Query 030133
Match_columns 182
No_of_seqs 155 out of 1789
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 14:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 2.6E-38 9.1E-43 212.6 22.1 179 1-180 1-179 (187)
2 2x77_A ADP-ribosylation factor 100.0 2.3E-38 7.9E-43 213.2 20.4 181 1-181 3-186 (189)
3 1moz_A ARL1, ADP-ribosylation 100.0 2.4E-38 8.1E-43 212.0 19.0 180 1-180 1-181 (183)
4 1ksh_A ARF-like protein 2; sma 100.0 9.3E-37 3.2E-41 204.8 21.9 176 4-180 5-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 3.2E-37 1.1E-41 208.2 19.6 175 5-179 17-191 (192)
6 1upt_A ARL1, ADP-ribosylation 100.0 8.2E-36 2.8E-40 197.5 23.5 166 15-180 5-170 (171)
7 1fzq_A ADP-ribosylation factor 100.0 2.8E-36 9.5E-41 201.8 20.0 166 15-180 14-179 (181)
8 1r8s_A ADP-ribosylation factor 100.0 4.7E-36 1.6E-40 197.4 20.2 163 18-180 1-163 (164)
9 1m2o_B GTP-binding protein SAR 100.0 3E-35 1E-39 198.2 20.8 164 13-176 19-189 (190)
10 4dkx_A RAS-related protein RAB 100.0 5E-37 1.7E-41 210.0 11.7 159 14-178 10-175 (216)
11 2h17_A ADP-ribosylation factor 100.0 2.5E-35 8.6E-40 197.1 19.2 163 14-176 18-180 (181)
12 1zd9_A ADP-ribosylation factor 100.0 3.3E-35 1.1E-39 197.7 19.5 167 14-180 19-186 (188)
13 4bas_A ADP-ribosylation factor 100.0 5.8E-35 2E-39 197.9 19.4 169 12-180 12-190 (199)
14 1f6b_A SAR1; gtpases, N-termin 100.0 4.7E-35 1.6E-39 198.4 18.9 165 13-177 21-197 (198)
15 2h57_A ADP-ribosylation factor 100.0 3.5E-34 1.2E-38 193.0 19.2 166 14-179 18-187 (190)
16 3o47_A ADP-ribosylation factor 100.0 5.6E-34 1.9E-38 206.4 19.6 167 14-180 162-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 2.1E-32 7.2E-37 208.5 21.1 165 15-179 320-484 (497)
18 3q72_A GTP-binding protein RAD 100.0 2.5E-33 8.4E-38 184.8 12.1 160 16-180 1-165 (166)
19 3t5g_A GTP-binding protein RHE 100.0 8.1E-33 2.8E-37 184.8 12.6 161 15-180 4-170 (181)
20 1ek0_A Protein (GTP-binding pr 100.0 3.6E-33 1.2E-37 184.4 10.6 157 16-178 2-168 (170)
21 2efe_B Small GTP-binding prote 100.0 2E-32 6.8E-37 182.8 13.7 164 11-180 6-176 (181)
22 3ihw_A Centg3; RAS, centaurin, 100.0 2.1E-32 7.3E-37 183.4 13.8 159 13-180 16-181 (184)
23 2nzj_A GTP-binding protein REM 100.0 2.2E-32 7.5E-37 181.6 13.1 160 15-179 2-169 (175)
24 2hxs_A RAB-26, RAS-related pro 100.0 1.3E-32 4.4E-37 183.2 11.9 163 14-181 3-175 (178)
25 1x3s_A RAS-related protein RAB 100.0 1.5E-31 5.1E-36 180.5 17.0 161 15-180 13-179 (195)
26 3oes_A GTPase rhebl1; small GT 100.0 1.1E-32 3.9E-37 187.1 11.4 163 13-180 20-188 (201)
27 1r2q_A RAS-related protein RAB 100.0 1.2E-32 4.1E-37 182.0 11.0 159 15-179 4-169 (170)
28 1z08_A RAS-related protein RAB 100.0 2.5E-32 8.5E-37 180.5 12.5 160 14-179 3-169 (170)
29 1c1y_A RAS-related protein RAP 100.0 1.6E-31 5.5E-36 176.1 16.1 159 16-178 2-166 (167)
30 3kkq_A RAS-related protein M-R 100.0 2.1E-31 7.3E-36 178.2 16.7 161 14-179 15-182 (183)
31 2fn4_A P23, RAS-related protei 100.0 1.7E-32 5.8E-37 183.0 11.3 162 13-179 5-172 (181)
32 2fg5_A RAB-22B, RAS-related pr 100.0 3.1E-31 1.1E-35 178.8 17.4 162 13-180 19-187 (192)
33 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-31 5.2E-36 179.6 15.8 161 15-179 2-166 (189)
34 2hup_A RAS-related protein RAB 100.0 1.9E-31 6.7E-36 181.1 16.4 160 15-180 27-194 (201)
35 1z0f_A RAB14, member RAS oncog 100.0 3.5E-32 1.2E-36 181.1 11.9 160 14-179 12-178 (179)
36 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.7E-31 1.3E-35 176.0 16.8 163 14-180 4-175 (177)
37 2gf9_A RAS-related protein RAB 100.0 7.6E-32 2.6E-36 181.4 13.6 160 14-179 19-185 (189)
38 1g16_A RAS-related protein SEC 100.0 1.1E-31 3.7E-36 177.4 14.1 159 16-180 2-166 (170)
39 1z0j_A RAB-22, RAS-related pro 100.0 6E-32 2.1E-36 178.6 12.7 159 15-179 4-169 (170)
40 2g6b_A RAS-related protein RAB 100.0 5.4E-32 1.9E-36 180.5 12.5 161 14-180 7-175 (180)
41 2fu5_C RAS-related protein RAB 100.0 1.9E-32 6.6E-37 183.3 10.3 159 15-179 6-171 (183)
42 3tw8_B RAS-related protein RAB 100.0 6.3E-32 2.1E-36 180.2 12.7 159 14-179 6-171 (181)
43 3tkl_A RAS-related protein RAB 100.0 8.4E-32 2.9E-36 181.9 13.5 159 15-179 14-179 (196)
44 3bc1_A RAS-related protein RAB 100.0 4.7E-31 1.6E-35 177.9 17.0 162 13-179 7-185 (195)
45 3q85_A GTP-binding protein REM 100.0 4.3E-32 1.5E-36 179.3 11.4 159 17-180 2-168 (169)
46 3reg_A RHO-like small GTPase; 100.0 1.2E-31 4E-36 181.1 13.7 160 14-180 20-189 (194)
47 2bov_A RAla, RAS-related prote 100.0 8.5E-32 2.9E-36 183.2 13.1 165 10-179 7-177 (206)
48 2ew1_A RAS-related protein RAB 100.0 3.4E-32 1.2E-36 184.7 10.9 159 15-179 24-189 (201)
49 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-31 5.3E-36 182.1 14.2 159 15-179 6-171 (206)
50 1u8z_A RAS-related protein RAL 100.0 8E-32 2.7E-36 177.6 12.2 159 16-179 3-167 (168)
51 1kao_A RAP2A; GTP-binding prot 100.0 2E-32 6.7E-37 180.3 9.2 159 16-179 2-166 (167)
52 1z06_A RAS-related protein RAB 100.0 2.6E-32 9E-37 183.6 9.6 162 13-179 16-188 (189)
53 3cbq_A GTP-binding protein REM 100.0 5.2E-32 1.8E-36 183.0 11.1 163 13-180 19-189 (195)
54 2a5j_A RAS-related protein RAB 100.0 6.7E-32 2.3E-36 181.9 11.5 160 14-179 18-184 (191)
55 2oil_A CATX-8, RAS-related pro 100.0 1.5E-31 5.2E-36 180.4 13.0 159 15-179 23-188 (193)
56 2atv_A RERG, RAS-like estrogen 100.0 4.4E-31 1.5E-35 178.6 15.3 167 7-179 18-191 (196)
57 2bme_A RAB4A, RAS-related prot 100.0 1.3E-31 4.4E-36 179.7 12.4 159 15-179 8-173 (186)
58 1z2a_A RAS-related protein RAB 100.0 3.5E-31 1.2E-35 174.6 14.2 158 15-179 3-167 (168)
59 3cph_A RAS-related protein SEC 100.0 5.7E-31 2E-35 180.1 15.6 161 13-179 16-182 (213)
60 4djt_A GTP-binding nuclear pro 100.0 1.5E-31 5.1E-36 183.7 12.4 161 14-180 8-176 (218)
61 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-31 6.1E-36 181.4 12.7 158 15-178 6-170 (203)
62 1vg8_A RAS-related protein RAB 100.0 9.3E-31 3.2E-35 178.3 16.3 162 14-179 5-175 (207)
63 3q3j_B RHO-related GTP-binding 100.0 5.8E-32 2E-36 185.3 10.3 161 13-180 23-204 (214)
64 2a9k_A RAS-related protein RAL 100.0 8.5E-31 2.9E-35 175.6 15.8 161 14-179 15-181 (187)
65 2iwr_A Centaurin gamma 1; ANK 100.0 3E-31 1E-35 176.7 13.4 156 15-179 5-169 (178)
66 3clv_A RAB5 protein, putative; 100.0 3.7E-30 1.3E-34 174.9 19.0 157 15-179 5-204 (208)
67 1ky3_A GTP-binding protein YPT 100.0 3.5E-31 1.2E-35 176.8 13.3 163 14-180 5-179 (182)
68 3dz8_A RAS-related protein RAB 100.0 1.8E-32 6.3E-37 184.7 6.7 159 15-179 21-186 (191)
69 2p5s_A RAS and EF-hand domain 100.0 5.4E-31 1.8E-35 178.6 13.9 162 12-179 23-197 (199)
70 3t1o_A Gliding protein MGLA; G 100.0 6.9E-31 2.4E-35 177.5 14.4 160 13-179 10-192 (198)
71 3cpj_B GTP-binding protein YPT 100.0 3.3E-31 1.1E-35 182.6 13.0 160 15-180 11-177 (223)
72 2atx_A Small GTP binding prote 100.0 3.4E-30 1.2E-34 173.9 17.7 160 13-179 14-193 (194)
73 2ce2_X GTPase HRAS; signaling 100.0 1.7E-30 5.7E-35 170.8 15.7 158 17-179 3-165 (166)
74 3c5c_A RAS-like protein 12; GD 100.0 1.2E-31 4.3E-36 180.1 10.3 160 14-179 18-186 (187)
75 2y8e_A RAB-protein 6, GH09086P 100.0 7.8E-32 2.7E-36 179.5 9.2 159 15-179 12-177 (179)
76 2fh5_B SR-beta, signal recogni 100.0 1.3E-30 4.5E-35 178.5 15.4 162 15-176 5-213 (214)
77 2il1_A RAB12; G-protein, GDP, 100.0 1E-30 3.5E-35 176.3 14.6 161 14-179 23-190 (192)
78 3con_A GTPase NRAS; structural 100.0 2.3E-30 7.9E-35 174.2 16.0 162 14-180 18-184 (190)
79 2o52_A RAS-related protein RAB 100.0 1.2E-31 4.2E-36 181.9 9.7 159 15-179 23-188 (200)
80 2erx_A GTP-binding protein DI- 100.0 8.8E-32 3E-36 178.1 8.8 160 16-180 2-168 (172)
81 2f7s_A C25KG, RAS-related prot 100.0 6.6E-32 2.3E-36 185.3 8.1 160 15-179 23-199 (217)
82 2gco_A H9, RHO-related GTP-bin 100.0 1.4E-30 4.8E-35 176.8 13.7 163 14-178 22-199 (201)
83 3gj0_A GTP-binding nuclear pro 100.0 3.2E-31 1.1E-35 182.4 10.6 162 12-180 10-176 (221)
84 2g3y_A GTP-binding protein GEM 100.0 6.1E-31 2.1E-35 179.4 11.7 160 15-179 35-203 (211)
85 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.6E-30 5.4E-35 174.2 13.4 165 15-181 3-182 (186)
86 4gzl_A RAS-related C3 botulinu 100.0 3E-30 1E-34 175.6 14.9 164 12-177 25-203 (204)
87 3llu_A RAS-related GTP-binding 100.0 1.1E-30 3.9E-35 176.6 12.4 164 11-177 14-195 (196)
88 2j0v_A RAC-like GTP-binding pr 100.0 1.8E-30 6E-35 177.6 13.4 159 15-180 7-181 (212)
89 2gf0_A GTP-binding protein DI- 100.0 1.7E-30 5.8E-35 175.9 13.1 162 14-180 5-172 (199)
90 2q3h_A RAS homolog gene family 100.0 6.8E-30 2.3E-34 173.3 15.7 160 13-179 16-195 (201)
91 2fv8_A H6, RHO-related GTP-bin 100.0 1.3E-29 4.4E-34 172.8 17.1 164 15-180 23-201 (207)
92 3bwd_D RAC-like GTP-binding pr 100.0 5.8E-31 2E-35 175.8 10.2 159 14-179 5-181 (182)
93 2lkc_A Translation initiation 100.0 2.2E-29 7.4E-34 167.6 17.6 162 13-180 4-172 (178)
94 2yc2_C IFT27, small RAB-relate 100.0 1.2E-30 4.2E-35 177.7 11.4 160 15-179 18-192 (208)
95 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-29 3.6E-34 170.2 15.5 159 15-179 5-183 (184)
96 2j1l_A RHO-related GTP-binding 100.0 1.7E-30 5.8E-35 178.0 11.7 164 15-180 32-210 (214)
97 3l0i_B RAS-related protein RAB 100.0 6E-32 2.1E-36 183.3 3.2 162 15-180 31-197 (199)
98 1gwn_A RHO-related GTP-binding 100.0 2.5E-29 8.4E-34 171.2 15.4 160 14-179 25-204 (205)
99 2cjw_A GTP-binding protein GEM 100.0 8.3E-30 2.9E-34 171.8 11.7 160 14-178 3-171 (192)
100 2zej_A Dardarin, leucine-rich 100.0 3.6E-30 1.2E-34 172.5 8.6 162 17-180 2-179 (184)
101 2qu8_A Putative nucleolar GTP- 100.0 2.5E-28 8.4E-33 168.8 15.7 162 15-179 27-205 (228)
102 1svi_A GTP-binding protein YSX 100.0 5.1E-29 1.7E-33 168.2 11.1 162 11-178 17-194 (195)
103 2gj8_A MNME, tRNA modification 100.0 2.1E-28 7.2E-33 162.2 13.7 153 15-179 2-166 (172)
104 3th5_A RAS-related C3 botulinu 99.9 5.7E-31 2E-35 179.1 0.0 164 12-177 25-203 (204)
105 3r7w_B Gtpase2, GTP-binding pr 100.0 1.2E-28 4.1E-33 176.0 11.8 157 19-179 1-174 (331)
106 2dyk_A GTP-binding protein; GT 100.0 3.5E-28 1.2E-32 159.2 13.1 148 18-178 2-161 (161)
107 3pqc_A Probable GTP-binding pr 100.0 6.5E-29 2.2E-33 167.5 9.6 164 11-179 17-194 (195)
108 3r7w_A Gtpase1, GTP-binding pr 100.0 4.2E-28 1.4E-32 174.2 14.1 162 16-178 2-180 (307)
109 3iev_A GTP-binding protein ERA 100.0 1.9E-27 6.5E-32 170.9 16.1 162 13-180 6-183 (308)
110 2wji_A Ferrous iron transport 100.0 6.9E-27 2.4E-31 153.9 14.9 147 17-178 3-164 (165)
111 2wkq_A NPH1-1, RAS-related C3 100.0 8.5E-27 2.9E-31 169.2 16.7 164 15-180 153-331 (332)
112 4dhe_A Probable GTP-binding pr 99.9 4E-28 1.4E-32 167.1 8.4 166 10-180 22-212 (223)
113 1wf3_A GTP-binding protein; GT 99.9 4.5E-27 1.5E-31 168.2 14.0 157 16-180 6-174 (301)
114 2cxx_A Probable GTP-binding pr 99.9 2.1E-28 7.3E-33 164.4 6.7 160 18-180 2-185 (190)
115 2f9l_A RAB11B, member RAS onco 99.9 4.2E-27 1.4E-31 159.4 12.5 158 15-178 3-167 (199)
116 3c5h_A Glucocorticoid receptor 99.9 1.4E-27 4.7E-32 167.5 9.5 161 14-178 16-254 (255)
117 3a1s_A Iron(II) transport prot 99.9 8E-27 2.7E-31 163.7 11.5 149 15-178 3-166 (258)
118 1oix_A RAS-related protein RAB 99.9 5.3E-26 1.8E-30 153.1 12.8 157 15-177 27-190 (191)
119 3iby_A Ferrous iron transport 99.9 2.2E-27 7.5E-32 166.3 6.3 144 18-176 2-164 (256)
120 2hjg_A GTP-binding protein ENG 99.9 1.1E-26 3.8E-31 174.2 10.3 160 15-179 173-349 (436)
121 2wjg_A FEOB, ferrous iron tran 99.9 9.1E-26 3.1E-30 151.4 13.6 151 15-180 5-170 (188)
122 3i8s_A Ferrous iron transport 99.9 1.6E-27 5.3E-32 168.8 4.9 149 16-179 2-169 (274)
123 3gee_A MNME, tRNA modification 99.9 9.4E-26 3.2E-30 169.9 12.8 155 15-178 231-397 (476)
124 3b1v_A Ferrous iron uptake tra 99.9 7.8E-27 2.7E-31 164.6 6.3 148 16-178 2-163 (272)
125 3sjy_A Translation initiation 99.9 1.5E-25 5.1E-30 166.6 12.9 165 13-180 4-193 (403)
126 4dcu_A GTP-binding protein ENG 99.9 6.8E-26 2.3E-30 170.8 10.2 160 15-179 193-369 (456)
127 1mky_A Probable GTP-binding pr 99.9 4.4E-25 1.5E-29 165.6 13.3 151 18-179 2-166 (439)
128 3qq5_A Small GTP-binding prote 99.9 5.6E-26 1.9E-30 168.6 7.8 157 11-179 28-196 (423)
129 1xzp_A Probable tRNA modificat 99.9 4.5E-25 1.5E-29 166.3 12.8 150 16-178 242-404 (482)
130 3dpu_A RAB family protein; roc 99.9 6.2E-26 2.1E-30 174.1 8.1 157 14-180 38-209 (535)
131 3k53_A Ferrous iron transport 99.9 4.3E-24 1.5E-28 151.1 16.8 149 17-179 3-166 (271)
132 2e87_A Hypothetical protein PH 99.9 3E-24 1E-28 157.3 16.4 158 15-179 165-336 (357)
133 1nrj_B SR-beta, signal recogni 99.9 1.9E-26 6.4E-31 158.2 3.8 119 12-135 7-137 (218)
134 1ega_A Protein (GTP-binding pr 99.9 3.2E-24 1.1E-28 153.6 14.6 157 16-180 7-176 (301)
135 1lnz_A SPO0B-associated GTP-bi 99.9 4.7E-25 1.6E-29 159.8 10.0 159 18-181 159-332 (342)
136 1cip_A Protein (guanine nucleo 99.9 1.6E-24 5.4E-29 157.6 12.5 133 47-179 179-344 (353)
137 1mky_A Probable GTP-binding pr 99.9 3E-24 1E-28 161.1 13.9 159 16-179 179-355 (439)
138 1s0u_A EIF-2-gamma, translatio 99.9 4.6E-24 1.6E-28 158.8 14.7 162 14-180 5-199 (408)
139 3ohm_A Guanine nucleotide-bind 99.9 9.8E-24 3.3E-28 151.4 15.8 135 46-180 152-319 (327)
140 3geh_A MNME, tRNA modification 99.9 1.7E-24 5.9E-29 162.5 12.4 151 15-179 222-384 (462)
141 2hjg_A GTP-binding protein ENG 99.9 5.2E-25 1.8E-29 165.1 8.8 150 18-179 4-165 (436)
142 1wb1_A Translation elongation 99.9 1.5E-24 5E-29 164.1 10.3 158 16-178 18-188 (482)
143 1kk1_A EIF2gamma; initiation o 99.9 3.7E-24 1.3E-28 159.4 12.1 163 13-180 6-201 (410)
144 3tr5_A RF-3, peptide chain rel 99.9 1.6E-23 5.6E-28 159.5 15.5 114 15-133 11-149 (528)
145 3izy_P Translation initiation 99.9 3.7E-25 1.3E-29 168.1 5.4 159 15-178 2-167 (537)
146 2qtf_A Protein HFLX, GTP-bindi 99.9 1.8E-23 6.1E-28 152.9 13.9 160 17-179 178-354 (364)
147 1zcb_A G alpha I/13; GTP-bindi 99.9 2.3E-23 7.8E-28 152.0 14.2 131 49-179 189-353 (362)
148 3j2k_7 ERF3, eukaryotic polype 99.9 1.3E-23 4.4E-28 157.5 12.8 154 14-171 14-217 (439)
149 4fid_A G protein alpha subunit 99.9 2E-23 7E-28 150.3 12.8 132 47-178 147-327 (340)
150 3lxw_A GTPase IMAP family memb 99.9 4.9E-23 1.7E-27 143.7 14.4 166 13-180 17-209 (247)
151 2xtp_A GTPase IMAP family memb 99.9 1.7E-23 5.7E-28 147.2 11.5 165 13-180 18-209 (260)
152 2elf_A Protein translation elo 99.9 1.4E-23 5E-28 153.8 11.4 148 19-178 23-179 (370)
153 1zun_B Sulfate adenylate trans 99.9 6.7E-23 2.3E-27 153.6 14.7 159 7-169 14-214 (434)
154 2c78_A Elongation factor TU-A; 99.9 2E-23 6.9E-28 155.2 11.3 162 14-180 8-213 (405)
155 2ged_A SR-beta, signal recogni 99.9 7.7E-24 2.6E-28 142.5 8.2 125 14-143 45-181 (193)
156 2ywe_A GTP-binding protein LEP 99.9 1.2E-22 4.1E-27 156.2 15.2 159 15-180 4-185 (600)
157 3cb4_D GTP-binding protein LEP 99.9 6.6E-23 2.3E-27 157.9 12.9 158 16-180 3-183 (599)
158 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 158.6 8.5 152 16-179 22-185 (456)
159 3p26_A Elongation factor 1 alp 99.9 3.6E-23 1.2E-27 156.9 11.0 153 14-168 30-227 (483)
160 1d2e_A Elongation factor TU (E 99.9 2.9E-23 9.9E-28 153.9 9.9 160 16-180 2-196 (397)
161 1g7s_A Translation initiation 99.9 9E-23 3.1E-27 157.2 12.4 158 16-178 4-217 (594)
162 2xtz_A Guanine nucleotide-bind 99.9 3.3E-23 1.1E-27 150.6 9.3 120 60-179 182-345 (354)
163 1zo1_I IF2, translation initia 99.9 5.8E-24 2E-28 160.3 4.7 155 15-175 2-163 (501)
164 3izq_1 HBS1P, elongation facto 99.9 5.6E-23 1.9E-27 159.1 10.2 152 15-169 165-362 (611)
165 1jny_A EF-1-alpha, elongation 99.9 3.3E-23 1.1E-27 155.3 8.2 154 15-169 4-203 (435)
166 3t5d_A Septin-7; GTP-binding p 99.9 3.5E-23 1.2E-27 146.6 7.7 158 15-178 6-203 (274)
167 3lxx_A GTPase IMAP family memb 99.9 5.3E-22 1.8E-26 137.9 13.0 161 13-180 25-215 (239)
168 2aka_B Dynamin-1; fusion prote 99.9 9.5E-23 3.3E-27 146.0 9.3 156 15-176 24-250 (299)
169 1azs_C GS-alpha; complex (lyas 99.9 1.9E-22 6.4E-27 148.3 9.9 128 52-179 208-385 (402)
170 1r5b_A Eukaryotic peptide chai 99.9 3.1E-23 1.1E-27 156.5 4.6 154 13-170 39-243 (467)
171 3mca_A HBS1, elongation factor 99.9 4.1E-24 1.4E-28 165.0 -0.3 162 13-178 173-396 (592)
172 2h5e_A Peptide chain release f 99.9 5.3E-21 1.8E-25 145.9 16.4 114 15-133 11-149 (529)
173 1f60_A Elongation factor EEF1A 99.9 8.1E-22 2.8E-26 148.5 10.3 150 15-168 5-201 (458)
174 3avx_A Elongation factor TS, e 99.9 7.5E-22 2.6E-26 159.2 10.4 161 14-179 293-486 (1289)
175 1dar_A EF-G, elongation factor 99.9 8E-21 2.7E-25 149.1 14.9 114 15-133 10-144 (691)
176 1pui_A ENGB, probable GTP-bind 99.9 4.6E-21 1.6E-25 130.6 10.1 162 12-179 21-199 (210)
177 2xex_A Elongation factor G; GT 99.8 3.7E-20 1.3E-24 145.4 16.0 116 13-133 6-142 (693)
178 2dy1_A Elongation factor G; tr 99.8 5E-20 1.7E-24 144.2 15.7 113 14-131 6-139 (665)
179 1jwy_B Dynamin A GTPase domain 99.8 1E-20 3.4E-25 136.5 10.1 161 15-180 22-263 (315)
180 2j69_A Bacterial dynamin-like 99.8 1.3E-20 4.6E-25 148.0 10.8 161 15-179 67-325 (695)
181 3def_A T7I23.11 protein; chlor 99.8 6.4E-20 2.2E-24 129.0 12.4 117 15-131 34-164 (262)
182 2rdo_7 EF-G, elongation factor 99.8 2.4E-19 8.3E-24 141.0 16.9 115 14-133 7-149 (704)
183 2qag_A Septin-2, protein NEDD5 99.8 3.8E-21 1.3E-25 140.7 5.5 157 15-178 35-232 (361)
184 1udx_A The GTP-binding protein 99.8 2.3E-19 7.7E-24 132.9 14.5 157 18-180 158-326 (416)
185 3vqt_A RF-3, peptide chain rel 99.8 2.3E-18 7.7E-23 132.0 15.4 114 15-133 29-167 (548)
186 1h65_A Chloroplast outer envel 99.8 2.1E-18 7.3E-23 121.8 13.9 118 15-133 37-169 (270)
187 2x2e_A Dynamin-1; nitration, h 99.8 8.9E-20 3.1E-24 133.4 6.2 155 15-175 29-254 (353)
188 1wxq_A GTP-binding protein; st 99.8 2.8E-20 9.5E-25 137.5 3.2 80 18-97 1-114 (397)
189 3t34_A Dynamin-related protein 99.8 1.3E-19 4.6E-24 132.8 6.2 150 17-172 34-254 (360)
190 3p32_A Probable GTPase RV1496/ 99.8 2.8E-19 9.5E-24 130.8 6.1 154 14-179 76-284 (355)
191 1n0u_A EF-2, elongation factor 99.7 2.1E-18 7.2E-23 138.0 7.1 120 5-131 9-163 (842)
192 2www_A Methylmalonic aciduria 99.7 1.9E-17 6.5E-22 120.7 11.5 152 15-178 72-278 (349)
193 2qpt_A EH domain-containing pr 99.7 3.5E-18 1.2E-22 131.1 6.9 115 15-133 63-233 (550)
194 3j25_A Tetracycline resistance 99.7 7E-18 2.4E-22 131.6 6.9 158 18-180 3-240 (638)
195 3zvr_A Dynamin-1; hydrolase, D 99.7 4.8E-17 1.6E-21 127.7 11.5 155 16-175 50-274 (772)
196 2qnr_A Septin-2, protein NEDD5 99.7 4.5E-18 1.5E-22 121.7 5.3 159 14-179 15-214 (301)
197 2wsm_A Hydrogenase expression/ 99.7 1E-17 3.5E-22 114.9 6.4 150 15-179 28-214 (221)
198 1u0l_A Probable GTPase ENGC; p 99.7 3.9E-18 1.3E-22 122.1 4.3 134 32-175 32-169 (301)
199 2qag_C Septin-7; cell cycle, c 99.7 2.1E-17 7.1E-22 122.6 7.3 154 15-178 29-226 (418)
200 1yrb_A ATP(GTP)binding protein 99.7 4.5E-17 1.5E-21 114.4 8.1 165 15-180 12-258 (262)
201 4fn5_A EF-G 1, elongation fact 99.7 7.8E-16 2.7E-20 121.5 15.7 116 13-133 9-152 (709)
202 4a9a_A Ribosome-interacting GT 99.7 1.7E-16 5.7E-21 116.0 10.8 112 17-130 72-194 (376)
203 1jal_A YCHF protein; nucleotid 99.7 2E-15 6.8E-20 109.8 15.9 80 17-96 2-108 (363)
204 2p67_A LAO/AO transport system 99.7 1.8E-17 6.1E-22 120.6 5.0 153 14-178 53-260 (341)
205 3l82_B F-box only protein 4; T 99.7 4.7E-16 1.6E-20 103.6 8.1 174 5-180 4-224 (227)
206 2hf9_A Probable hydrogenase ni 99.6 1.1E-15 3.7E-20 105.1 7.3 151 15-180 36-225 (226)
207 2qm8_A GTPase/ATPase; G protei 99.6 2E-15 6.9E-20 109.5 7.2 153 14-178 52-260 (337)
208 2dby_A GTP-binding protein; GD 99.6 1.6E-14 5.6E-19 105.5 11.7 79 18-96 2-111 (368)
209 3l2o_B F-box only protein 4; s 99.6 8.2E-15 2.8E-19 102.2 8.0 111 68-180 194-309 (312)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 2.1E-13 7.3E-18 100.1 6.1 84 15-98 20-130 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 2.4E-12 8.4E-17 92.1 7.8 99 71-175 66-165 (302)
212 1tq4_A IIGP1, interferon-induc 99.2 9E-11 3.1E-15 86.9 10.9 159 16-181 68-255 (413)
213 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 8.9E-11 3E-15 86.4 9.9 82 15-96 18-127 (392)
214 3ec1_A YQEH GTPase; atnos1, at 99.2 3.6E-12 1.2E-16 93.6 2.5 111 17-133 162-289 (369)
215 2j37_W Signal recognition part 99.2 2.1E-11 7E-16 92.5 6.7 153 16-176 100-310 (504)
216 3h2y_A GTPase family protein; 99.1 2.9E-11 9.8E-16 88.7 3.8 118 17-140 160-295 (368)
217 2qag_B Septin-6, protein NEDD5 99.1 2.5E-10 8.6E-15 84.6 8.4 138 16-160 41-217 (427)
218 3sop_A Neuronal-specific septi 99.1 6.6E-10 2.3E-14 78.2 8.1 111 17-133 2-155 (270)
219 3h2y_A GTPase family protein; 99.0 2.5E-10 8.6E-15 83.7 3.6 101 70-177 55-158 (368)
220 1puj_A YLQF, conserved hypothe 98.9 1.5E-09 5.2E-14 76.8 6.2 58 14-72 117-176 (282)
221 3ec1_A YQEH GTPase; atnos1, at 98.9 5.4E-10 1.9E-14 82.0 3.7 101 70-178 57-161 (369)
222 1puj_A YLQF, conserved hypothe 98.9 1.1E-09 3.8E-14 77.5 4.4 102 65-178 3-105 (282)
223 3cnl_A YLQF, putative uncharac 98.8 8E-10 2.7E-14 77.4 2.1 56 18-74 100-157 (262)
224 1f5n_A Interferon-induced guan 98.7 3.1E-08 1.1E-12 76.5 6.7 60 14-73 35-103 (592)
225 2v3c_C SRP54, signal recogniti 98.5 6.7E-08 2.3E-12 72.3 4.8 108 17-132 99-252 (432)
