Query 030132
Match_columns 182
No_of_seqs 113 out of 638
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2idr_A Eukaryotic translation 100.0 6.6E-49 2.2E-53 319.0 12.1 128 49-176 1-128 (177)
2 1ap8_A Translation initiation 100.0 3.8E-48 1.3E-52 323.0 16.7 132 44-176 31-165 (213)
3 2jgb_A Eukaryotic translation 100.0 1.5E-47 5.1E-52 315.3 12.9 132 45-176 10-143 (195)
4 1ipb_A Eukaryotic translation 100.0 1.6E-47 5.5E-52 320.0 11.9 128 46-176 33-165 (217)
5 1l8b_A Eukaryotic translation 100.0 5.8E-47 2E-51 310.6 11.4 128 46-176 6-138 (190)
6 3hxi_A Eukaryotic translation 100.0 6.1E-47 2.1E-51 310.6 10.8 130 44-176 4-137 (189)
7 3m94_A Translation initiation 100.0 5.2E-46 1.8E-50 305.2 13.6 126 48-176 1-131 (189)
8 4axg_A Eukaryotic translation 100.0 9.2E-45 3.2E-49 308.5 13.3 129 45-176 65-196 (248)
9 1ztp_A Basophilic leukemia exp 97.6 3.5E-05 1.2E-09 65.4 3.4 52 121-178 121-173 (251)
10 2k0q_A Putative uncharacterize 40.9 10 0.00036 26.1 1.3 16 99-114 10-25 (74)
11 2av5_A Ribonuclease P protein 20.6 1E+02 0.0035 22.1 3.8 42 123-164 62-103 (120)
No 1
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=6.6e-49 Score=319.05 Aligned_cols=128 Identities=56% Similarity=1.021 Sum_probs=122.9
Q ss_pred CCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCcE
Q 030132 49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK 128 (182)
Q Consensus 49 ~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGGk 128 (182)
.|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+
T Consensus 1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~ 80 (177)
T 2idr_A 1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK 80 (177)
T ss_dssp CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence 59999999999999876566789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132 129 WTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 129 w~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
|+|+++|+.+|++|++|||++||+++..+.+|||++|++|.+.++|+|
T Consensus 81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsI 128 (177)
T 2idr_A 81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAI 128 (177)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEE
T ss_pred EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEE
Confidence 999999999999999999999999998888999999999999999876
No 2
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=3.8e-48 Score=322.97 Aligned_cols=132 Identities=30% Similarity=0.644 Sum_probs=122.2
Q ss_pred CCCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCC
Q 030132 44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123 (182)
Q Consensus 44 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N 123 (182)
..+...|||+++|||||+.+.. .+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|
T Consensus 31 ~~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N 109 (213)
T 1ap8_A 31 AHFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEAN 109 (213)
T ss_dssp CCCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTT
T ss_pred CCCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCC
Confidence 4577899999999999998864 456789999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcC-C-CChHHHHHHHHhhhccCCeeecc-eEeEEEEEeeeCCeeEEE
Q 030132 124 ANGGKWTVIFP-K-GKSDTSWLYTVCLDSMSGFVCLC-WFISLILNTKYGFKFVHV 176 (182)
Q Consensus 124 ~nGGkw~i~i~-k-~~~d~iWe~llLa~ig~~~v~~~-~i~Gi~l~~k~~~~~v~v 176 (182)
++||||+|+++ + ..+|++|++|||++||+++..+. +|||++|++|.+.++|+|
T Consensus 110 ~~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsI 165 (213)
T 1ap8_A 110 AKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFAL 165 (213)
T ss_dssp TTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEE
T ss_pred CCCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEE
Confidence 99999999984 3 47899999999999999987666 999999999999999876
No 3
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=1.5e-47 Score=315.35 Aligned_cols=132 Identities=27% Similarity=0.571 Sum_probs=123.6
Q ss_pred CCCCCCCCccceEEEEeCCCC--cccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCC
Q 030132 45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122 (182)
Q Consensus 45 ~~~~~hpL~~~WtfW~~~~~~--~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~ 122 (182)
.....|||+++|||||+.+.. +.+..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+
T Consensus 10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~ 89 (195)
T 2jgb_A 10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA 89 (195)
T ss_dssp CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence 366789999999999997532 234678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132 123 CANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 123 N~nGGkw~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
|++||+|+|+++|+.+|++|+++||++||+++..+.+|||++|++|.+.++|+|
T Consensus 90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsI 143 (195)
