BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030132
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|B Chain B, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|C Chain C, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|D Chain D, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|E Chain E, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|F Chain F, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
pdb|2WMC|H Chain H, Crystal Structure Of Eukaryotic Initiation Factor 4e From
Pisum Sativum
Length = 178
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/98 (84%), Positives = 90/98 (91%)
Query: 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFY
Sbjct: 2 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFY 61
Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
CFK+KIEPKWEDP+CANGGKWT +PKGKSDTSWLYT+
Sbjct: 62 CFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTL 99
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 85/97 (87%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
FKNKIEPKWEDP+CANGGKWT+ +GKSDT WL+T+
Sbjct: 62 FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTL 98
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 69/97 (71%), Positives = 84/97 (86%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPLE++WTFWFDNP KS+Q WGS++ I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTV 146
FKNKIEPKWEDP+ ANGGKWT+ +GKSDT WL+T+
Sbjct: 62 FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTL 98
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
FK+ IEP WED GG+W + K + D WL T +CL D S VC
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
pdb|4DUM|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor
Length = 240
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 60 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
FK+ IEP WED GG+W + K + D WL T +CL D S VC
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 173
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gpppa
pdb|1IPC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e
Complexed With 7-methyl Gtp
pdb|2GPQ|A Chain A, Cap-Free Structure Of Eif4e Suggests Basis For Its
Allosteric Regulation
pdb|2V8W|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8W|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8X|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|A Chain A, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2V8Y|E Chain E, Crystallographic And Mass Spectrometric Characterisation
Of Eif4e With N7-Cap Derivatives
pdb|2W97|A Chain A, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
pdb|3TF2|A Chain A, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|B Chain B, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|C Chain C, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3TF2|D Chain D, Crystal Structure Of The Cap Free Human Translation
Initiation Factor Eif4e
pdb|3U7X|A Chain A, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|3U7X|B Chain B, Crystal Structure Of The Human Eif4e-4ebp1 Peptide Complex
Without Cap
pdb|4AZA|A Chain A, Improved Eif4e Binding Peptides By Phage Display Guided
Design.
pdb|4AZA|C Chain C, Improved Eif4e Binding Peptides By Phage Display Guided
Design
Length = 217
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 37 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
FK+ IEP WED GG+W + K + D WL T +CL D S VC
Sbjct: 94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 150
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ1|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methyl-Gdp
pdb|1EJ4|A Chain A, Cocrystal Structure Of Eif4e4E-Bp1 Peptide
pdb|1EJH|A Chain A, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|B Chain B, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|C Chain C, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1EJH|D Chain D, Eif4eEIF4G PEPTIDE7-Methyl-Gdp
pdb|1L8B|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
pdb|1L8B|B Chain B, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding
Protein (Eif4e) Bound To 7-Methylgpppg
Length = 190
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 10 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
FK+ IEP WED GG+W + K + D WL T +CL D S VC
Sbjct: 67 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 123
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTVC 147
F+N + P+WED A GGKW+ +GK D WL T+
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLL 135
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa-
4ebp1 Peptide
pdb|3AM7|A Chain A, Crystal Structure Of The Ternary Complex Of
Eif4e-M7gtp-4ebp2 Peptide
Length = 191
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL++ W WF F K TW +++R I F +VE+FW+LYN+I S L G D+
Sbjct: 11 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYT-VCL-----DSMSGFVC 156
FK+ IEP WED GG+W + K + D WL T +CL D S VC
Sbjct: 68 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVC 124
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL WT W+ P A K +W +R + +F +VEEFW++ NI P +L + +D++
Sbjct: 37 HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSG 153
F+N + P+WED A GGKW+ +D L+ L ++ G
Sbjct: 96 FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIG 139
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
PHPL+ SW+++ F K W + + TFS++E+FWS+ + P ++ G D Y
Sbjct: 9 PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTVCLDSMSG 153
FK+ I PKWEDP NGG+W +I + D +L+ L + G
Sbjct: 66 MFKSDIMPKWEDPKNENGGRW-LINVTARQDVDFLWDELLMLLIG 109
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL + WT W+ + +W I +F +VE+FWSLYN+I PS++ +G+D+
Sbjct: 70 HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWL-YTVCL 148
FK I P WED GG+W + K D WL +CL
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCL 169
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 50 HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
HPL++++TFW+ P + ++ +++ I TF+SVE+FW Y+++ P L +DF
Sbjct: 15 HPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDF 74
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
+ FK I+P WED NGGKW + KG + W
Sbjct: 75 HLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCW 109
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
HPL+ W W+ + W ++ + F +VE+FWSLYN+I S L G+D+Y
Sbjct: 3 HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWL 143
FK I+P WED GG+W V+ K K D WL
Sbjct: 60 FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWL 97
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
PL WTFW D + A S+++ IYT +V+ FWS+YNNI + L + ++
Sbjct: 31 PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
+ + P WE+ A GG W + PK + T W
Sbjct: 91 RGERRPLWEEESNAKGGVWKMKVPKDSTSTVW 122
>pdb|4DVE|A Chain A, Crystal Structure At 2.1 A Of The S-Component For Biotin
From An Ecf- Type Abc Transporter
pdb|4DVE|B Chain B, Crystal Structure At 2.1 A Of The S-Component For Biotin
From An Ecf- Type Abc Transporter
pdb|4DVE|C Chain C, Crystal Structure At 2.1 A Of The S-Component For Biotin
From An Ecf- Type Abc Transporter
Length = 198
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 124 ANGGKWTVIFPKGKSDTSWLYT-----VCLDSMSGFVCLCWFISLILNTKYGFKFVHVLG 178
NGG + + P G +WL+T L + WF LI+ +G FV +G
Sbjct: 88 GNGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVG 147
Query: 179 SCW 181
+ W
Sbjct: 148 AIW 150
>pdb|1MMO|D Chain D, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|E Chain E, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MTY|D Chain D, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|E Chain E, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 512
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 136 GKSDTSWLYTVCLDSMSGFVCLCWFIS 162
GK W C D SGF+ L WFI
Sbjct: 370 GKIYEEWRARGCEDPSSGFIPLMWFIE 396
>pdb|4GAM|A Chain A, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|F Chain F, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|K Chain K, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|P Chain P, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 527
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 136 GKSDTSWLYTVCLDSMSGFVCLCWFIS 162
GK W C D SGF+ L WFI
Sbjct: 384 GKIYEEWRARGCEDPSSGFIPLMWFIE 410
>pdb|1FZ4|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|A Chain A, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|B Chain B, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XMF|A Chain A, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|B Chain B, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|A Chain A, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|B Chain B, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|A Chain A, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|B Chain B, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XU5|A Chain A, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|B Chain B, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|A Chain A, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|B Chain B, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
Length = 527
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 136 GKSDTSWLYTVCLDSMSGFVCLCWFIS 162
GK W C D SGF+ L WFI
Sbjct: 384 GKIYEEWRARGCEDPSSGFIPLMWFIE 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,003,629
Number of Sequences: 62578
Number of extensions: 234940
Number of successful extensions: 360
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 22
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)