226 3dm5_A SRP54, signal recogniti 98.5 5.2E-07 1.8E-11 67.4 9.4 111 16-133 99-254 (443)
227 3szr_A Interferon-induced GTP- 98.5 1.1E-07 3.8E-12 74.1 5.3 23 19-41 47-69 (608)
228 3cnl_A YLQF, putative uncharac 98.4 2.3E-08 7.8E-13 70.0 0.1 93 68-175 4-97 (262)
229 1t9h_A YLOQ, probable GTPase E 98.3 4.6E-07 1.6E-11 64.7 3.0 90 78-172 80-170 (307)
230 3kl4_A SRP54, signal recogniti 98.2 1.6E-06 5.6E-11 64.6 5.5 110 16-132 96-252 (433)
231 1j8m_F SRP54, signal recogniti 98.2 5.5E-06 1.9E-10 59.0 7.6 108 17-132 98-253 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.1 7.3E-06 2.5E-10 59.7 7.2 86 81-173 127-213 (358)
233 2xxa_A Signal recognition part 98.1 2.2E-05 7.4E-10 58.8 8.9 110 16-133 99-255 (433)
234 3q5d_A Atlastin-1; G protein, 98.0 7.6E-06 2.6E-10 61.3 5.3 27 14-40 64-90 (447)
235 1bif_A 6-phosphofructo-2-kinas 97.9 6.4E-07 2.2E-11 67.9 -1.4 85 13-97 35-133 (469)
236 1ye8_A Protein THEP1, hypothet 97.8 1.6E-05 5.6E-10 52.3 3.2 22 19-40 2-23 (178)
237 1kgd_A CASK, peripheral plasma 97.7 2.6E-05 8.8E-10 51.3 3.0 23 18-40 6-28 (180)
238 3c8u_A Fructokinase; YP_612366 97.6 3.6E-05 1.2E-09 51.8 3.6 27 14-40 19-45 (208)
239 1lvg_A Guanylate kinase, GMP k 97.6 2.9E-05 9.9E-10 52.0 3.0 22 18-39 5-26 (198)
240 3ec2_A DNA replication protein 97.6 3.4E-05 1.2E-09 50.6 3.1 33 8-40 29-61 (180)
241 1zp6_A Hypothetical protein AT 97.6 5.2E-05 1.8E-09 50.2 3.9 25 16-40 8-32 (191)
242 3tr0_A Guanylate kinase, GMP k 97.6 4.4E-05 1.5E-09 51.1 3.0 23 18-40 8-30 (205)
243 3a00_A Guanylate kinase, GMP k 97.5 4.4E-05 1.5E-09 50.4 2.9 22 20-41 4-25 (186)
244 2ffh_A Protein (FFH); SRP54, s 97.5 0.00037 1.3E-08 52.0 8.0 67 59-132 179-251 (425)
245 1znw_A Guanylate kinase, GMP k 97.5 4.6E-05 1.6E-09 51.3 2.9 27 15-41 18-44 (207)
246 4dzz_A Plasmid partitioning pr 97.5 0.00044 1.5E-08 46.1 7.7 68 60-131 75-143 (206)
247 1z6g_A Guanylate kinase; struc 97.5 5.4E-05 1.9E-09 51.4 2.9 26 16-41 22-47 (218)
248 4gp7_A Metallophosphoesterase; 97.5 5.4E-05 1.8E-09 49.4 2.8 21 18-38 10-30 (171)
249 1s96_A Guanylate kinase, GMP k 97.5 5.8E-05 2E-09 51.3 3.0 26 16-41 15-40 (219)
250 2bbw_A Adenylate kinase 4, AK4 97.5 7.9E-05 2.7E-09 51.5 3.7 23 16-38 26-48 (246)
251 2rcn_A Probable GTPase ENGC; Y 97.5 7.9E-05 2.7E-09 54.3 3.4 25 18-42 216-240 (358)
252 3tif_A Uncharacterized ABC tra 97.5 7.1E-05 2.4E-09 51.5 3.0 25 17-41 31-55 (235)
253 3ney_A 55 kDa erythrocyte memb 97.5 0.00011 3.7E-09 49.1 3.8 27 15-41 17-43 (197)
254 3asz_A Uridine kinase; cytidin 97.4 9.2E-05 3.1E-09 49.8 3.2 26 15-40 4-29 (211)
255 1htw_A HI0065; nucleotide-bind 97.4 9E-05 3.1E-09 47.7 2.9 27 15-41 31-57 (158)
256 2pcj_A ABC transporter, lipopr 97.4 8.4E-05 2.9E-09 50.7 2.9 23 19-41 32-54 (224)
257 1jbk_A CLPB protein; beta barr 97.4 0.00023 7.8E-09 46.7 4.8 34 7-40 33-66 (195)
258 2onk_A Molybdate/tungstate ABC 97.4 0.00011 3.6E-09 50.8 3.2 24 18-41 25-48 (240)
259 3tau_A Guanylate kinase, GMP k 97.4 0.00014 4.7E-09 49.0 3.7 26 16-41 7-32 (208)
260 2j41_A Guanylate kinase; GMP, 97.4 0.00013 4.5E-09 48.8 3.5 25 17-41 6-30 (207)
261 3gfo_A Cobalt import ATP-bindi 97.4 0.00011 3.7E-09 51.8 3.1 24 18-41 35-58 (275)
262 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.7E-09 47.8 3.0 23 18-40 5-27 (173)
263 1ex7_A Guanylate kinase; subst 97.4 0.00012 4.1E-09 48.4 3.1 21 20-40 4-24 (186)
264 1b0u_A Histidine permease; ABC 97.4 0.00011 3.8E-09 51.3 3.1 26 16-41 31-56 (262)
265 1sgw_A Putative ABC transporte 97.4 0.00012 4E-09 49.6 3.1 23 19-41 37-59 (214)
266 2bdt_A BH3686; alpha-beta prot 97.3 0.00011 3.9E-09 48.5 2.9 21 19-39 4-24 (189)
267 4g1u_C Hemin import ATP-bindin 97.3 0.00012 4.1E-09 51.3 3.1 25 17-41 37-61 (266)
268 2cbz_A Multidrug resistance-as 97.3 0.00013 4.6E-09 50.1 3.3 25 17-41 31-55 (237)
269 1g6h_A High-affinity branched- 97.3 0.00012 4.2E-09 51.0 3.0 24 18-41 34-57 (257)
270 1mv5_A LMRA, multidrug resista 97.3 0.00015 5.1E-09 50.1 3.3 26 16-41 27-52 (243)
271 4eun_A Thermoresistant glucoki 97.3 0.00016 5.4E-09 48.3 3.4 24 16-39 28-51 (200)
272 2ff7_A Alpha-hemolysin translo 97.3 0.00015 5E-09 50.3 3.3 24 18-41 36-59 (247)
273 2pze_A Cystic fibrosis transme 97.3 0.00014 4.6E-09 49.8 3.1 24 18-41 35-58 (229)
274 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.9E-09 48.7 3.1 25 16-40 11-35 (204)
275 3tqc_A Pantothenate kinase; bi 97.3 0.00023 8E-09 51.1 4.3 30 9-38 84-113 (321)
276 2olj_A Amino acid ABC transpor 97.3 0.00014 4.8E-09 50.8 3.1 25 17-41 50-74 (263)
277 2cdn_A Adenylate kinase; phosp 97.3 0.00021 7.1E-09 47.7 3.9 27 13-39 16-42 (201)
278 3lw7_A Adenylate kinase relate 97.3 0.00014 4.9E-09 47.1 3.0 20 18-37 2-21 (179)
279 2i3b_A HCR-ntpase, human cance 97.3 0.00013 4.4E-09 48.4 2.8 22 19-40 3-24 (189)
280 1ji0_A ABC transporter; ATP bi 97.3 0.00014 4.9E-09 50.1 3.0 24 18-41 33-56 (240)
281 1t9h_A YLOQ, probable GTPase E 97.3 4.2E-05 1.4E-09 54.6 0.4 25 17-41 173-197 (307)
282 1vpl_A ABC transporter, ATP-bi 97.3 0.00015 5E-09 50.5 3.1 25 17-41 41-65 (256)
283 3b85_A Phosphate starvation-in 97.3 0.00011 3.9E-09 49.5 2.4 23 18-40 23-45 (208)
284 2qi9_C Vitamin B12 import ATP- 97.3 0.00015 5.2E-09 50.2 3.1 24 18-41 27-50 (249)
285 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00016 5.4E-09 50.2 3.2 23 18-40 30-52 (250)
286 3kb2_A SPBC2 prophage-derived 97.3 0.00017 5.9E-09 46.7 3.2 22 19-40 3-24 (173)
287 1rz3_A Hypothetical protein rb 97.3 0.00024 8.1E-09 47.5 3.9 26 14-39 19-44 (201)
288 2zu0_C Probable ATP-dependent 97.3 0.00017 5.7E-09 50.6 3.2 25 16-40 45-69 (267)
289 1knq_A Gluconate kinase; ALFA/ 97.3 0.00021 7.3E-09 46.5 3.6 24 16-39 7-30 (175)
290 2v9p_A Replication protein E1; 97.3 0.00018 6.2E-09 51.3 3.4 25 15-39 124-148 (305)
291 1u0l_A Probable GTPase ENGC; p 97.3 0.00018 6.3E-09 51.3 3.5 25 18-42 170-194 (301)
292 2ghi_A Transport protein; mult 97.3 0.00018 6E-09 50.3 3.3 25 17-41 46-70 (260)
293 1sq5_A Pantothenate kinase; P- 97.3 0.00027 9.4E-09 50.5 4.3 25 15-39 78-102 (308)
294 1cke_A CK, MSSA, protein (cyti 97.3 0.00021 7.1E-09 48.6 3.6 23 17-39 5-27 (227)
295 3aez_A Pantothenate kinase; tr 97.3 0.00019 6.6E-09 51.4 3.5 26 14-39 87-112 (312)
296 2eyu_A Twitching motility prot 97.3 0.00016 5.4E-09 50.5 2.9 26 15-40 23-48 (261)
297 1ly1_A Polynucleotide kinase; 97.3 0.00019 6.4E-09 46.9 3.1 22 18-39 3-24 (181)
298 2ixe_A Antigen peptide transpo 97.2 0.00017 5.8E-09 50.7 3.0 25 17-41 45-69 (271)
299 2ihy_A ABC transporter, ATP-bi 97.2 0.00019 6.6E-09 50.6 3.3 25 17-41 47-71 (279)
300 2nq2_C Hypothetical ABC transp 97.2 0.00018 6.1E-09 50.0 3.0 23 19-41 33-55 (253)
301 3tlx_A Adenylate kinase 2; str 97.2 0.00026 8.8E-09 48.9 3.8 25 15-39 27-51 (243)
302 2p65_A Hypothetical protein PF 97.2 0.0003 1E-08 45.9 4.0 34 7-40 33-66 (187)
303 2if2_A Dephospho-COA kinase; a 97.2 0.0002 6.8E-09 47.9 3.1 21 19-39 3-23 (204)
304 2yz2_A Putative ABC transporte 97.2 0.00019 6.5E-09 50.3 3.0 25 17-41 33-57 (266)
305 1np6_A Molybdopterin-guanine d 97.2 0.0002 6.9E-09 46.8 3.0 23 18-40 7-29 (174)
306 1y63_A LMAJ004144AAA protein; 97.2 0.00031 1E-08 46.3 3.8 26 15-40 8-33 (184)
307 2jeo_A Uridine-cytidine kinase 97.2 0.00025 8.6E-09 48.9 3.5 25 15-39 23-47 (245)
308 1jjv_A Dephospho-COA kinase; P 97.2 0.00025 8.5E-09 47.5 3.4 22 18-39 3-24 (206)
309 2yv5_A YJEQ protein; hydrolase 97.2 0.00021 7.1E-09 51.0 3.1 24 17-41 165-188 (302)
310 4a74_A DNA repair and recombin 97.2 0.00019 6.5E-09 48.8 2.8 24 17-40 25-48 (231)
311 2qt1_A Nicotinamide riboside k 97.2 0.00028 9.6E-09 47.3 3.6 26 15-40 19-44 (207)
312 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.6E-09 47.1 3.5 26 15-40 23-48 (200)
313 2ehv_A Hypothetical protein PH 97.2 0.00023 7.8E-09 49.0 3.1 23 16-38 29-51 (251)
314 3fb4_A Adenylate kinase; psych 97.2 0.00025 8.6E-09 47.8 3.3 21 19-39 2-22 (216)
315 3t61_A Gluconokinase; PSI-biol 97.2 0.00022 7.4E-09 47.7 2.9 23 17-39 18-40 (202)
316 2pjz_A Hypothetical protein ST 97.2 0.00026 8.8E-09 49.5 3.3 25 17-41 30-54 (263)
317 3lnc_A Guanylate kinase, GMP k 97.2 0.00013 4.4E-09 49.9 1.8 24 17-40 27-51 (231)
318 1odf_A YGR205W, hypothetical 3 97.2 0.00049 1.7E-08 48.8 4.8 25 14-38 28-52 (290)
319 3dl0_A Adenylate kinase; phosp 97.2 0.00027 9.2E-09 47.7 3.3 21 19-39 2-22 (216)
320 1kht_A Adenylate kinase; phosp 97.2 0.00029 9.8E-09 46.4 3.4 22 18-39 4-25 (192)
321 3cm0_A Adenylate kinase; ATP-b 97.2 0.0003 1E-08 46.2 3.5 23 17-39 4-26 (186)
322 3vaa_A Shikimate kinase, SK; s 97.2 0.00033 1.1E-08 46.7 3.6 24 16-39 24-47 (199)
323 2yvu_A Probable adenylyl-sulfa 97.2 0.00035 1.2E-08 46.0 3.7 26 14-39 10-35 (186)
324 3end_A Light-independent proto 97.2 0.0059 2E-07 43.4 10.3 69 60-130 156-225 (307)
325 1qhx_A CPT, protein (chloramph 97.1 0.00027 9.3E-09 46.1 3.0 23 18-40 4-26 (178)
326 2rhm_A Putative kinase; P-loop 97.1 0.00032 1.1E-08 46.3 3.3 23 17-39 5-27 (193)
327 1aky_A Adenylate kinase; ATP:A 97.1 0.00036 1.2E-08 47.3 3.6 24 16-39 3-26 (220)
328 3nh6_A ATP-binding cassette SU 97.1 0.00017 5.9E-09 51.5 2.1 26 16-41 79-104 (306)
329 2f1r_A Molybdopterin-guanine d 97.1 0.00012 4.1E-09 47.8 1.1 22 19-40 4-25 (171)
330 2x8a_A Nuclear valosin-contain 97.1 0.00026 8.9E-09 49.8 2.9 21 20-40 47-67 (274)
331 1nks_A Adenylate kinase; therm 97.1 0.00033 1.1E-08 46.2 3.2 21 19-39 3-23 (194)
332 3tui_C Methionine import ATP-b 97.1 0.0003 1E-08 51.4 3.2 25 17-41 54-78 (366)
333 1lw7_A Transcriptional regulat 97.1 0.00022 7.7E-09 52.2 2.6 25 17-41 170-194 (365)
334 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00028 9.5E-09 51.5 3.0 24 18-41 31-54 (359)
335 3bos_A Putative DNA replicatio 97.1 0.00061 2.1E-08 46.4 4.6 25 16-40 51-75 (242)
336 2jaq_A Deoxyguanosine kinase; 97.1 0.00035 1.2E-08 46.5 3.4 21 19-39 2-22 (205)
337 2kjq_A DNAA-related protein; s 97.1 0.00021 7.3E-09 45.5 2.1 25 16-40 35-59 (149)
338 2bwj_A Adenylate kinase 5; pho 97.1 0.00042 1.5E-08 45.9 3.7 23 17-39 12-34 (199)
339 2bbs_A Cystic fibrosis transme 97.1 0.00033 1.1E-08 49.7 3.1 26 16-41 63-88 (290)
340 2plr_A DTMP kinase, probable t 97.1 0.0004 1.4E-08 46.5 3.4 23 17-39 4-26 (213)
341 2v54_A DTMP kinase, thymidylat 97.1 0.00047 1.6E-08 46.0 3.7 24 17-40 4-27 (204)
342 1z47_A CYSA, putative ABC-tran 97.1 0.00035 1.2E-08 50.9 3.2 24 18-41 42-65 (355)
343 3trf_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 45.5 3.2 23 17-39 5-27 (185)
344 3rlf_A Maltose/maltodextrin im 97.0 0.00037 1.3E-08 51.2 3.2 24 18-41 30-53 (381)
345 1uf9_A TT1252 protein; P-loop, 97.0 0.00046 1.6E-08 45.9 3.5 26 15-40 6-31 (203)
346 1tev_A UMP-CMP kinase; ploop, 97.0 0.00046 1.6E-08 45.5 3.4 23 17-39 3-25 (196)
347 2yyz_A Sugar ABC transporter, 97.0 0.00037 1.3E-08 50.9 3.2 25 17-41 29-53 (359)
348 1ixz_A ATP-dependent metallopr 97.0 0.00036 1.2E-08 48.3 3.0 21 20-40 52-72 (254)
349 2it1_A 362AA long hypothetical 97.0 0.00039 1.3E-08 50.8 3.2 25 17-41 29-53 (362)
350 3jvv_A Twitching mobility prot 97.0 0.00034 1.2E-08 51.1 2.9 22 19-40 125-146 (356)
351 3t15_A Ribulose bisphosphate c 97.0 0.00041 1.4E-08 49.2 3.3 26 15-40 34-59 (293)
352 2c95_A Adenylate kinase 1; tra 97.0 0.00052 1.8E-08 45.4 3.6 23 17-39 9-31 (196)
353 4e22_A Cytidylate kinase; P-lo 97.0 0.00055 1.9E-08 47.5 3.8 24 15-38 25-48 (252)
354 1e4v_A Adenylate kinase; trans 97.0 0.00047 1.6E-08 46.5 3.2 21 19-39 2-22 (214)
355 1g29_1 MALK, maltose transport 97.0 0.00042 1.4E-08 50.9 3.2 23 19-41 31-53 (372)
356 1v43_A Sugar-binding transport 97.0 0.00043 1.5E-08 50.8 3.2 25 17-41 37-61 (372)
357 1zd8_A GTP:AMP phosphotransfer 97.0 0.0005 1.7E-08 46.8 3.4 23 17-39 7-29 (227)
358 1tue_A Replication protein E1; 97.0 0.00066 2.2E-08 45.5 3.8 24 16-39 57-80 (212)
359 1via_A Shikimate kinase; struc 97.0 0.00044 1.5E-08 45.1 2.9 21 19-39 6-26 (175)
360 1nn5_A Similar to deoxythymidy 97.0 0.00055 1.9E-08 46.0 3.5 24 16-39 8-31 (215)
361 1gvn_B Zeta; postsegregational 97.0 0.00057 2E-08 48.4 3.6 25 15-39 31-55 (287)
362 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.0004 1.4E-08 50.2 2.9 25 17-41 171-195 (330)
363 3iij_A Coilin-interacting nucl 97.0 0.00055 1.9E-08 44.8 3.3 24 16-39 10-33 (180)
364 3sr0_A Adenylate kinase; phosp 97.0 0.00056 1.9E-08 46.0 3.3 22 19-40 2-23 (206)
365 2gza_A Type IV secretion syste 97.0 0.00042 1.4E-08 50.7 2.9 26 16-41 174-199 (361)
366 2wwf_A Thymidilate kinase, put 97.0 0.00054 1.9E-08 45.9 3.3 24 16-39 9-32 (212)
367 2vp4_A Deoxynucleoside kinase; 97.0 0.00043 1.5E-08 47.3 2.8 27 14-40 17-43 (230)
368 2w58_A DNAI, primosome compone 97.0 0.00098 3.4E-08 44.4 4.5 23 18-40 55-77 (202)
369 1ukz_A Uridylate kinase; trans 97.0 0.0007 2.4E-08 45.1 3.7 25 15-39 13-37 (203)
370 1rj9_A FTSY, signal recognitio 96.9 0.00069 2.4E-08 48.3 3.8 23 16-38 101-123 (304)
371 2pt5_A Shikimate kinase, SK; a 96.9 0.00061 2.1E-08 43.9 3.2 21 19-39 2-22 (168)
372 1zak_A Adenylate kinase; ATP:A 96.9 0.00057 2E-08 46.3 3.1 23 17-39 5-27 (222)
373 1iy2_A ATP-dependent metallopr 96.9 0.00054 1.9E-08 48.1 3.0 21 20-40 76-96 (278)
374 3d31_A Sulfate/molybdate ABC t 96.9 0.00035 1.2E-08 50.8 2.0 24 18-41 27-50 (348)
375 1vht_A Dephospho-COA kinase; s 96.9 0.00075 2.6E-08 45.6 3.6 23 17-39 4-26 (218)
376 2pez_A Bifunctional 3'-phospho 96.9 0.00072 2.5E-08 44.2 3.4 24 16-39 4-27 (179)
377 1in4_A RUVB, holliday junction 96.9 0.00053 1.8E-08 49.6 2.9 23 18-40 52-74 (334)
378 3gd7_A Fusion complex of cysti 96.9 0.00054 1.9E-08 50.6 3.0 24 17-40 47-70 (390)
379 3b9q_A Chloroplast SRP recepto 96.9 0.00055 1.9E-08 48.8 3.0 24 16-39 99-122 (302)
380 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00058 2E-08 46.4 2.9 23 17-39 23-45 (235)
381 2ewv_A Twitching motility prot 96.9 0.0008 2.8E-08 49.4 3.8 26 15-40 134-159 (372)
382 1xjc_A MOBB protein homolog; s 96.9 0.00084 2.9E-08 43.6 3.5 23 18-40 5-27 (169)
383 3e70_C DPA, signal recognition 96.9 0.00078 2.7E-08 48.6 3.6 110 15-131 127-281 (328)
384 2ze6_A Isopentenyl transferase 96.9 0.0006 2.1E-08 47.3 3.0 21 19-39 3-23 (253)
385 2xb4_A Adenylate kinase; ATP-b 96.9 0.00076 2.6E-08 45.8 3.4 21 19-39 2-22 (223)
386 1ak2_A Adenylate kinase isoenz 96.9 0.00088 3E-08 45.8 3.7 25 15-39 14-38 (233)
387 3be4_A Adenylate kinase; malar 96.9 0.00066 2.3E-08 45.9 3.0 23 17-39 5-27 (217)
388 2z0h_A DTMP kinase, thymidylat 96.9 0.00068 2.3E-08 44.9 3.0 22 19-40 2-23 (197)
389 2pbr_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 44.4 3.2 21 19-39 2-22 (195)
390 1p9r_A General secretion pathw 96.8 0.00061 2.1E-08 50.8 2.9 26 15-40 165-190 (418)
391 2oap_1 GSPE-2, type II secreti 96.8 0.00064 2.2E-08 52.0 3.1 25 17-41 260-284 (511)
392 2chg_A Replication factor C sm 96.8 0.0012 4.2E-08 44.2 4.2 22 19-40 40-61 (226)
393 1d2n_A N-ethylmaleimide-sensit 96.8 0.0015 5.1E-08 45.7 4.7 27 14-40 61-87 (272)
394 1e6c_A Shikimate kinase; phosp 96.8 0.00078 2.7E-08 43.6 3.0 21 19-39 4-24 (173)
395 2p5t_B PEZT; postsegregational 96.8 0.00067 2.3E-08 47.1 2.8 25 15-39 30-54 (253)
396 2f6r_A COA synthase, bifunctio 96.8 0.00093 3.2E-08 47.1 3.5 24 15-38 73-96 (281)
397 3h4m_A Proteasome-activating n 96.8 0.0014 4.7E-08 46.1 4.4 26 15-40 49-74 (285)
398 1uj2_A Uridine-cytidine kinase 96.8 0.0009 3.1E-08 46.3 3.4 25 15-39 20-44 (252)
399 1oxx_K GLCV, glucose, ABC tran 96.8 0.00034 1.2E-08 51.0 1.3 25 17-41 31-55 (353)
400 1cr0_A DNA primase/helicase; R 96.8 0.00068 2.3E-08 48.1 2.8 24 16-39 34-57 (296)
401 1lv7_A FTSH; alpha/beta domain 96.8 0.00089 3E-08 46.4 3.3 24 17-40 45-68 (257)
402 2obl_A ESCN; ATPase, hydrolase 96.8 0.00076 2.6E-08 49.1 3.1 27 15-41 69-95 (347)
403 2iyv_A Shikimate kinase, SK; t 96.8 0.00081 2.8E-08 44.1 3.0 21 19-39 4-24 (184)
404 2vli_A Antibiotic resistance p 96.8 0.0006 2.1E-08 44.6 2.3 23 17-39 5-27 (183)
405 3kta_A Chromosome segregation 96.8 0.00084 2.9E-08 43.9 3.0 21 19-39 28-48 (182)
406 3r20_A Cytidylate kinase; stru 96.8 0.00097 3.3E-08 45.7 3.4 24 16-39 8-31 (233)
407 1zuh_A Shikimate kinase; alpha 96.8 0.00097 3.3E-08 43.0 3.3 21 19-39 9-29 (168)
408 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00063 2.1E-08 51.4 2.6 27 15-41 136-162 (460)
409 1gtv_A TMK, thymidylate kinase 96.8 0.00029 9.9E-09 47.3 0.7 21 19-39 2-22 (214)
410 1qf9_A UMP/CMP kinase, protein 96.8 0.0012 4E-08 43.5 3.6 22 18-39 7-28 (194)
411 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.8E-08 46.2 3.4 22 18-39 5-26 (260)
412 3pxg_A Negative regulator of g 96.7 0.0014 4.9E-08 49.6 4.3 35 6-40 190-224 (468)
413 2cvh_A DNA repair and recombin 96.7 0.00091 3.1E-08 45.0 2.9 24 16-39 19-42 (220)
414 3n70_A Transport activator; si 96.7 0.0011 3.9E-08 41.8 3.1 26 15-40 22-47 (145)
415 1n0w_A DNA repair protein RAD5 96.7 0.00097 3.3E-08 45.6 3.0 25 16-40 23-47 (243)
416 2grj_A Dephospho-COA kinase; T 96.7 0.0012 4.2E-08 43.8 3.3 25 16-40 11-35 (192)
417 2og2_A Putative signal recogni 96.7 0.00095 3.3E-08 48.7 3.0 24 16-39 156-179 (359)
418 3te6_A Regulatory protein SIR3 96.7 0.00091 3.1E-08 48.0 2.7 28 13-40 41-68 (318)
419 3nwj_A ATSK2; P loop, shikimat 96.7 0.00098 3.3E-08 46.2 2.7 23 17-39 48-70 (250)
420 1m7g_A Adenylylsulfate kinase; 96.7 0.0014 4.8E-08 44.0 3.4 25 15-39 23-47 (211)
421 3umf_A Adenylate kinase; rossm 96.7 0.0016 5.4E-08 44.1 3.6 21 19-39 31-51 (217)
422 2qgz_A Helicase loader, putati 96.6 0.0022 7.6E-08 45.8 4.5 24 16-39 151-174 (308)
423 2yhs_A FTSY, cell division pro 96.6 0.0011 3.6E-08 50.4 3.0 24 16-39 292-315 (503)
424 4eaq_A DTMP kinase, thymidylat 96.6 0.0015 5.1E-08 44.6 3.5 26 15-40 24-49 (229)
425 1nij_A Hypothetical protein YJ 96.6 0.00084 2.9E-08 48.2 2.3 23 19-41 6-28 (318)
426 3cf0_A Transitional endoplasmi 96.6 0.0021 7.2E-08 45.7 4.3 26 15-40 47-72 (301)
427 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.1E-08 41.5 3.1 19 20-38 26-44 (149)
428 1svm_A Large T antigen; AAA+ f 96.6 0.0015 5E-08 48.1 3.5 25 15-39 167-191 (377)
429 2dpy_A FLII, flagellum-specifi 96.6 0.0012 4.1E-08 49.6 3.1 27 15-41 155-181 (438)
430 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0027 9.1E-08 46.2 4.8 26 14-39 21-46 (359)
431 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0014 4.6E-08 50.6 3.4 26 16-41 46-71 (538)
432 1sxj_E Activator 1 40 kDa subu 96.6 0.0017 5.9E-08 47.1 3.8 21 19-39 38-58 (354)
433 3euj_A Chromosome partition pr 96.6 0.0012 4.2E-08 50.0 3.0 22 18-39 30-51 (483)
434 3ozx_A RNAse L inhibitor; ATP 96.6 0.0013 4.3E-08 50.8 3.1 26 16-41 24-49 (538)
435 4b4t_M 26S protease regulatory 96.6 0.0024 8.1E-08 47.8 4.4 26 15-40 213-238 (434)
436 3gmt_A Adenylate kinase; ssgci 96.6 0.0018 6E-08 44.2 3.4 24 16-39 7-30 (230)
437 1fnn_A CDC6P, cell division co 96.6 0.002 6.7E-08 47.2 3.9 22 19-40 46-67 (389)
438 3b9p_A CG5977-PA, isoform A; A 96.6 0.0017 5.9E-08 45.9 3.4 25 16-40 53-77 (297)
439 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0019 6.5E-08 44.7 3.6 24 16-39 38-61 (262)
440 3syl_A Protein CBBX; photosynt 96.5 0.0018 6.2E-08 46.0 3.5 26 14-39 64-89 (309)
441 1sxj_C Activator 1 40 kDa subu 96.5 0.0022 7.7E-08 46.3 4.0 22 19-40 48-69 (340)
442 1njg_A DNA polymerase III subu 96.5 0.0015 5.1E-08 44.3 2.9 21 19-39 47-67 (250)
443 1q3t_A Cytidylate kinase; nucl 96.5 0.002 7E-08 44.1 3.5 25 15-39 14-38 (236)
444 3j16_B RLI1P; ribosome recycli 96.5 0.0016 5.4E-08 50.9 3.2 26 16-41 102-127 (608)
445 3b60_A Lipid A export ATP-bind 96.5 0.0019 6.4E-08 50.3 3.5 26 16-41 368-393 (582)
446 1sxj_D Activator 1 41 kDa subu 96.5 0.0027 9.2E-08 45.9 4.2 22 19-40 60-81 (353)
447 1nlf_A Regulatory protein REPA 96.5 0.0016 5.4E-08 45.8 2.8 23 17-39 30-52 (279)
448 1ltq_A Polynucleotide kinase; 96.5 0.0019 6.4E-08 45.9 3.1 22 18-39 3-24 (301)
449 4b4t_K 26S protease regulatory 96.5 0.003 1E-07 47.2 4.3 26 15-40 204-229 (428)
450 2qmh_A HPR kinase/phosphorylas 96.4 0.0021 7.3E-08 42.8 3.1 26 16-41 33-58 (205)
451 4b4t_L 26S protease subunit RP 96.4 0.0033 1.1E-07 47.1 4.4 27 14-40 212-238 (437)
452 1p5z_B DCK, deoxycytidine kina 96.4 0.0014 4.7E-08 45.7 2.2 27 14-40 21-47 (263)
453 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.002 6.8E-08 47.2 3.1 22 16-38 23-44 (365)
454 3b5x_A Lipid A export ATP-bind 96.4 0.0022 7.6E-08 49.9 3.5 26 16-41 368-393 (582)
455 1l8q_A Chromosomal replication 96.4 0.0019 6.4E-08 46.4 2.9 25 16-40 36-60 (324)
456 3ozx_A RNAse L inhibitor; ATP 96.4 0.0019 6.6E-08 49.7 3.1 23 19-41 296-318 (538)
457 3bk7_A ABC transporter ATP-bin 96.4 0.0021 7.2E-08 50.2 3.3 26 16-41 116-141 (607)
458 2yl4_A ATP-binding cassette SU 96.4 0.0019 6.4E-08 50.5 3.0 26 16-41 369-394 (595)
459 2qby_A CDC6 homolog 1, cell di 96.4 0.0018 6.3E-08 47.2 2.7 26 15-40 43-68 (386)
460 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0024 8.2E-08 49.2 3.4 24 18-41 313-336 (538)
461 1a7j_A Phosphoribulokinase; tr 96.3 0.0014 4.7E-08 46.5 1.9 24 16-39 4-27 (290)
462 3qf4_B Uncharacterized ABC tra 96.3 0.0022 7.4E-08 50.1 3.1 26 16-41 380-405 (598)