T 2jgb_A 90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISI 143 (195)
T ss_dssp TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEE
T ss_pred CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEE
Confidence 999999999999999999999999999999998889999999999999999876
No 4
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=1.6e-47 Score=319.95 Aligned_cols=128 Identities=33% Similarity=0.614 Sum_probs=120.2
Q ss_pred CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (182)
Q Consensus 46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n 125 (182)
....|||+++|||||+.+. +..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus 33 ~~~~hpL~~~Wt~W~~~~~---~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~ 109 (217)
T 1ipb_A 33 HYIKHPLQNRWALWFFKND---KSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 109 (217)
T ss_dssp GTSCCEEEEEEEEEEECCC---TTSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred cccCCCCCCeEEEEEEeCC---cccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 4568999999999999875 3678999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCC----hHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132 126 GGKWTVIFPKGK----SDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 126 GGkw~i~i~k~~----~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
||||+|++++.. +|++|++|||++||++| ..+.+|||++|++|.+.++|+|
T Consensus 110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsI 165 (217)
T 1ipb_A 110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAI 165 (217)
T ss_dssp CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEE
T ss_pred CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEE
Confidence 999999999864 49999999999999999 7788999999999999999876
No 5
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=5.8e-47 Score=310.61 Aligned_cols=128 Identities=32% Similarity=0.605 Sum_probs=118.0
Q ss_pred CCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCC
Q 030132 46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN 125 (182)
Q Consensus 46 ~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~n 125 (182)
....|||+++|||||+.+.+ ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++
T Consensus 6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~ 82 (190)
T 1l8b_A 6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 82 (190)
T ss_dssp ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence 45789999999999998753 568999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCC----hHHHHHHHHhhhccCCe-eecceEeEEEEEeeeCCeeEEE
Q 030132 126 GGKWTVIFPKGK----SDTSWLYTVCLDSMSGF-VCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 126 GGkw~i~i~k~~----~d~iWe~llLa~ig~~~-v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
||||+|++++.. +|++|++|||++||+++ ..+.+|||++|++|.+.++|+|
T Consensus 83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsI 138 (190)
T 1l8b_A 83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAI 138 (190)
T ss_dssp CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEE
T ss_pred CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEE
Confidence 999999998754 59999999999999999 6688999999999999998876
No 6
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=6.1e-47 Score=310.64 Aligned_cols=130 Identities=28% Similarity=0.551 Sum_probs=120.1
Q ss_pred CCCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCC
Q 030132 44 AVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123 (182)
Q Consensus 44 ~~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N 123 (182)
.++...|||+++|||||+++.. ..+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|
T Consensus 4 ~~~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N 80 (189)
T 3hxi_A 4 GSPEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKN 80 (189)
T ss_dssp ---CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHH
T ss_pred CCCCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCC
Confidence 4578899999999999998753 4689999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCC-ChHHHHHHHHhhhccCCe-eecce--EeEEEEEeeeCCeeEEE
Q 030132 124 ANGGKWTVIFPKG-KSDTSWLYTVCLDSMSGF-VCLCW--FISLILNTKYGFKFVHV 176 (182)
Q Consensus 124 ~nGGkw~i~i~k~-~~d~iWe~llLa~ig~~~-v~~~~--i~Gi~l~~k~~~~~v~v 176 (182)
++||||+|+++++ .+|++|+++||++||+++ ..+.+ |||++|++|.+.++|+|
T Consensus 81 ~~GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsI 137 (189)
T 3hxi_A 81 ENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSV 137 (189)
T ss_dssp HTCEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEE
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEE
Confidence 9999999999997 689999999999999999 66677 99999999999999876
No 7
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=5.2e-46 Score=305.20 Aligned_cols=126 Identities=31% Similarity=0.642 Sum_probs=117.8
Q ss_pred CCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCCCCc
Q 030132 48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127 (182)
Q Consensus 48 ~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~nGG 127 (182)
..|||+++|||||+.+. ...+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||
T Consensus 1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG 77 (189)
T 3m94_A 1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG 77 (189)
T ss_dssp CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence 36999999999999764 357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCC----ChHHHHHHHHhhhccCCee-ecceEeEEEEEeeeCCeeEEE
Q 030132 128 KWTVIFPKG----KSDTSWLYTVCLDSMSGFV-CLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 128 kw~i~i~k~----~~d~iWe~llLa~ig~~~v-~~~~i~Gi~l~~k~~~~~v~v 176 (182)
+|+|+++|. .+|++|++|||++||+++. .+.+|||++|++|.+.++|+|
T Consensus 78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsI 131 (189)
T 3m94_A 78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSL 131 (189)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEE
T ss_pred EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEE
Confidence 999999885 4699999999999999984 688999999999999998876
No 8
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=9.2e-45 Score=308.49 Aligned_cols=129 Identities=29% Similarity=0.617 Sum_probs=119.4
Q ss_pred CCCCCCCCccceEEEEeCCCCcccccchhhhcceeeeeccHHHHHHhccccCCCCCCCCCceeeeecCCCccCCCCCCCC
Q 030132 45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA 124 (182)
Q Consensus 45 ~~~~~hpL~~~WtfW~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~ly~~l~~ps~L~~~~~~~lFK~GIkP~WEDp~N~ 124 (182)
.....|||+++|||||+.+. +..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus 65 ~~~~kHpL~~~WtlW~~~~~---~~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~ 141 (248)
T 4axg_A 65 EHLYKHPLMNVWTLWYLEND---RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANK 141 (248)
T ss_dssp -CCCCCEEEEEEEEEEESCS---CCCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTT
T ss_pred ccccCCCCCCeEEEEEeeCC---CccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCC
Confidence 46678999999999999764 356899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCC---hHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEE
Q 030132 125 NGGKWTVIFPKGK---SDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHV 176 (182)
Q Consensus 125 nGGkw~i~i~k~~---~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v 176 (182)
+||+|+|+++|.. +|++|++|||++||+.+..+.+||||+|++|.+...|+|
T Consensus 142 ~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~I 196 (248)
T 4axg_A 142 QGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISI 196 (248)
T ss_dssp TCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEE
T ss_pred CccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEE
Confidence 9999999998754 589999999999999998888999999999999988865
No 9
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=97.58 E-value=3.5e-05 Score=65.37 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=41.1
Q ss_pred CCCCCCcEEEEEcCC-CChHHHHHHHHhhhccCCeeecceEeEEEEEeeeCCeeEEEee
Q 030132 121 PVCANGGKWTVIFPK-GKSDTSWLYTVCLDSMSGFVCLCWFISLILNTKYGFKFVHVLG 178 (182)
Q Consensus 121 p~N~nGGkw~i~i~k-~~~d~iWe~llLa~ig~~~v~~~~i~Gi~l~~k~~~~~v~v~~ 178 (182)
..|..||||+|.+++ ..+|++|++++++++. ..|||..|++|......++|.
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~------g~L~gAKVstr~~~~~~~vIc 173 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVE------GRLQVAKVSPRAKEGGRQVIC 173 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHH------TSCSEEEECCBCSSSCCEEEE
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHh------CceeEEEEecCCCCCCCCEEE
Confidence 468999999999998 7899999999999974 334788999987534444444
No 10
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=40.93 E-value=10 Score=26.06 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.6
Q ss_pred CCCCCCceeeeecCCC
Q 030132 99 SKLAVGADFYCFKNKI 114 (182)
Q Consensus 99 s~L~~~~~~~lFK~GI 114 (182)
-.|..++.+|+||+|=
T Consensus 10 v~LkDGstvyiFKDGK 25 (74)
T 2k0q_A 10 YDLQDGSKVHVFKDGK 25 (74)
T ss_dssp EEBTTSCEEEEETTSC
T ss_pred EecCCCcEEEEEcCCc
Confidence 3578899999999983
No 11
>2av5_A Ribonuclease P protein component 2; hydrolase; 3.15A {Pyrococcus furiosus} SCOP: d.58.59.1
Probab=20.62 E-value=1e+02 Score=22.14 Aligned_cols=42 Identities=2% Similarity=-0.058 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHhhhccCCeeecceEeEEE
Q 030132 123 CANGGKWTVIFPKGKSDTSWLYTVCLDSMSGFVCLCWFISLI 164 (182)
Q Consensus 123 N~nGGkw~i~i~k~~~d~iWe~llLa~ig~~~v~~~~i~Gi~ 164 (182)
|...|.-+||+.++..+.+|--|-|---.++..|.-.+.++.
T Consensus 62 ~~~t~~~IiRc~r~~~~~v~aaLtli~~i~~~~~~~~vl~vS 103 (120)
T 2av5_A 62 DETTQTGIIRSDRNHVYDVIFSLTLVSDINGNKAIIKVLGVS 103 (120)
T ss_dssp ETTTTEEEEEEEGGGHHHHHHHHHTCCEETTEEEEEEEEEEE
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHHHhhCCCEEEEEEEeEEc
Confidence 556788899999999999998777654445666666666554
Done!