Query 030132
Match_columns 182
No_of_seqs 113 out of 638
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1670 Translation initiation 100.0 5.3E-47 1.2E-51 313.9 11.4 128 46-176 31-161 (212)
2 PTZ00040 translation initiatio 100.0 2.3E-44 5E-49 304.5 11.9 130 47-176 35-189 (233)
3 PF01652 IF4E: Eukaryotic init 100.0 3.4E-43 7.5E-48 281.4 12.3 126 51-176 1-130 (165)
4 KOG1669 Predicted mRNA cap-bin 100.0 6.9E-41 1.5E-45 271.9 7.0 131 46-176 26-156 (208)
5 COG5053 CDC33 Translation init 100.0 4.2E-34 9.1E-39 234.7 9.3 131 45-176 32-166 (217)
6 PF08977 BOFC_N: Bypass of For 56.5 5.3 0.00012 26.7 0.8 31 79-112 20-50 (51)
7 PF11525 CopK: Copper resistan 42.9 14 0.0003 26.4 1.2 21 99-120 10-30 (73)
8 PF08939 DUF1917: Domain of un 32.1 38 0.00082 29.3 2.4 27 124-150 148-174 (243)
9 COG3822 ABC-type sugar transpo 29.1 46 0.00099 28.4 2.3 29 107-135 91-125 (225)
10 PHA00689 hypothetical protein 27.8 34 0.00074 23.0 1.1 14 117-134 29-42 (62)
No 1
>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-47 Score=313.91 Aligned_cols=128 Identities=37% Similarity=0.684 Sum_probs=121.1
Q ss_pred CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (182)
Q Consensus 46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n 125 (182)
....|||++.|||||..+.++ .+|++.|+.|.+|+|||+||++|++|++||+|+.+|||+|||+||+||||||+|++
T Consensus 31 ~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~ 107 (212)
T KOG1670|consen 31 NHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKN 107 (212)
T ss_pred cccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccC
Confidence 456899999999999998653 39999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCC---ChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132 126 GGKWTVIFPKG---KSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 126 GGkw~i~i~k~---~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
||||+|.++++ .+|.+|+++|||+||++|-.+.+|||+|+++|...+.|+|
T Consensus 108 GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISv 161 (212)
T KOG1670|consen 108 GGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISV 161 (212)
T ss_pred CCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEE
Confidence 99999999964 6799999999999999999989999999999999999987
No 2
>PTZ00040 translation initiation factor E4; Provisional
Probab=100.00 E-value=2.3e-44 Score=304.55 Aligned_cols=130 Identities=28% Similarity=0.539 Sum_probs=116.5
Q ss_pred CCCCCCccceEEEEeCCCCc-ccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCce---------------eeee
Q 030132 47 QQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYCF 110 (182)
Q Consensus 47 ~~~hpL~~~WtfW~~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~---------------~~lF 110 (182)
...|||+++|||||+.+..+ .+..+|+++|++|++|+|||+||++|+||++||+|+.+++ ||||
T Consensus 35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF 114 (233)
T PTZ00040 35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF 114 (233)
T ss_pred CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence 45799999999999987543 4467899999999999999999999999999999998874 9999
Q ss_pred cCCCccCCCCCCCCCCcEEEEEcCC-----CChHHHHHHHHhhhccCCeeecceEeEEEE----EeeeCCeeEEE
Q 030132 111 KNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTVCLDSMSGFVCLCWFISLIL----NTKYGFKFVHV 176 (182)
Q Consensus 111 K~GIkP~WEDp~N~nGGkw~i~i~k-----~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l----~~k~~~~~v~v 176 (182)
|+||+||||||+|++||+|++++++ +.+|++|++|||++||+.+..+..||||+| ++|.+..+|+|
T Consensus 115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsI 189 (233)
T PTZ00040 115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEI 189 (233)
T ss_pred cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEE
Confidence 9999999999999999999999965 347999999999999999988899999996 55667777766
No 3
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=3.4e-43 Score=281.36 Aligned_cols=126 Identities=36% Similarity=0.675 Sum_probs=116.9
Q ss_pred CCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCcEEE
Q 030132 51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130 (182)
Q Consensus 51 pL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGGkw~ 130 (182)
||+++|||||+......+.++|+++|++|++|+|||+||++|++|++|++|+.+++|||||+||+||||||+|++||+|+
T Consensus 1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~ 80 (165)
T PF01652_consen 1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI 80 (165)
T ss_dssp EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence 79999999999665555578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC---ChHHHHHHHHhhhccCCeeec-ceEeEEEEEeeeCCeeEEE
Q 030132 131 VIFPKG---KSDTSWLYTVCLDSMSGFVCL-CWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 131 i~i~k~---~~d~iWe~llLa~ig~~~v~~-~~i~Gi~l~~k~~~~~v~v 176 (182)
|++++. .++++|+++||++||+.+... ..||||++++|.+..+|+|
T Consensus 81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~i 130 (165)
T PF01652_consen 81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISI 130 (165)
T ss_dssp EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEE
T ss_pred EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEE
Confidence 999998 899999999999999998754 8999999999999988876
No 4