463 3co5_A Putative two-component 96.3 0.0012 4.3E-08 41.5 1.5 26 15-40 25-50 (143)
464 3v9p_A DTMP kinase, thymidylat 96.3 0.0024 8.2E-08 43.6 3.0 25 15-39 23-47 (227)
465 3ake_A Cytidylate kinase; CMP 96.3 0.0027 9.3E-08 42.3 3.2 21 19-39 4-24 (208)
466 4b4t_J 26S protease regulatory 96.3 0.0033 1.1E-07 46.5 3.9 26 15-40 180-205 (405)
467 4ido_A Atlastin-1; GTPase, GTP 96.3 0.016 5.4E-07 43.6 7.5 25 14-38 64-88 (457)
468 2dr3_A UPF0273 protein PH0284; 96.3 0.0024 8.3E-08 43.7 3.0 21 18-38 24-44 (247)
469 3qf4_A ABC transporter, ATP-bi 96.3 0.0017 5.9E-08 50.6 2.4 26 16-41 368-393 (587)
470 4fcw_A Chaperone protein CLPB; 96.3 0.0032 1.1E-07 44.8 3.6 23 18-40 48-70 (311)
471 1pzn_A RAD51, DNA repair and r 96.3 0.0023 7.8E-08 46.6 2.8 25 16-40 130-154 (349)
472 3bk7_A ABC transporter ATP-bin 96.3 0.0028 9.5E-08 49.6 3.4 24 18-41 383-406 (607)
473 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0044 1.5E-07 49.7 4.7 36 5-40 195-230 (758)
474 1ofh_A ATP-dependent HSL prote 96.3 0.0027 9.3E-08 45.0 3.1 23 17-39 50-72 (310)
475 2px0_A Flagellar biosynthesis 96.3 0.0034 1.2E-07 44.6 3.6 110 16-132 104-253 (296)
476 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0024 8.3E-08 45.9 2.8 24 17-40 45-68 (322)
477 3pxi_A Negative regulator of g 96.3 0.0039 1.3E-07 50.1 4.3 36 5-40 189-224 (758)
478 2qby_B CDC6 homolog 3, cell di 96.3 0.004 1.4E-07 45.6 4.0 25 16-40 44-68 (384)
479 4a82_A Cystic fibrosis transme 96.2 0.0018 6.3E-08 50.3 2.3 26 16-41 366-391 (578)
480 1u0j_A DNA replication protein 96.2 0.0053 1.8E-07 42.8 4.3 23 17-39 104-126 (267)
481 3eie_A Vacuolar protein sortin 96.2 0.0037 1.3E-07 44.9 3.6 25 16-40 50-74 (322)
482 3j16_B RLI1P; ribosome recycli 96.2 0.0029 1E-07 49.4 3.2 23 19-41 380-402 (608)
483 1vma_A Cell division protein F 96.2 0.0031 1.1E-07 45.0 3.0 22 17-38 104-125 (306)
484 2v1u_A Cell division control p 96.2 0.0024 8.3E-08 46.6 2.5 26 15-40 42-67 (387)
485 4b4t_I 26S protease regulatory 96.1 0.0058 2E-07 45.6 4.3 26 15-40 214-239 (437)
486 2r62_A Cell division protease 96.1 0.0021 7.1E-08 44.8 1.8 22 18-39 45-66 (268)
487 3qks_A DNA double-strand break 96.1 0.0041 1.4E-07 41.6 3.1 19 20-38 26-44 (203)
488 3d3q_A TRNA delta(2)-isopenten 96.1 0.0038 1.3E-07 45.1 3.1 23 18-40 8-30 (340)
489 3uk6_A RUVB-like 2; hexameric 96.1 0.0061 2.1E-07 44.4 4.3 22 18-39 71-92 (368)
490 3zvl_A Bifunctional polynucleo 96.1 0.0047 1.6E-07 46.1 3.6 25 16-40 257-281 (416)
491 3crm_A TRNA delta(2)-isopenten 96.1 0.004 1.4E-07 44.7 3.1 23 18-40 6-28 (323)
492 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0034 1.2E-07 47.9 2.9 22 19-40 66-87 (499)
493 2ocp_A DGK, deoxyguanosine kin 96.0 0.0049 1.7E-07 42.3 3.4 24 17-40 2-25 (241)
494 3m6a_A ATP-dependent protease 96.0 0.0035 1.2E-07 48.4 2.9 24 16-39 107-130 (543)
495 3a8t_A Adenylate isopentenyltr 96.0 0.0059 2E-07 44.1 3.8 24 18-41 41-64 (339)
496 4f4c_A Multidrug resistance pr 96.0 0.0024 8.2E-08 54.4 2.0 21 19-39 1107-1127(1321)
497 3tqf_A HPR(Ser) kinase; transf 96.0 0.0045 1.5E-07 40.3 2.9 26 16-41 15-40 (181)
498 1qvr_A CLPB protein; coiled co 96.0 0.0042 1.4E-07 50.6 3.4 36 5-40 179-214 (854)
499 4b4t_H 26S protease regulatory 96.0 0.0057 2E-07 46.0 3.8 26 15-40 241-266 (467)
500 2qp9_X Vacuolar protein sortin 96.0 0.004 1.4E-07 45.4 2.9 24 17-40 84-107 (355)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-38 Score=212.62 Aligned_cols=179 Identities=50% Similarity=0.886 Sum_probs=153.5
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030133 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|+.+++++++ .+..+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8889999988 888999999999999999999999999888777778888888888889999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030133 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999998877654468999999999999876666777766665444456789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030133 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
++|.|+++++++|.+.+...
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 2
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=2.3e-38 Score=213.22 Aligned_cols=181 Identities=56% Similarity=1.034 Sum_probs=157.1
Q ss_pred ChhhHHHHhh--hhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030133 1 MGIMFSRMFS--SLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
|++.++++++ +.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+.+....+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6777777777 6777 889999999999999999999999888877788888888888889999999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030133 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+++.+|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++...+........++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999988877655568999999999999876666777777765555566789999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCC
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
+||+++.|+++++++|.+.+.+..
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ccCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999887654
No 3
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-38 Score=212.01 Aligned_cols=180 Identities=64% Similarity=1.106 Sum_probs=155.2
Q ss_pred ChhhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030133 1 MGIMFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|++++++.++..+. .+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88999999999987 89999999999999999999999988886688888888888888899999999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030133 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887655456899999999999987666777777776554555678999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|+++++++|.+.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=9.3e-37 Score=204.84 Aligned_cols=176 Identities=47% Similarity=0.855 Sum_probs=145.2
Q ss_pred hHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhc
Q 030133 4 MFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 4 ~~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
+++ .+++.+. ++.++|+++|++|+|||||++++.++......||.+.....+.+.+..+.+|||||++.+...+..++
T Consensus 5 ~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 83 (186)
T 1ksh_A 5 LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83 (186)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGC
T ss_pred hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 444 4555555 78999999999999999999999988855588888888888888999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999999999999999998887765556899999999999987666667666665444455678999999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030133 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
|.|+++++++|.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999987653
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=3.2e-37 Score=208.22 Aligned_cols=175 Identities=54% Similarity=1.028 Sum_probs=149.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC
Q 030133 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+..++++.+..+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++.
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 44567778888999999999999999999999999888877888888888888899999999999999999999999999
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030133 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999999999999999999888776555689999999999997766667777777665555667899999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030133 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|+++++++|.+.+.+
T Consensus 177 gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 177 GLYDGLDWLSHELSK 191 (192)
T ss_dssp THHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988754
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=8.2e-36 Score=197.50 Aligned_cols=166 Identities=66% Similarity=1.090 Sum_probs=147.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
++.++|+++|++|+|||||++++.++.+....||.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999999888888888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030133 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..++......+.|+++|+||+|+.+.....++...+........+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998887765556899999999999987766677777776555556778999999999999999999999
Q ss_pred HHHhcC
Q 030133 175 NTLKSG 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988764
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=2.8e-36 Score=201.83 Aligned_cols=166 Identities=47% Similarity=0.865 Sum_probs=143.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030133 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++|++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999998988887665556899999999999987666666666665444455678899999999999999999999
Q ss_pred HHHhcC
Q 030133 175 NTLKSG 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHhc
Confidence 887654
No 8
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4.7e-36 Score=197.44 Aligned_cols=163 Identities=59% Similarity=1.091 Sum_probs=142.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998887778888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030133 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.++.....|+..+.......+.|+++|+||+|+.+.....++...+.........++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765556899999999999977666677777766555555678899999999999999999999987
Q ss_pred hcC
Q 030133 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.+.
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 653
No 9
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=3e-35 Score=198.23 Aligned_cols=164 Identities=35% Similarity=0.616 Sum_probs=138.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34678899999999999999999999998877888888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc-------ccCCceEEEEecCCCCCC
Q 030133 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-------IKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+...... .....++++++||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999998887765556899999999999987666666666554322 233567899999999999
Q ss_pred HHHHHHHHHHH
Q 030133 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
++++|++|.+.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5e-37 Score=210.03 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=122.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+.+.+||+++|++|+|||||+++|..+.|.. +.||++.+.. .+.. ....+.+|||+|++++..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4578999999999999999999999998877 7788875543 3333 346889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|||+++..++..+..|+..+..... ++.|+++|+||+|+.+. ...++.... +...++++++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhH-----HHHhCCeeEEEeCCCCcCH
Confidence 999999999999999999988865433 67999999999999643 233332222 2334567999999999999
Q ss_pred HHHHHHHHHHHh
Q 030133 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|+.|++.+.
T Consensus 164 ~e~F~~i~~~i~ 175 (216)
T 4dkx_A 164 KQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=2.5e-35 Score=197.12 Aligned_cols=163 Identities=50% Similarity=0.878 Sum_probs=142.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|.+|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 46789999999999999999999999998667888888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030133 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999888776545689999999999998766677777776655555567899999999999999999998
Q ss_pred HHH
Q 030133 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 764
No 12
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3.3e-35 Score=197.72 Aligned_cols=167 Identities=32% Similarity=0.675 Sum_probs=144.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|.+.....+......+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 4678999999999999999999999988875 778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030133 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+........+++++++||++|.|++++|++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999988877654568999999999999876566677666665544556788999999999999999999
Q ss_pred HHHHHhcC
Q 030133 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
|.+.+.+.
T Consensus 179 l~~~~~~~ 186 (188)
T 1zd9_A 179 LIQHSKSR 186 (188)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99877654
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.8e-35 Score=197.92 Aligned_cols=169 Identities=37% Similarity=0.647 Sum_probs=142.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.....+|+++|++|+|||||+++|.+..+.. +.+|.+.....+......+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345788999999999999999999999988776 478888888888889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhcccc-------CCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCC
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEEL-------KGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
+|+|++++.++.....|+..++..... .+.|+++|+||+|+.+.....++...+..... ...+++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999888765322 27899999999999877666777776664433 4577899999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030133 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+|.|++++|++|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=4.7e-35 Score=198.45 Aligned_cols=165 Identities=30% Similarity=0.599 Sum_probs=132.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 45678899999999999999999999988877778888888888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEecC
Q 030133 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCA 160 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 160 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+...... .....++++++||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999887765556899999999999977656666666554321 0125678999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030133 161 IKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~ 177 (182)
++|+|++++|++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998654
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=192.96 Aligned_cols=166 Identities=42% Similarity=0.763 Sum_probs=139.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-cc-cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGE-VV-STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
..+.++|+++|++|+|||||++++.+.. +. ...+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999999999999999887 33 377788888888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcccc--CCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+...... .+.|+++|+||+|+.+....+++............+++++++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999998898888776443 57899999999999876666666666653333345789999999999999999
Q ss_pred HHHHHHHHhc
Q 030133 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 178 ~~~l~~~i~~ 187 (190)
T 2h57_A 178 VDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=206.43 Aligned_cols=167 Identities=59% Similarity=1.093 Sum_probs=145.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|++|+|||||+++|.++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999998887788988888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030133 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++..++.....++..++......+.|+++|+||+|+.+.....++...+........+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998777777888888776666778899999999999999999999
Q ss_pred HHHHhcC
Q 030133 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988654
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=2.1e-32 Score=208.45 Aligned_cols=165 Identities=55% Similarity=1.054 Sum_probs=149.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|.+|+|||||+++|.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++|+|+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~ 399 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDC 399 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEET
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEEC
Confidence 56799999999999999999999999988888899999999988999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030133 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..++......++|+++|+||+|+.+.....++...+.........++++++||++|.|++++|++|.
T Consensus 400 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998776667899999999999987767777777777666666788999999999999999999999
Q ss_pred HHHhc
Q 030133 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 480 ~~~~~ 484 (497)
T 3lvq_E 480 SNYKS 484 (497)
T ss_dssp HHCC-
T ss_pred HHHHh
Confidence 87754
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.5e-33 Score=184.77 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.+||+++|++|+|||||++++.+.......++.+... ..+.. ....+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 36899999999999999999999877665444444333 23333 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030133 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC-----AVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH-----HHHTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH-----HHHhCCcEEEeccCCCCCHHHHH
Confidence 999999999999999888776555689999999999996532 22222111 12234689999999999999999
Q ss_pred HHHHHHHhcC
Q 030133 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~i~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 156 ~~l~~~~~~~ 165 (166)
T 3q72_A 156 EGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=8.1e-33 Score=184.79 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467899999999999999999999877666 556666443 3344454 677999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 99999999999999998888776555679999999999995432 223322222 22356899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030133 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+.+.+.+...
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-33 Score=184.42 Aligned_cols=157 Identities=22% Similarity=0.362 Sum_probs=124.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999988765 56666644 3444454 3588999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-----CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999998888887776543 3578999999999996431 122222111 22346899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030133 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 v~~l~~~i~~~~~ 178 (182)
++++|++|.+.+.
T Consensus 156 i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 156 VNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2e-32 Score=182.80 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=127.4
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCC
Q 030133 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
.......++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 3445678999999999999999999999988766 45555543 3444444 46899999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTA 159 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCC
Confidence 99999999999999988888888776543 2578999999999996432 233333322 123568999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030133 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|+++++++|.+.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999877653
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.1e-32 Score=183.38 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=124.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.+||+++|++|+|||||++++.++.+.. ..+|.+.....+.+.+ ..+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 35678999999999999999999999988776 5555444445556655 567789999998776 667899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|||++++.++.....|+..+.......+.|+++|+||+|+.+ ....++...... ....++++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEEEecCCCCCC
Confidence 9999999999999998988887654445789999999999842 122333322221 12236899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 23
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=181.59 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=114.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce--eeEEEECC--EEEEEEECCCCCC--CccchhhhcCCCCeE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNN--IKFQVWDLGGQTS--IRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (182)
.+.++|+++|++|+|||||++++.+..+....++.+.+ ...+.+.+ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998876644444433 34455554 4788999999987 456667788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence 9999999999999988888877665444579999999999996532 222222111 123467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+..
