 ~~~~G~KVR--------FLGCV~sY~--tg~L~Le~ 42 (105)
T 3kf6_B 17 DCKDGQKLR--------FLGCVQSYK--NGILRLID 42 (105)
T ss_dssp GSCTTCEEE--------EEEEEEEEE--TTEEEEEE
T ss_pred CCCCCCEEE--------EEEEeeeec--cEEEEEcc
Confidence 345777776 569999999 99999994
No 62
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=25.92 E-value=1.1e+02 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=28.4
Q ss_pred cEEEEEecCCCEEEEEEEEEeCCCCeEEEEec
Q 030131 16 CLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 16 ~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~ 47 (182)
..+.|++.+|.++.++|+.+|+.+.+-+|+-.
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 36788888999999999999999999999764
No 63
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=24.12 E-value=1.1e+02 Score=26.00 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.0
Q ss_pred cEEEEEecCCCEEEEEEEEEeCCCCeEEEEe
Q 030131 16 CLLSIKTTLGDEFDGQVMAFDRFTNMLVIQE 46 (182)
Q Consensus 16 ~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~ 46 (182)
..+.|++.+|..+.++|+.+|+.+.+-+|+-
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4788889999999999999999999988876
No 64
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=23.75 E-value=1.5e+02 Score=22.74 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=28.5
Q ss_pred ccEEEEEecCCCEEEEEEEEEeCCCCeEEEEec
Q 030131 15 GCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 15 G~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~ 47 (182)
...+.|++.+|..+.++++.+|+...+-+|+-.
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 457888889999999999999999888888764
No 65
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=23.68 E-value=1.3e+02 Score=24.87 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.7
Q ss_pred cEEEEEecCCCEEEEEEEEEeCCCCeEEEEe
Q 030131 16 CLLSIKTTLGDEFDGQVMAFDRFTNMLVIQE 46 (182)
Q Consensus 16 ~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~ 46 (182)
..+.|++.+|..+.++++.+|+...+-+|+-
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4678888899999999999999999888876
No 66
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=23.56 E-value=69 Score=20.80 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=14.4
Q ss_pred EEEEEeCCCCeEEEEe
Q 030131 31 QVMAFDRFTNMLVIQE 46 (182)
Q Consensus 31 ~V~~~D~~~~~lvL~~ 46 (182)
.||-||+.++-|.|+.
T Consensus 41 KIykyde~tNeI~LkK 56 (72)
T 3kvp_A 41 KIYEYNESRNEVKLKK 56 (72)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 6999999999999965
No 67
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=23.23 E-value=1.3e+02 Score=23.55 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.4
Q ss_pred cEEEEEecCCCEEEEEEEEEeCCCCeEEEEec
Q 030131 16 CLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 16 ~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~ 47 (182)
..+.|++.+|+.+.++++.+|+.+.+-+|+-.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~ 119 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEec
Confidence 36788888999999999999999998888764
No 68
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=22.88 E-value=2.1e+02 Score=20.86 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=23.2
Q ss_pred EEEEEecCCCEEEEEEEEEeCCCCeEEEEecC
Q 030131 17 LLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGL 48 (182)
Q Consensus 17 ~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~ 48 (182)
.++|++ +|..+..+|. +|+...+-+|+...
T Consensus 44 ~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv~~ 73 (163)
T 2w5e_A 44 FVNVCY-EGLMYEAKVR-YMPEKDIAFITCPG 73 (163)
T ss_dssp EEEEEE-TTEEEEEEEE-ECCSSSEEEEECCT
T ss_pred eEEEEE-CCEEEEEEEE-EECCCCEEEEEecC
Confidence 566776 7888889988 88888888887653
No 69
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=22.55 E-value=69 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.9
Q ss_pred EEEEEEEEeCCCCeEEEEec
Q 030131 28 FDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 28 ~~G~V~~~D~~~~~lvL~~~ 47 (182)
+-|+|+.||+.+..|+|..-
T Consensus 28 ~L~QVisYd~~sa~L~l~~~ 47 (123)
T 3kf8_B 28 ILAQVKDFIPHESTIVIDKV 47 (123)
T ss_dssp EEEEEEEEEGGGTEEEEECC
T ss_pred EEEEEEEEcCCCcEEEEEec
Confidence 66999999999999999764
No 70
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=22.37 E-value=1.5e+02 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=27.6
Q ss_pred cEEEEEecCCCEEEEEEEEEeCCCCeEEEEec
Q 030131 16 CLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEG 47 (182)
Q Consensus 16 ~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~ 47 (182)
..+.|++.+|..+.++++.+|+...+-+|+-.
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~ 108 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKIN 108 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 46788888899999999999999988888764
No 71
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=22.03 E-value=1.1e+02 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHhh-hc-c-eEEc--CCcEEEee
Q 030131 109 VGVTTEAQNIFDALSK-TL-P-VRWD--KTVIVVMN 139 (182)
Q Consensus 109 ~gvs~egQ~lFd~L~K-t~-p-v~W~--~~~IvV~d 139 (182)
..+++--++||+.|.. .. . +.|. |+.++|.|
T Consensus 10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d 45 (102)
T 3hts_B 10 MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPN 45 (102)
T ss_dssp CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcC
Confidence 7788999999999986 34 4 8994 67888876
No 72
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=21.88 E-value=92 Score=21.28 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCCCCCCCceeeccEEEEEecCCCEEEEEEEEEeCC
Q 030131 3 GQVGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRF 38 (182)
Q Consensus 3 ~~m~~~~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~ 38 (182)
|+-+.+.....||++++|.... .+-.|+|--..+.