>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-41 Score=271.92 Aligned_cols=131 Identities=28% Similarity=0.572 Sum_probs=126.0
Q ss_pred CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (182)
Q Consensus 46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n 125 (182)
+...|||++..+|||........+++|+++|++|++|.|||+||++|.||++|+.|+...++||||+||+|+|||++|.|
T Consensus 26 ~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~n 105 (208)
T KOG1669|consen 26 MDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANCN 105 (208)
T ss_pred CCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCCC
Confidence 66789999999999998877667899999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132 126 GGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 126 GGkw~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
||+|+|+++|+.+.++||+||||++|++|-.+++|||.|+++|.|++-|++
T Consensus 106 GgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSi 156 (208)
T KOG1669|consen 106 GGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISI 156 (208)
T ss_pred CCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhh
Confidence 999999999999999999999999999999999999999999999988764
No 5
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-34 Score=234.66 Aligned_cols=131 Identities=31% Similarity=0.624 Sum_probs=119.8
Q ss_pred CCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCC
Q 030132 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (182)
Q Consensus 45 ~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~ 124 (182)
-+...|||+..|||||..+...+ .+.|.+.|+.|++|+|||+||++.++|+.++.||..++|++||+||+|+|||++|+
T Consensus 32 ~f~~~hpl~~~wtlw~l~p~e~g-~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~ 110 (217)
T COG5053 32 HFMNKHPLAFHWTLWFLKPPEDG-LESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANM 110 (217)
T ss_pred hHhhcCccccceEEEEecCCccc-hhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccC
Confidence 36788999999999999887533 45599999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCC---ChHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132 125 NGGKWTVIFPKG---KSDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 125 nGGkw~i~i~k~---~~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
|||+|.+.++.. ..+++|+.+||++||..+ ..+.+|||+|.+-|.+.-+++|
T Consensus 111 ~Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAi 166 (217)
T COG5053 111 NGGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAI 166 (217)
T ss_pred CCCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEE
Confidence 999999999874 479999999999999997 4567999999999999988876
No 6
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=56.53 E-value=5.3 Score=26.70 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=23.2
Q ss_pred eeeeccHHHHHHhccccCCCCCCCCCceeeeecC
Q 030132 79 IYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKN 112 (182)
Q Consensus 79 I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~ 112 (182)
--++-|.|+||+-|..-...+ ..-++.+||+
T Consensus 20 ~Eti~s~ed~w~~Y~~WqLv~---q~~~~ivFrk 50 (51)
T PF08977_consen 20 EETIWSMEDFWAKYKGWQLVD---QDDDQIVFRK 50 (51)
T ss_dssp EEEEEEHHHHHHHSTTSEEEE---EETTEEEEEE
T ss_pred EeeeccHHHHHHhhcCcEEEE---ccCCEEEEEc
Confidence 358999999999999876643 3346777775
No 7
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=42.88 E-value=14 Score=26.37 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=15.2
Q ss_pred CCCCCCceeeeecCCCccCCCC
Q 030132 99 SKLAVGADFYCFKNKIEPKWED 120 (182)
Q Consensus 99 s~L~~~~~~~lFK~GIkP~WED 120 (182)
-.|..++.+|+||+|= -.=||
T Consensus 10 i~LkDGstvyiFKDGK-MamEd 30 (73)
T PF11525_consen 10 IPLKDGSTVYIFKDGK-MAMED 30 (73)
T ss_dssp EEBTTSEEEEEETTS--EEEEE
T ss_pred EecCCCCEEEEEcCCc-eehhh
Confidence 3588999999999994 33344
No 8
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=32.13 E-value=38 Score=29.30 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHhhhc
Q 030132 124 ANGGKWTVIFPKGKSDTSWLYTVCLDS 150 (182)
Q Consensus 124 ~nGGkw~i~i~k~~~d~iWe~llLa~i 150 (182)
.-.|||+|-++++.+|.+|..+.-+..
T Consensus 148 v~sGKWmlf~~~~~vd~~W~~Va~at~ 174 (243)
T PF08939_consen 148 VTSGKWMLFPPPDRVDEIWSKVAKATA 174 (243)
T ss_dssp ---EEEEEEE-TTHHHHHHHHHHHHHH
T ss_pred cccceeEEEcCHHHHHHHHHHHHHHHH
Confidence 347999999999999999998887754
No 9
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=29.11 E-value=46 Score=28.35 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=23.1
Q ss_pred eeeecCCCccC---C---CCCCCCCCcEEEEEcCC
Q 030132 107 FYCFKNKIEPK---W---EDPVCANGGKWTVIFPK 135 (182)
Q Consensus 107 ~~lFK~GIkP~---W---EDp~N~nGGkw~i~i~k 135 (182)
+++++.-+.|| | ||-.|.+||++++++-+
T Consensus 91 M~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~ 125 (225)
T COG3822 91 MHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWN 125 (225)
T ss_pred EEeccCCcCcccccccchhhhhhcCCceEEEEEec
Confidence 46666667786 4 88899999999999854
No 10
>PHA00689 hypothetical protein
Probab=27.83 E-value=34 Score=23.03 Aligned_cols=14 Identities=43% Similarity=1.234 Sum_probs=11.2
Q ss_pred CCCCCCCCCCcEEEEEcC
Q 030132 117 KWEDPVCANGGKWTVIFP 134 (182)
Q Consensus 117 ~WEDp~N~nGGkw~i~i~ 134 (182)
-|||. ||.|++.-.
T Consensus 29 rwedd----ggewvlmeg 42 (62)
T PHA00689 29 RWEDD----GGEWVLMEG 42 (62)
T ss_pred eeecC----CCcEEEEec
Confidence 49996 999998643
Done!