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.3e-32 Score=183.24 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=127.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC---EEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4678999999999999999999999988765 556665 4455666654 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++++.++.....|+..+..... ....|+++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999998888888777654221 123448999999999642 22333322221 22467999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030133 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++++|++|.+.+.+.+
T Consensus 158 ~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp TTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999887653
No 25
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-31 Score=180.55 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 457899999999999999999999988765 55665543 3444443 468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999998888888888665444679999999999995432 223322222 22346799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030133 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|++|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 26
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=187.14 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=125.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EE--ECCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..+.+||+++|++|+|||||+++|.++.+.. ..+|.+..... +. .....+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34678999999999999999999999988776 55555543322 22 2567889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCCCH
Confidence 9999999999999999999888776555678999999999986432 222222221 223458999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030133 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 175 ~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 175 QGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.2e-32 Score=181.95 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=126.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 467899999999999999999999888766 555655443 344443 568899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... .++.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888888776543 257899999999998542 2223332222 2245689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 28
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.5e-32 Score=180.54 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=120.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.+..+.. ..++.+.... .+.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 3567999999999999999999999888765 6666665443 34443 35789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 99999999999988888877764432 246899999999999643 2233333222 223468999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.6e-31 Score=176.08 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999988766 5555554332 2233 346789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999998888888887665444679999999999996432 2233322221 123568999999999999999
Q ss_pred HHHHHHHHh
Q 030133 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
No 30
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.1e-31 Score=178.19 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=128.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..++.+... ......+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4678999999999999999999999888766 555555433 3334444 45667999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCC-CCCCH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAI-KGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v 166 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCH
Confidence 99999999999999999888876555568899999999999652 23333332222 223569999999 99999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.7e-32 Score=183.01 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=129.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..+.++|+++|++|+|||||++++.+..+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45678999999999999999999999988766 555665443 3344544 5788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999998888665555678999999999996432 222222221 223568999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-31 Score=178.81 Aligned_cols=162 Identities=23% Similarity=0.275 Sum_probs=128.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..++.++|+++|++|+|||||++++.+..+.. ..++.+..... +.. ....+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34678999999999999999999999988765 66666654433 333 45789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence 999999999999999888887775432 357899999999999642 2233333332 23457899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
+++++++|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 33
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.5e-31 Score=179.60 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=124.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++|+|||||++++.+..+.. ..+|+. .....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999888766 444443 2233344444 457789999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999998988887765556899999999999975433222222222 1223569999999999999999
Q ss_pred HHHHHHHhc
Q 030133 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
No 34
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=181.06 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.+..+.. ..+|.+ +....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 567899999999999999999999988765 566655 3345555655 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCce-EEEEecCCCCCCH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQW-AIFKTCAIKGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999988888887775543 357899999999999642 23333333222 2345 7999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030133 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.98 E-value=3.5e-32 Score=181.15 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=126.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+... ...+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4678999999999999999999999988766 55555533 3444454 36889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999888888877765432 257899999999999542 22233333222 23468999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|+++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 36
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.98 E-value=3.7e-31 Score=176.03 Aligned_cols=163 Identities=15% Similarity=0.283 Sum_probs=127.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3567899999999999999999999888765 566666443 4445554 5899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ..++...... ....++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999988888888777754322 2578999999999996432 2333333222 1345679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030133 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=7.6e-32 Score=181.36 Aligned_cols=160 Identities=19% Similarity=0.331 Sum_probs=126.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 4567999999999999999999999988765 556665443 334443 46889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999988888877765432 3578999999999996432 2223222221 22457999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 173 ~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 173 KQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=1.1e-31 Score=177.37 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999988765 556655443 444444 3688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999998888888887775543 2578999999999995432 2222222221 12357999999999999999
Q ss_pred HHHHHHHHhcC
Q 030133 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
+++|.+.+.+.
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=6e-32 Score=178.62 Aligned_cols=159 Identities=25% Similarity=0.319 Sum_probs=126.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 457899999999999999999999988765 566665443 344444 378899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999988888787776543 33678999999999996432 222222221 2234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-32 Score=180.52 Aligned_cols=161 Identities=19% Similarity=0.341 Sum_probs=119.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeE--EEECC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..++|+++|++|+|||||++++.+..+.. ..+|++..... +...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 4678999999999999999999999988753 56666655443 34444 588999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999988888888877755332 578999999999997532 2223222221 1235799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 41
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=1.9e-32 Score=183.26 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=99.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 567999999999999999999999887765 55666644 34455555 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888887775532 2578999999999996532 233333222 1234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 42
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.3e-32 Score=180.24 Aligned_cols=159 Identities=23% Similarity=0.378 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3678999999999999999999999988765 5555553 445555665 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999999888888775543 479999999999986432 222222221 122357999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=8.4e-32 Score=181.95 Aligned_cols=159 Identities=22% Similarity=0.347 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 567899999999999999999999988766 5566554 344555555 67999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence 9999999999988888877775443 25789999999999965432 22222221 2234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 168 ~l~~~l~~~i~~ 179 (196)
T 3tkl_A 168 QSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.98 E-value=4.7e-31 Score=177.86 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=129.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee---EEEEC-----------CEEEEEEECCCCCCCccc
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~ 77 (182)
..++.++|+++|++|+|||||++++.+..+.. ..+|.+.... .+... ...+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 34678999999999999999999999988765 6667665543 33333 468999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEE
Q 030133 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCE
Confidence 99999999999999999999999888888888766544467999999999999642 22333332221 123579
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030133 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||+++.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=4.3e-32 Score=179.31 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=115.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC--EEEEEEECCCCCCCcc-chhhhcCCCCeEEE
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+||+++|++|+|||||++++.+..... ..++.+.....+.+.+ ..+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5799999999999999999998766544 2223334444555544 6778999999998865 66777888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998877655457999999999998632 2223322222 23356899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030133 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+++.+.+...
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.98 E-value=1.2e-31 Score=181.12 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=123.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..+|.+..... +...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4577999999999999999999999988766 56666644333 33444 56699999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceE-EEEecCCCC
Q 030133 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWA-IFKTCAIKG 163 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (182)
+|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++...... ..++. ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCC
Confidence 99999999999887 4455444322 357999999999999643 22233322222 12333 999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030133 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++|++|.+.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988755
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.98 E-value=8.5e-32 Score=183.24 Aligned_cols=165 Identities=16% Similarity=0.209 Sum_probs=129.2
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCC
Q 030133 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.....+.++|+++|++|+|||||++++.+..+.. ..+|++.. ...+.+.+ ..+.+|||||++.+...+..+++.+
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 33445678999999999999999999999888766 55555533 33444544 5789999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTR 161 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCC
Confidence 999999999999999999888888876554457999999999999643 22333333322 22457999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030133 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|++++|++|.+.+.+
T Consensus 162 ~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 162 ANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 48
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.4e-32 Score=184.71 Aligned_cols=159 Identities=23% Similarity=0.332 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999988765 66666644 34455554 57899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888887775432 357899999999999642 2233322221 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 49
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.98 E-value=1.6e-31 Score=182.12 Aligned_cols=159 Identities=22% Similarity=0.382 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567899999999999999999999988766 55666544 34455544 58999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999888887775433 3578999999999996532 222322222 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=8e-32 Score=177.56 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=124.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999988766 455555333 3344444 5789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 999999999999888888876655457999999999999643 22333332221 23457999999999999999
Q ss_pred HHHHHHHHhc
Q 030133 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=2e-32 Score=180.32 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=125.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999888766 4455442 234444544 4589999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999998888888766555679999999999985432 2222222211 12457999999999999999
Q ss_pred HHHHHHHHhc
Q 030133 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=2.6e-32 Score=183.59 Aligned_cols=162 Identities=25% Similarity=0.366 Sum_probs=123.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCc-cchhhhcCCCC
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (182)
+..+.++|+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34677999999999999999999999888766 5566553 344455554 689999999999887 78888999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCC-
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKG- 163 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 163 (182)
++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH-----HHcCCEEEEEeCCcCC
Confidence 999999999999999988888888766545679999999999995432 222222221 123457999999999
Q ss_pred --CCHHHHHHHHHHHHhc
Q 030133 164 --EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 --~~v~~l~~~i~~~~~~ 179 (182)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 53
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=5.2e-32 Score=183.05 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=122.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--ceeeEEEECC--EEEEEEECCCCCCCcc-chhhhcCCCC
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d 86 (182)
.....++|+++|++|+|||||+++|.+.... ...++++ .....+.+.+ ..+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3467899999999999999999999754432 2333333 3344455544 5778999999988765 6777888999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCC
Confidence 999999999999999999998887654433578999999999996432 222322221 1234679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030133 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
|++++|+.+.+.+.+.
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 54
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=6.7e-32 Score=181.93 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=124.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.+||+++|++|+|||||++++.++.+.. ..++.+ .....+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 3678899999999999999999999988766 455555 3344555544 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNV 171 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999988888887775532 257899999999999642 2233332222 123457999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 172 ~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 172 EEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=180.41 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||+++|.+..+.. ..++.+... ..+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 567999999999999999999999988776 555655433 33333 3468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999998888888887775532 357899999999999643 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.4e-31 Score=178.61 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=125.5
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhc
Q 030133 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
.++++....+.++|+++|++|+|||||++++.++.+.. ..+|.+.... .+... ...+.+|||||++. ...+..++
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHH
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhh
Confidence 35555566788999999999999999999999988766 5566654432 24444 36789999999988 77788889
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 171 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSA 171 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECC
Confidence 999999999999999999888888887766544467999999999999642 22233322221 22468999999
Q ss_pred CCCC-CHHHHHHHHHHHHhc
Q 030133 161 IKGE-GLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~-~v~~l~~~i~~~~~~ 179 (182)
++|. |++++|++|.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 9999 999999999988764
No 57
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.3e-31 Score=179.66 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=126.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999988766 55555533 34455554 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999988888877765432 257899999999999532 2222322222 2345689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=3.5e-31 Score=174.64 Aligned_cols=158 Identities=17% Similarity=0.330 Sum_probs=125.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..+|.+.. ...+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999988766 56665543 3444444 458899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999998888888887776543 57899999999998642 22333332221 234589999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.7e-31 Score=180.07 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=124.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+..++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34678999999999999999999999888765 5566553 344555655 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ..+...... ..+++++++||+++.|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 999999999988888888877775533 24789999999999953322 222222221 12357999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 60
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.5e-31 Score=183.72 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE---CC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY---NN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~---~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+||+++|++|+|||||+++|+++.+.. ..+|.+.......+ .+ ..+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4578999999999999999999999887766 56666655544443 11 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ....... .....+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVME-----VLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHH-----HTTTCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-----HHHHcCCcEEEEecCCCCC
Confidence 999999999999988888877775443 2468999999999996531 2222222 2234567899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++|++|.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988764
No 61
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-31 Score=181.39 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=125.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 467899999999999999999999988765 556665443 334443 468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 9999999999988888887775432 3578999999999996532 2222222221 224579999999999999
Q ss_pred HHHHHHHHHHh
Q 030133 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 62
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=9.3e-31 Score=178.27 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=125.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||++++.+..+.. ..++.+.... .+.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3578999999999999999999999988766 5566654433 33333 36899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ...+...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999998888888777755432 1468999999999997432 2223222221 1345679999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030133 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 63
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=5.8e-32 Score=185.32 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=123.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.....+||+++|++|+|||||+++|.++.+.. ..+|.+..... +.. ....+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34578999999999999999999999988776 56676654432 222 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCce
Q 030133 89 IYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (182)
++|||++++.++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..... ...++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCC
Confidence 99999999999988 566766665432 57999999999999642 2222222221 22345
Q ss_pred -EEEEecCCCCCC-HHHHHHHHHHHHhcC
Q 030133 154 -AIFKTCAIKGEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 -~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 180 (182)
+++++||++|.| ++++|+.+.+.+...
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987643
No 64
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=8.5e-31 Score=175.60 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=128.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4567999999999999999999999888766 455555333 3344444 57899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999888888877655457999999999998643 2233333322 2234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=3e-31 Score=176.71 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=118.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.+||+++|++|+|||||++++.++.+....+|.+.. ...+...+ ..+.+|||||++. ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 46799999999999999999999999887766766643 33344444 5788999999886 4577889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCC----CCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|++++.++.....|+..+... ....+.|+++|+||+|+.+ ....++...... ...+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 9999999999988875444332 2225789999999999842 122333322221 12357899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030133 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=3.7e-30 Score=174.86 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=125.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEECC-------------------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN------------------------------- 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (182)
++.++|+++|++|+|||||+++|++..+.. ..+|.+.... .+.+.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 568999999999999999999999988766 5566654333 333332
Q ss_pred --------EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030133 61 --------IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 61 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|+.+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999988888888776542 499999999999432
Q ss_pred -CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 133 -ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
....++...... ..+++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 223344433332 235689999999999999999999987754
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=3.5e-31 Score=176.79 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=115.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3578999999999999999999999988765 5555553 33444433 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC---CCHHHHHHHhCcccccCCceEEEEecCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA---LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+. ....+...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999888888877765432 257899999999999532 12333322221 1345679999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030133 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+|.|++++|++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 68
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-32 Score=184.68 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 577899999999999999999999988765 45555533 334433 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999998888887777553 33579999999999985432 222222221 2234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (191)
T 3dz8_A 175 QAFERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=178.59 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=117.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCC
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...++.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 345678999999999999999999999988765 5555553 334455544 67899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------CCCHHHHHHHhCcccccCCceEEEEe
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--------ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+ ....++..... ...+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEEe
Confidence 999999999999988888887766443 224789999999999852 11122221111 1235689999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030133 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++|.|++++|++|.+.+.+
T Consensus 177 SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 70
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=6.9e-31 Score=177.54 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=121.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc-----------ccccceeeEE-----EECCEEEEEEECCCCCCCcc
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETV-----QYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~-----~~~~~~~~~~D~~g~~~~~~ 76 (182)
..+..+||+++|++|+|||||++.+.+....... +|.+.+.... ......+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 4467899999999999999999877665543322 2333322221 11346899999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCC------cccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030133 77 YWRCYFPNTEAVIYVVDSSD------TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
.+..+++++|++++|+|+++ ..++.....|+..+. ....+.|+++|+||+|+.+....++.......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 99999999999999999994 455666666666652 23357999999999999877666666555542
Q ss_pred Cce-EEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 151 RQW-AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.++ +++++||++|.|++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 344 79999999999999999999987764
No 71
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=182.64 Aligned_cols=160 Identities=22% Similarity=0.319 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..+|.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999988765 5566553 344555655 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 357899999999999642 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030133 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 72
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.4e-30 Score=173.90 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=123.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. ..+|++... ..+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34577999999999999999999999988766 556665433 3344444 7889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC--------------CHHHHHHHhCcccccCCce
Q 030133 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (182)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..... ...++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCC
Confidence 9999999999988887 5666664432 478999999999996531 111111111 11122
Q ss_pred -EEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 154 -AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 -~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++++||++|.|++++|++|.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999988754
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.7e-30 Score=170.82 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=124.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..++..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999888765 44554433 23344433 56789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030133 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999988888888877665444579999999999997532 2233322221 1235799999999999999999
Q ss_pred HHHHHHhc
Q 030133 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
No 74
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=180.08 Aligned_cols=160 Identities=15% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..+|++... ..+... ...+.+|||||++.+... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4678999999999999999999999988766 566666443 233343 467889999999988764 66889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecC-CCCC
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCA-IKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~ 164 (182)
+|||++++.++.....|+..+..... ..+.|+++|+||+|+.+. ...++...... ..+++++++|| ++|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCccc
Confidence 99999999999999988887765421 257899999999999542 22333322221 22457999999 8999
Q ss_pred CHHHHHHHHHHHHhc
Q 030133 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.|.+.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988754
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=7.8e-32 Score=179.48 Aligned_cols=159 Identities=19% Similarity=0.331 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888766 55666543 34455544 58899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999998888888887775533 2578999999999986432 222322222 1234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
No 76
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.3e-30 Score=178.50 Aligned_cols=162 Identities=23% Similarity=0.334 Sum_probs=119.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEEC---CEEEEEEECCCCCCCcc-chhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+....+++......+.+. ...+.+|||||++.+.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988877556666666666665 67899999999998887 78888999999999
Q ss_pred EEeCCCcc-cHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc---------------------
Q 030133 91 VVDSSDTD-RIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+......+...+...
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99999853 355555555555433 123468999999999997665543333222110
Q ss_pred --ccc---------C--CceEEEEecCCCC------CCHHHHHHHHHHH
Q 030133 147 --KIK---------N--RQWAIFKTCAIKG------EGLFEGMDWLSNT 176 (182)
Q Consensus 147 --~~~---------~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~ 176 (182)
... . ..+++++|||++| .|++++|++|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000 1 1788999999999 9999999999875
No 77
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=176.31 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=121.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||+++|.++.+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3567899999999999999999999988765 5555553 344455544 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCH
Confidence 999999999998888877666543 333579999999999996432 2233222221 123568999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030133 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 78
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=2.3e-30 Score=174.16 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+-+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4567899999999999999999999887765 44444433 23444444 56899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|+++..++.....|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||+++.|+++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999999988888888777654443578999999999996532 2333333222 1234699999999999999
Q ss_pred HHHHHHHHHhcC
Q 030133 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 173 l~~~l~~~~~~~ 184 (190)
T 3con_A 173 AFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 79
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=181.91 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=119.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..++.+ +....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888765 555555 3344455555 78999999999988888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999888888877754332 57899999999999542 2222322222 2245689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030133 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.8e-32 Score=178.08 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+..... +... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999988765 55665544332 3333 35789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999988888887877665432 12468999999999985432 222222111 12346799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030133 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
++++|.+.+...
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
No 81
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=6.6e-32 Score=185.33 Aligned_cols=160 Identities=22% Similarity=0.395 Sum_probs=125.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC------------CEEEEEEECCCCCCCccchh
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
++.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+.+. ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 567999999999999999999999988765 555655433 334443 56899999999999988899
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEE
Q 030133 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999998888887776554333579999999999996432 223322222 123457999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||+++.|++++|++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 82
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.4e-30 Score=176.82 Aligned_cols=163 Identities=14% Similarity=0.219 Sum_probs=121.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....+||+++|++|+|||||++++.++.+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 3578899999999999999999999988766 556665443 3344544 58899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCce-EEEEe
Q 030133 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ 158 (182)
+|+|++++.++.... .|...+ ... ..+.|+++|+||+|+.+.....+.... .........+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEV-KHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH-HHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHH-HHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999888884 454444 332 247899999999999754211111000 00001111233 79999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030133 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++|.|+++++++|.+.+.
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998765
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=3.2e-31 Score=182.42 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=128.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--E--CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
......+||+++|.+|+|||||+++++.+.+.. ..++.+....... . ....+.+|||||++.+...+..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 445778999999999999999999977666555 5666665544433 3 4478899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+..... .........+++++++||++|.|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999888888886643 478999999999996543221 111122234568999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030133 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+...
T Consensus 163 ~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 163 EKPFLWLARKLIGD 176 (221)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987654
No 84
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.1e-31 Score=179.43 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=117.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cccccccccc--eeeEEEECC--EEEEEEECCCCCC-CccchhhhcCCCCe
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGF--NVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
...+||+++|++|+|||||+++|.+.. +....++++. ....+.+.+ ..+.+|||+|++. .......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 466899999999999999999999754 3343344443 334455555 4567899999886 44456677889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||+++..++.....|+..+.......+.|+++|+||+|+.+. ....+.. . .+...+++++++||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~----~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-A----CAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-H----HHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877765433457999999999999642 2222211 1 1122346799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030133 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|++|.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=1.6e-30 Score=174.19 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=122.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 357899999999999999999999887766 555555332 2344444 567799999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCc-eEEEEec
Q 030133 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999988887 4655554332 37899999999998643111111000 0000111223 3899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~~ 181 (182)
|++|.|++++|+++.+.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887653
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3e-30 Score=175.57 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=118.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+.+||+++|++|+|||||++++.++.+.. ..+|+.... ..+... ...+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 345778999999999999999999999888766 555554322 233333 3566699999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---------cccc-cCCceEEE
Q 030133 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKI-KNRQWAIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~ 156 (182)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+...... .... .....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999998887 5555554332 5799999999999965422111111100 0011 12234699
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 030133 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++||++|.|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
No 87
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=1.1e-30 Score=176.62 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=115.0
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEE--E---ECCEEEEEEECCCCCCCccch---hhhc
Q 030133 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV--Q---YNNIKFQVWDLGGQTSIRPYW---RCYF 82 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~---~~~~~~~~~D~~g~~~~~~~~---~~~~ 82 (182)
...+++.+||+++|++|+|||||++++.++.......+.+.....+ . .....+.+|||||++.+.... ..++
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3456789999999999999999999888765443322222222222 2 245799999999999987766 7899
Q ss_pred CCCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCccccc----CCc
Q 030133 83 PNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIK----NRQ 152 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~ 152 (182)
+.+|++++|+|+++. +++.....|+..... ...+.|+++|+||+|+.+... ...+........+. ..+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 999999999999997 455555566655532 235799999999999865211 12332222222222 567
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHH
Q 030133 153 WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++++++||++ .|++++|+.+.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
No 88
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.8e-30 Score=177.64 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=121.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|++... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 567999999999999999999999888765 556665433 233343 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC----------CHHHHHHHhCcccccCCc-eEEEEe
Q 030133 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL----------DDAAVSEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ...+..... ...+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEc
Confidence 99999999998886 5666654332 478999999999986431 111211111 1122 479999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC
Q 030133 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
||++|.|++++|++|.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 89
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=175.91 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=124.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....++|+++|++|+|||||+++|.++.+.. ..+|.+..... +... ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 3567999999999999999999999988765 55665543332 2333 457899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Confidence 99999999888888777765544321 2468999999999997532 222222221 1234579999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030133 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999877543
No 90
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=173.34 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=116.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45678999999999999999999999888766 556665333 3344554 4677999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCc-
Q 030133 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQ- 152 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~- 152 (182)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+. ....+..... ...+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcCC
Confidence 9999999999998886 5666654432 47899999999999642 1111111111 1112
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 153 WAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999988764
No 91
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=172.79 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++.++.+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 467899999999999999999999988766 555555433 3344444 678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---------cccccCCce-EEEEec
Q 030133 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (182)
|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+...... .......+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999998888884 455444332 25789999999999965421111111110 000111223 799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|+++++++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.8e-31 Score=175.83 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|++.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3568999999999999999999999888765 4555542221 1222 3456779999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC------------HHHHHHHhCcccccCCc-eEE
Q 030133 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD------------DAAVSEALELHKIKNRQ-WAI 155 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (182)
+|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... ..+.... ....+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL-----KKLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH-----HHHcCCCEE
Confidence 999999999988887 4655554332 4789999999999864311 1111111 11123 379
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030133 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||++|.|++++|++|.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 93
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=2.2e-29 Score=167.59 Aligned_cols=162 Identities=21% Similarity=0.177 Sum_probs=122.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccc--cceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.++|+++|++|+|||||++++.+..+.. ..++. ......+.+.+..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999988765 33433 4555667778899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--ccC--CceEEEEecCCCCCC
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKN--RQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~~ 165 (182)
+|+|++++..... ...+..+. ..+.|+++|+||+|+.+. ..+++...+.... ... ..++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999988543222 22222221 247899999999999764 3334443332211 111 237899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887654
No 94
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=1.2e-30 Score=177.69 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cccccc--ceeeEEEEC----CEEEEEEECCCCCCCccchhhhcCCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
...++|+++|++|+|||||++++.+. .+.. ..+|++ .....+.+. ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 6654 556665 444556665 56899999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC-C--CCHHHHHHHhCcccccCCceEEEEecC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPG-A--LDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|++++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+ . ...++...... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999888888765433 24789999999999965 2 22333333222 23468999999
Q ss_pred CC-CCCHHHHHHHHHHHHhc
Q 030133 161 IK-GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~~v~~l~~~i~~~~~~ 179 (182)
++ +.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
No 95
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.1e-29 Score=170.18 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=120.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999988766 5566654332 2333 34688999999999999899999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCceEE
Q 030133 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|++++.++... ..|+..+... .++.|+++|+||+|+.+. ...++...... ....+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH----HcCCcEE
Confidence 9999999998888 4565555332 257899999999999642 11122111111 1123579
Q ss_pred EEecCC-CCCCHHHHHHHHHHHHhc
Q 030133 156 FKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~-~~~~v~~l~~~i~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+..
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 689999999999987653
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=178.04 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|+... ...+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 567999999999999999999999888765 45555433 23344443 478999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCce-EEEEec
Q 030133 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........++ +++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999998886 5655554322 57899999999999654211111100 00011112233 899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988755
No 97
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=6e-32 Score=183.28 Aligned_cols=162 Identities=22% Similarity=0.332 Sum_probs=118.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.+||+++|++|+|||||+++|.+..+.. ..++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 567999999999999999999999988766 445544 4455556655 67999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.... ............+++++++||++|.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v---~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVV---DYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCC---CSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccC---CHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999988887775432 357899999999999643211 001111122234567999999999999999
Q ss_pred HHHHHHHHhcC
Q 030133 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|++|.+.+.+.
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99998877643
No 98
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=171.16 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3578999999999999999999999988766 5566654432 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCceE
Q 030133 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+. ...++...... ....++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH----HcCCCE
Confidence 99999999998888 56666554332 47899999999999642 11111111111 111257
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHhc
Q 030133 155 IFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~-~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+ ++.|++++|+.+.+.+..