T Consensus 1 ~~~~~~~~~i~VG~Rc~V~~~~-~~rrGtVrfvG~~ 35 (92)
T 1whm_A 1 GSSGSSGPPLEINSRVSLKVGE-TIESGTVIFCDVL 35 (92)
T ss_dssp CCSSCCSCSSCTTCEEEEEETT-EEEEEEEEEEECC
T ss_pred CCCcccccCccccCeEEEcCCC-ceeeEEEEEEecC
Confidence 4456677788999999998554 4788999777754
No 73
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.48 E-value=1.9e+02 Score=19.36 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=40.4
Q ss_pred CCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEE
Q 030131 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDF 67 (182)
Q Consensus 9 ~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i 67 (182)
...|.+|.+|..+=.++.-|.++|-+++....-.|+... .+...+....||-+
T Consensus 19 ~~~f~vGd~VlArW~D~~yYPAkI~sV~~~~~YtV~F~D------G~~etvk~~~IKp~ 71 (85)
T 3qii_A 19 SSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD------GVVQTVKHIHVKAF 71 (85)
T ss_dssp --CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETT------SCEEEEEGGGEEEC
T ss_pred CcccccCCEEEEEeCCCCEeeEEEEEECCCCeEEEEEeC------CCeEEecHHHcccC
Confidence 457899999999998889999999999987666666532 25677777777754
No 74
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=21.07 E-value=1.1e+02 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEE
Q 030131 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVI 44 (182)
Q Consensus 9 ~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL 44 (182)
...+.+|..|+|+.-.=.-++|.|..+|+..+.+.+
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V 160 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEE
Confidence 346789999999966657899999999987654433
No 75
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.03 E-value=58 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCCCCCCceeeccEEEEEe----cCCCEEEEEEEEEeCC
Q 030131 4 QVGGSGEEFAVGCLLSIKT----TLGDEFDGQVMAFDRF 38 (182)
Q Consensus 4 ~m~~~~~~~~vG~~V~vtt----~~~~~~~G~V~~~D~~ 38 (182)
+-+++...+.+|++|.|.- ..+..++.+|...+..
T Consensus 2 ~~~~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~ 40 (87)
T 2eko_A 2 SSGSSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDI 40 (87)
T ss_dssp CCCCSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCS
T ss_pred CcccccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEc
Confidence 3456778999999999986 4778889999988763
No 76
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.85 E-value=1.7e+02 Score=18.55 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=31.2
Q ss_pred hcceEEcCCcEEEee-eEEEcCCCCCCCccC--CChhHHHHHHHHHHHHHHHHh
Q 030131 125 TLPVRWDKTVIVVMN-EVRVSSPYLPESVSG--GTAAANERVKKVLEFERKRLQ 175 (182)
Q Consensus 125 t~pv~W~~~~IvV~d-~V~I~pPY~~~n~~~--~~~~~l~rV~kIl~~~~~~~~ 175 (182)
++++.|+|..++|.+ .-.+- ++|-. -+.....++.+++..|+++.+
T Consensus 19 ~~~~~~~G~~~~I~~Vp~~~C-----~~CGE~~~~~e~~~~~~~~~~~f~~~vd 67 (78)
T 3ga8_A 19 DIPYTFRGRKTVLKGIHGLYC-----VHCEESIMNKEESDAFMAQVKAFRASVN 67 (78)
T ss_dssp EEEEEETTEEEEEEEEEEEEE-----TTTCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEcCceeEEC-----CCCCCEEECHHHHHHHHHHHHHHHHHHh
Confidence 346788888887754 22221 24421 146778899999999999987
No 77
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=20.12 E-value=98 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=26.8
Q ss_pred ceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEe
Q 030131 11 EFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQE 46 (182)
Q Consensus 11 ~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~ 46 (182)
++..|..|++.+..+..++|.+...|+.-.++ ++
T Consensus 188 ~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~--~~ 221 (237)
T 2ej9_A 188 SITIGKQVKILLSNNEIITGKVYDIDFDGIVL--GT 221 (237)
T ss_dssp BSSTTCEEEEEETTSCEEEEEEEEECSSEEEE--EE
T ss_pred hCccCCEEEEEECCCeEEEEEEEEECCCCeEE--Ec
Confidence 34689999999877766999999999755544 54
No 78
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.05 E-value=1.8e+02 Score=18.51 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=39.6
Q ss_pred CCceeeccEEEEEecCCCEEEEEEEEEeCCCCeEEEEecCCCCCcceEEEEecCCeeEE
Q 030131 9 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRRNIRLLNANYIKDF 67 (182)
Q Consensus 9 ~~~~~vG~~V~vtt~~~~~~~G~V~~~D~~~~~lvL~~~~~~~~~~~~~iIn~~~Ik~i 67 (182)
...|.+|.+|..+=.++.-+.|+|-+++....-.|+... .+...+....|+-+
T Consensus 4 ~~~~~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F~d------G~~etvk~~~ikp~ 56 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD------GVVQTVKHIHVKAF 56 (67)
T ss_dssp -CCCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETT------SCEEEEEGGGEEEC
T ss_pred CcccccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEEeC------CceEEEeHHHcccC
Confidence 357899999999998889999999999987655665532 25566666666643
Done!