BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030134
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4
          Length = 336

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 1  MERILERYER----------YCYA-ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKH 49
          +ERI+ R +R          Y  A E +L A      GNW      L +  + L R+ + 
Sbjct: 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQG 71

Query: 50 FMGEDLADLSLKELQSVEQQIDSG 73
            G DLA L +   +   Q++D  
Sbjct: 72 GSGGDLAVLLVDTFRQAGQRVDGA 95


>pdb|3K2O|A Chain A, Structure Of An Oxygenase
 pdb|3K2O|B Chain B, Structure Of An Oxygenase
          Length = 336

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 1   MERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLS 59
           +E  +ERYER       L A E       WTLE      R++   RNQK   GED    S
Sbjct: 57  VEEFVERYERPYKPVVLLNAQEGWSAQEKWTLE------RLKRKYRNQKFKCGEDNDGYS 110

Query: 60  LK 61
           +K
Sbjct: 111 VK 112


>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
 pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
           Fab Fragment
          Length = 334

 Score = 26.6 bits (57), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 1   MERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLS 59
           +E  +ERYER       L A E       WTLE      R++   RNQK   GED    S
Sbjct: 56  VEEFVERYERPYKPVVLLNAQEGWSAQEKWTLE------RLKRKYRNQKFKCGEDNDGYS 109

Query: 60  LK 61
           +K
Sbjct: 110 VK 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,168,363
Number of Sequences: 62578
Number of extensions: 128400
Number of successful extensions: 243
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)