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999987653
No 99
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=8.3e-30 Score=171.83 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--ccccccccc--ceeeEEEECCE--EEEEEECCCCCC-CccchhhhcCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNNI--KFQVWDLGGQTS-IRPYWRCYFPNTE 86 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~~~--~~~~~D~~g~~~-~~~~~~~~~~~~d 86 (182)
....+||+++|++|+|||||++++.+.. +....++++ .....+.+++. .+.+|||+|++. .......+++.+|
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3567899999999999999999998643 344333343 23344555554 567899999876 4455677788899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||+++..++.....|+..+.......+.|+++|+||+|+.+.. ...+.. . .+...+++++++||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~----~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-A----XAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-H----HHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-H----HHHHhCCceEEeccccCC
Confidence 999999999999999988887776554333578999999999985421 121111 1 112234679999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030133 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
|++++|+.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.6e-30 Score=172.53 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=114.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-ccccccceeeEEEE-------CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
.+||+++|++|+|||||++++.+. .+.. ..+|.+........ ....+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 3444 56677665544332 3568999999999988888888889999
Q ss_pred eEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce----EEEEecCC
Q 030133 87 AVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW----AIFKTCAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (182)
++++|+|++++ .++.....|+..+.... ++.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999988 46788888887775432 4789999999999864311111111111112222233 49999999
Q ss_pred CCC-CHHHHHHHHHHHHhcC
Q 030133 162 KGE-GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~-~v~~l~~~i~~~~~~~ 180 (182)
++. +++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887754
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.5e-28 Score=168.80 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc--ccccceeeEEEECCEEEEEEECCCCCCC---------ccchhhhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 82 (182)
.+.++|+++|++|+|||||+++|++..+.. .. .|.......+......+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 578999999999999999999999988753 22 2344555556667899999999998421 11233456
Q ss_pred CCCCeEEEEEeCCCcccHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccC--CceEEEE
Q 030133 83 PNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKN--RQWAIFK 157 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 157 (182)
..+|++++|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+.... .+...... ..... ..+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 8889999999999987754 223444444332 237899999999999654221 11111111 11112 2378999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|++|.+.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 102
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=5.1e-29 Score=168.20 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=108.6
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCEEEEEEECCC----------CCCCccc
Q 030133 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGG----------QTSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 77 (182)
..+..+.++|+++|++|+|||||++++.++.+.. ..++.+. .......+ .++.+||||| ++.+...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHH
Confidence 3455678999999999999999999999987443 3333332 22223333 3799999999 4445555
Q ss_pred hhhhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE
Q 030133 78 WRCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+..+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+.....................+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 66666655 9999999999887665432 2222222 47899999999999765333322222222122335678
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Q 030133 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++++||++|.|+++++++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 103
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=2.1e-28 Score=162.24 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=111.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
.+..+|+++|++|+|||||++++.+..+. ...+ |.+.....+.+.+..+.+|||||++..... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987643 2222 333455667778888999999998764321 12357
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++. ...|+..+... ...+.|+++|+||+|+.+.. .......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCC
Confidence 8999999999999988765 34565555433 22468999999999985321 111222457899999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030133 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++|++|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999987653
No 104
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=5.7e-31 Score=179.08 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..+.++|+++|++|+|||||++++.++.+.. ..+|+.... ..+.. ....+.+|||||++.+...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445788999999999999999999999887765 444444222 22222 34567799999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---------HHHHHhCcccccCCce-EEE
Q 030133 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---------AVSEALELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (182)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+..... .+............++ +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999888876 4554443321 378999999999996532111 1111111222233344 799
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 030133 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++||++|.|++++|+.|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=1.2e-28 Score=175.95 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=117.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCcc---chhhhcCCCCeEEEE
Q 030133 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (182)
||+++|+.|+|||||++++.++.... ..||++.....+. ...++++|||||++++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999987765443 4577777766552 458899999999999974 368899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccC----CceEEEEecCC
Q 030133 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKN----RQWAIFKTCAI 161 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~ 161 (182)
+|+++. +.....|+..++.. ...++.|+++++||+|+.+... .+++....+...+.. .++++++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555444332 1235799999999999975422 134444444333332 57899999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030133 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+ .+|.++|..+.+.+.+
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999876654
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=3.5e-28 Score=159.17 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
.+|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||+... ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 222 333555666678889999999998873 344567889999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce-EEEEecCCCCCC
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++++|+|++++.+. ...++..++.. .+.|+++|+||+|+.+.. .+ .. ... ..++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~----~~-~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LY----LG-PLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG----CG-GGG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--Hh----HH-HHH-hCCCCCeEEEecccCCC
Confidence 99999999987443 33344444443 468999999999986431 11 11 111 1223 689999999999
Q ss_pred HHHHHHHHHHHHh
Q 030133 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 v~~l~~~i~~~~~ 178 (182)
++++|+++.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999998763
No 107
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=6.5e-29 Score=167.51 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=111.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeE-EEECCEEEEEEECCC----------CCCCccchh
Q 030133 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET-VQYNNIKFQVWDLGG----------QTSIRPYWR 79 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~ 79 (182)
..+....++|+++|++|+|||||++++.+..+....++.+..... ....+.++.+||||| ++.+...+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 344567889999999999999999999998865544544433222 122345788999999 334445555
Q ss_pred hhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEE
Q 030133 80 CYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++.+ |++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+.+........+...........++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 555544 999999999876443222 22222222 2689999999999975544433333333222223456799
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc
Q 030133 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++||++|.|++++|++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998764
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=4.2e-28 Score=174.24 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--ccc--ccccccceeeEEEE-CCEEEEEEECCCCCCC-----ccchhhhcCCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE--VVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~--~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (182)
..+||+++|++|+|||||+++++++. +.. ..+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 56899999999999999999998873 332 66778877777776 6789999999999987 67788889999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCCHHH---HHHHhCcccccCC---ceEEEEe
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALDDAA---VSEALELHKIKNR---QWAIFKT 158 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (182)
|++++|+|++++.++.....|...+... ...++.|+++|+||+|+.+.....+ +............ .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999988886664433221 1125799999999999975211210 1111111222222 4789999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030133 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++ .++.++|..+.+.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 889999988877543
No 109
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=1.9e-27 Score=170.86 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=120.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEEC-CEEEEEEECCCCCCCc----------cc
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYN-NIKFQVWDLGGQTSIR----------PY 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~~ 77 (182)
+++..-.|+++|.+|+|||||+|+|++..+.. ..+ |........... +..+.+|||||+.... ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 45677789999999999999999999988754 222 333344455566 8999999999987654 45
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-CCCCHHHHHHHhCcccccCCceEEE
Q 030133 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-GALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
+..+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 56778899999999999998887776655555433 368999999999996 3333333333222111 1345699
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcC
Q 030133 157 KTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
++||++|.|++++++.+.+.+++.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccC
Confidence 999999999999999999988764
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=6.9e-27 Score=153.92 Aligned_cols=147 Identities=27% Similarity=0.290 Sum_probs=105.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccc--cceeeEEEECCEEEEEEECCCCCCCc------cchhhhcC--CC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (182)
.++|+++|++|+|||||++++.+..+.. ..+++ ......+.+.+..+.+|||||++.+. .....+++ .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 5789999999999999999999876533 34433 34455666778999999999998764 23345554 79
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEecCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+.... ..+++... .+++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEcC
Confidence 9999999998753 33445555533 368999999999984211 11222221 23569999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030133 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=8.5e-27 Score=169.23 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=120.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECCE--EEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|.+|+|||||++++.++.+.. ..+|+... ...+...+. .+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 567999999999999999999999888765 55555433 233444544 55599999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh---------CcccccCCc-eEEEEec
Q 030133 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..... ........+ .+++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999988887 4555553322 378999999999985431111100000 000111223 3899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|++++|+.|.+.+...
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999987654
No 112
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=4e-28 Score=167.07 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=109.6
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cc--cccccc--ceeeEEE-ECCEEEEEEECCCCCCC---------
Q 030133 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VS--TIPTIG--FNVETVQ-YNNIKFQVWDLGGQTSI--------- 74 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~-~~--~~~t~~--~~~~~~~-~~~~~~~~~D~~g~~~~--------- 74 (182)
...+..+.++|+++|.+|+|||||+|+|++... .. ..+.+. .....+. ..+..+.+|||||....
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 344556789999999999999999999999873 22 223222 2233332 24688999999995432
Q ss_pred -ccchhhhcCC---CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-
Q 030133 75 -RPYWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK- 149 (182)
Q Consensus 75 -~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~- 149 (182)
...+..++.. +|++++|+|+.++.+ .....+...+.. .+.|+++|+||+|+.+..........+......
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 3333444443 788999999998644 222223333333 468999999999997542222222222111111
Q ss_pred -----CCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 150 -----NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 -----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...++++++||++|.|+++++++|.+.++..
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3667899999999999999999999988654
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=4.5e-27 Score=168.18 Aligned_cols=157 Identities=17% Similarity=0.087 Sum_probs=113.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCC--------CccchhhhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (182)
+..+|+++|.+|+|||||+|++++..+.. ..+.+ ..........+.++.+|||||... +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999988754 33322 223334455789999999999876 3445567889
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030133 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.+.. ..|+...+.... .+.|+++|+||+|+.+... .+.+..... ....+++++||++|
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALDE 157 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTCH
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH--HHHHHHHHh---cCcCcEEEEeCCCC
Confidence 999999999999875433 345544444321 4789999999999965322 122222211 23357999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030133 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++++.+.+.+++.
T Consensus 158 ~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 158 RQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhcccC
Confidence 99999999999877543
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-28 Score=164.40 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCC-----------CCCCccchhhhcCC-
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (182)
++|+++|++|+|||||++++.+..+.. ..++.+.....+.+. .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999988765 556666555555555 789999999 34445555566665
Q ss_pred CCeEEEEEeCCCcccHHHH-HHHHHH--------HHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC--Cce
Q 030133 85 TEAVIYVVDSSDTDRIQTA-KEEFHA--------ILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN--RQW 153 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~ 153 (182)
++++++|+++.+..++... ..|... +.......+.|+++|+||+|+.+.. ............... ...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence 6666666666666666655 333321 2222223579999999999997543 212222111111100 123
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+++++||++|.|++++|++|.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 589999999999999999999988765
No 115
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=4.2e-27 Score=159.43 Aligned_cols=158 Identities=19% Similarity=0.315 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++++++|++|+|||||++++.+..+.. ..+|.+ +....+.+.+ ..+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 356899999999999999999999988765 556554 3345566655 46788999999988888888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+.+.. ...+.... ....++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 999999998888777777665432 22468999999999996422 22222221 12345679999999999999
Q ss_pred HHHHHHHHHHh
Q 030133 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.|.+.+.
T Consensus 157 ~l~~~l~~~~~ 167 (199)
T 2f9l_A 157 EAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=167.53 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCC---------CCCHHHHHHHHhcC---Cccc-ccccc-cce--eeE----------------EEECCE
Q 030133 14 GNKEARILVLGLD---------NAGKTTILYRLQMG---EVVS-TIPTI-GFN--VET----------------VQYNNI 61 (182)
Q Consensus 14 ~~~~~~v~i~G~~---------~~GKssl~~~l~~~---~~~~-~~~t~-~~~--~~~----------------~~~~~~ 61 (182)
..+.+||+++|.+ |+|||||+++|.++ .+.. ..+|+ +.. ... +.....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4677999999999 99999999999984 4433 44443 211 111 122457
Q ss_pred EEEEEE-----------------------CCCCCCCccchhhhcC---------------------CCCeEEEEEeCCCc
Q 030133 62 KFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTEAVIYVVDSSDT 97 (182)
Q Consensus 62 ~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 97 (182)
.+.+|| ++|++.+...+..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 889999 6667777777777776 79999999999998
Q ss_pred --ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 98 --DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....|+..+.......+.|+++|+||+|+.+. ..+.+..... ....+++++++||++|.|++++|++|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~~~~~~-~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFA-LSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHHHHHHH-HTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHHHHHHH-HhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999988888765433357999999999998542 2222111111 1123567999999999999999999998
Q ss_pred HHh
Q 030133 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=8e-27 Score=163.66 Aligned_cols=149 Identities=20% Similarity=0.224 Sum_probs=110.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--C
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~ 83 (182)
.+.++|+++|++|+|||||+|+|.+..+.. ..|+++ .....+...+..+.+|||||+..+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 457899999999999999999999877643 444444 444455667899999999999877643 24444 6
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEec
Q 030133 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..|+..+.. .+.|+++|+||+|+.+.. ....+... .+++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKH--------LGIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHH--------HCSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHH--------cCCCEEEEE
Confidence 89999999999987543 335555543 378999999999984321 12222222 235799999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 030133 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~ 178 (182)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 118
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=5.3e-26 Score=153.08 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=120.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCE--EEEEEECCCCCCCccchhhhcCCCCeEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++++++|++|+|||||++++.+..+.. ..+|.+. ....+.+.+. .+.+||++|++.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 456899999999999999999999988765 5666654 3455666654 4567999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|..+..++.....|+..+... ...+.|+++++||+|+.+.. ........ ....++.++++||+++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999988877777776655332 22468999999999986421 22222211 12345679999999999999
Q ss_pred HHHHHHHHHH
Q 030133 168 EGMDWLSNTL 177 (182)
Q Consensus 168 ~l~~~i~~~~ 177 (182)
++++.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=2.2e-27 Score=166.29 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCcc----------chhhhc--
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|++|+|||||+|+|.+..... ..|+++ .....+.+.+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 379999999999999999999887543 445444 45566677888999999999987764 345566
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEe
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..+|++++|+|+++.++... +...+. . .+.|+++|+||+|+.+.. ....+... .+++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~---l~~~l~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLY---LTSQLF-E---LGKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHH---HHHHHT-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHH---HHHHHH-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEE
Confidence 89999999999998644332 222222 2 378999999999984321 12222222 24579999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 030133 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~ 176 (182)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=1.1e-26 Score=174.15 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=114.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCC----------Cccch-h
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTS----------IRPYW-R 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~-~ 79 (182)
+..++|+++|.+|+|||||+|++++.... ...+ |.+.....+.+.+..+.+|||||+.. +.... .
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999998764 2333 33344556777888999999999732 22222 2
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030133 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+.+... .+++.+.+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 467889999999999998877664 35444432 4799999999999975433 2334333333333334568999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 121
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=9.1e-26 Score=151.37 Aligned_cols=151 Identities=27% Similarity=0.290 Sum_probs=111.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCc------cchhhhcC--
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP-- 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (182)
-+.++|+++|++|+|||||++++.+..+.. ..++++ .....+.+.+..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 357899999999999999999999876543 444433 4455666788999999999998774 33455553
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEec
Q 030133 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.++++++|+|..+ +.....|+..+.. .+.|+++|+||+|+.... ...++... .+++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEE
Confidence 5899999999976 4455556655543 478999999999984321 12222222 234699999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030133 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|+++.|++++|+++.+.+.+.
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987654
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=1.6e-27 Score=168.75 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc----------hhhhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 82 (182)
+.++|+++|++|+|||||+|+|.+..+.. ..++++ .....+.+.+..+.+|||||+..+... +..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 36899999999999999999999987543 444443 445556667889999999998876621 22232
Q ss_pred --CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEE
Q 030133 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+|++++|+|+++.++... +...+.. .+.|+++|+||+|+.+... ...+... .+++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEE
Confidence 78999999999998644333 3333322 2689999999999843211 1222222 235799
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc
Q 030133 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++||++|.|++++++.|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999886653
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=9.4e-26 Score=169.87 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=98.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|.+|+|||||+|+|.+... ....+ |.+.....+.+.+.++.+|||||+..+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998863 33333 3445566777899999999999987655333 4467
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++.... ....++... .+.|+++|+||+|+.+...... +.+... ...+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELT-EIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhH-HHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECC
Confidence 8999999999999988764322 222222222 2689999999999976532211 111111 114699999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030133 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999886
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=7.8e-27 Score=164.63 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-cccccccccceeeEEEEC-CEEEEEEECCCCCCCc------cchhhhcC--CC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (182)
..++|+++|++|+|||||+|+|.+.. +....|+++.......+. +..+.+|||||+..+. ..+..++. .+
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 35799999999999999999999876 333555444433333333 6789999999998875 33455554 69
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceEEEEecCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.++ ...|...+.. .+.|+++|+||+|+.+. .....+... .+++++++||+
T Consensus 82 d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~ 146 (272)
T 3b1v_A 82 DSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYH--------LGVPVVATSAL 146 (272)
T ss_dssp SEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBTT
T ss_pred CEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHH--------cCCCEEEEEcc
Confidence 99999999988643 3344444433 47899999999998421 112222222 23579999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030133 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 147 ~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTBSHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988654
No 125
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=1.5e-25 Score=166.55 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=116.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccc-------------------ceeeEEEECCEEEEEEECC
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIG-------------------FNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~-------------------~~~~~~~~~~~~~~~~D~~ 69 (182)
...+.++|+++|++|+|||||+++|.+..... ...+.+ ............+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34678999999999999999999998854322 000000 0000001122789999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc--c
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--K 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~ 147 (182)
|++.+...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.+.....+..+.+... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987667777666544322 235899999999997543222222222111 1
Q ss_pred ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.....++++++||++|.|+++++++|.+.++..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 123467899999999999999999999877644
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.93 E-value=6.8e-26 Score=170.80 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCC----------CCCCccchh-
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (182)
...++|+++|.+|+|||||+|++.+.... ...+ |.+.....+...+.++.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 46789999999999999999999987632 2333 33345566777889999999999 444444333
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030133 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.+ ....++...+.. .+.|+++|+||+|+.+... .++..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 46788999999999998754 233333333333 4799999999999975432 2344444333322334568999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 127
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=4.4e-25 Score=165.65 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCC---------ccchhhhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|+|||||+|+|.++... ...| |.+.....+.+.+..+.+|||||.+.. ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999988743 3333 344667778888999999999997642 2345678899
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce-EEEEecCCCC
Q 030133 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
+|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+.. ..+...... . .++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~----~-lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELY----S-LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG----G-GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH----h-cCCCCEEEEeccCC
Confidence 99999999998875533 2344444433 368999999999974210 111101111 1 122 4799999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030133 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|+.++++.+.+.+++
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988864
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.93 E-value=5.6e-26 Score=168.58 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=111.0
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECC-EEEEEEECCCCCCCccc-------h
Q 030133 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY-------W 78 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~ 78 (182)
..+..+.++|+++|++|+|||||++++++..+.. ...|.......+.+.. .++.+|||||++.+... +
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 3455778999999999999999999999887642 2334456666677654 49999999999876544 3
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030133 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..++..+|++++|+|+... .....|+..+.. .+.|+++|+||+|+.+.... +..+.+. ...+++++++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEE
Confidence 5578899999999999332 334445554433 27899999999999765444 2223332 2345689999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030133 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++|.|++++++.|.+.+++
T Consensus 176 SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999998843
No 129
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=4.5e-25 Score=166.32 Aligned_cols=150 Identities=24% Similarity=0.335 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCC-CCcc--------chhhhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~~ 82 (182)
..++|+++|.+|+|||||+|+|.+.+. ....+ |.+.....+.+.+.++.+|||||.. .... ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 348999999999999999999998764 33333 4456677788899999999999987 5432 234577
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++.... .+ +.+ .+.|+++|+||+|+.+....+++..... ..++++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999987765432 22 222 3689999999999975544444433221 224589999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030133 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998654
No 130
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=6.2e-26 Score=174.09 Aligned_cols=157 Identities=19% Similarity=0.266 Sum_probs=109.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--------E----CCEEEEEEECCCCCCCccchhh
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+.+||+++|.+|+|||||++++.+..+.. ..+|.+....... . ....+.+|||||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999999999988766 6667766555331 1 2589999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEe
Q 030133 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++++|+|+++.+. ...|+..+.... .+.|+++|+||+|+.+... .++...... ..+++++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 9999999999999987643 445555554332 3689999999999965322 333333322 233469999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC
Q 030133 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
||++|.|++++++.+.+.+.+.
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=4.3e-24 Score=151.08 Aligned_cols=149 Identities=23% Similarity=0.230 Sum_probs=110.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCcc------chhhhc--CCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~ 85 (182)
.++|+++|++|+|||||+|++.+..+.. ..++++ .....+.+.+..+.+|||||+..+.. .+..++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 5799999999999999999999987643 444444 44555667888999999999987765 445555 789
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceEEEEecCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.. ....++..+... ...|+++|+||+|+.+. .....+...+ +++++++||+
T Consensus 83 d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGG
T ss_pred cEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeC
Confidence 9999999999853 333444444432 23899999999997321 1222333222 3579999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030133 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++++++.+.+.+..
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987754
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=3e-24 Score=157.26 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=115.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 82 (182)
...++++++|.+|+|||||+|++.+..+.. ...|.......+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 567899999999999999999999887432 23344555566666788999999999754321 122344
Q ss_pred CCCCeEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030133 83 PNTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.. ++.....|+..+.... .+.|+++|+||+|+.+.....+..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 6777777777765532 278999999999986432111121111 123457999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030133 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|+++++++|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 133
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.9e-26 Score=158.25 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=94.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC---
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN--- 84 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 84 (182)
....+.++|+++|++|+|||||++++.+..+.. ..++.+... ....+.+|||||++.+...+..+++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 345678999999999999999999999887654 233333222 56789999999999998888888876
Q ss_pred -CCeEEEEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCC
Q 030133 85 -TEAVIYVVDSS-DTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 85 -~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~ 135 (182)
+|++++|+|++ ++.++.....|+..++.... ..+.|+++|+||+|+.+...
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 88889989888888876432 25799999999999976654
No 134
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=3.2e-24 Score=153.59 Aligned_cols=157 Identities=19% Similarity=0.101 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCC---------CCccchhhhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQT---------SIRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 82 (182)
+..+|+++|++|+|||||+|++++..+.. ..+ |.......+......+.+|||||+. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 45589999999999999999999988643 222 2223334455678899999999987 2334456678
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|+.+ -+ ....++...+.. .+.|+++++||+|+... ...+...............++++||++
T Consensus 87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WT--PDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCEEEEEEEEETTC-CC--HHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred hcCCEEEEEEeCCC-CC--HHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 89999999999977 32 333344444332 46899999999998651 223322222111111123699999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030133 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
+.|++++++.+.+.+++.
T Consensus 159 g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHhCCcC
Confidence 999999999999876643
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=4.7e-25 Score=159.82 Aligned_cols=159 Identities=24% Similarity=0.265 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCC----CCCccchhhh---cCCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCY---FPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~----~~~~~~~~~~---~~~~d 86 (182)
.+|+++|.+|+|||||++++++..+.. ..+|...+...+.+.+ ..+.+|||||. +....+...+ +..++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 468999999999999999998876432 2345566666677754 89999999994 2333333334 34599
Q ss_pred eEEEEEeCCC---cccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 87 AVIYVVDSSD---TDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++ ..++.....|..++..... ..++|+++|+||+|+.+. .+..+.+.... ....+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l--~~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEKL--TDDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHC--CSCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC---HHHHHHHHHHh--hcCCCEEEEECCC
Confidence 9999999998 6778887777777655321 257899999999998643 12111221111 1115699999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030133 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~~ 181 (182)
+.|+++++++|.+.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCC
T ss_pred CcCHHHHHHHHHHHHhhCc
Confidence 9999999999999887643
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=1.6e-24 Score=157.59 Aligned_cols=133 Identities=22% Similarity=0.377 Sum_probs=106.2
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhcccc
Q 030133 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+++....+.++...+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35566667777789999999999999999999999999999999999998 56799999999999876666
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHHHHHHHhCc-----ccc-cCCceEEEEecCCCCCCHHHHHHHH
Q 030133 117 KGAVALIFANKQDLPG-----------------ALDDAAVSEALEL-----HKI-KNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~-----------------~~~~~~~~~~~~~-----~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
.+.|+++++||+|+.+ ....++....... ... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 1233333333321 000 1356889999999999999999999
Q ss_pred HHHHhc
Q 030133 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=3e-24 Score=161.12 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCccc------------hh
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (182)
..++++++|++|+|||||+|++.+.... ...+ |.+.....+.+.+..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999998753 2333 333555667778889999999997433211 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030133 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++++|+.++.+... .++...+.. .+.|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 45677899999999998766543 223333332 4789999999999965422 3333333322222334567999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030133 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=4.6e-24 Score=158.77 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c-ccc--cccceeeEEEE---------------C--------CEEEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV---S-TIP--TIGFNVETVQY---------------N--------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~---~-~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (182)
....++|+++|+.++|||||+++|.+.... . ..+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999999865422 1 222 44433322221 1 16899
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030133 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVS 140 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~ 140 (182)
+|||||++.+...+......+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888999999999999764223333333322 221 2358999999999975432 13333
Q ss_pred HHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 141 EALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+.+... ....++++++||++|.|+++++++|.+.++..
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 333211 12457899999999999999999999877643
No 139
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.92 E-value=9.8e-24 Score=151.43 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=107.7
Q ss_pred cccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhccc
Q 030133 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|+++....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34667777778889999999999999999999999999999999999654 67788899999999988777
Q ss_pred cCCCeEEEEEeCCCCCC------------------CCCHHHHHHHhC-----cccccCCceEEEEecCCCCCCHHHHHHH
Q 030133 116 LKGAVALIFANKQDLPG------------------ALDDAAVSEALE-----LHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
..+.|+++++||+|+.+ ....++....+. ........+.+++|||+++.||+.+|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 77899999999999843 122233332221 1223346688999999999999999999
Q ss_pred HHHHHhcC
Q 030133 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99887653
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.92 E-value=1.7e-24 Score=162.49 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccc--ccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|++|+|||||+|+|.+..+. ...++ .+.....+...+.++.+|||||.......+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999987543 33333 335556677889999999999976544332 3367
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030133 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 88999999999998866544 2333333 236999999999996542111 1111 11345799999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030133 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=5.2e-25 Score=165.12 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccc--c--cccceeeEEEECCEEEEEEECCCCC--------CCccchhhhcCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI--P--TIGFNVETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+..+.... + |.+..+..+.+.+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987765422 2 2233344444567889999999986 3455567788999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+.. ..++..++.. .+.|+++|+||+|+.+... ..... ......+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~~~-~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIYDF-YSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-----------CCCSS-GGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh------hHHHH-HHcCCCCeEEEeCcCCCC
Confidence 9999999999886643 3455555543 4789999999999864310 11111 111112589999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030133 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
+.++++++.+.+++
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999998864
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.91 E-value=1.5e-24 Score=164.12 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=111.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC----c---cc---ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE----V---VS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.++|+++|++++|||||+++|.+.. . .. ...|.+.....+.+.+..+.+|||||++.+...+..++..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57899999999999999999999876 2 11 22355556666777889999999999999888888899999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc---cCCceEEEEecCCC
Q 030133 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---KNRQWAIFKTCAIK 162 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~ 162 (182)
|++++|+|++++.. ....+.+..+ .. .+.|+++++||+|+.+....+++.+.+..... .....+++++||++
T Consensus 98 D~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 99999999988532 2223333222 22 36788999999999753222222222221110 11256899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030133 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998765
No 143
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=3.7e-24 Score=159.42 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c-ccc--cccceeeEEEEC-----------------------CEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV---S-TIP--TIGFNVETVQYN-----------------------NIKF 63 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~---~-~~~--t~~~~~~~~~~~-----------------------~~~~ 63 (182)
..+..++|+++|++++|||||+++|.+.... . ..+ |+...+....+. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3466789999999999999999999865321 1 223 444443333220 1689
Q ss_pred EEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHH
Q 030133 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~ 139 (182)
.+|||||++.+.......+..+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999988877777888899999999999764223333333322 221 23589999999999753211 122
Q ss_pred HHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+.+... ....++++++||++|.|+++++++|.+.++..
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 2222211 12457899999999999999999999877643
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.91 E-value=1.6e-23 Score=159.52 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=88.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC------------------Cccc-------ccccccceeeEEEECCEEEEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++|+|||||+++|+.. .... ...|.......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45679999999999999999999621 1111 1224445566777889999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+...+..+++.+|++++|+|++++....... ++..+.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876654443 3333322 46899999999999654
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=3.7e-25 Score=168.07 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=114.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++..+|+++|++|+|||||+++|.+..+.. ..+ |..+....+.. .+..+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 356789999999999999999998776544 333 33333334433 45689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030133 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|++++...+.. ..+..... .+.|+++++||+|+.+... ..++.............++++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999987654333 23333322 4689999999999964321 12222221111111235789999999999999
Q ss_pred HHHHHHHHHHh
Q 030133 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988754
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.91 E-value=1.8e-23 Score=152.91 Aligned_cols=160 Identities=21% Similarity=0.146 Sum_probs=106.9
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCC---------CccchhhhcC
Q 030133 17 EAR-ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFP 83 (182)
Q Consensus 17 ~~~-v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 83 (182)
.++ |+++|.+|+|||||+|++.+..+.. ..+|.+.....+.+.+..+.+|||+|.-. +.. ....+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHHHHH
Confidence 455 9999999999999999999887532 34566677778888889999999999622 111 223468
Q ss_pred CCCeEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh-Cccccc-CCceEEEEec
Q 030133 84 NTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL-ELHKIK-NRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~S 159 (182)
.+|++++|+|++++. ..... ..+..++......+.|+++|.||+|+.+.. ........ ...... ....+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 899999999998875 33332 233344444444578999999999997543 22211111 000001 2245689999
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 030133 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~ 179 (182)
|+++.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987764
No 147
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.91 E-value=2.3e-23 Score=151.97 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=95.9
Q ss_pred ccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhccccCC
Q 030133 49 IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
+++....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......+
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 345555666788999999999999999999999999999999999999 6789999999999987766678
Q ss_pred CeEEEEEeCCCCCC------------------CCCHHHHHHHh-----Cccccc-CCceEEEEecCCCCCCHHHHHHHHH
Q 030133 119 AVALIFANKQDLPG------------------ALDDAAVSEAL-----ELHKIK-NRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 119 ~~iivv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
.|+++++||+|+.+ ....++..... ...... ...+.+++|||+++.||+++|+++.
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 99999999999852 12333433332 111111 3467899999999999999999998
Q ss_pred HHHhc
Q 030133 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+..
T Consensus 349 ~~i~~ 353 (362)
T 1zcb_A 349 DTILH 353 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=1.3e-23 Score=157.46 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=104.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc--------------------------------ccccccceeeEEEEC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++|+|||||+++|++..- .. ...|.+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45678999999999999999999964421 00 112344445556667
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccH------HHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 132 (182)
+..+.+|||||++++...+..++..+|++++|+|++++... ....+.+... .. .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 88999999999999999999999999999999999986421 1223222222 22 3455 999999999854
Q ss_pred CCC----HHHHHHHh----Cccccc-CCceEEEEecCCCCCCHHHHHH
Q 030133 133 ALD----DAAVSEAL----ELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 133 ~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
... .+++...+ ...... ...++++++||++|.|+.++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 221 11222211 111111 1257899999999999998554
No 149
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=2e-23 Score=150.28 Aligned_cols=132 Identities=26% Similarity=0.358 Sum_probs=104.2
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 030133 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+++....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3556677777778899999999999999999999999999999999998 678899999999999887777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCccc-----------ccC-----------CceEEEE
Q 030133 117 KGAVALIFANKQDLPGA-----------------LDDAAVSEALELHK-----------IKN-----------RQWAIFK 157 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~~ 157 (182)
.+.|+++++||+|+.+. ...++....+.... ... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998431 11222222221111 111 4588999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh
Q 030133 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
|||++..||+.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=4.9e-23 Score=143.67 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=103.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-c----cccccceeeEEEECCEEEEEEECCCC--------CCCccchh
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQ--------TSIRPYWR 79 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~ 79 (182)
.....++|+++|.+|+|||||+|++++..+.. . ..|...........+..+.+|||||. +.+.....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 34678999999999999999999999988654 1 13444556667778999999999996 33333333
Q ss_pred hhc----CCCCeEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH----HhCcccccC
Q 030133 80 CYF----PNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE----ALELHKIKN 150 (182)
Q Consensus 80 ~~~----~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~----~~~~~~~~~ 150 (182)
.++ ..+|++++|+|+++.... .....++.+... ....+.|+++++||+|+.+....+.+.. .+... ...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l-~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL-VAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH-HHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH-HHH
Confidence 333 899999999999853211 112233333322 1123689999999999965422222211 01100 111
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHHHHHhcC
Q 030133 151 RQWAIFKTCAIK-----GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~-----~~~v~~l~~~i~~~~~~~ 180 (182)
.+..+...++.. +.++++|++.|.+.+.++
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 222344444333 579999999999988754
No 151
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=1.7e-23 Score=147.23 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=104.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc---cccceeeEEEECCEEEEEEECCCCCCCccc----------
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRPY---------- 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------- 77 (182)
+..+.++|+++|++|+|||||+|++++..... ..+ |.......+.+.+..+.+|||||+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34577999999999999999999999877332 222 334455566778899999999997654322
Q ss_pred -hhhhcCCCCeEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEEe-CCCCCCCCCHHH---------HHHHhCc
Q 030133 78 -WRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFAN-KQDLPGALDDAA---------VSEALEL 145 (182)
Q Consensus 78 -~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~---------~~~~~~~ 145 (182)
...+++.+|++++|+|+++.... .....++....... ...|.++++| |+|+... .... +......
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 23367899999999999863221 12223333332211 1345666666 9999743 2222 1111111
Q ss_pred ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.......+..+++||+++.|++++|+.|.+.+...
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 11000001128899999999999999999988764
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=1.4e-23 Score=153.78 Aligned_cols=148 Identities=10% Similarity=0.062 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030133 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|+ ....|++.....+...+..+.+|||||++++.......++.+|++++|+| .++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 89999999999999999998 33455666666666678899999999999998888888899999999999 544
Q ss_pred cHHHHHHHHHHHHhccccCCCeE-EEEEe-CCCCCCCCCHHHHHHHhCccc--ccCCceEEEE--ecCCC---CCCHHHH
Q 030133 99 RIQTAKEEFHAILEEEELKGAVA-LIFAN-KQDLPGALDDAAVSEALELHK--IKNRQWAIFK--TCAIK---GEGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~Sa~~---~~~v~~l 169 (182)
......+++..... .+.|. ++++| |+|+ +....+++.+.+.... .....+++++ +||++ +.|++++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 34455555544422 25666 99999 9998 4321122112221111 1124578999 99999 9999999
Q ss_pred HHHHHHHHh
Q 030133 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
++.|.+.++
T Consensus 171 ~~~l~~~~~ 179 (370)
T 2elf_A 171 KARINEVAE 179 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998765
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=6.7e-23 Score=153.61 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=105.3
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---ccc---------------------------------ccccc
Q 030133 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV---VST---------------------------------IPTIG 50 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~---~~~---------------------------------~~t~~ 50 (182)
.++.+......++|+++|++++|||||+++|++... ... ..|..
T Consensus 14 ~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 14 AYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp --CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred HHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Confidence 344444445678999999999999999999976531 000 01222
Q ss_pred ceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030133 51 FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 51 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.....+......+.+|||||++.+...+..++..+|++++|+|++++.. ....+++... ... ...|+++|+||+|+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~~--~~~~iIvviNK~Dl 169 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SLL--GIKHIVVAINKMDL 169 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HHT--TCCEEEEEEECTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEEcCcC
Confidence 2334455577899999999999998888888999999999999998753 3333444333 221 12479999999999
Q ss_pred CCCCCH--HHHHHHhCccc--cc--CCceEEEEecCCCCCCHHHH
Q 030133 131 PGALDD--AAVSEALELHK--IK--NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 131 ~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~v~~l 169 (182)
.+.... .++........ .. ...++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 753211 11222221111 11 23478999999999999874
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=2e-23 Score=155.22 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=112.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------ccccccceeeEEEECCEEEEEEECCCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
....++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356789999999999999999999873 2111 11133333334445678999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-HH----HHHHHhCccc
Q 030133 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALD-DA----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 147 (182)
+...+..++..+|++++|+|++++.. ....+++..+.. .+.| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888889999999999999998754 344445544322 3677 899999999974211 11 1112221111
Q ss_pred ccCCceEEEEecCCCCCC------------------HHHHHHHHHHHHhcC
Q 030133 148 IKNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~~~ 180 (182)
.....++++++||++|.| +.++++.|.+.++..
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 112346899999999987 888999888877643
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.7e-24 Score=142.55 Aligned_cols=125 Identities=28% Similarity=0.409 Sum_probs=95.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC----C
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.... +....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-----CCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-----ecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4678899999999999999999999887544 22222221 256788999999999988887777765 8
Q ss_pred CeEEEEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030133 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
|++++|+|++ +..++.....|+..++.... ..+.|+++|+||+|+.+.....++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 88888888888888765432 2579999999999998766665555444
No 156
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=1.2e-22 Score=156.23 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----------------ccccccceeeEEEEC-----CEEEEEEECCCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----------------TIPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
++..+++++|+.++|||||+++|+.. .+.. ...|+......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999752 1110 001222223344443 378899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030133 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
..+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++.+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 999988888999999999999999987766655554433 2 478999999999997643 333333332211 112
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
..+++++||++|.|+++++++|.+.++..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 22489999999999999999999988754
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=6.6e-23 Score=157.85 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=108.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-c----------cccccceeeEEEEC-----CEEEEEEECCCCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE--VV-----S-T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..+|+++|+.++|||||+++|+... +. . . ..|.......+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46789999999999999999997521 11 0 0 01222223344443 3789999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030133 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
.+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++...+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 99999999999999999999999987766665554433 2 368999999999997653 333333332111 1112
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 153 WAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++++||++|.|+++++++|.+.++..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 2489999999999999999999988754
No 158
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=1.2e-23 Score=158.62 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccc----ceeeEEEECCEEEEEEECCC--------CCCCccchhhhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGG--------QTSIRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~ 83 (182)
...+|+++|.+|+|||||+|+|.+..+....++.+ .....+.+.+..+.+||||| ++.+...+..+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 45799999999999999999999887654222222 33334444678999999999 4455566777889
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030133 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|..++.+ ....++..++.. .+.|+++|+||+|+.+.. .. ......... ..++++||++|
T Consensus 102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~----~~e~~~lg~-~~~~~iSA~~g 169 (456)
T 4dcu_A 102 EADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN----IYDFYSLGF-GEPYPISGTHG 169 (456)
T ss_dssp HCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC---------------CCSGGGSS-SSEEECCTTTC
T ss_pred hCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hh----HHHHHHcCC-CceEEeecccc
Confidence 9999999999987633 444566666554 578999999999986331 11 111111111 13579999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030133 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|+.++++.+.+.+..
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887753
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=3.6e-23 Score=156.89 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc--------------------------------ccccccceeeEEEEC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++|+|||||+++|++... .. ...|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35679999999999999999999975511 00 122444455556667
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHH-----HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT-----AKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
+..+.+|||||++++...+..++..+|++++|+|++++.+... .......+.... ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8899999999999999999999999999999999998743221 122222222221 235699999999997532
Q ss_pred C--HHHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030133 135 D--DAAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 135 ~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
. .+++...+. ........++++++||++|.|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 122222221 111122367899999999999874
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=2.9e-23 Score=153.93 Aligned_cols=160 Identities=15% Similarity=0.087 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------ccc------------ccccccceeeEEEECCEEEEEEECCCCCCCcc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..++|+++|++++|||||+++|.+.. +.. ...|++.....+......+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 110 11122233333444678999999999999888
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccccC
Q 030133 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 150 (182)
.+..++..+|++++|+|++++... ...+++..+ .. .+.| +++++||+|+.+.... + ++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888899999999999999987543 333344332 22 3677 7899999999742111 1 2222222111112
Q ss_pred CceEEEEecCCCCCC----------HHHHHHHHHHHHhcC
Q 030133 151 RQWAIFKTCAIKGEG----------LFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~~~~~ 180 (182)
..++++++||++|.| +.++++.|.+.++..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 346899999999764 899999999887643
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.89 E-value=9e-23 Score=157.20 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEE----------------ECCEEEEEEECCCCCCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQ----------------YNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 74 (182)
+..+|+++|++|+|||||++++.+..+....+ +.+....... +....+.+|||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999998765443222 2222211110 11236999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HH---
Q 030133 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA--- 137 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~--- 137 (182)
...+..+++.+|++++|+|++++...+. ...+..+ .. .+.|+++++||+|+..... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT-~e~l~~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhH-HHHHHHH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 9988888999999999999998532222 2222222 22 4789999999999964211 01
Q ss_pred --------HHHHHhCcccc----------cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 138 --------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 --------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++...+..... ....++++++||++|.|+++++++|...++
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111000 134568999999999999999999998765
No 162
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=3.3e-23 Score=150.60 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=91.8
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
...+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.......+.|+++|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 478999999999999999999999999999999998 7788999999999988766557899999999999
Q ss_pred CCCC----CC-------------------HHHHHHHhCccc------c--c---CCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 130 LPGA----LD-------------------DAAVSEALELHK------I--K---NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 130 ~~~~----~~-------------------~~~~~~~~~~~~------~--~---~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+.+. .. .++......... . . ...+.+++|||+++.||+++|+.+.+
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 8421 00 111111111100 0 0 23466799999999999999999988
Q ss_pred HHhc
Q 030133 176 TLKS 179 (182)
Q Consensus 176 ~~~~ 179 (182)
.+..
T Consensus 342 ~I~~ 345 (354)
T 2xtz_A 342 TLRR 345 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=5.8e-24 Score=160.35 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=108.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++..+|+++|++++|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.+..++...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998755443 222 33333334444667899999999999999998899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc--ccc--CCceEEEEecCCCCCCHH
Q 030133 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--KIK--NRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~~~v~ 167 (182)
+|++++... .....+... . ..+.|+++++||+|+.+... +++...+... ... ...++++++||++|.|++
T Consensus 82 Vda~~g~~~-qT~e~l~~~-~---~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMP-QTIEAIQHA-K---AAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCT-TTHHHHHHH-H---HTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccH-HHHHHHHHH-H---hcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999885322 122222222 1 14689999999999964321 1121121111 001 124789999999999999
Q ss_pred HHHHHHHH
Q 030133 168 EGMDWLSN 175 (182)
Q Consensus 168 ~l~~~i~~ 175 (182)
+++++|..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999875
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.6e-23 Score=159.12 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=104.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------ccccccceeeEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++..... ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 467899999999999999999998663211 1224445566677788
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030133 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
..+.+|||||++.+...+..+++.+|++|+|+|++++.. .......+ .+.... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHc--CCCeEEEEEecccccchh
Confidence 899999999999999999999999999999999987420 01222221 222221 235699999999997532
Q ss_pred C--HHHHHHHh----CcccccCCceEEEEecCCCCCCHHHH
Q 030133 135 D--DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
. ..++...+ .........++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11122222 11111223578999999999999865
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.88 E-value=3.3e-23 Score=155.26 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=100.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++. .+.. ...|++.....+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999864 2221 1124444455566678
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHH---HHHHhccccCC-CeEEEEEeCCCCCCCC-C
Q 030133 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEELKG-AVALIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~-~~iivv~nK~D~~~~~-~ 135 (182)
..+.+|||||++++...+..++..+|++++|+|+++ .+++....|. ...+......+ .|+++++||+|+.+.. .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 899999999999999999999999999999999998 4454322211 11111111123 4689999999997531 1
Q ss_pred H---HHHHHHhC----cccccCCceEEEEecCCCCCCHHHH
Q 030133 136 D---AAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~---~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
. +++.+.+. ........++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 12222221 1111122478999999999998743
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=3.5e-23 Score=146.57 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=88.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c-------cccccceeeEEEE--CC--EEEEEEECCCCCCC-------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T-------IPTIGFNVETVQY--NN--IKFQVWDLGGQTSI------- 74 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~------- 74 (182)
...++|+++|.+|+|||||+|++++..... . .+|++........ .+ ..+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 347899999999999999999988766443 2 4566665555544 22 48999999997322
Q ss_pred ccch-------hhhc-------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030133 75 RPYW-------RCYF-------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
.... ..++ .++|+++++++............++..+ .. +.|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2211 1222 2378999999877632222223333333 22 68999999999986432
Q ss_pred CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
........+.. .....+++++++||+++.|++++++.|.+.++
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 22222222211 11234566899999999999999999988654
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=5.3e-22 Score=137.93 Aligned_cols=161 Identities=13% Similarity=0.089 Sum_probs=100.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc----ccccceeeEEEECCEEEEEEECCCCCC-----------Ccc
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TI----PTIGFNVETVQYNNIKFQVWDLGGQTS-----------IRP 76 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~ 76 (182)
.....++|+++|++|+|||||+|++++..+.. .. .|.......+.+.+..+.+|||||... +..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 44678999999999999999999999987654 22 234455566777889999999999542 333
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCHH--------HHHHHhCccc
Q 030133 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDA--------AVSEALELHK 147 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~--------~~~~~~~~~~ 147 (182)
.+..+++.+|++++|+|+++... ....++..+..... ....|+++|+||+|+.+..... .+.....
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~--- 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD--- 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH---
Confidence 34556678899999999976533 22233333322111 1235899999999986543222 1111111
Q ss_pred ccCCceEEEEecCCCC-----CCHHHHHHHHHHHHhcC
Q 030133 148 IKNRQWAIFKTCAIKG-----EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~-----~~v~~l~~~i~~~~~~~ 180 (182)
..+..++.+++..+ .++.++++.+.+.+.++
T Consensus 180 --~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 180 --IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp --HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 11223555555533 68999999988877653
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=9.5e-23 Score=146.04 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=101.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc----------------------ccce-------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGFN------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~------------- 52 (182)
....+|+++|.+|+|||||+|+|++..+.+ ..|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 467799999999999999999999988642 1222 1100
Q ss_pred --------e--eE--EEE-CCEEEEEEECCCCCC-------------CccchhhhcCCCCeEE-EEEeCCCcccHHHHHH
Q 030133 53 --------V--ET--VQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVI-YVVDSSDTDRIQTAKE 105 (182)
Q Consensus 53 --------~--~~--~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (182)
. .. +.. ....+.+|||||... +...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 00 111 247899999999642 2345567788888766 7999987654433323
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcc-cccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030133 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
++..+ . ..+.|+++|+||+|+.+... ..+... ... .......+++++||++|.|++++++.+.+.
T Consensus 184 ~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHh--CCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 2 24689999999999975432 112111 111 111123579999999999999999998763
No 169
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=1.9e-22 Score=148.29 Aligned_cols=128 Identities=25% Similarity=0.349 Sum_probs=97.8
Q ss_pred eeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhccccCCCeE
Q 030133 52 NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKGAVA 121 (182)
Q Consensus 52 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~i 121 (182)
....+.+.+..+++|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......+.|+
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 334455577899999999999999999999999999999999999 8899999999999987655578999
Q ss_pred EEEEeCCCCCCC-----C------------------------C---HHHHHHHhCccc--------ccCCceEEEEecCC
Q 030133 122 LIFANKQDLPGA-----L------------------------D---DAAVSEALELHK--------IKNRQWAIFKTCAI 161 (182)
Q Consensus 122 ivv~nK~D~~~~-----~------------------------~---~~~~~~~~~~~~--------~~~~~~~~~~~Sa~ 161 (182)
++|+||+|+.+. . . ..+......... .....+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 999999998321 0 0 011111110000 01135778999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030133 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
++.||+++|+.+.+.+..
T Consensus 368 d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999998887653
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.87 E-value=3.1e-23 Score=156.47 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------cccccccceeeEEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMG--EVV--------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 58 (182)
.....++|+++|++++|||||+++|+.. .+. ....|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 4467789999999999999999999642 111 012344455556666
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q 030133 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQ---TAKEEFHAILEEEELKGAV-ALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 131 (182)
.+..+.+|||||++.+...+..++..+|++|+|+|++++. +|+ .....+... . ..+.| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~---~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-R---TQGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-H---HTTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-H---HcCCCEEEEEEECccCC
Confidence 7899999999999999988888999999999999999862 111 122222211 1 13566 99999999996
Q ss_pred CCC-CH---HH----HHHHhCcc-ccc-CCceEEEEecCCCCCCHHHHH
Q 030133 132 GAL-DD---AA----VSEALELH-KIK-NRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 132 ~~~-~~---~~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+.. .. ++ +...+... ... ...++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 422 11 11 22222111 000 125789999999999988654
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.87 E-value=4.1e-24 Score=164.97 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=90.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------cccccccceeeEEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~ 58 (182)
.....++|+++|++|+|||||+++|++.... ....|.......+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456789999999999999999999642100 011133344444555
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q 030133 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAV-ALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 131 (182)
.+..+.+|||||++.+...+..++..+|++|+|+|++++. .+ ......+. ++.. .+.| +++|+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEeccccc
Confidence 6789999999999999988888999999999999998642 11 11222222 2222 2454 99999999996
Q ss_pred CCCC--HH----HHHHHh-CcccccCCceEEEEecCCCCCCHH--------------HHHHHHHHHHh
Q 030133 132 GALD--DA----AVSEAL-ELHKIKNRQWAIFKTCAIKGEGLF--------------EGMDWLSNTLK 178 (182)
Q Consensus 132 ~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~~~ 178 (182)
+... .. ++...+ .........++++++||++|.|+. .|++.|...++
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 5221 11 222222 211222235789999999999997 68887766543
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=5.3e-21 Score=145.89 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc------------c-----------ccccccceeeEEEECCEEEEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV------------S-----------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~------------~-----------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+... +. . ...|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998631 10 0 0112233445567788999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+...+..+++.+|++++|+|+.++... .....+... ...+.|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 9999988888899999999999999987432 222222222 2247899999999999754
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=8.1e-22 Score=148.45 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=102.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++. .+.. ...|++.....+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999864 1110 1234555556666788
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---HH---HHHHHHHHHHhccccCCC-eEEEEEeCCCCCCC
Q 030133 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGA-VALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~ 133 (182)
..+.+|||||++.+...+..++..+|++++|+|++++.. |+ .....+... .. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 999999999999999989999999999999999987631 11 222222222 22 345 49999999999732
Q ss_pred CCH--HHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030133 134 LDD--AAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... +++...+. ........++++++||++|.|+.+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 111 12222221 111111246899999999999864
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.86 E-value=7.5e-22 Score=159.15 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=109.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------ccc------------ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------VVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++|+++|++++|||||+++|.+.. +.. ...|+......+......+.+|||||++.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567899999999999999999998631 000 011222222334446789999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030133 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
...+..++..+|++|+|+|++++... ...+++..+. . .++| +++++||+|+.+.... + ++.+.+.....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888899999999999999987532 3344443332 2 2577 8999999999752111 1 12222221111
Q ss_pred cCCceEEEEecCCCC--------CCHHHHHHHHHHHHhc
Q 030133 149 KNRQWAIFKTCAIKG--------EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~~~~ 179 (182)
....++++++||++| .|+.++++.|.+.++.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 223578999999999 4689999999887654
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.86 E-value=8e-21 Score=149.14 Aligned_cols=114 Identities=23% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------cccccccceeeEEEECCEEEEEEECCCCCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG--EVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+|+|++|+|||||+++|+.. .+. ....|+......+.+.+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56789999999999999999999831 110 123345555666777889999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+...+..+++.+|++++|+|+.++.+......| ..... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999998766555433 33322 47899999999999754
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=4.6e-21 Score=130.57 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=99.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECCEEEEEEECCCCCCC----------ccch
Q 030133 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI----------RPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~----------~~~~ 78 (182)
.......+++++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ .+.+|||||.... ....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 345678899999999999999999999877432 33433322 22333333 6789999997532 1122
Q ss_pred hhhc---CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-HHHHhCcccccCCceE
Q 030133 79 RCYF---PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWA 154 (182)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (182)
..++ ..++++++++|+.++.+.... .+..++.. .+.|++++.||+|+.+....+. +.............+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 2333 578999999999987654321 12222222 4688999999999864321111 1111111111223567
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+++.|++++++.|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999887654
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=3.7e-20 Score=145.42 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=87.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc--CCccc-------------------ccccccceeeEEEECCEEEEEEECCCC
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQM--GEVVS-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
...+..+|+++|++|+|||||+++|+. +.+.. ...|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 346788999999999999999999984 22110 112334445566778899999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+...+..+++.+|++++|+|+.++.+..... .+..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 999988999999999999999999887655444 3333322 47899999999999764
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.84 E-value=5e-20 Score=144.17 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------ccccccceeeEEEECCEEEEEEECCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++..+++++|+.|+|||||++++++.... . ...+.......+.+....+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 456789999999999999999999843221 0 0112233444556678999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030133 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+...+..+++.+|++++|+|+.++.... ...++..... .+.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 99888888999999999999998775432 3344444432 478999999999987
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.84 E-value=1e-20 Score=136.50 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=98.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc---ccce--------------------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT---IGFN-------------------------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t---~~~~-------------------------------- 52 (182)
....+|+|+|.+|+|||||+|+|++..+.+ ..|+ +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456799999999999999999999987622 1110 0000
Q ss_pred ------------------eeEEEE---CCEEEEEEECCCCCC-------------CccchhhhcCCCCeEEEEEeCCCcc
Q 030133 53 ------------------VETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 53 ------------------~~~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
...+.+ ...++.+|||||... +...+..++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000111 346899999999754 3344567788999999999984332
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc--CCceEEEEecCCC---CCCHHHHHHHH
Q 030133 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK--NRQWAIFKTCAIK---GEGLFEGMDWL 173 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~~v~~l~~~i 173 (182)
........+...+.. .+.|+++|+||+|+.+.... ..+........ ...+++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 111111122222222 46899999999999754331 11222211111 2233455555555 78999999999
Q ss_pred HHHHhcC
Q 030133 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.++..
T Consensus 257 ~~~~~~~ 263 (315)
T 1jwy_B 257 ILYFKNH 263 (315)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 8888754
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=1.3e-20 Score=147.97 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=106.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-cee--------eEEE--------------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNV--------ETVQ-------------------------- 57 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~--------~~~~-------------------------- 57 (182)
...++|+|+|.+|+|||||+|+|++..+.+ ..|++. +.. ....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 567899999999999999999999987544 333331 000 0110
Q ss_pred --------------------ECC----EEEEEEECCCCCC---CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHH
Q 030133 58 --------------------YNN----IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 58 --------------------~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
+.. ..+.+|||||... ....+..+++.+|++++|+|++++.+......|. ..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-NY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-HH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-HH
Confidence 100 3689999999543 3455667889999999999999887665554332 22
Q ss_pred HhccccCCCeEEEEEeCCCCCCCC-----CHH-------HHHHH----hCcccc----cCCceEEEEecCC---------
Q 030133 111 LEEEELKGAVALIFANKQDLPGAL-----DDA-------AVSEA----LELHKI----KNRQWAIFKTCAI--------- 161 (182)
Q Consensus 111 ~~~~~~~~~~iivv~nK~D~~~~~-----~~~-------~~~~~----~~~~~~----~~~~~~~~~~Sa~--------- 161 (182)
+.. .+.|+++|+||+|+.... ... .+... +..... .....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 222 357899999999985331 100 12111 111000 0123469999999
Q ss_pred -----CCCCHHHHHHHHHHHHhc
Q 030133 162 -----KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 -----~~~~v~~l~~~i~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887654
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=6.4e-20 Score=129.04 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcC-------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP------- 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------- 83 (182)
.+.++|+++|.+|+|||||+|++++..+.. ..+ |.......+.+.+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 478999999999999999999999988533 222 344555666778899999999999877555433332
Q ss_pred --CCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCC
Q 030133 84 --NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLP 131 (182)
Q Consensus 84 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~ 131 (182)
.+|++++|++++..........++..+..... ....|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 78999999998765422222344444433211 1124899999999995
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.83 E-value=2.4e-19 Score=140.98 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=85.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------------------ccccccceeeEEEECC-------EEEEE
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VVS-------------------TIPTIGFNVETVQYNN-------IKFQV 65 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-------~~~~~ 65 (182)
..+..+|+|+|+.|+|||||+++|+... +.. ...|+......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4677899999999999999999997431 110 1113333334455555 89999
Q ss_pred EECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|||||+..+...+..+++.+|++++|+|++++....... .+..... .+.|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999888999999999999999999875543333 3333322 47899999999998654
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.8e-21 Score=140.74 Aligned_cols=157 Identities=15% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c--------cccccceeeEEEE--CC--EEEEEEECCCC-------CC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T--------IPTIGFNVETVQY--NN--IKFQVWDLGGQ-------TS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~-------~~ 73 (182)
...++|+++|++|+|||||+++|++..... . .+|.+........ .+ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 567899999999999999999987654322 1 1343333322222 33 47899999998 55
Q ss_pred Cccchh-------hhcC-------------CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 74 IRPYWR-------CYFP-------------NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+...+. .+++ ++|+++|+++.. ..++......+...+. .+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 3332 234566666652 2224444432222222 47899999999998653
Q ss_pred CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.......... .......+++++++||+++.+ ++.|..+.+.+.
T Consensus 190 ~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 2111111111 122234567899999999988 666666665543
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=2.3e-19 Score=132.94 Aligned_cols=157 Identities=21% Similarity=0.265 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..++++|++|+|||||++.+.+..... ...|...+...+.+.. ..+.+||+||.... ..........++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 468999999999999999998875321 2223445555566654 78999999997432 111223356799
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
.++.++|++ ...+.....+..+..... .....|.++++||+|+... ..+...... ....+++++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~--l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADA--LAREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHH--HHTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHH--HHhcCCeEEEEECCCccC
Confidence 999999998 555666665555554321 1235789999999998643 222211111 122345799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030133 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++++.|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.80 E-value=2.3e-18 Score=132.00 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=87.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------------------ccc-------ccccccceeeEEEECCEEEEEEECC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE------------------VVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------------------~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+.-+|+|+|+.++|||||..+|+... +.. ..-|+......+.|++..+.++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 356799999999999999999996211 111 1124455667788899999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
||.+|.......++-+|++++|+|+..+--. +....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9999999999999999999999999988543 33344444443 47999999999998654
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=2.1e-18 Score=121.78 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccchh-------hh--
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR-------CY-- 81 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~-- 81 (182)
...++|+++|.+|+|||||+|++++..+.. ..+ |.......+...+..+.+|||||+..+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 468999999999999999999999988643 222 22233444556888999999999876543221 12
Q ss_pred cCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCCC
Q 030133 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~ 133 (182)
...+|++++|+|++... +... ..++..+....+ ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 34689999999986532 3322 344444433211 012699999999998643
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.79 E-value=8.9e-20 Score=133.38 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc----------------------ccce-------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGFN------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~------------- 52 (182)
....+|+++|.+|+|||||+|+|++..+.+ ..|+ +++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999988642 1122 1110
Q ss_pred ----------e--eEEEE-CCEEEEEEECCCCCC-------------CccchhhhcCCCC-eEEEEEeCCCcccHHHHHH
Q 030133 53 ----------V--ETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTE-AVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 53 ----------~--~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 105 (182)
. ..+.. ....+.+|||||... +..+...++..++ ++++++|++..........
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0 01111 246899999999532 2334556665554 5555667665432222222
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++..+ ...+.|+++|+||+|+.+... ...... ..... .....+++++||+++.|++++++.+.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222 224689999999999975432 122211 11111 122357899999999999999998876
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=2.8e-20 Score=137.46 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEE---------------------EC---CEEEEEEECCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQ---------------------YN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (182)
++|+++|.+|+|||||+|++.+..... ..| |...+..... +. ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999877321 222 3333333221 11 36799999999
Q ss_pred CCCC----ccc---hhhhcCCCCeEEEEEeCCCc
Q 030133 71 QTSI----RPY---WRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 71 ~~~~----~~~---~~~~~~~~d~ii~v~d~~~~ 97 (182)
.... ... ....++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7531 212 23457899999999999875
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=1.3e-19 Score=132.82 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=94.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccc-ccc---------------------------------------------
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--------------------------------------------- 50 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~--------------------------------------------- 50 (182)
-.+|+++|++|+|||||+|++.+..+.+... +..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3499999999999999999999987633111 110
Q ss_pred -------c--eeeEEEE---CCEEEEEEECCCCCCC-------------ccchhhhcCCCCeEEEEEeCCCcccHHHHHH
Q 030133 51 -------F--NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 51 -------~--~~~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 105 (182)
+ ....+.. ....+.+|||||.... ......++.++|++++++|..+.+.....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-- 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-- 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence 0 0001111 2457899999997765 45567788999999999987654332211
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030133 106 EFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+ ..++......+.|+++|+||+|+.+..... .+... ......+.+++.+|++++.++++.+..
T Consensus 192 ~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~-~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 A-IKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILE-GRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHT-TSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred H-HHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHc-CccccccCCeEEEEECChHHhccCCCH
Confidence 1 222233333467999999999997542211 11111 112334567899999998877765443
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.77 E-value=2.8e-19 Score=130.80 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=95.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--cccccccc-------------------eeeE-----------
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIGF-------------------NVET----------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~~~-------------------~~~~----------- 55 (182)
..+...|+++|.+|+|||||++.|... .+. ...++... ....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 356789999999999999999999532 111 01110000 0000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030133 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.+|||||... ........+|++++|+|+...+...... ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 012467899999999433 3334458899999999987665432111 11124689999
Q ss_pred EeCCCCCCCCCHHHHHHHhCc----ccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 125 ANKQDLPGALDDAAVSEALEL----HKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||+|+............+.. ... .....+++++||++|.|+++++++|.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998543121111111211 100 1224579999999999999999999987653
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.74 E-value=2.1e-18 Score=138.04 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=87.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc-------ccccccceeeEEEEC------
Q 030133 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE------------VVS-------TIPTIGFNVETVQYN------ 59 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~------------~~~-------~~~t~~~~~~~~~~~------ 59 (182)
+.++++ ...+..+|+|+|++|+|||||+++|+... +.. ...|+......+.+.
T Consensus 9 ~~~~m~--~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 9 MRSLMD--KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp HHHHHH--CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHhh--CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 344443 23567899999999999999999998641 110 111333333344443
Q ss_pred ----------CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030133 60 ----------NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ----------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+..+.+|||||+.++...+..+++.+|++++|+|+.++.+.+....|. .... .+.|+++|+||+|
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVD 161 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCC
Confidence 678999999999999999999999999999999999987776654333 3322 4789999999999
Q ss_pred CC
Q 030133 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 85
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=120.71 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC------Cc--ccccccccc--------------------ee-------eE----
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG------EV--VSTIPTIGF--------------------NV-------ET---- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~------~~--~~~~~t~~~--------------------~~-------~~---- 55 (182)
.....|+++|++|+|||||+|.+.+. .+ ....++... .. ..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999852 11 011111000 00 00
Q ss_pred ----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEE
Q 030133 56 ----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 56 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
+...+.++.++||||.... .......+|++++|+|+..+........ .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 0124678899999995322 2445678999999999987642211111 11 245789999
Q ss_pred eCCCCCCCCCH----HHHHHHhCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 126 NKQDLPGALDD----AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 126 nK~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||+|+.+.... ..+...+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99998532111 112111221111 112357899999999999999999988653
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=3.5e-18 Score=131.09 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc----cccccccceeeEE----------------------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETV---------------------------------- 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~---------------------------------- 56 (182)
....+|+|+|.+|+|||||+|+|++..+. ...+++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998863 2333332111000
Q ss_pred ----EECC---EEEEEEECCCCCC-----------CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 030133 57 ----QYNN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 57 ----~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+.. ..+.+|||||... +...+..++..+|++++|+|+++.........++..+. . .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cC
Confidence 0000 3689999999764 33455667888999999999988544444454544432 2 35
Q ss_pred CeEEEEEeCCCCCCC
Q 030133 119 AVALIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~D~~~~ 133 (182)
.|+++|+||+|+.+.
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 789999999998754
No 194
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.72 E-value=7e-18 Score=131.58 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=112.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcc------------cc-------cccccceeeEEEECCEEEEEEECCCCCCCcc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM--GEVV------------ST-------IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.||+|+|+.++|||||..+|+. +... .. .-|+......+.+++..+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5799999999999999999962 1110 00 1133344455677889999999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---hCc--------
Q 030133 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---LEL-------- 145 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---~~~-------- 145 (182)
.....++-+|++++|+|+..+-.. +....|..... .++|.++++||+|.........+.+. +..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 999999999999999999987432 23444444443 36889999999998654332211111 100
Q ss_pred ------------------------------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030133 146 ------------------------------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 146 ------------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
......-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 00112235788899999999999999999877
Q ss_pred hcC
Q 030133 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
+.+
T Consensus 238 p~p 240 (638)
T 3j25_A 238 YSS 240 (638)
T ss_dssp CCS
T ss_pred cCc
Confidence 643
No 195
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.72 E-value=4.8e-17 Score=127.72 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=98.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-------------------------------------------
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG------------------------------------------- 50 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~------------------------------------------- 50 (182)
.-.+|+++|.+++|||||+|++++..+.+ ..+++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45699999999999999999999987632 111110
Q ss_pred -----ce----eeEEEE-CCEEEEEEECCCCCCC-------------ccchhhhc-CCCCeEEEEEeCCCcccHHHHHHH
Q 030133 51 -----FN----VETVQY-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 51 -----~~----~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~ 106 (182)
+. ...+.. ....+.++||||.... ......++ ..+|++++|+|++.+.........
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00 001111 2346889999995441 12233344 578999999999876443333222
Q ss_pred HHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 107 FHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+..+ . ..+.|+++|+||+|+.+.... ..+.. ...........+++++||++|.|++++++.+.+
T Consensus 210 l~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222 2 246899999999999754332 22211 111111223457899999999999999999886
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=4.5e-18 Score=121.67 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=77.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC-Ccccc---------cccccceeeEEEE----CCEEEEEEECCCC-------C
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG-EVVST---------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~-~~~~~---------~~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (182)
..-.++|+++|++|+|||||++++.+. .+... .++.......+.. ....+.+|||+|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356789999999999999999998875 33221 1222222222222 2468899999997 4
Q ss_pred CCccchh-------hhc-------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030133 73 SIRPYWR-------CYF-------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+..... .++ ..+++++|+.+++.. ++..... .+++... .+.++++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCC
Confidence 4444332 222 124557777765432 1222221 2222221 3578999999999864
Q ss_pred CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
........+.. .......+++++++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 31111111111 1112233567999999999 999999999887754
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.71 E-value=1e-17 Score=114.86 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=92.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc----------cceeeEE------------------EEC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI----------GFNVETV------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~ 59 (182)
.+..+++++|.+|+|||||+++|.+..... ..+.. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456799999999999999999997642110 11110 0000111 113
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHH
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 137 (182)
..++.+|||+|+..... .+....+.+++|+|+.+... ....+ ... .+.|+++|+||+|+.+. ....
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKH-PEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHC-HHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhh-hhh------hhcCCEEEEecccCCcchhhHHH
Confidence 45788999998521110 11135688999999987642 11111 111 14688999999998532 2334
Q ss_pred HHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030133 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++...+... ....+++++||++|.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433221 235689999999999999999999987654
No 198
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=3.9e-18 Score=122.10 Aligned_cols=134 Identities=19% Similarity=0.096 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcc-c-ccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHH
Q 030133 32 TILYRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEF 107 (182)
Q Consensus 32 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (182)
+|+.++..+.|. . +.||++.... ... .+..+.+||+ ++++..++..+++++|++++|+|++++. ++.....|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 677788777776 4 7788884443 333 2237899999 8999999999999999999999999987 677777777
Q ss_pred HHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 108 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.. .+.|+++|+||+|+.+....++..+..... ... ++++++||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76533 478999999999996432111112221111 111 57999999999999999987653
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=122.56 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--------cccccceeeEEEE----CCEEEEEEECCCCCCCc------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~------ 75 (182)
.-.++|+++|++|+|||||++.|++..+.. . .++.......+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456789999999999999999999877532 1 1122111111111 12478999999976531
Q ss_pred -cc------------------hhhhcCCC--CeEEEEEeCC-CcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030133 76 -PY------------------WRCYFPNT--EAVIYVVDSS-DTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 76 -~~------------------~~~~~~~~--d~ii~v~d~~-~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.. ...++..+ |+++|+.+++ .. +.... .++..+ . .+.|+|+|+||+|+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--LKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--CCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--CCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 10 12233444 4566665554 23 33333 344443 2 3689999999999864
Q ss_pred CCCHHHHHHHh--CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 133 ALDDAAVSEAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 133 ~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. .++.... ........+++++++|++++.++++++..+.+.++
T Consensus 182 ~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 P---EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp H---HHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred H---HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 3 2332211 01111223567899999999999998888877654
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.70 E-value=4.5e-17 Score=114.44 Aligned_cols=165 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh-----cCCccc--cccccc-c------------eeeEE------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQ-----MGEVVS--TIPTIG-F------------NVETV------------------ 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~-----~~~~~~--~~~t~~-~------------~~~~~------------------ 56 (182)
.+...+++.|.+|+||||+++.+. +....- ..+... . .....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 456788899999999999999997 444211 111100 0 00000
Q ss_pred ------------EE-CCEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccC
Q 030133 57 ------------QY-NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 57 ------------~~-~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (182)
.. ...++.+|||||+....... ...+.. +++++++|+....+..................
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 13589999999986543221 124466 89999999865433333322221111111223
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCc-------------------------ccccCCceEEEEecCCCCCCHHHHHHH
Q 030133 118 GAVALIFANKQDLPGALDDAAVSEALEL-------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+.|+++|+||+|+.......++.+.+.. ........+++++||+++.|+++++++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 6899999999998643211112211100 000112346899999999999999999
Q ss_pred HHHHHhcC
Q 030133 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
|.+.+...
T Consensus 251 i~~~~~~~ 258 (262)
T 1yrb_A 251 AYEHYCTC 258 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 99887653
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.69 E-value=7.8e-16 Score=121.55 Aligned_cols=116 Identities=20% Similarity=0.141 Sum_probs=83.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC--------cc------c-------ccccccceeeEEEEC-------CEEEE
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGE--------VV------S-------TIPTIGFNVETVQYN-------NIKFQ 64 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~------~-------~~~t~~~~~~~~~~~-------~~~~~ 64 (182)
+-++.-+|+|+|+.++|||||..+|+... .. . ..-|+......+.+. +..+.
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 34667799999999999999999996211 11 0 001222333444442 57899
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++|||||.+|.......++-+|++++|+|+..+-.. +....|....+ .++|.++++||+|....
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 999999999999999999999999999999988432 33444455444 37999999999998643
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.7e-16 Score=115.98 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=78.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..+|+++|.||+|||||+|+|.+..... ...|.+.+...+.+.+.+++++||||.-.. ........+.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 4589999999999999999999876433 444677888889999999999999994321 122344567899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCC
Q 030133 87 AVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDL 130 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~ 130 (182)
++++|+|+.++. ........++.. .....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999873 222211111111 122245677778888875
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=2e-15 Score=109.76 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-c--cccccceeeEEEECC-----------------EEEEEEECCCCCCCc-
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIR- 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~- 75 (182)
.++|+++|.+|+|||||+|++.+..+.. . .+|.+.+...+.+.+ ..+.+|||||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999877422 2 235566665665543 579999999987642
Q ss_pred ------cchhhhcCCCCeEEEEEeCCC
Q 030133 76 ------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 76 ------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
......++.+|++++|+|+.+
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223445789999999999986
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.69 E-value=1.8e-17 Score=120.62 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=90.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--cccccccc-------------------eee--E---------
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTIGF-------------------NVE--T--------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~~-------------------~~~--~--------- 55 (182)
..+...++++|++|+|||||++.+.+ .... ...+.... +.. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 45678899999999999999999963 2211 01110000 000 0
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030133 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.+|||||...... .....+|++++|+|+..++...... . ...+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~-----~~~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----K-----GLMEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----H-----HHHHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----H-----hhhcccCEEE
Confidence 002467899999999765432 2458899999999997653211100 0 0013578999
Q ss_pred EeCCCCCCCCCHHHHHHHhC----cccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 125 ANKQDLPGALDDAAVSEALE----LHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+............+. .... .....+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999864311111111111 1010 111357899999999999999999988654
No 205
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=103.63 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=115.1
Q ss_pred HHHHhhhhcCCCccEEEEEcCC-CCCHHHHHHHHhcCC-ccc-------ccccccc-------eeeEEEE----------
Q 030133 5 FSRMFSSLFGNKEARILVLGLD-NAGKTTILYRLQMGE-VVS-------TIPTIGF-------NVETVQY---------- 58 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~-~~GKssl~~~l~~~~-~~~-------~~~t~~~-------~~~~~~~---------- 58 (182)
.+.|+++...+...+++++||. ..=..+|+.++...+ ..+ ....++. +.+.+..
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 4567888889999999999983 455668988887654 221 1111110 0111111
Q ss_pred ----------CCEEEEEEECC------CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHH---HHHHhccc-cCC
Q 030133 59 ----------NNIKFQVWDLG------GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEE-LKG 118 (182)
Q Consensus 59 ----------~~~~~~~~D~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (182)
...++-...+| |++.++..|..|+.++|++|||+|.++.+.++ ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 01122333343 78899999999999999999999999887654 44444 33333322 357
Q ss_pred CeEEEEEeCC-CCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 119 AVALIFANKQ-DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 119 ~~iivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.|++|+.||. |+.......++.+.+..... ...|.+..|||++|+|+.+-++||.+.+...
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 8999999995 78777788899998887665 4789999999999999999999999877543
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.61 E-value=1.1e-15 Score=105.10 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc----------------eeeEEEE-------------------
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF----------------NVETVQY------------------- 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~----------------~~~~~~~------------------- 58 (182)
.+..+|+++|.+|+|||||+++++...+.. ..++++. ....+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998654322 1111111 1111110
Q ss_pred -CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CC
Q 030133 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~ 135 (182)
...++.++|++|.-... ..+-...+.++.++|+......... .... .+.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 01256677777632111 1111234556677775332111100 0011 14678999999998532 23
Q ss_pred HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 136 DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
..++...... .....+++++||++|.|++++|+.+.+.+...
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333333321 12356899999999999999999999887653
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.59 E-value=2e-15 Score=109.50 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=89.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccccccc-------------------ceeeE-----------
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTIG-------------------FNVET----------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~-------------------~~~~~----------- 55 (182)
..+...++++|++|+|||||++.+.+ +... ...++.. .....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35677899999999999999999973 3321 1111000 00000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030133 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.++||||...-. ......+|.+++++|+..++......... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 11257899999999965432 23347899999999987543211111000 12355778
Q ss_pred EeCCCCCCCCC-----HHHHHHHhCccccc--CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 125 ANKQDLPGALD-----DAAVSEALELHKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+..... .+++.......... ....+++.+||+++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 11222222111100 11346888999999999999999988654
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=1.6e-14 Score=105.53 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c--ccccccceeeEEEE---------------------CCEEEEEEECCCCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVV-S--TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (182)
++++++|.+|+|||||+|++.+.... . ...|...+.....+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999876421 1 22244444444433 235799999999765
Q ss_pred Cc-------cchhhhcCCCCeEEEEEeCCC
Q 030133 74 IR-------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.. ..+...++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223445789999999999985
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.57 E-value=8.2e-15 Score=102.25 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=87.4
Q ss_pred CCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHH---HHHhccc-cCCCeEEEEEeC-CCCCCCCCHHHHHHH
Q 030133 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFH---AILEEEE-LKGAVALIFANK-QDLPGALDDAAVSEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~ 142 (182)
.+||+.++..|..|+.++|++|||+|.+|.++++ ....+. .++.... ..+.|++|+.|| -|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999998765 333222 3443322 357899999997 588777788899998
Q ss_pred hCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030133 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+..... ...+.+..|||++|+|+.+-++||.+.+...
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 887665 3789999999999999999999999987543
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=100.11 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCCCCCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (182)
....+++++|.+|+|||||+|++.+..+.. ...|.+++...+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 567899999999999999999999886532 223455555555543 235999999997653
Q ss_pred c-------cchhhhcCCCCeEEEEEeCCCcc
Q 030133 75 R-------PYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 75 ~-------~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
. ..+..+++.+|++++|+|+.+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 24567789999999999997543
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=2.4e-12 Score=92.05 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=71.7
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc
Q 030133 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
++++..+...+++++|++++|+|++++. ++.....|+..+.. .++|+++|+||+|+.+........+... ...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~--~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS--IYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH--HHH
Confidence 6777777888999999999999999886 77777777765533 4799999999999964311001111111 111
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 150 NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.+++++||++|.|++++++.+..
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 22468999999999999999987643
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.23 E-value=9e-11 Score=86.95 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=89.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeEEEECC-EEEEEEECCCCCCCccchhh-----hcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRC-----YFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~-----~~~ 83 (182)
....++++|++|+|||||+|.+.+-..... ...+.......+... ..+.++|++|.......... .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 455899999999999999999988432221 100100111111121 25789999984321111111 123
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC---------CCCCHHHHHHHhCccc-----cc
Q 030133 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDDAAVSEALELHK-----IK 149 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~ 149 (182)
..+..++ ++..... ..-......+.. .+.|+++|.||.|+. +.....++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355554 7766321 111122222222 368999999999873 2233444444443321 11
Q ss_pred -CCceEEEEecC--CCCCCHHHHHHHHHHHHhcCC
Q 030133 150 -NRQWAIFKTCA--IKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 150 -~~~~~~~~~Sa--~~~~~v~~l~~~i~~~~~~~~ 181 (182)
.....++.+|+ .++.|++++.+.+.+.+++.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 12335888999 667789999999999887654
No 213
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=8.9e-11 Score=86.42 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECC-----------------EEEEEEECCCCC-
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNN-----------------IKFQVWDLGGQT- 72 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~- 72 (182)
....+++++|++|+|||||+|.+.+..... ..| |..++...+.+.+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 457899999999999999999999976522 333 5556666666654 468999999943
Q ss_pred ------CCccchhhhcCCCCeEEEEEeCCC
Q 030133 73 ------SIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345666789999999999864
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=3.6e-12 Score=93.56 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----Cccc--ccccccceeeEEEECCEEEEEEECCCCCCCcc--------chhhh
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG-----EVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~-----~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
..+++++|.+|+|||||+|++.+. .... ..|.++.....+... ..+.++||||...... ....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 458999999999999999999876 2222 334333333344333 2489999999543221 11222
Q ss_pred c--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 82 F--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+ +..+.+++++++.+.--...... +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 2 67899999999853311111110 12223346899999999998644
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.21 E-value=2.1e-11 Score=92.46 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=87.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc--c---cccc-----------cceeeE-----------------E
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS--T---IPTI-----------GFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~--~---~~t~-----------~~~~~~-----------------~ 56 (182)
+...|+++|.+|+||||+++.|. +....- . .+.. +..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 544211 1 0000 010000 0
Q ss_pred EECCEEEEEEECCCCCCCcc-chhh---h--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCC
Q 030133 57 QYNNIKFQVWDLGGQTSIRP-YWRC---Y--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D 129 (182)
...+.++.++||||...... .+.. . ...+|.+++|+|+..+.... .....+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCc
Confidence 11567899999999765322 1111 1 12789999999998764321 12222211 1464 89999999
Q ss_pred CCCCCCH-HHHHHHhCccc------ccC----CceEEEEecCCCCCC-HHHHHHHHHHH
Q 030133 130 LPGALDD-AAVSEALELHK------IKN----RQWAIFKTCAIKGEG-LFEGMDWLSNT 176 (182)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~------~~~----~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 176 (182)
....... ..+........ ... ...+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8644322 12222221100 000 111245689999999 99999988765
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=2.9e-11 Score=88.73 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=69.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccccceeeEEEECCEEEEEEECCCCCCCccc--------hhh
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE------VV--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRC 80 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~ 80 (182)
..+++++|.+|+|||||+|++.+.. .. ...|.++.....+.... .+.++||||....... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998752 11 12332333333333332 3899999995432211 111
Q ss_pred h--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q 030133 81 Y--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140 (182)
Q Consensus 81 ~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 140 (182)
+ .+..+.++++++........... .+......+.|+++++||+|.......+...
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred hccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHH
Confidence 1 36678999999885331111111 0122233468999999999986554443333
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=84.65 Aligned_cols=138 Identities=11% Similarity=0.127 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-c----cccccceeeEEEEC--C--EEEEEEECCCCCCCc-----------
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYN--N--IKFQVWDLGGQTSIR----------- 75 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~--~--~~~~~~D~~g~~~~~----------- 75 (182)
..++++|+|++|+|||||+|.+++..+.. . .+........+... . ..+.++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 34569999999999999999999875432 1 11111111111111 1 368899999854321
Q ss_pred ---cch----hhh---------cCC--CCe-EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH
Q 030133 76 ---PYW----RCY---------FPN--TEA-VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 76 ---~~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 136 (182)
..+ ..+ ... +|+ ++++.|...+-+..+ . .+++... .+.|+|+|+||+|.......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--i---eilk~L~-~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--L---VTMKKLD-SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--H---HHHHHTC-SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--H---HHHHHHh-hCCCEEEEEcchhccchHHH
Confidence 011 111 112 234 455556554432222 2 2222222 47899999999998654333
Q ss_pred HHHHHHhCcccccCCceEEEEecC
Q 030133 137 AAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+...+... ....+++++.+|.
T Consensus 195 ~~l~~~I~~~-L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSE-LVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHH-HBTTBCCCCCCC-
T ss_pred HHHHHHHHHH-HHHcCCcEEecCC
Confidence 3333322210 1234555555553
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.05 E-value=6.6e-10 Score=78.18 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=62.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc--------ccccceeeEEEE--C----CEEEEEEECCCCCCCcc------
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI--------PTIGFNVETVQY--N----NIKFQVWDLGGQTSIRP------ 76 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~--------~t~~~~~~~~~~--~----~~~~~~~D~~g~~~~~~------ 76 (182)
.++++++|+.|+|||||+|.+++....... .........+.+ + ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864322100 000011112222 1 23778999998422100
Q ss_pred chh----------------------hhcCCCCeEEEEEeCC-CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030133 77 YWR----------------------CYFPNTEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ~~~----------------------~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
... -.+..+++.++++|.. .+-+..+ ...+..+ .. ..++++|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L-~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL-SK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence 000 0123468999999965 3322222 2222222 22 2899999999998654
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.98 E-value=2.5e-10 Score=83.73 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc-
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHK- 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~- 147 (182)
..+.+...+..+.+.++++++|+|+.++. ..|...+.+.. .+.|+++|+||+|+.+.. ...++.+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 35677888888888999999999998752 22322222221 368999999999996543 2233333221111
Q ss_pred -ccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030133 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
......+++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 011123699999999999999999997654
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.94 E-value=1.5e-09 Score=76.82 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=38.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
....++++++|.||+|||||+|++.+..... ..|.++.....+.. +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 4567899999999999999999999887544 22222222222333 3478999999964
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.92 E-value=5.4e-10 Score=82.03 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=67.7
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc
Q 030133 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.++.+......++..++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.+... ...+.+.+... .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-A 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-H
Confidence 477888888888899999999999998753 1221121111 3689999999999975432 33333322211 1
Q ss_pred cCCc---eEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+ ..++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1122 36899999999999999999977543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.90 E-value=1.1e-09 Score=77.48 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=66.1
Q ss_pred EEECCCCC-CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030133 65 VWDLGGQT-SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 65 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
+-..|||. .........+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578886 345566777899999999999998865432 1222232 368999999999997531111222222
Q ss_pred CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030133 144 ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123447899999999999999998877654
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.84 E-value=8e-10 Score=77.41 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccc--ceeeEEEECCEEEEEEECCCCCCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
++++++|.+|+|||||+|++.+.......++.+ .....+.. ...+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcccC
Confidence 699999999999999999999887654332222 22222222 347899999996543
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.69 E-value=3.1e-08 Score=76.48 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc-cccceeeEEE-------ECCEEEEEEECCCCCC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIP-TIGFNVETVQ-------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~~~D~~g~~~ 73 (182)
..+..+|+|+|.||+|||||+|+|++.... .... +.+....... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 467789999999999999999999988742 2211 1122222211 1467899999999653
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.55 E-value=6.7e-08 Score=72.26 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccc--------------------------ccccc-ee--eEE-EE
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG------EVV--STI--------------------------PTIGF-NV--ETV-QY 58 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~--------------------------~t~~~-~~--~~~-~~ 58 (182)
...|+++|++|+||||+++.|... .+. ... .+.+. .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999642 211 000 00000 00 000 01
Q ss_pred CCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-e-EEEEEeCCCC
Q 030133 59 NNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-V-ALIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~ 130 (182)
.+.++.++||||......... .....+|.+++|+|+..+.. .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999765422111 12236899999999976632 22222222 1 234 4 8999999998
Q ss_pred CC
Q 030133 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=5.2e-07 Score=67.37 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----cccc---------ccceeeEEE------------------
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIPT---------IGFNVETVQ------------------ 57 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~-----~~~t---------~~~~~~~~~------------------ 57 (182)
+...|+++|++|+||||++..|. +..+.- ..+. .......+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999886 222110 0000 000000000
Q ss_pred -ECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030133 58 -YNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 58 -~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
..+.++.++||||......... .....+|.+++|+|+..+...... ...+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCC
Confidence 0347899999999654332211 112357999999999876433222 2223222 2345799999998
Q ss_pred CCC
Q 030133 131 PGA 133 (182)
Q Consensus 131 ~~~ 133 (182)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.51 E-value=1.1e-07 Score=74.15 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++|+|+.|+|||||++.+.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=2.3e-08 Score=70.03 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=58.1
Q ss_pred CCCCCC-CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030133 68 LGGQTS-IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||.. ........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 477663 3345667789999999999999885532211 11 1 1 789999999999975321122222221
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030133 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.++ .+||+++.|++++++.+.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 123456 9999999999998887643
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.25 E-value=4.6e-07 Score=64.70 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=55.4
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEE
Q 030133 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (182)
......++|.+++|+|+.++..-... +..++......++|.++|+||+|+.+.... ..+....+.. ...+.+++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y--~~~g~~v~ 154 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY--RNIGYDVY 154 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH--HHHTCCEE
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH--HhCCCeEE
Confidence 34467899999999999977543332 222332222247899999999999765220 1122222111 11234689
Q ss_pred EecCCCCCCHHHHHHH
Q 030133 157 KTCAIKGEGLFEGMDW 172 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~ 172 (182)
.+||.++.|++++++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888776543
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=1.6e-06 Score=64.64 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----ccc-----------cccceeeE-----------------E
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~-----~~~-----------t~~~~~~~-----------------~ 56 (182)
+...++++|++|+||||++..|. +..+.- ..+ ..+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999986 222110 000 00100000 0
Q ss_pred EECCEEEEEEECCCCCC--Cccch----hh--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030133 57 QYNNIKFQVWDLGGQTS--IRPYW----RC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~--~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
...+.++.++||||... ..... .. .....+.+++|+|+..+.........+.+. -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01367899999999654 22111 11 112468999999998764433333332222 13468899999
Q ss_pred CCCC
Q 030133 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9753
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.20 E-value=5.5e-06 Score=58.98 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCccc--cc---cc-----------ccceee-----------------EEE
Q 030133 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS--TI---PT-----------IGFNVE-----------------TVQ 57 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~------~~~~~~--~~---~t-----------~~~~~~-----------------~~~ 57 (182)
...++++|++|+||||++..+. ++...- .. +. .+.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999886 222110 00 00 000000 001
Q ss_pred ECCEEEEEEECCCCCC--Cccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q 030133 58 YNNIKFQVWDLGGQTS--IRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~--~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
..+.++.++||||... ...... .....+|.+++|+|+..... .......+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322111 12346899999999975422 2222222221 244 67899999
Q ss_pred CCCC
Q 030133 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.13 E-value=7.3e-06 Score=59.71 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=52.0
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030133 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...++|.+++|.... +. +......++.... ..++|.++|+||+|+.+......+...... ....+.+++.+|
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence 357899999886654 53 3333333222221 136788999999999754221112222221 123445699999
Q ss_pred CCCCCCHHHHHHHH
Q 030133 160 AIKGEGLFEGMDWL 173 (182)
Q Consensus 160 a~~~~~v~~l~~~i 173 (182)
|.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999877643
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.07 E-value=2.2e-05 Score=58.83 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=63.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh-------cCCccc--ccc---c-----------cccee---------e--------E
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ-------MGEVVS--TIP---T-----------IGFNV---------E--------T 55 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~-------~~~~~~--~~~---t-----------~~~~~---------~--------~ 55 (182)
+...|+++|.+|+||||++..|. +..+.- ..+ . .+... . .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999886 333211 000 0 00000 0 0
Q ss_pred EEECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q 030133 56 VQYNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
....+.++.++||||......... .....++.+++|+|+...... ......+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 011467899999999765432211 124468999999999865332 222222211 233 35799999
Q ss_pred CCCCC
Q 030133 129 DLPGA 133 (182)
Q Consensus 129 D~~~~ 133 (182)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 98543
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.00 E-value=7.6e-06 Score=61.30 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+..-|+|+|++++|||+|+|.+++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345667889999999999999999863
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.94 E-value=6.4e-07 Score=67.88 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=49.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE----CCEEEEEEECCCCCC--Cccch--------
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTS--IRPYW-------- 78 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~-------- 78 (182)
+......|+++|.+|+||||+.+.|.........++..++...+.. ......+||..|.+. ....+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999754321111222211110000 112345688888632 22222
Q ss_pred hhhcCCCCeEEEEEeCCCc
Q 030133 79 RCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~ 97 (182)
..++...++.++|+|.++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC
T ss_pred HHHHHhCCCCEEEEeCCCC
Confidence 4556567888999999987
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.77 E-value=1.6e-05 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=2.6e-05 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
--++++|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.65 E-value=3.6e-05 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++...++|+|++|+|||||++.+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988653
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.64 E-value=2.9e-05 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.62 E-value=3.4e-05 Score=50.64 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.........-.++++|++|+|||||++.+.+.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344333344567999999999999999998654
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.61 E-value=5.2e-05 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.-.++++|++|+|||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456899999999999999999875
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.55 E-value=4.4e-05 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
--++++|++|+|||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999764
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.55 E-value=4.4e-05 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030133 20 ILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~ 41 (182)
++++|++|+|||||++.+.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999997643
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.54 E-value=0.00037 Score=51.99 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCEEEEEEECCCCCCCccc-hh-----hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030133 59 NNIKFQVWDLGGQTSIRPY-WR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+.++.++||||....... .. .....++.+++|+|+..... .......+.... ...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l----~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV----GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT----CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC----CceEEEEeCcCCcc
Confidence 4568999999997654321 11 11225789999999875422 222222222111 12467899999743
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.54 E-value=4.6e-05 Score=51.25 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.--++++|+.|+|||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344468999999999999999997643
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.53 E-value=0.00044 Score=46.11 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=45.5
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCC
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~ 131 (182)
.+++.++|+|+.. .......+..+|.+++++..+... ......+..+.... ...+.++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999866 334455667789999999887654 34443333332211 13456789999999954
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.51 E-value=5.4e-05 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.-.++|+|++|+|||||++.+.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468999999999999999997743
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.50 E-value=5.4e-05 Score=49.38 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030133 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
--++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999754
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.50 E-value=5.8e-05 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..--++|+|+.|+|||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999997743
No 250
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.49 E-value=7.9e-05 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.-.++++|++|+|||||++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.46 E-value=7.9e-05 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999998654
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.46 E-value=7.1e-05 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999997653
No 253
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.45 E-value=0.00011 Score=49.09 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.--++++|++|+|||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998643
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.42 E-value=9.2e-05 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...++|+|+.|+|||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998663
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.41 E-value=9e-05 Score=47.73 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999998754
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.41 E-value=8.4e-05 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997753
No 257
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=0.00023 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++.........-.+++.|++|+|||+|++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333344567999999999999999988654
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.39 E-value=0.00011 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998753
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.38 E-value=0.00014 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.--++++|++|+|||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998654
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.37 E-value=0.00013 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...++++|++|+||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999997654
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.37 E-value=0.00011 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999997753
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.37 E-value=0.00011 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..|+++|++|+||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.37 E-value=0.00012 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030133 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|+||+|+|||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.36 E-value=0.00011 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33457899999999999999997753
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.36 E-value=0.00012 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997753
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.35 E-value=0.00011 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.34 E-value=0.00012 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3368899999999999999998753
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.34 E-value=0.00013 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997754
No 269
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.33 E-value=0.00012 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997754
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=0.00015 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999997653
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.32 E-value=0.00016 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..-.++++|++|+||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999864
No 272
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.32 E-value=0.00015 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999997754
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.32 E-value=0.00014 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-.++++|+.|+|||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 274
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00014 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-++++|++|+|||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999999654
No 275
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.31 E-value=0.00023 Score=51.13 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=23.7
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030133 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+........+-++|+|++|+|||||++.+.
T Consensus 84 l~~~~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 84 LGKPEPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp HTCCCCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred hccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 333334567789999999999999999884
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.31 E-value=0.00014 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468899999999999999997753
No 277
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.31 E-value=0.00021 Score=47.70 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.......|+++|.+|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999854
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00014 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 030133 18 ARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l 37 (182)
.-|+++|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=0.00013 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998763
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.30 E-value=0.00014 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998753
No 281
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.30 E-value=4.2e-05 Score=54.63 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4578999999999999999998754
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.29 E-value=0.00015 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.29 E-value=0.00011 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.29 E-value=0.00015 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999997753
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.28 E-value=0.00016 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999885
No 286
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.28 E-value=0.00017 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998643
No 287
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.28 E-value=0.00024 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
......++++|++|+||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999998864
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.27 E-value=0.00017 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..=.++++|+.|+|||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999885
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.27 E-value=0.00021 Score=46.50 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....++++|++|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.27 E-value=0.00018 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.-.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4556799999999999999999874
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=0.00018 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3688999999999999999987553
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00018 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468999999999999999998753
No 293
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.27 E-value=0.00027 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...++|+|+.|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999876
No 294
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00021 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.26 E-value=0.00019 Score=51.41 Aligned_cols=26 Identities=31% Similarity=0.112 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+..-++|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999999865
No 296
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00016 Score=50.53 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++++|+.|+|||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44457899999999999999999763
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.25 E-value=0.00019 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999976
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.25 E-value=0.00017 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997754
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.25 E-value=0.00019 Score=50.56 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3368999999999999999998754
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.24 E-value=0.00018 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.24 E-value=0.00026 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+..+|++.|++|+||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
No 302
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.24 E-value=0.0003 Score=45.95 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=24.8
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+.........-.+++.|++|+|||+++..+...
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333345567899999999999999988654
No 303
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.23 E-value=0.0002 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+|+|++|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.22 E-value=0.00019 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999997753
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.0002 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-++++|++|+|||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999764
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00031 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999998765
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.20 E-value=0.00025 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...++|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999865
No 308
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00025 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.|+++|++|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 309
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.20 E-value=0.00021 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999998 44
No 310
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.20 E-value=0.00019 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.--++++|++|+|||||++.+.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999763
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.19 E-value=0.00028 Score=47.30 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....++|+|++|+||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999765
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00028 Score=47.09 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...++++|++|+||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999988653
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.19 E-value=0.00023 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.--++++|++|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34457899999999999999887
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=0.00025 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.18 E-value=0.00022 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.18 E-value=0.00026 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998764
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.18 E-value=0.00013 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q 030133 17 EARILVLGLDNAGKTTILYRLQ-MG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~-~~ 40 (182)
.--++++|++|+|||||++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 318
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.18 E-value=0.00049 Score=48.81 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+...|+|+|++|+|||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999998875
No 319
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.17 E-value=0.00027 Score=47.70 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+++|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.17 E-value=0.00029 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999853
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.0003 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00033 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00035 Score=46.01 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567799999999999999999854
No 324
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.15 E-value=0.0059 Score=43.45 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=42.5
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCC
Q 030133 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~ 130 (182)
.+++.++|||+...... ....+..+|.++++...+. .+.......+..+.......+.+++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 47899999987543322 2345677899999987653 2344444444444322223456655 99999984
No 325
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00027 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-|++.|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00032 Score=46.28 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.00036 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
No 328
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.13 E-value=0.00017 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34478999999999999999997643
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00012 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 330
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030133 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999764
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
No 332
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.11 E-value=0.0003 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3357899999999999999998753
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.11 E-value=0.00022 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-+++|+|++|+|||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997653
No 334
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.00028 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999998754
No 335
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.11 E-value=0.00061 Score=46.42 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998643
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00035 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00021 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999764
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.10 E-value=0.00042 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.09 E-value=0.00033 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33468999999999999999997753
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.0004 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.07 E-value=0.00047 Score=45.95 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...|++.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
No 342
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.06 E-value=0.00035 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
No 343
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.05 E-value=0.00041 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999853
No 344
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.05 E-value=0.00037 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999998754
No 345
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.04 E-value=0.00046 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998765
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00046 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998853
No 347
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.04 E-value=0.00037 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3357899999999999999998753
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.04 E-value=0.00036 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030133 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999764
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.04 E-value=0.00039 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3357899999999999999998754
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.03 E-value=0.00034 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999998653
No 351
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.00041 Score=49.24 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.|+||+|||+|++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778899999999999998653
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.02 E-value=0.00052 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.00055 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.+...|+|+|++|+||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 354
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00047 Score=46.49 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.00 E-value=0.00042 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999998754
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.00 E-value=0.00043 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467899999999999999998754
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.00 E-value=0.0005 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 358
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.00 E-value=0.00066 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.+++.|+||+|||+++.++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 344599999999999998888754
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.99 E-value=0.00044 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+++|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.99 E-value=0.00055 Score=45.99 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|++.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.98 E-value=0.00057 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....-+++.|++|+||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.98 E-value=0.0004 Score=50.16 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|+.|+|||||++.+.+-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.98 E-value=0.00055 Score=44.76 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345689999999999999999863
No 364
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.00056 Score=46.00 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998643
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.97 E-value=0.00042 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++|+|+.|+|||||++.+.+-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44579999999999999999998753
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.97 E-value=0.00054 Score=45.92 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.96 E-value=0.00043 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+..-+++.|+.|+||||+++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999998764
No 368
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.96 E-value=0.00098 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
No 369
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.95 E-value=0.0007 Score=45.13 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...|++.|.+|+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999998863
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.94 E-value=0.00069 Score=48.34 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.-.++++|+.|+||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35578999999999999999996
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00061 Score=43.91 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.92 E-value=0.00057 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 373
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.00054 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030133 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999764
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.90 E-value=0.00035 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999998754
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00075 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.90 E-value=0.00072 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999865
No 377
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.90 E-value=0.00053 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.90 E-value=0.00054 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.=.++++|+.|+|||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999999864
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00055 Score=48.82 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344788999999999999999964
No 380
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.89 E-value=0.00058 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++++|++|+|||||+..+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999873
No 381
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.0008 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++|+|++|+||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999763
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.88 E-value=0.00084 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..++++|.+|+|||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998753
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.88 E-value=0.00078 Score=48.60 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=61.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------ccc-cccc---------------ccceeeE--------------E--
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE------VVS-TIPT---------------IGFNVET--------------V-- 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------~~~-~~~t---------------~~~~~~~--------------~-- 56 (182)
.+.--++++|+.|+||||+++.+.+.. +.- ...+ .++.... +
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345678999999999999999986421 100 0000 0000000 0
Q ss_pred -EECCEEEEEEECCCCCCCccchhh------hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030133 57 -QYNNIKFQVWDLGGQTSIRPYWRC------YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
...+.++.++||+|.......... ..-..|-.+++.|+.... ........+.... ..-.+++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~----~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV----KIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc----CCCEEEEeCcC
Confidence 002456778999997543322111 112368899999987663 3333333332221 22478899999
Q ss_pred CC
Q 030133 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 64
No 384
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.88 E-value=0.0006 Score=47.32 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999999864
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.87 E-value=0.00076 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00088 Score=45.79 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999854
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00066 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 388
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.85 E-value=0.00068 Score=44.85 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-|++.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998643
No 389
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.85 E-value=0.00078 Score=44.40 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 390
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.84 E-value=0.00061 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...=-++|+|+.|+|||||++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999763
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.83 E-value=0.00064 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++|+|++|+||||+++.+.+--
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3359999999999999999997643
No 392
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.0012 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988653
No 393
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.82 E-value=0.0015 Score=45.67 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999998653
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.82 E-value=0.00078 Score=43.60 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 395
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.82 E-value=0.00067 Score=47.06 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....++++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.81 E-value=0.00093 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.....|+|.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.81 E-value=0.0014 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999999654
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.80 E-value=0.0009 Score=46.33 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.80 E-value=0.00034 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3357899999999999999998754
No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.80 E-value=0.00068 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++|+|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334578999999999999998864
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.00089 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999653
No 402
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.80 E-value=0.00076 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345589999999999999999998764
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.79 E-value=0.00081 Score=44.07 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998853
No 404
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.0006 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=16.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.79 E-value=0.00084 Score=43.92 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999854
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.79 E-value=0.00097 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.+.++|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 407
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.78 E-value=0.00097 Score=43.03 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00063 Score=51.39 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-.++|+|+.|+|||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355579999999999999999997653
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.78 E-value=0.00029 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 410
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.77 E-value=0.0012 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.74 E-value=0.0011 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 412
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.73 E-value=0.0014 Score=49.61 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++.........-+++++|+||+|||++++.+...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33444333345568899999999999999988654
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.73 E-value=0.00091 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.0011 Score=41.76 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998654
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.71 E-value=0.00097 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--++++|++|+|||||+..+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446789999999999999999873
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.70 E-value=0.0012 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....|+++|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998643
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00095 Score=48.72 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.--++++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345788999999999999999964
No 418
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00091 Score=47.98 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 13 FGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....-.+.+.|+||+|||++++.+...
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567778999999999999999999754
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.66 E-value=0.00098 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0014 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999998854
No 421
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.65 E-value=0.0016 Score=44.13 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999998864
No 422
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.65 E-value=0.0022 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..-.+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998865
No 423
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.65 E-value=0.0011 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|+.|+|||||++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445788999999999999999863
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.65 E-value=0.0015 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-|++.|++|+||||+++.+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998643
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.64 E-value=0.00084 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++|+|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999998653
No 426
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.62 E-value=0.0021 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44557999999999999999999764
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.62 E-value=0.0015 Score=41.51 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030133 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999984
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.62 E-value=0.0015 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+..-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455789999999999999999975
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.61 E-value=0.0012 Score=49.56 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.=+++|+|+.|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445579999999999999999998754
No 430
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.61 E-value=0.0027 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....+++++|++|+||||+...+.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34556899999999999999987753
No 431
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0014 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
No 432
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0017 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998876
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.59 E-value=0.0012 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5678999999999999999964
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0013 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44467899999999999999998754
No 435
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0024 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+...-|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45668999999999999999999764
No 436
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.57 E-value=0.0018 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...+++++|+||+||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467899999999999999998853
No 437
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.55 E-value=0.002 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.55 E-value=0.0017 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.54 E-value=0.0019 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999965
No 440
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.54 E-value=0.0018 Score=46.00 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999986643
No 441
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0022 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.0015 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.002 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998864
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0016 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 445
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.48 E-value=0.0019 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999997653
No 446
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0027 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998654
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.46 E-value=0.0016 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++|+|++|+|||||+..+.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.46 E-value=0.0019 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 449
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.003 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.|+||+|||+|++++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456999999999999999999753
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.44 E-value=0.0021 Score=42.79 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-++|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997664
No 451
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0033 Score=47.08 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....--+++.||||+|||+|++++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345567999999999999999999754
No 452
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.42 E-value=0.0014 Score=45.69 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+...|++.|..|+||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999988654
No 453
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.41 E-value=0.002 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030133 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+ .+|+|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999986
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.41 E-value=0.0022 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999997653
No 455
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.40 E-value=0.0019 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999998653
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.0019 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.39 E-value=0.0021 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999998754
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.38 E-value=0.0019 Score=50.47 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.-.++++|+.|+|||||++.+.+-.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34478999999999999999997653
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0018 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++|.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44557899999999999999998753
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.36 E-value=0.0024 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 461
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.35 E-value=0.0014 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=17.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+..-|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998853
No 462
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.34 E-value=0.0022 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44578999999999999999997654
No 463
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0012 Score=41.48 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34457999999999999999988654
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.33 E-value=0.0024 Score=43.56 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+..-|++.|++|+||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999854
No 465
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.33 E-value=0.0027 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 466
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0033 Score=46.49 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.||||+|||.|++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 44557999999999999999999654
No 467
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.32 E-value=0.016 Score=43.56 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030133 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+..-|+|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3455667799999999999999664
No 468
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0024 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030133 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
--++++|++|+|||+|+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999987774
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.30 E-value=0.0017 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999987643
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.29 E-value=0.0032 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998653
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.28 E-value=0.0023 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--+.|+|++|+|||||+..+.+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4446789999999999999999764
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.28 E-value=0.0028 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998754
No 473
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.28 E-value=0.0044 Score=49.74 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-.++++|++|+|||++++.+...
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 444444444556778999999999999999998653
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.28 E-value=0.0027 Score=45.00 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 475
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.27 E-value=0.0034 Score=44.61 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------C-Ccc--cccc---cc-----------cceeeE------E-----EECCE
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM------G-EVV--STIP---TI-----------GFNVET------V-----QYNNI 61 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~------~-~~~--~~~~---t~-----------~~~~~~------~-----~~~~~ 61 (182)
+.-.++++|++|+||||++..+.+ + .+. ...+ +. +..... + ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 455789999999999999998852 1 110 0000 00 000000 0 01456
Q ss_pred EEEEEECCCCCCCccc----hhhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030133 62 KFQVWDLGGQTSIRPY----WRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
++.++||+|....... ....+. ..+.+++|+|++.. .....++...+ .. -+ ..-+|+||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~-~~---l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF-SS---VP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT-SS---SC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH-hc---CC-CCEEEEeCCCccc
Confidence 8999999997654321 112332 36788999988754 23333322222 11 11 2356679999764
No 476
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.26 E-value=0.0024 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999764
No 477
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.26 E-value=0.0039 Score=50.06 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.6
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-+++++|+||+|||++++.+...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 344444444455668999999999999999988654
No 478
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.004 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998653
No 479
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.25 E-value=0.0018 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34478999999999999999887653
No 480
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.24 E-value=0.0053 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030133 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.+++.|+||+|||.|+.++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999976
No 481
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.21 E-value=0.0037 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999653
No 482
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0029 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030133 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
No 483
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.17 E-value=0.0031 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030133 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.--++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999999885
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.17 E-value=0.0024 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44557999999999999999998653
No 485
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0058 Score=45.55 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+..--|++.|+||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 44567999999999999999999754
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.11 E-value=0.0021 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999965
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.10 E-value=0.0041 Score=41.60 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030133 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999883
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.09 E-value=0.0038 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-|+|+|++|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988643
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.08 E-value=0.0061 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030133 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.08 E-value=0.0047 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-|+++|.+|+||||+.+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456889999999999999998654
No 491
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.07 E-value=0.004 Score=44.70 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988643
No 492
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.05 E-value=0.0034 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030133 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999764
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0049 Score=42.28 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
No 494
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.03 E-value=0.0035 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030133 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.++++|++|+|||||++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999864
No 495
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.0059 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-|+|+|++|+|||+|...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 468999999999999999997543
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.02 E-value=0.0024 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030133 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+|+|++|+|||||++.+.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.01 E-value=0.0045 Score=40.26 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030133 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...=+++.|++|+||||+.-.|..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34468999999999999999997653
No 498
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.01 E-value=0.0042 Score=50.60 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-.++++|++|+|||++++.+...
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 334444333344556899999999999999998754
No 499
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0057 Score=46.01 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...--|++.|+||+|||+|++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 55668999999999999999999754
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.00 E-value=0.004 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030133 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998654
Done!